Citrus Sinensis ID: 012534

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcccccccccccccHHHHHHHcccccccccccccccccccccccccEEEEEEcccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEccccccccccccccccccccHHHHHcccccccccHHHHcccccccccHHHHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHcHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEHHHHHHHccHHHHcccHHHHccccccHHHHHHHcccccccccHHHcccccccccccccEEEEEEcccEEEEEEccHHHHHHccHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEcccHHHHHHHHHHcccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccEEEccccEEEccccEEEEEccEEEccccccEcccccccHHHHcccccccccHEEEEEEccccccHHHHHHHHcccccEccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccHHHccHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mrslslslsvsQIFTKSSTLLFNQTTITRSQRHQSTCRFIrlsfcnpqtsgnsrTFATMAAAGAEEfvkgnvhpngvaviTLDRPKALNAMNLDMDIKYKSFLdewesdprvkcvliegsgprafcaGMDIKGVVAEIqkdrntplvpkvplkcgdvkeisTQNQLSEMIEVFTAEYSLICKIseykkpyislmdgvtmgfgigisghgryriVTEKTllampengiglfpdvgfsyiaakgpgggsvGAYLGMtgkristpsdalfaglgtdyvpsgnlgslKEALLAVTFSEDPHQDIVALLAKyssdpegeaplklllpqitscfssEKSVRQIIEELKKHQSSAETSVAQWADEALqgmgkgapfslcLTQKYFSKVAsahgktdnelsklsgvMKYEYRVALRSSLRSDFAEGVRAVLvdkdqnpkwnpasleevnQSEVEALfeplgtgveelkv
Flexible Loop (DISEMBL)
mrslslslsvsqiftksstllfnqttitrsqrhQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEiqkdrntplvpkvplkcgdvkEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAsahgktdnelsklsgvMKYEYRVALRSSLRSDFAEGVRAVLvdkdqnpkwnpasleevnqsevealfeplgtgveelkv
Low Complexity Region (SEG)
MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV
Disordered region (IsUnstruct)
***********QIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY*********LKLLLPQITSCFS*************************WADEALQGMGKGAPFSLCLTQKYFSKVASAHG****ELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV*************************************
Disordered Region (DISOPRED)
********************LF***********************************************GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS********LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT***ELK*
Disordered Region (DISEMBL)
*********VSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEE***********VAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV
Disordered Region (DISPRO)
****SLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFC********************EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	461	2.2.26 [Sep-21-2011]
Q9T0K7	421	3-hydroxyisobutyryl-CoA h	yes	no	0.906	0.992	0.674	1e-176
Q9LK08	418	3-hydroxyisobutyryl-CoA h	no	no	0.839	0.925	0.692	1e-166
Q5ZJ60	385	3-hydroxyisobutyryl-CoA h	yes	no	0.722	0.864	0.362	2e-56
Q8QZS1	385	3-hydroxyisobutyryl-CoA h	yes	no	0.718	0.859	0.367	1e-55
Q6NVY1	386	3-hydroxyisobutyryl-CoA h	yes	no	0.718	0.857	0.367	6e-55
Q5XIE6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.718	0.859	0.364	2e-54
A2VDC2	385	3-hydroxyisobutyryl-CoA h	N/A	no	0.715	0.857	0.384	1e-53
Q28FR6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.715	0.857	0.392	2e-53
Q58EB4	382	3-hydroxyisobutyryl-CoA h	yes	no	0.793	0.958	0.346	1e-52
Q9LKJ1	378	3-hydroxyisobutyryl-CoA h	no	no	0.720	0.878	0.351	2e-51

>sp|Q9T0K7|HIBC6_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=1 SV=2

 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/449 (67%), Positives = 351/449 (78%), Gaps = 31/449 (6%)

Query: 13  IFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNV 72
           I T S  + F + + T S +   T RF         +  + R F+ MA AG ++FVKGNV
Sbjct: 4   IKTLSHRIFFPKFSQTFSSQFHQTLRF---------SISDRRKFSAMAGAGVDDFVKGNV 54

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            PNGVA+ITLDR KALNAMNLDMDIKYKSFLDEWESDPRVKCV++EGS  RAFCAGMDIK
Sbjct: 55  FPNGVALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIK 114

Query: 133 GVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYIS 192
           GV AEIQKD+NTPLV KV                      FTAEY+LIC I+ YKKPYIS
Sbjct: 115 GVAAEIQKDKNTPLVQKV----------------------FTAEYTLICAIAAYKKPYIS 152

Query: 193 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYL 252
           LMDG+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYL
Sbjct: 153 LMDGITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYL 212

Query: 253 GMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE 312
           G+TGKRIS PSDALF GLGT YVPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE
Sbjct: 213 GLTGKRISAPSDALFVGLGTHYVPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPE 272

Query: 313 GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLC 372
            EA LK LLP I S FSS KS+++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL 
Sbjct: 273 SEAHLKSLLPHIESAFSSNKSIKETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLY 332

Query: 373 LTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 432
           LTQKYFS VA A  K +NEL+ L+GVMK EYR+ALRS+LR DFAEGVRAVL+DKDQNPKW
Sbjct: 333 LTQKYFSNVACAKSKPENELATLNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQNPKW 392

Query: 433 NPASLEEVNQSEVEALFEPLGTGVEELKV 461
           NP S+EEV+++EVEALF+PL   VEELKV
Sbjct: 393 NPTSIEEVDENEVEALFKPLSPEVEELKV 421

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q9LK08|HIBC7_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=At3g24360 PE=2 SV=1

 Score =  585 bits (1508), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/410 (69%), Positives = 332/410 (80%), Gaps = 23/410 (5%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
           + R F+ MA+ G++EFVKGNV+PNGVA+ITLDRPKALNAMNL+MD+KYKS LDEWE DP 
Sbjct: 32  HRRKFSVMAS-GSDEFVKGNVYPNGVALITLDRPKALNAMNLEMDLKYKSLLDEWEYDPG 90

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIE 171
           VKCV++EGS  RAFCAGMDIKGVVAEI  D+NT LV KV                     
Sbjct: 91  VKCVVVEGSTSRAFCAGMDIKGVVAEILMDKNTSLVQKV--------------------- 129

Query: 172 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP 231
            FTAEYSLICKI+ Y+KPYISLMDG+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFP
Sbjct: 130 -FTAEYSLICKIAGYRKPYISLMDGITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFP 188

Query: 232 DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVT 291
           DVGFSYIAA  PG GSVGAYLGMTG+RISTPSDALF GLGT YVPSG LGSL+EA+L+  
Sbjct: 189 DVGFSYIAAHSPGEGSVGAYLGMTGRRISTPSDALFVGLGTHYVPSGKLGSLREAILSAD 248

Query: 292 FSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETS 351
            S+DP Q I A L+ YSSDPE E+ L++LLPQI S FS  KSV++ IEELKK Q S+E S
Sbjct: 249 LSKDPQQHIQATLSNYSSDPETESHLQMLLPQIESAFSVSKSVKETIEELKKFQQSSEAS 308

Query: 352 VAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL 411
           VA+WA+EA+QG+ KGAPFSL LT KYFSKVA A GKT+N ++ L+GVM  EYR+ALRS+L
Sbjct: 309 VAEWANEAVQGIEKGAPFSLYLTHKYFSKVACAKGKTNNAMATLNGVMITEYRIALRSAL 368

Query: 412 RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 461
           RSDF EGVRAVL DKDQNPKW PASL+EV+++EV+ALF PL    EEL V
Sbjct: 369 RSDFTEGVRAVLTDKDQNPKWKPASLDEVDETEVDALFMPLSPEFEELNV 418

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1

 Score =  220 bits (560), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 203/383 (53%), Gaps = 50/383 (13%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G  +ITL+RPK LNA++  M  +    +  WE DP    ++I+G+G +AFCAG D++ + 
Sbjct: 44  GAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAIA 103

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
                              G   +  T++        F  EY L   I   KKPY++L+D
Sbjct: 104 -----------------DAGKAGDTMTRD-------YFREEYRLDNAIGTCKKPYVALID 139

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 255
           G+TMG G+G+S HG +R+ TEKT+ AMPE  IGLFPDVG  Y   +    G +G  L +T
Sbjct: 140 GITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPR--LSGKIGHLLALT 197

Query: 256 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS----DP 311
           G R+    D L AG+ T +V SG L  L++ L+A+       ++I  LL  Y      D 
Sbjct: 198 GFRLKG-RDVLKAGIATHFVESGKLPELEKDLIAL--KSPSKENIADLLNSYHMQTKIDQ 254

Query: 312 EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSL 371
           E E  L   + +I S FS+  S+ +I+++LK+  S        +A + L+ + K +P SL
Sbjct: 255 EKEFVLDEHMERINSIFSAN-SMEEIVQKLKQDGSP-------FATKQLEAINKMSPTSL 306

Query: 372 CLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPK 431
            LT +   + A+           L  V   EYR++       DF EGVRAVL+DKDQ+P+
Sbjct: 307 KLTLRQLREGATM---------SLQDVFTMEYRLSQACMRGHDFYEGVRAVLIDKDQSPR 357

Query: 432 WNPASLEEVNQSEVEALFEPLGT 454
           W PA+LEEV+   V+  F+PLG 
Sbjct: 358 WKPAALEEVSDEFVDNCFKPLGN 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q8QZS1|HIBCH_MOUSE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 209/381 (54%), Gaps = 50/381 (13%)

Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137
            VITL+RPK LNA++L+M  +    L  WE DP    ++I+G+G +AFCAG DIK + +E
Sbjct: 46  GVITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKAL-SE 104

Query: 138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV 197
            +K R                    QN   ++   F  EY L   I+  +KPY++L+DG+
Sbjct: 105 AKKAR--------------------QNLTQDL---FREEYILNNAIASCQKPYVALIDGI 141

Query: 198 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 257
           TMG G+G+S HG++R+ TE++L AMPE GIGLFPDVG  Y   +    G +G +L +TG 
Sbjct: 142 TMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ--GKLGYFLALTGY 199

Query: 258 RISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS----DPEG 313
           R+    D   AG+ T +V S  L  L+E LLA+       +D+  +L  Y +    D + 
Sbjct: 200 RLKG-RDVHRAGIATHFVDSEKLRVLEEELLAL--KSPSAEDVAGVLESYHAKSKMDQDK 256

Query: 314 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 373
               +  + +I SCFS+  +V QIIE L++  S        +A E ++ + K +P SL +
Sbjct: 257 SIIFEEHMDKINSCFSA-NTVEQIIENLRQDGSP-------FAIEQMKVINKMSPTSLKI 308

Query: 374 TQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 433
           T +   + +S           L  V+  EYR+        DF EGVRAVL+DKDQ PKW 
Sbjct: 309 TLRQLMEGSS---------KTLQEVLIMEYRITQACMEGHDFHEGVRAVLIDKDQTPKWK 359

Query: 434 PASLEEVNQSEVEALFEPLGT 454
           PA+L++V   ++ + F+ LG+
Sbjct: 360 PANLKDVTDEDLNSYFKSLGS 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q6NVY1|HIBCH_HUMAN 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2

 Score =  215 bits (547), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 208/381 (54%), Gaps = 50/381 (13%)

Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137
            VITL+RPK LNA+ L+M  +    L +WE DP    ++I+G+G +AFCAG DI+ V++E
Sbjct: 47  GVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIR-VISE 105

Query: 138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV 197
            +K +          K   V               F  EY L   +   +KPY++L+ G+
Sbjct: 106 AEKAKQ---------KIAPV--------------FFREEYMLNNAVGSCQKPYVALIHGI 142

Query: 198 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 257
           TMG G+G+S HG++R+ TEK L AMPE  IGLFPDVG  Y   +    G +G +L +TG 
Sbjct: 143 TMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQ--GKLGYFLALTGF 200

Query: 258 RISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS----DPEG 313
           R+    D   AG+ T +V S  L  L+E LLA+       ++I ++L  Y +    D + 
Sbjct: 201 RLKG-RDVYRAGIATHFVDSEKLAMLEEDLLAL--KSPSKENIASVLENYHTESKIDRDK 257

Query: 314 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 373
              L+  + +I SCFS+  +V +IIE L++  SS       +A E L+ + K +P SL +
Sbjct: 258 SFILEEHMDKINSCFSA-NTVEEIIENLQQDGSS-------FALEQLKVINKMSPTSLKI 309

Query: 374 TQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 433
           T +   + +S           L  V+  EYR++       DF EGVRAVL+DKDQ+PKW 
Sbjct: 310 TLRQLMEGSS---------KTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQSPKWK 360

Query: 434 PASLEEVNQSEVEALFEPLGT 454
           PA L+EV + ++   F+ LG+
Sbjct: 361 PADLKEVTEEDLNNHFKSLGS 381

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5XIE6|HIBCH_RAT 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 210/381 (55%), Gaps = 50/381 (13%)

Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137
            VITL+RPK LNA++L+M  +    L +WE DP    ++I+G+G +AFCAG DIK + +E
Sbjct: 46  GVITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKAL-SE 104

Query: 138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV 197
            +K   T                     LS+  ++F  EY L   I+  +KPY++L+DG+
Sbjct: 105 AKKAGQT---------------------LSQ--DLFREEYILNNAIASCQKPYVALIDGI 141

Query: 198 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 257
           TMG G+G+S HG++R+ TE++L AMPE GIGLFPDVG  Y   +    G +G +L +TG 
Sbjct: 142 TMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ--GKLGYFLALTGF 199

Query: 258 RISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPL 317
           R+    D   AG+ T +V S  L  L+E LLA+       +D+  +L  Y +  +     
Sbjct: 200 RLKG-RDVHRAGIATHFVDSEKLHVLEEELLAL--KSPSAEDVAGVLESYHAKSKMGQDK 256

Query: 318 KLL----LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 373
            ++    + +I SCFS+  +V QI+E L++  S        +A E ++ + K +P SL +
Sbjct: 257 SIIFEEHMDKINSCFSA-NTVEQILENLRQDGSP-------FAMEQIKVINKMSPTSLKI 308

Query: 374 TQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 433
           T     ++     KT      L  V+  EYR+        DF EGVRAVL+DKDQ PKW 
Sbjct: 309 T---LRQLMEGSTKT------LQEVLTMEYRLTQACMEGHDFHEGVRAVLIDKDQTPKWK 359

Query: 434 PASLEEVNQSEVEALFEPLGT 454
           PA L++V   ++ + F+ LG+
Sbjct: 360 PADLKDVTDEDLNSYFKSLGS 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|A2VDC2|HIBCH_XENLA 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/382 (38%), Positives = 203/382 (53%), Gaps = 52/382 (13%)

Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137
            VITL+RPKALNA+NL M  +    L  WE DP    V+I+G+G +AFCAG DI+ V   
Sbjct: 46  GVITLNRPKALNALNLGMIRQIYPQLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAVT-- 103

Query: 138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV 197
                            G V +   Q+        F  EY L   I   KKPY++++DG+
Sbjct: 104 ---------------DAGKVGDRLAQD-------FFREEYILNNAIGTCKKPYVAVIDGI 141

Query: 198 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 257
           TMG G+G+S HG +R+ +EKTL AMPE  IGLFPDVG  Y   +    G +G YL +TG 
Sbjct: 142 TMGGGVGLSVHGHFRVASEKTLFAMPETAIGLFPDVGGGYFLPRLT--GKLGLYLALTGF 199

Query: 258 RISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA-LLAKYS--SDPEGE 314
           R+   SD   AG+ T +V S  L SL++ L+A+   + P ++ VA +L  Y   S    +
Sbjct: 200 RLK-GSDVQKAGIATHFVESEKLSSLEQDLVAM---KSPSKENVADVLDSYQKKSYAAQD 255

Query: 315 APLKLL--LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLC 372
            P  L   + +I S FS   +V +I+E LK   SS       +A + LQ +   +P SL 
Sbjct: 256 KPFVLAENMDKINSLFSG-NTVEEIMENLKCDGSS-------FAMKQLQTLSTMSPTSLK 307

Query: 373 LTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 432
           +T +   + AS           L  V+  EYR++       DF EGVRAVL+DKDQ  KW
Sbjct: 308 ITFRQLKEGASM---------SLQEVLTMEYRLSQACMNGHDFYEGVRAVLIDKDQKAKW 358

Query: 433 NPASLEEVNQSEVEALFEPLGT 454
            P SLEEV +  +++ F  LG+
Sbjct: 359 KPESLEEVTEDYIDSCFTSLGS 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q28FR6|HIBCH_XENTR 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 150/382 (39%), Positives = 205/382 (53%), Gaps = 52/382 (13%)

Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137
            VITL+RPKALNA+NL M       L  WE DP    V+I+G G +AFCAG DI+ V   
Sbjct: 46  GVITLNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIRAVT-- 103

Query: 138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV 197
              D           K GD        +L++  + F  EY L   I  YKKPY++L+DG+
Sbjct: 104 ---DAG---------KAGD--------RLAQ--DFFREEYILNNAIGTYKKPYVALIDGI 141

Query: 198 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 257
           TMG G+G+S HG +R+ +E TL AMPE  IGLFPDVG  Y   + P  G +G YL +TG 
Sbjct: 142 TMGGGVGLSVHGHFRVASENTLFAMPETAIGLFPDVGGGYFLPRLP--GKLGLYLALTGF 199

Query: 258 RISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA-LLAKYSSDPEG--E 314
           R+   SD   AG+ T +V S  + SL++ L+A+   + P ++ VA +L  Y +      +
Sbjct: 200 RLKG-SDVQKAGIATHFVESEKIPSLEQDLVAM---KCPSKENVADVLDSYHNKSYAAQD 255

Query: 315 APLKLL--LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLC 372
            P  L   L +I S FS+  SV  IIE L+   SS       +A + LQ +   +P SL 
Sbjct: 256 KPFVLAEHLDKINSLFSAS-SVEAIIENLRCDGSS-------FALKQLQTLSTMSPTSLK 307

Query: 373 LTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 432
           +T +   + +S           L  V+  EYR++       DF EGVRAVL+DK+QN KW
Sbjct: 308 ITFRQLKEGSSM---------SLQEVLTMEYRLSQACMKGYDFYEGVRAVLIDKNQNAKW 358

Query: 433 NPASLEEVNQSEVEALFEPLGT 454
           NP  LEEV    +++ F  LG 
Sbjct: 359 NPELLEEVTDDYIDSYFTSLGN 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q58EB4|HIBCH_DANRE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/430 (34%), Positives = 212/430 (49%), Gaps = 64/430 (14%)

Query: 27  ITRSQRHQSTCRFIRLS-FCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRP 85
            T +QR +S CR  R+        +G+   F  +  AG               VITL+RP
Sbjct: 6   FTSAQRLRSVCRLQRIHGHMMSSKAGSEVLFEKVGKAG---------------VITLNRP 50

Query: 86  KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145
           KALNA+ L+M       L +W+ D     V+I+G+G +AFCAG DI+ + AE  K     
Sbjct: 51  KALNALTLNMIRHIYPQLKKWDKDSETDIVIIKGAGEKAFCAGGDIRAI-AEAGK----- 104

Query: 146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGI 205
                             N LS++   F  EY L   I  Y+KPY++L++G+TMG G+G+
Sbjct: 105 ----------------AGNLLSQVF--FREEYILNNTIGTYQKPYVALINGITMGGGVGL 146

Query: 206 SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDA 265
           S HG++R+ TEKTL AMPE GIGLFPDVG  Y   +    G +G +L +TG R+    D 
Sbjct: 147 SVHGQFRVATEKTLFAMPETGIGLFPDVGGGYFLPRLQ--GKLGLFLALTGFRLKG-RDV 203

Query: 266 LFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 325
              G+ T +V S  + SL++ L  V        D+  LL  Y      +A    +L + T
Sbjct: 204 QRVGVATHFVQSEKIESLEKDL--VDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQT 261

Query: 326 SCFS---SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382
                  S  SV +I+E LKK  S+       +A +  + + K +P SL LT +   + A
Sbjct: 262 EAIDRLFSAGSVEEIVENLKKDGSA-------FALKQAETLAKMSPTSLKLTFRQIEEGA 314

Query: 383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQ 442
                       L  V   EYR++       DF EGVRAVL+DKDQ+PKW P++L  V++
Sbjct: 315 RM---------SLQEVFMMEYRLSQACMNGHDFYEGVRAVLIDKDQSPKWKPSTLAGVSE 365

Query: 443 SEVEALFEPL 452
             V+  F  L
Sbjct: 366 QFVDKCFSSL 375

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 192/378 (50%), Gaps = 46/378 (12%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V ++TL+RPK LNA++  M  +       +E DP VK V+++G G RAFCAG D+  VV 
Sbjct: 19  VRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVR 77

Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
           +I                        Q         F++EY L   ++ Y K  +S+++G
Sbjct: 78  DI-----------------------NQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNG 114

Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 256
           + MG G G+S HGR+RI TE T+ AMPE  +GLFPDVG SY  ++ P  G  G Y+G+TG
Sbjct: 115 IVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLP--GFFGEYVGLTG 172

Query: 257 KRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEA 315
            R+   ++ L  GL T +VPS  L +L EA L    S DP      +L  Y+  P   + 
Sbjct: 173 ARLDG-AEMLACGLATHFVPSTRLTAL-EADLCRINSNDP-TFASTILDAYTQHPRLKQQ 229

Query: 316 PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQ 375
                L  I  CF S ++V +II  L++    A      W    +Q + KG+P SL ++ 
Sbjct: 230 SAYRRLDVIDRCF-SRRTVEEIISALERE---ATQEADGWISATIQALKKGSPASLKISL 285

Query: 376 KYFSKVASAHGKTDNELSKLSGVMKYEYRV---ALRSSLRSDFAEGVRAVLVDKDQNPKW 432
           +            +  L  +   +  EYR+    ++  +  DF EG RA+LVDKD+NPKW
Sbjct: 286 RSIR---------EGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKDKNPKW 336

Query: 433 NPASLEEVNQSEVEALFE 450
            P  LE++  S VE  FE
Sbjct: 337 EPRRLEDMKDSMVEQYFE 354

Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
297738862	407	unnamed protein product [Vitis vinifera]	0.874	0.990	0.788	0.0
255549046	416	3-hydroxybutyryl-CoA dehydratase, putati	0.902	1.0	0.685	0.0
359484612	425	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.921	1.0	0.711	1e-180
449443139	424	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.893	0.971	0.691	1e-178
224088081	380	predicted protein [Populus trichocarpa]	0.817	0.992	0.751	1e-176
118489716	382	unknown [Populus trichocarpa x Populus d	0.815	0.984	0.753	1e-176
356513119	408	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.854	0.965	0.728	1e-175
359484614	421	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.913	1.0	0.696	1e-175
356524057	408	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.854	0.965	0.721	1e-174
297790718	418	hypothetical protein ARALYDRAFT_332986 [	0.861	0.949	0.711	1e-174

>gi|297738862|emb|CBI28107.3| unnamed protein product [Vitis vinifera]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/407 (78%), Positives = 353/407 (86%), Gaps = 4/407 (0%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           MAAA AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDI+YK FLDEWE DP VKCVL+E
Sbjct: 1   MAAAAAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIRYKKFLDEWEMDPMVKCVLVE 60

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLK----CGDVKEISTQNQLSEMIEVFT 174
           GS  RAF AGMDIKGVVAEIQKD+ TPLV K        CGDVK+IS + QLS +IEVFT
Sbjct: 61  GSSSRAFSAGMDIKGVVAEIQKDKTTPLVQKCHFHFYIPCGDVKQISARKQLSYVIEVFT 120

Query: 175 AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG 234
           AEYSLICKISEYKKPYISLMDG+TMGFGIG+SGHGRYRIVTE+TLLAMPENGIGLFPDVG
Sbjct: 121 AEYSLICKISEYKKPYISLMDGITMGFGIGLSGHGRYRIVTERTLLAMPENGIGLFPDVG 180

Query: 235 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE 294
           F+YIAA+ PG GSVGAYLGMTGKRIST +DAL+ GLGT YVPSGNL SLKEALL  +FSE
Sbjct: 181 FAYIAAQSPGEGSVGAYLGMTGKRISTSADALYVGLGTHYVPSGNLSSLKEALLTTSFSE 240

Query: 295 DPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQ 354
           DPHQDI  LL KYS DPE EA LKLLLPQI S FS++KSV +IIEELKKHQ S +  V++
Sbjct: 241 DPHQDIRELLVKYSHDPESEAQLKLLLPQIVSTFSADKSVNEIIEELKKHQLSTDAIVSE 300

Query: 355 WADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSD 414
           WA EAL G+GKGAPFSLCLTQK+FS+VA A GK D++L  LSGVMK EYR+ALRSSLR+D
Sbjct: 301 WAKEALLGLGKGAPFSLCLTQKHFSRVALARGKNDSDLCSLSGVMKTEYRIALRSSLRND 360

Query: 415 FAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 461
           FAEGVRAVLVDKDQ PKWNP+SLEEV+ +EVEA+FEPL  G EEL+V
Sbjct: 361 FAEGVRAVLVDKDQKPKWNPSSLEEVDLNEVEAVFEPLSQGTEELRV 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549046|ref|XP_002515579.1| 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis] gi|223545523|gb|EEF47028.1| 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/461 (68%), Positives = 367/461 (79%), Gaps = 45/461 (9%)

Query: 1   MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMA 60
           MRSL   +S S++ +KS+ L     +    ++   +CR                TFA MA
Sbjct: 1   MRSL---VSASRLVSKSAILFTESASSFSFRKSYLSCR----------------TFAIMA 41

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           +A ++ FVKGNVH NGVAVITLDRPKALNAMNLDMD+KYKSFLDEWESDPRVKCVL+EGS
Sbjct: 42  SASSDNFVKGNVHQNGVAVITLDRPKALNAMNLDMDVKYKSFLDEWESDPRVKCVLVEGS 101

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLI 180
            PRAFCAG                          GDVK I+++NQLS MIEVFTAEYSLI
Sbjct: 102 SPRAFCAG--------------------------GDVKAITSKNQLSHMIEVFTAEYSLI 135

Query: 181 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA 240
           CKIS+YKKPYIS MDG+TMGFG+G+SGHGRYR+VTE+T+LAMPENGIGLFPDVGFSYIAA
Sbjct: 136 CKISDYKKPYISFMDGITMGFGLGLSGHGRYRVVTERTVLAMPENGIGLFPDVGFSYIAA 195

Query: 241 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI 300
             PG GSVGAYLG+TGKRISTPSDALF GLGT +VPSGNLGS+KEAL ++TFS+DP+ DI
Sbjct: 196 HSPGEGSVGAYLGLTGKRISTPSDALFVGLGTHFVPSGNLGSVKEALFSMTFSQDPNDDI 255

Query: 301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEAL 360
            ALLAKYS++PE EA LKLLLPQI S FS+  SV++I EELKKHQ SA+T VA+WA +AL
Sbjct: 256 KALLAKYSNEPESEAELKLLLPQIISTFSASNSVKEITEELKKHQQSADTKVAEWASDAL 315

Query: 361 QGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVR 420
           QG+GKGAPFSLCLTQKYFSKVASA+GK ++ELS L+GVMK EYR+ALRSSLR+DFAEGVR
Sbjct: 316 QGLGKGAPFSLCLTQKYFSKVASAYGKPNSELSTLNGVMKTEYRIALRSSLRNDFAEGVR 375

Query: 421 AVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 461
           AVLVDKDQ PKWNP SLE+++Q+EVE+LFEPL   VEELKV
Sbjct: 376 AVLVDKDQKPKWNPPSLEDIDQNEVESLFEPLSPEVEELKV 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484612|ref|XP_003633131.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 2 [Vitis vinifera]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 328/461 (71%), Positives = 364/461 (78%), Gaps = 36/461 (7%)

Query: 1   MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMA 60
           MRSL   +  SQ+  +SSTL   +   + SQ          L F   +TS + R  ATMA
Sbjct: 1   MRSL---VGASQLLNRSSTLFLFRGPKSHSQY---------LHFG--KTSSSLRGLATMA 46

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           AA AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDI+YK FLDEWE DP VKCVL+EGS
Sbjct: 47  AAAAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIRYKKFLDEWEMDPMVKCVLVEGS 106

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLI 180
             RAF AGMDIKGVVAEIQKD+ TPLV KV                      FTAEYSLI
Sbjct: 107 SSRAFSAGMDIKGVVAEIQKDKTTPLVQKV----------------------FTAEYSLI 144

Query: 181 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA 240
           CKISEYKKPYISLMDG+TMGFGIG+SGHGRYRIVTE+TLLAMPENGIGLFPDVGF+YIAA
Sbjct: 145 CKISEYKKPYISLMDGITMGFGIGLSGHGRYRIVTERTLLAMPENGIGLFPDVGFAYIAA 204

Query: 241 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI 300
           + PG GSVGAYLGMTGKRIST +DAL+ GLGT YVPSGNL SLKEALL  +FSEDPHQDI
Sbjct: 205 QSPGEGSVGAYLGMTGKRISTSADALYVGLGTHYVPSGNLSSLKEALLTTSFSEDPHQDI 264

Query: 301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEAL 360
             LL KYS DPE EA LKLLLPQI S FS++KSV +IIEELKKHQ S +  V++WA EAL
Sbjct: 265 RELLVKYSHDPESEAQLKLLLPQIVSTFSADKSVNEIIEELKKHQLSTDAIVSEWAKEAL 324

Query: 361 QGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVR 420
            G+GKGAPFSLCLTQK+FS+VA A GK D++L  LSGVMK EYR+ALRSSLR+DFAEGVR
Sbjct: 325 LGLGKGAPFSLCLTQKHFSRVALARGKNDSDLCSLSGVMKTEYRIALRSSLRNDFAEGVR 384

Query: 421 AVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 461
           AVLVDKDQ PKWNP+SLEEV+ +EVEA+FEPL  G EEL+V
Sbjct: 385 AVLVDKDQKPKWNPSSLEEVDLNEVEAVFEPLSQGTEELRV 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443139|ref|XP_004139338.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Cucumis sativus] gi|449518115|ref|XP_004166089.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Cucumis sativus]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 309/447 (69%), Positives = 355/447 (79%), Gaps = 35/447 (7%)

Query: 6   LSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAE 65
           L  + SQ   KSSTL  +QT  + +  H  +    R            RT A MA    +
Sbjct: 5   LGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSR------------RTLAAMAGTD-D 51

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           +FVKG+VHPNGVAVITLDRPKALNAMNLDMDI+YK +LDEWE DPRVKCVL+EGS  RAF
Sbjct: 52  QFVKGSVHPNGVAVITLDRPKALNAMNLDMDIQYKKYLDEWEEDPRVKCVLVEGSSSRAF 111

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISE 185
           CAGMDIKGVVAEIQKD+NT LV KV                      FTAEYSLICKIS 
Sbjct: 112 CAGMDIKGVVAEIQKDKNTSLVQKV----------------------FTAEYSLICKISN 149

Query: 186 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 245
           YKKPY+S MDG+TMGFGIG+SGHGRYRI+TE+TLLAMPENGIGLFPDVGFSYIAA+GPG 
Sbjct: 150 YKKPYLSFMDGITMGFGIGLSGHGRYRIITERTLLAMPENGIGLFPDVGFSYIAAQGPGE 209

Query: 246 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305
           GSVGAYLG+TG+RIS+PSDAL+ GLGT YVPSGNLGSLKE LL  TFSEDPHQDI  LLA
Sbjct: 210 GSVGAYLGLTGRRISSPSDALYVGLGTHYVPSGNLGSLKEGLLTATFSEDPHQDINTLLA 269

Query: 306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGK 365
           KYSSDPE    LKLLLPQITS F + KSV++ +EELKKHQ  + +SV +WA E+LQG+GK
Sbjct: 270 KYSSDPESPPSLKLLLPQITSSFGTNKSVKETVEELKKHQLDSSSSVVEWAKESLQGIGK 329

Query: 366 GAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVD 425
           GAPFSL LTQKYFSKVA+AHGK+++ELS L+GVM+ EYR+ALRSSLR+DFAEGVRAVLVD
Sbjct: 330 GAPFSLALTQKYFSKVAAAHGKSNDELSTLNGVMRTEYRIALRSSLRNDFAEGVRAVLVD 389

Query: 426 KDQNPKWNPASLEEVNQSEVEALFEPL 452
           KDQNPKWNP++LE+V++ EV++LFEPL
Sbjct: 390 KDQNPKWNPSTLEDVDEKEVDSLFEPL 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088081|ref|XP_002308317.1| predicted protein [Populus trichocarpa] gi|222854293|gb|EEE91840.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/399 (75%), Positives = 335/399 (83%), Gaps = 22/399 (5%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           MAAA  +EFVKGN+HPNGVAV+TLDRPKALNAMNLDMDIKYK+F+DEWESDPRV+CVL+E
Sbjct: 1   MAAAAVDEFVKGNIHPNGVAVLTLDRPKALNAMNLDMDIKYKTFMDEWESDPRVRCVLVE 60

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYS 178
           GS PRAFCAGMDIKGVVAEI+KD+NTP+V KV                      FTAEYS
Sbjct: 61  GSSPRAFCAGMDIKGVVAEIRKDKNTPVVQKV----------------------FTAEYS 98

Query: 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 238
           LICKISEYKKPY+SLMDGVTMGFGIG+SGHGRYRIVTE+T+LAMPENGIGLFPDVGFSYI
Sbjct: 99  LICKISEYKKPYVSLMDGVTMGFGIGLSGHGRYRIVTERTVLAMPENGIGLFPDVGFSYI 158

Query: 239 AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQ 298
           AAK PG GSVG YL +TGKRISTPSDALF GLG+ YVPSGNL  LKEALL +TFS DPHQ
Sbjct: 159 AAKSPGEGSVGNYLALTGKRISTPSDALFVGLGSHYVPSGNLVQLKEALLQITFSNDPHQ 218

Query: 299 DIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADE 358
           DI ALLA+Y  DPE E+ LK LLP+I S F   KSV +IIE+LK HQ SA+  V +WA++
Sbjct: 219 DINALLAEYGHDPESESQLKSLLPRIISTFGPNKSVEEIIEKLKSHQLSADRKVVEWAND 278

Query: 359 ALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEG 418
           ALQG+GKGAPFSLCLTQKYFS+VA A GK  NELS LSGVMK EYR+ALRSSLR+DFAEG
Sbjct: 279 ALQGIGKGAPFSLCLTQKYFSRVAFAFGKISNELSTLSGVMKTEYRIALRSSLRNDFAEG 338

Query: 419 VRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVE 457
           VRAVLVDKDQ PKWNP+SLEEV+QSE+E+LF+PL    E
Sbjct: 339 VRAVLVDKDQKPKWNPSSLEEVDQSEIESLFKPLSPEAE 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489716|gb|ABK96659.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/398 (75%), Positives = 333/398 (83%), Gaps = 22/398 (5%)

Query: 60  AAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG 119
           AAA  +EFVKGN+HPNGVAV+TLDRPKALNAMNLDMDIKYK+F+DEWESDPRVKCVL+EG
Sbjct: 4   AAAAVDEFVKGNIHPNGVAVLTLDRPKALNAMNLDMDIKYKTFMDEWESDPRVKCVLVEG 63

Query: 120 SGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSL 179
           S PRAFCAGMDIKGVVAEIQKD+NTP+V KV                      FTAEYSL
Sbjct: 64  SSPRAFCAGMDIKGVVAEIQKDKNTPVVQKV----------------------FTAEYSL 101

Query: 180 ICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIA 239
           ICKISEYKKPY+SLMDGVTMGFGIG+SGHGRYRIVTE+T+LAMPENGIGLFPDVGFSYIA
Sbjct: 102 ICKISEYKKPYVSLMDGVTMGFGIGLSGHGRYRIVTERTVLAMPENGIGLFPDVGFSYIA 161

Query: 240 AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD 299
           AK PG GSVG YL +TGKRISTPSDALF GLG+ YVPSGNL  LKEALL +TFS DPHQD
Sbjct: 162 AKSPGEGSVGNYLALTGKRISTPSDALFVGLGSHYVPSGNLVQLKEALLQITFSNDPHQD 221

Query: 300 IVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEA 359
           I +LLA+Y  DPE E+ LK LLP+I S F   KSV +IIE LK HQ SA+  V +WA++A
Sbjct: 222 INSLLAEYGHDPESESQLKSLLPRIISTFGPNKSVEEIIEMLKSHQMSADPKVVEWANDA 281

Query: 360 LQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGV 419
           LQG+GKGAPFSLCLTQKYFS+VA A GK  NELS LSGVMK EYR+ALRSSLR+DFAEGV
Sbjct: 282 LQGIGKGAPFSLCLTQKYFSRVAFAFGKISNELSTLSGVMKTEYRIALRSSLRNDFAEGV 341

Query: 420 RAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVE 457
           RAVLVDKDQ PKWNP+SLEEV+QSE+E+LF+PL    E
Sbjct: 342 RAVLVDKDQKPKWNPSSLEEVDQSEIESLFKPLSPEAE 379

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513119|ref|XP_003525261.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 1 [Glycine max]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 306/420 (72%), Positives = 342/420 (81%), Gaps = 26/420 (6%)

Query: 42  LSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKS 101
           L+F   Q S + R F+ MA    EEFVKG VH NGVAVITLDRPKALNAMNLDMD+KYKS
Sbjct: 15  LTFSRFQPSFSLRAFSAMA----EEFVKGTVHQNGVAVITLDRPKALNAMNLDMDVKYKS 70

Query: 102 FLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEIS 161
           +LDEWESDPRVKCVL++ S PRAFCAGMDIKGVVAEIQKD+NTPLV KV           
Sbjct: 71  YLDEWESDPRVKCVLVDSSSPRAFCAGMDIKGVVAEIQKDKNTPLVQKV----------- 119

Query: 162 TQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 221
                      FTAEYSLICKIS+YKKPYIS MDG+TMGFGIG+SGHGRYRI+TE+T+LA
Sbjct: 120 -----------FTAEYSLICKISDYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLA 168

Query: 222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 281
           MPENGIGLFPDVGF++IAA+ PG GSVGAYLG+TGKRISTPSDA++ GLGT YVPSG LG
Sbjct: 169 MPENGIGLFPDVGFAHIAAQSPGEGSVGAYLGLTGKRISTPSDAIYLGLGTHYVPSGKLG 228

Query: 282 SLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEEL 341
           S KEALLA  FS+DPHQDI  LLA+Y S+PE EA LKLLLPQI S F   KSV +IIEEL
Sbjct: 229 SFKEALLATNFSQDPHQDIKVLLARYESNPESEAQLKLLLPQIVSTFGGNKSVTEIIEEL 288

Query: 342 KKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKY 401
           KKHQSS + +V +WA+EALQG+GKGAPFSL LT KYFS VASA G  D ELS LSGVMK 
Sbjct: 289 KKHQSSTDPNVVEWANEALQGLGKGAPFSLFLTYKYFSLVASAVGNNDGELSTLSGVMKT 348

Query: 402 EYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 461
           EYR+ALRSSLR DF+EGVRAVLV KDQNPKW P+SLEEV+ SEVEA+F+PLG  V EL+V
Sbjct: 349 EYRIALRSSLRHDFSEGVRAVLVAKDQNPKWKPSSLEEVDPSEVEAVFKPLGPEVGELRV 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484614|ref|XP_002284721.2| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 1 [Vitis vinifera]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 321/461 (69%), Positives = 359/461 (77%), Gaps = 40/461 (8%)

Query: 1   MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMA 60
           MRSL   +  SQ+  +SSTL   +   + SQ          L F   +TS + R  ATMA
Sbjct: 1   MRSL---VGASQLLNRSSTLFLFRGPKSHSQY---------LHFG--KTSSSLRGLATMA 46

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           AA AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDI+YK FLDEWE DP VKCVL+EGS
Sbjct: 47  AAAAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIRYKKFLDEWEMDPMVKCVLVEGS 106

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLI 180
             RAF AG                          GDVK+IS + QLS +IEVFTAEYSLI
Sbjct: 107 SSRAFSAG--------------------------GDVKQISARKQLSYVIEVFTAEYSLI 140

Query: 181 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA 240
           CKISEYKKPYISLMDG+TMGFGIG+SGHGRYRIVTE+TLLAMPENGIGLFPDVGF+YIAA
Sbjct: 141 CKISEYKKPYISLMDGITMGFGIGLSGHGRYRIVTERTLLAMPENGIGLFPDVGFAYIAA 200

Query: 241 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI 300
           + PG GSVGAYLGMTGKRIST +DAL+ GLGT YVPSGNL SLKEALL  +FSEDPHQDI
Sbjct: 201 QSPGEGSVGAYLGMTGKRISTSADALYVGLGTHYVPSGNLSSLKEALLTTSFSEDPHQDI 260

Query: 301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEAL 360
             LL KYS DPE EA LKLLLPQI S FS++KSV +IIEELKKHQ S +  V++WA EAL
Sbjct: 261 RELLVKYSHDPESEAQLKLLLPQIVSTFSADKSVNEIIEELKKHQLSTDAIVSEWAKEAL 320

Query: 361 QGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVR 420
            G+GKGAPFSLCLTQK+FS+VA A GK D++L  LSGVMK EYR+ALRSSLR+DFAEGVR
Sbjct: 321 LGLGKGAPFSLCLTQKHFSRVALARGKNDSDLCSLSGVMKTEYRIALRSSLRNDFAEGVR 380

Query: 421 AVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 461
           AVLVDKDQ PKWNP+SLEEV+ +EVEA+FEPL  G EEL+V
Sbjct: 381 AVLVDKDQKPKWNPSSLEEVDLNEVEAVFEPLSQGTEELRV 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524057|ref|XP_003530649.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Glycine max]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 303/420 (72%), Positives = 343/420 (81%), Gaps = 26/420 (6%)

Query: 42  LSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKS 101
           L+F   Q S + R F+ MA    EEFVKG+VH NGVAVITLDRPKALNAMNLDMD+KYKS
Sbjct: 15  LTFSRFQPSFSLRAFSAMA----EEFVKGSVHQNGVAVITLDRPKALNAMNLDMDVKYKS 70

Query: 102 FLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEIS 161
           +LDEWESDPRVKCVL++ S PRAFCAGMDIKGVVAEIQKD+NTPLV KV           
Sbjct: 71  YLDEWESDPRVKCVLVDSSSPRAFCAGMDIKGVVAEIQKDKNTPLVQKV----------- 119

Query: 162 TQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 221
                      FTAEYSLICKIS+YKKPYIS MDG+TMGFGIG+SGHGRYRI+TE+T+LA
Sbjct: 120 -----------FTAEYSLICKISDYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLA 168

Query: 222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 281
           MPENGIGLFPDVGF+YIAA+ PG GSVGAYLG+TGKRISTPSDA++AGLGT YVPSG LG
Sbjct: 169 MPENGIGLFPDVGFAYIAAQSPGEGSVGAYLGLTGKRISTPSDAIYAGLGTHYVPSGKLG 228

Query: 282 SLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEEL 341
           S K+ALLA  FS+DPHQDI  LLA+Y S+PE EA LKLLLPQ+ S F   KSV +IIEEL
Sbjct: 229 SFKDALLATNFSQDPHQDIKVLLARYESNPESEAQLKLLLPQLVSTFGGNKSVTEIIEEL 288

Query: 342 KKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKY 401
           KKHQSS + +V +WA+EALQG+ KGAPFSL LT KYFS VASA G  D  LS LSGVM+ 
Sbjct: 289 KKHQSSTDPNVVEWANEALQGLRKGAPFSLFLTNKYFSSVASAVGNNDGGLSTLSGVMET 348

Query: 402 EYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 461
           EYR+ALRSSLR DF+EGVRAVLVDKDQNPKW P+SLEE++ SEVEA+F+PLG  V EL+V
Sbjct: 349 EYRIALRSSLRHDFSEGVRAVLVDKDQNPKWKPSSLEEIDPSEVEAVFKPLGPEVGELRV 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790718|ref|XP_002863244.1| hypothetical protein ARALYDRAFT_332986 [Arabidopsis lyrata subsp. lyrata] gi|297309078|gb|EFH39503.1| hypothetical protein ARALYDRAFT_332986 [Arabidopsis lyrata subsp. lyrata]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 301/423 (71%), Positives = 345/423 (81%), Gaps = 26/423 (6%)

Query: 43  SFCNPQTS----GNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIK 98
           +F + QT      + R F+ MA AG ++FVKGNV PNGVA+ITLDR KALNAMNLDMDIK
Sbjct: 18  TFSSHQTRRFSISDRRKFSAMAGAGVDDFVKGNVFPNGVALITLDRTKALNAMNLDMDIK 77

Query: 99  YKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVK 158
           YKSFLDEWESDPRVKCV++EGS PRAFCAGMDIKGV AEIQKD+NTPLV KV        
Sbjct: 78  YKSFLDEWESDPRVKCVIVEGSTPRAFCAGMDIKGVAAEIQKDKNTPLVQKV-------- 129

Query: 159 EISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 218
                         FTAEY+LIC I+ YKKPYISLMDG+TMGFG+G+SGHGRYR++TE+T
Sbjct: 130 --------------FTAEYTLICAIAGYKKPYISLMDGITMGFGLGLSGHGRYRVITERT 175

Query: 219 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 278
           +LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG+TGKRISTPSDALF GLGT YVPS 
Sbjct: 176 VLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLGLTGKRISTPSDALFVGLGTHYVPSE 235

Query: 279 NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQII 338
            + SLKEA+L+   S DP+QDI A L+KYS + E EA LK LLPQI S FSS KSV++ I
Sbjct: 236 KIASLKEAILSANLSGDPNQDIQATLSKYSGNLESEAHLKSLLPQIESAFSSNKSVKETI 295

Query: 339 EELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV 398
           EELKK+Q S E SV +WA+EAL+G+ KGAPFSL LTQKYFS VASA GKT+NEL+ L+GV
Sbjct: 296 EELKKYQRSTEPSVVEWANEALKGLEKGAPFSLYLTQKYFSNVASAKGKTENELATLNGV 355

Query: 399 MKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEE 458
           MK EYR+ALRS+LR DFAEGVRAVL+DKDQNPKWNPAS+EEV+++EVEALF+PL   VEE
Sbjct: 356 MKTEYRIALRSALRGDFAEGVRAVLIDKDQNPKWNPASIEEVDENEVEALFKPLSQEVEE 415

Query: 459 LKV 461
           LKV
Sbjct: 416 LKV 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
TAIR|locus:2142050	421	AT4G13360 [Arabidopsis thalian	0.663	0.726	0.703	1.1e-157
TAIR|locus:2087218	418	AT3G24360 [Arabidopsis thalian	0.665	0.734	0.703	1.7e-150
TAIR|locus:2152069	378	CHY1 "beta-hydroxyisobutyryl-C	0.570	0.695	0.362	8.7e-51
TAIR|locus:2054437	378	AT2G30660 [Arabidopsis thalian	0.607	0.740	0.338	5.3e-49
ASPGD|ASPL0000005013	505	AN6844 [Emericella nidulans (t	0.624	0.570	0.335	9.8e-48
TAIR|locus:2054517	378	AT2G30650 [Arabidopsis thalian	0.624	0.761	0.348	2e-47
UNIPROTKB|Q48KW7	365	PSPPH_1721 "Enoly-CoA hydratas	0.605	0.764	0.316	4.1e-45
FB|FBgn0038326	386	CG5044 [Drosophila melanogaste	0.444	0.531	0.390	3.7e-44
TIGR_CMR|CBU_1856	379	CBU_1856 "enoyl-CoA hydratase/	0.462	0.562	0.357	2e-43
TAIR|locus:2009180	387	AT1G06550 [Arabidopsis thalian	0.607	0.723	0.311	5.2e-43

TAIR|locus:2142050 AT4G13360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 1.1e-157, Sum P(2) = 1.1e-157
 Identities = 218/310 (70%), Positives = 261/310 (84%)

Query:   156 DVKEISTQNQLSE---MIE-VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY 211
             D+K ++ + Q  +   +++ VFTAEY+LIC I+ YKKPYISLMDG+TMGFG+G+SGHGRY
Sbjct:   112 DIKGVAAEIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRY 171

Query:   212 RIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 271
             R++TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG+TGKRIS PSDALF GLG
Sbjct:   172 RVITERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLGLTGKRISAPSDALFVGLG 231

Query:   272 TDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSE 331
             T YVPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE EA LK LLP I S FSS 
Sbjct:   232 THYVPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPESEAHLKSLLPHIESAFSSN 291

Query:   332 KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNE 391
             KS+++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL LTQKYFS VA A  K +NE
Sbjct:   292 KSIKETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYLTQKYFSNVACAKSKPENE 351

Query:   392 LSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEP 451
             L+ L+GVMK EYR+ALRS+LR DFAEGVRAVL+DKDQNPKWNP S+EEV+++EVEALF+P
Sbjct:   352 LATLNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQNPKWNPTSIEEVDENEVEALFKP 411

Query:   452 LGTGVEELKV 461
             L   VEELKV
Sbjct:   412 LSPEVEELKV 421

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2087218 AT3G24360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1108 (395.1 bits), Expect = 1.7e-150, Sum P(2) = 1.7e-150
 Identities = 216/307 (70%), Positives = 254/307 (82%)

Query:   155 GDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 214
             G V EI      S + +VFTAEYSLICKI+ Y+KPYISLMDG+TMGFG+G+SGHGRYR++
Sbjct:   112 GVVAEILMDKNTSLVQKVFTAEYSLICKIAGYRKPYISLMDGITMGFGLGLSGHGRYRVI 171

Query:   215 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 274
             TE+T+LAMPENGIGLFPDVGFSYIAA  PG GSVGAYLGMTG+RISTPSDALF GLGT Y
Sbjct:   172 TERTVLAMPENGIGLFPDVGFSYIAAHSPGEGSVGAYLGMTGRRISTPSDALFVGLGTHY 231

Query:   275 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 334
             VPSG LGSL+EA+L+   S+DP Q I A L+ YSSDPE E+ L++LLPQI S FS  KSV
Sbjct:   232 VPSGKLGSLREAILSADLSKDPQQHIQATLSNYSSDPETESHLQMLLPQIESAFSVSKSV 291

Query:   335 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSK 394
             ++ IEELKK Q S+E SVA+WA+EA+QG+ KGAPFSL LT KYFSKVA A GKT+N ++ 
Sbjct:   292 KETIEELKKFQQSSEASVAEWANEAVQGIEKGAPFSLYLTHKYFSKVACAKGKTNNAMAT 351

Query:   395 LSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT 454
             L+GVM  EYR+ALRS+LRSDF EGVRAVL DKDQNPKW PASL+EV+++EV+ALF PL  
Sbjct:   352 LNGVMITEYRIALRSALRSDFTEGVRAVLTDKDQNPKWKPASLDEVDETEVDALFMPLSP 411

Query:   455 GVEELKV 461
               EEL V
Sbjct:   412 EFEELNV 418

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
 Identities = 101/279 (36%), Positives = 152/279 (54%)

Query:   173 FTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD 232
             F++EY L   ++ Y K  +S+++G+ MG G G+S HGR+RI TE T+ AMPE  +GLFPD
Sbjct:    91 FSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPD 150

Query:   233 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTF 292
             VG SY  ++ PG    G Y+G+TG R+   ++ L  GL T +VPS  L +L+  L  +  
Sbjct:   151 VGASYFLSRLPG--FFGEYVGLTGARLDG-AEMLACGLATHFVPSTRLTALEADLCRIN- 206

Query:   293 SEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETS 351
             S DP      +L  Y+  P   +      L  I  CFS  ++V +II  L++ +++ E  
Sbjct:   207 SNDP-TFASTILDAYTQHPRLKQQSAYRRLDVIDRCFS-RRTVEEIISALER-EATQEAD 263

Query:   352 VAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL 411
                W    +Q + KG+P SL ++ +   +     G+       L    +    V ++  +
Sbjct:   264 --GWISATIQALKKGSPASLKISLRSIRE-----GRLQGVGQCLIREYRMVCHV-MKGEI 315

Query:   412 RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFE 450
               DF EG RA+LVDKD+NPKW P  LE++  S VE  FE
Sbjct:   316 SKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFE 354

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IGI;IDA

GO:0006574 "valine catabolic process" evidence=NAS;IMP

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
 Identities = 102/301 (33%), Positives = 162/301 (53%)

Query:   155 GDVKEISTQNQLSEM----IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 210
             GDV  +  QN +        + F  +Y+L   ++ Y KP +S+++G+ MG G G+S HGR
Sbjct:    66 GDVPPV-VQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGR 124

Query:   211 YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 270
             +RI TE T+ AMPE  +GLFPDVG SY  ++ PG    G Y+G+TG R+   ++ L  GL
Sbjct:   125 FRIATENTVFAMPETSLGLFPDVGASYFLSRLPG--FFGEYVGLTGARLDG-AELLACGL 181

Query:   271 GTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFS 329
              T +VPS  L +L+  L  V  S DP   +  +L  Y+  P   +      L  I  CFS
Sbjct:   182 ATHFVPSTRLTALETDLCKVG-SSDP-SFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFS 239

Query:   330 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTD 389
              ++++ +II  L++ +++ E     W+   ++ + K +P SL ++ +   +     G+  
Sbjct:   240 -KRTMEEIISALER-ETTQELD--DWSLTTIRALKKSSPSSLKISLRSIRE-----GRLQ 290

Query:   390 NELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALF 449
                  L+   +    V ++  L  D  EG RA+L+DKD+NPKW P  LE++  S V+  F
Sbjct:   291 GVGHCLTREYRMVCHV-MKGDLSKDLVEGCRAILIDKDRNPKWEPRRLEDMKDSMVDQFF 349

Query:   450 E 450
             E
Sbjct:   350 E 350

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

ASPGD|ASPL0000005013 AN6844 [Emericella nidulans (taxid:162425)]

 Score = 396 (144.5 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
 Identities = 107/319 (33%), Positives = 167/319 (52%)

Query:   155 GDVKEISTQNQLSE-----MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHG 209
             GDV  ++ QN+          + F  EY L   I+ Y KP+IS+MDG+TMG G+G+S H 
Sbjct:   122 GDVAALALQNEKGPEGQQASTDFFGLEYKLDHVIATYSKPFISVMDGITMGGGVGLSVHA 181

Query:   210 RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 269
              +RI TE+T+ AMPE  IG FPDVG S+   +  G   +G YL +T  R+ T   AL+AG
Sbjct:   182 PFRIATERTVFAMPETTIGFFPDVGGSFFLPRLDG--EIGTYLALTSARL-TGVQALYAG 238

Query:   270 LGTDYVPSGNLGSLKEALLAVTFSEDP----HQDIV-ALLAKYSSD-PEGEAPLKLLLPQ 323
             + T Y  S  LG+L + L  + F +        D++   +A++++  PE       L   
Sbjct:   239 IATHYFDSSVLGNLTQRLSELVFRDSATLQERLDLINRTMAEFATGLPEEPQLAGQLRSA 298

Query:   324 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383
             I  CF  + +V QI++ L++     E    +WA E L+ M + +P SL +  +   +V  
Sbjct:   299 IDRCFRHD-TVEQIMKALER-----EKKCKKWAQETLETMSQRSPTSLKVALRQM-RVGQ 351

Query:   384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKD-QNPKWNPASLEEVNQ 442
             A G        +    + EY +A R     DF EGV+A L+ K  +   W PA+L EV++
Sbjct:   352 AWG--------IRETFQREYEIAARFMQHPDFVEGVKARLMSKPPRQASWQPATLAEVSE 403

Query:   443 SEVEALFEPLGTGVEELKV 461
              +V+  F+ +  G E +++
Sbjct:   404 KDVDEFFK-IPQGKERIQL 421

GO:0005739 "mitochondrion" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2054517 AT2G30650 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
 Identities = 107/307 (34%), Positives = 159/307 (51%)

Query:   157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 216
             V++I  Q +L      F   Y+L   +S Y+KP +S+++G+ MG G G+S +GR+RI TE
Sbjct:    72 VRDI-LQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATE 130

Query:   217 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 276
              T+ AMPE  +GLFPDVG SY  ++ PG    G Y+G+TG R+   ++ L  GL T +VP
Sbjct:   131 NTVFAMPETALGLFPDVGASYFLSRLPG--FFGEYVGLTGARLDG-AEMLACGLATHFVP 187

Query:   277 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVR 335
             S +L +L+  L  V  S      I  +L  Y+  P   +      L  I  CFS +++V 
Sbjct:   188 SISLTALEAELYKVGSSNQTF--ISTILDAYAEYPHLNQHSSYHRLDVIDRCFS-KRTVE 244

Query:   336 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL 395
             +I   L++  +        W    +Q + K +P   CL     S  +   G+       L
Sbjct:   245 EIFSALEREVTQKPND---WLLATIQALEKASPS--CLK---ISLRSIREGRLQGVGQCL 296

Query:   396 SGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT- 454
                 +    V ++  +  DF EG RAVL+DKD+NPKW P  LE+V  S V+  FE +   
Sbjct:   297 IREYRMVCHV-MKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDE 355

Query:   455 -GVEELK 460
              G E+LK
Sbjct:   356 EGWEDLK 362

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q48KW7 PSPPH_1721 "Enoly-CoA hydratase/isomerase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 349 (127.9 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 94/297 (31%), Positives = 150/297 (50%)

Query:   155 GDVKEI--STQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 212
             GD++ +  S QN        F  EY L   I  Y+KP ++LMDG+ +G G+G+      R
Sbjct:    80 GDIRSLYESHQNGQDLHYTFFAEEYELDLTIHRYRKPILALMDGLVLGGGMGLVQGADLR 139

Query:   213 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 272
             +VTE++ L MPE  IG FPDVG SY  ++ PG   +G +LG+TG +I   +DAL+ GL  
Sbjct:   140 VVTERSRLGMPEVAIGYFPDVGGSYFLSRLPG--ELGTWLGVTGSQIGA-ADALYCGLAN 196

Query:   273 DYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEK 332
               + S  L  L   L  + +   P +D+   LAK ++      PL+ L P I   F    
Sbjct:   197 WSMNSEMLPRLDHMLDHLKWKSTPLKDLQGALAKLATQRLPYPPLETLRPAIDHFFGLP- 255

Query:   333 SVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL 392
              +  I+E+L   Q        +WA + +  M + +P ++ +T +   +     G+    L
Sbjct:   256 DIPSILEQL---QEVVIGDTREWALDTVGRMKRHSPLAMAVTLEMLRR-----GR---HL 304

Query:   393 SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALF 449
               L      E  +  +   R D  EG+RA+++DKD+ P+W  AS ++V+ + V+  F
Sbjct:   305 P-LQDCFAMELHLDRQWFERGDLIEGIRALIIDKDKKPQWKHASAQDVSSAHVQGFF 360

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0038326 CG5044 [Drosophila melanogaster (taxid:7227)]

 Score = 363 (132.8 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 86/220 (39%), Positives = 125/220 (56%)

Query:   155 GDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 214
             GDV+ +       E    F  EYS    I  YK PYI+++DG+TMG G+G+S HG+YR+ 
Sbjct:   105 GDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGGGVGLSVHGKYRVA 164

Query:   215 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 274
             +++TL AMPE  IGLFPDVG SY   +  G   +G YLG+TG R+   +D  ++G+ T Y
Sbjct:   165 SDRTLFAMPETAIGLFPDVGGSYFLPRLQG--KLGLYLGLTGYRLRG-ADVYYSGIATHY 221

Query:   275 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 334
               S  +  L+ ALL    ++D    +  LL KY S PE    L+ +L QI   FS++ SV
Sbjct:   222 CESSKIPDLETALLNCPDADD----VPELLQKYHSPPEKPFSLQPVLEQINKNFSAD-SV 276

Query:   335 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLT 374
               I+E L+   S       +WA + L+ + K +P S+ +T
Sbjct:   277 EGILENLQNDGS-------EWAKKTLETLSKMSPTSMKVT 309

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

TIGR_CMR|CBU_1856 CBU_1856 "enoyl-CoA hydratase/isomerase family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 332 (121.9 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 84/235 (35%), Positives = 131/235 (55%)

Query:   155 GDVKEI--STQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 212
             GD++ +  + +  L    + F  EY +   I  +KKPYI+L+DG+TMG G G+S HG +R
Sbjct:    94 GDIRTLYMNGKEHLQTAQKFFYDEYRMNAAIFHFKKPYIALLDGITMGGGAGVSVHGSHR 153

Query:   213 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 272
             + TE+ L AMPE  IG FPDVG  Y  ++     ++G YLG+TG RI    DA + GL  
Sbjct:   154 VATEQLLFAMPETAIGFFPDVGAGYFLSRCKN--NMGYYLGLTGDRIGA-GDAKWLGLVN 210

Query:   273 DYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ---ITSCFS 329
               +PS    +L EAL +  FS + H+ +  ++ ++S + E   PL  L  Q   I SCF+
Sbjct:   211 HVIPSEKQDALIEALASAPFSSEDHRQVTDIITEFSIELE---PL--LFNQKTLIESCFA 265

Query:   330 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384
             +E SV  I+  L++          +W+   L+ +   +P SL +T ++ ++ ASA
Sbjct:   266 AE-SVEAIVSRLEERNE-------EWSKTVLETLLSKSPTSLKVTYEHLTR-ASA 311

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0016853 "isomerase activity" evidence=ISS

TAIR|locus:2009180 AT1G06550 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 93/299 (31%), Positives = 155/299 (51%)

Query:   155 GDVKEI-STQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 213
             GD+K     Q      +EV    Y L   I  YKK  +SL++G++MG G  +    ++ +
Sbjct:    72 GDLKVFYHGQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFSV 131

Query:   214 VTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 273
             VTEKT+ A PE   G   D GFSYI ++ PG   +G +L +TG R++   + +  G+ T 
Sbjct:   132 VTEKTVFATPEASFGFHTDCGFSYIHSRLPG--HLGEFLALTGARLNG-KELVAIGMATH 188

Query:   274 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ--ITSCFSSE 331
             +VPSG L  L+  L+++  S D   D+V    +  S+        +L  Q  I  CFS E
Sbjct:   189 FVPSGKLMDLEARLVSLD-SGDA--DVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKE 245

Query:   332 KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNE 391
              SV+QII+     ++ A     +W    ++G+ + +P  L +       +     +T ++
Sbjct:   246 -SVKQIIQAF---EAEASKDGNEWITPVIKGLKRSSPTGLKIV---LQSIREGRKQTLSD 298

Query:   392 LSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFE 450
               K     +    + LR ++  D  EG+RA+ +DKD +PKWNPA+L+EV+  ++ ++F+
Sbjct:   299 CLKKE--FRLTLNI-LRKTISPDMYEGIRALTIDKDNSPKWNPATLDEVDDEKINSVFK 354

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9T0K7	HIBC6_ARATH	3, ., 1, ., 2, ., -	0.6748	0.9067	0.9928	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	0.766
3rd Layer	3.1.2.4	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	461
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-120
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	1e-66
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	9e-58
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	1e-49
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	3e-48
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	3e-41
pfam13766	117	pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal	2e-34
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	3e-33
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	1e-21
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	7e-20
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	8e-17
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	4e-14
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	5e-14
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	3e-13
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	4e-13
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	5e-12
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	7e-12
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	7e-12
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	8e-12
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	9e-12
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	1e-11
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	7e-11
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	1e-10
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	2e-10
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	6e-10
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	7e-10
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	7e-10
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	1e-09
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	1e-09
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	2e-09
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	2e-09
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	3e-09
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	6e-09
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	2e-08
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	3e-08
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	6e-08
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	1e-07
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	1e-07
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	1e-07
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	1e-07
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	2e-07
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	2e-07
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	2e-07
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	2e-07
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	2e-07
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	3e-07
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	4e-07
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	4e-07
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	6e-07
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	7e-07
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	7e-07
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	3e-06
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	3e-06
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	4e-06
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	5e-06
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	2e-05
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	4e-05
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	5e-05
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	7e-05
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	8e-05
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	9e-05
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	9e-05
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	1e-04
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	1e-04
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	4e-04
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	5e-04
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	9e-04
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	0.001
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	0.002
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	0.002

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score =  353 bits (909), Expect = e-120
 Identities = 150/379 (39%), Positives = 206/379 (54%), Gaps = 49/379 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDM--DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            GV VITL+RPKALNA++L+M   I     LD WE D  V  V+IEG+G R FCAG DI+
Sbjct: 11  GGVGVITLNRPKALNALSLEMIRAIDAA--LDAWEDDDAVAAVVIEGAGERGFCAGGDIR 68

Query: 133 GVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYIS 192
            +    +               GD                F  EY L   I+ Y KPYI+
Sbjct: 69  ALYEAARA--------------GDPLAADR---------FFREEYRLNALIARYPKPYIA 105

Query: 193 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYL 252
           LMDG+ MG G+GIS HG +RIVTE+T +AMPE GIG FPDVG +Y  ++ PG   +G YL
Sbjct: 106 LMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGA--LGTYL 163

Query: 253 GMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE 312
            +TG RIS  +DAL+AGL   +VPS +L +L +AL+++ +       + A LA +++   
Sbjct: 164 ALTGARIS-AADALYAGLADHFVPSADLPALLDALISLRWDSGA-DVVDAALAAFATPAP 221

Query: 313 GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLC 372
               L      I  CF+ + +V  II  L+           ++A +    +   +P SL 
Sbjct: 222 AS-ELAAQRAWIDECFAGD-TVEDIIAALEADGG-------EFAAKTADTLRSRSPTSLK 272

Query: 373 LTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 432
           +T     ++  A G T      L   ++ E R+AL      DF EGVRAVL+DKD+NPKW
Sbjct: 273 VT---LEQLRRARGLT------LEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKW 323

Query: 433 NPASLEEVNQSEVEALFEP 451
           +PA+LE+V   +VEA F P
Sbjct: 324 SPATLEDVTPEDVEAFFAP 342

Length = 342

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  217 bits (555), Expect = 1e-66
 Identities = 130/409 (31%), Positives = 214/409 (52%), Gaps = 50/409 (12%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
           A      AEE V G      V VITL+RP+ LN ++L +      FL++WE D  V+ ++
Sbjct: 2   AQQVQNPAEEVVLGEEK-GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELII 60

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE 176
           I+G+G RAF AG D+K +  + ++  ++ L                        EV    
Sbjct: 61  IKGAG-RAFSAGGDLK-MFYDGRESDDSCL------------------------EVVYRM 94

Query: 177 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 236
           Y L   I  YKK  ++L+ G+ MG G G+    ++R+VTEKT+ A PE  +G   D GFS
Sbjct: 95  YWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFS 154

Query: 237 YIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP 296
           YI ++ P  G +G YL +TG R++   + +  GL T +VPS  L  L++ LL +   ++ 
Sbjct: 155 YILSRLP--GHLGEYLALTGARLNG-KEMVACGLATHFVPSEKLPELEKRLLNLNSGDE- 210

Query: 297 HQDIVALLAKYSSDPEGEAPLKL-LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQW 355
              +   + ++S D + +    L     I  CFS + +V +II+     +S A  +  +W
Sbjct: 211 -SAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-TVEEIIKAF---ESEASKTGNEW 265

Query: 356 ADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV---ALRSSLR 412
             E L+G+ + +P  L +T +   +     G+  +    L+  +K E+R+    LRS++ 
Sbjct: 266 IKETLKGLRRSSPTGLKITLRSIRE-----GRKQS----LAECLKKEFRLTMNILRSTVS 316

Query: 413 SDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 461
            D  EG+RA+++DKD  PKWNP++L+EV   +V+ +F+P     EEL++
Sbjct: 317 DDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPF-KAREELQL 364

Length = 379

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score =  194 bits (495), Expect = 9e-58
 Identities = 134/387 (34%), Positives = 193/387 (49%), Gaps = 60/387 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V ++TL+RPK LNA++  M  +       +E DP VK V+++G G RAFCAG D+  V
Sbjct: 17  SSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAV 75

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
           V +I+                       Q         F+ EY L   ++ Y K  +S++
Sbjct: 76  VRDIE-----------------------QGNWRLGANFFSDEYMLNYVMATYSKAQVSIL 112

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G+ MG G G+S HGR+RI TE T+ AMPE  +GLFPDVG SY  ++ P  G  G Y+G+
Sbjct: 113 NGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLP--GFFGEYVGL 170

Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGE 314
           TG R+   ++ L  GL T +VPS  L +L EA L    S DP      +L  Y+  P   
Sbjct: 171 TGARLDG-AEMLACGLATHFVPSTRLTAL-EADLCRIGSNDP-TFASTILDAYTQHPR-- 225

Query: 315 APLKLLLPQ--------ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG 366
                L PQ        I  CF S ++V +II  L++    A      W    +Q + K 
Sbjct: 226 -----LKPQSAYHRLDVIDRCF-SRRTVEEIISALERE---ATQEADGWISATIQALKKA 276

Query: 367 APFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV---ALRSSLRSDFAEGVRAVL 423
           +P SL ++ +            +  L  +   +  EYR+    ++  +  DF EG RA+L
Sbjct: 277 SPASLKISLRSIR---------EGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAIL 327

Query: 424 VDKDQNPKWNPASLEEVNQSEVEALFE 450
           VDKD+NPKW P  LE++  S VE  FE
Sbjct: 328 VDKDKNPKWEPRRLEDMKDSMVEQYFE 354

Length = 381

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  174 bits (442), Expect = 1e-49
 Identities = 126/385 (32%), Positives = 194/385 (50%), Gaps = 48/385 (12%)

Query: 82  LDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141
           L+RP +LNA+ + M  + K   + WE +P +  VL++GSG RAFC+G D   VV+     
Sbjct: 57  LNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGAD---VVS----- 107

Query: 142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGF 201
                          +  +  +  + E    F   Y  +     Y KP +++MDG+TMG 
Sbjct: 108 ---------------LYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGC 152

Query: 202 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIST 261
           G GIS  G +R+VT+KT+ A PE  +G  PD G SY  ++ P  G +G YL +TG++++ 
Sbjct: 153 GAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLP--GYLGEYLALTGQKLNG 210

Query: 262 PSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS--DPEGEAPLKL 319
             + +  GL T Y  +  L  L E  L    ++DP   I   LA+Y     P+  + L  
Sbjct: 211 -VEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAV-IEDSLAQYGDLVYPDKSSVLH- 266

Query: 320 LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFS 379
            +  I  CF  + +V +IIE L   ++ A +S  +W  +AL+ + + +P SL +T +   
Sbjct: 267 KIETIDKCFGHD-TVEEIIEAL---ENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIR 322

Query: 380 KVASAHGKTDNELSKLSGVMKYEYRVAL---RSSLRSDFAEGVRAVLVDKDQNPKWNPAS 436
                    +     L   +  EYR++L      +  DF EGVRA LVDKD  PKW+P S
Sbjct: 323 ---------EGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDFAPKWDPPS 373

Query: 437 LEEVNQSEVEALFEPLGTGVEELKV 461
           L EV++  V+  F PL     EL++
Sbjct: 374 LGEVSKDMVDCYFTPLDESESELEL 398

Length = 407

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  170 bits (431), Expect = 3e-48
 Identities = 117/373 (31%), Positives = 192/373 (51%), Gaps = 48/373 (12%)

Query: 82  LDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141
           L+RP ALNA+   M  + +     WE DP +  V+++GSG RAFCAG DI  +       
Sbjct: 52  LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLY------ 104

Query: 142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGF 201
                             +  +     + E F++ YS I  +  Y KP++++++GVTMG 
Sbjct: 105 -----------------HLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGG 147

Query: 202 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIST 261
           G G+S  G +R+ T++T+ A PE  IG  PD G S+  +  P  G +G YLG+TG ++S 
Sbjct: 148 GTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLP--GRLGEYLGLTGLKLSG 205

Query: 262 PSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS--SDPEGEAPLKL 319
            ++ L  GL T Y+ S  +  ++E L  +  ++DP   + + L K +  + PE    ++ 
Sbjct: 206 -AEMLACGLATHYIRSEEIPVMEEQLKKL-LTDDPSV-VESCLEKCAEVAHPEKTGVIR- 261

Query: 320 LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFS 379
            +  +  CFS + +V +II+ L+      + +   W    L+ + + +P SL        
Sbjct: 262 RIDLLEKCFSHD-TVEEIIDSLEIEAGRRKDT---WCITTLRRLKESSPLSL-------- 309

Query: 380 KVASAHGKTDNELSKLSGVMKYEYRVALR---SSLRSDFAEGVRAVLVDKDQNPKWNPAS 436
           KVA      +  L  L   +  EYR++L+     +  +F EGVRA L+DKD+ PKW+P S
Sbjct: 310 KVA-LRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKDEAPKWDPPS 368

Query: 437 LEEVNQSEVEALF 449
           LE+V++  V+  F
Sbjct: 369 LEKVSEDMVDDYF 381

Length = 401

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  145 bits (367), Expect = 3e-41
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 28/208 (13%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
              GVA ITL+RP+  NA++L+M  +  + LDE E+DP V+ V++ G+G +AFCAG D+K
Sbjct: 5   RDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLK 63

Query: 133 GVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYIS 192
            + A                               E          L+  +    KP I+
Sbjct: 64  ELAALSDAGE-------------------------EARAFIRELQELLRALLRLPKPVIA 98

Query: 193 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYL 252
            ++G  +G G+ ++     RI  E     +PE  +GL P  G +    +   G +    L
Sbjct: 99  AVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLV-GPARAREL 157

Query: 253 GMTGKRISTPSDALFAGLGTDYVPSGNL 280
            +TG+RIS   +AL  GL  + VP   L
Sbjct: 158 LLTGRRIS-AEEALELGLVDEVVPDEEL 184

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|205939 pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal region

 Score =  124 bits (314), Expect = 2e-34
 Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 17/134 (12%)

Query: 317 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQK 376
           L      I  CFS + +V +I+  L+   S       +WA + L+ +  G+P SL +T  
Sbjct: 1   LAEHREAIDRCFSGD-TVEEILAALEADGS-------EWAAKTLKTLRSGSPLSLKVT-- 50

Query: 377 YFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS 436
              ++    G +      L+  ++ EYR+A+R     DFAEGVRA+L+DKD+NPKWNPA+
Sbjct: 51  -LEQLRRGRGLS------LAECLRMEYRLAVRCMAHGDFAEGVRALLIDKDRNPKWNPAT 103

Query: 437 LEEVNQSEVEALFE 450
           LEEV   +V+A F 
Sbjct: 104 LEEVTAEDVDAFFA 117

This is the C-terminal region of enoyl-CoA hydratase. Length = 117

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  125 bits (317), Expect = 3e-33
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 33/204 (16%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+AVITL+RP+ LNA+NL+M  +    LDE E+DP V+ V++ G+G +AF AG D+K  
Sbjct: 13  DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLK-- 69

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                   E+ +    +    +      L+  +++  KP I+ +
Sbjct: 70  ------------------------ELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAV 105

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK--GPGGGSVGAYL 252
           +G  +G G+ ++     RI  E     +PE  +GL P  G +    +  G G       L
Sbjct: 106 NGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGR---AKEL 162

Query: 253 GMTGKRISTPSDALFAGLGTDYVP 276
            +TG+ I + ++AL  GL  + VP
Sbjct: 163 LLTGEPI-SAAEALELGLVDEVVP 185

Length = 257

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 93.3 bits (232), Expect = 1e-21
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 33/167 (19%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G A++T+ RP  LNA+NL+M  ++ S L +  +DP+++ V++ G G RAFC G D+    
Sbjct: 9   GYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFA 67

Query: 136 AEIQKD-RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
            +   D R T                            F   Y +I +I    K YIS +
Sbjct: 68  PDFAIDLRET----------------------------F---YPIIREIRFSDKIYISAI 96

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK 241
           +GVT G  IGI+    ++  +           +GL  D G +Y   K
Sbjct: 97  NGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLK 143

Length = 248

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 88.8 bits (221), Expect = 7e-20
 Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 41/220 (18%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSF---LDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           +GV  IT++RP   NA+   M   Y++    L+   +DP V+ V++ G+G RAF AG DI
Sbjct: 13  DGVLTITINRPDKKNALTAAM---YQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDI 68

Query: 132 KGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYI 191
           K       K                           E+  V       +  I+   KP +
Sbjct: 69  KDFPKAPPK------------------------PPDELAPVNRF----LRAIAALPKPVV 100

Query: 192 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI--AAKGPGGGSVG 249
           + ++G  +G G+ ++        +E    ++P   +GL PD G S +     G    +  
Sbjct: 101 AAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGR---ARA 157

Query: 250 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 289
           A + + G+ +S   +AL  GL    VP+  L +  +A  A
Sbjct: 158 AEMLLLGEPLSAE-EALRIGLVNRVVPAAELDAEADAQAA 196

Length = 259

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 79.3 bits (196), Expect = 8e-17
 Identities = 74/271 (27%), Positives = 116/271 (42%), Gaps = 41/271 (15%)

Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
             GVAVI LDRP+A+NA++ ++  +    L++ E DP VK +++ G GP AF AG DIK 
Sbjct: 5   EAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTG-GPGAFSAGADIKE 63

Query: 134 VVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISL 193
           + A                     ++     +             L  ++ +  KP I+ 
Sbjct: 64  MAA-----------------EPLAQQAQFSLEA----------QDLWSRLEDLPKPVIAA 96

Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 253
           ++G  +G G+ ++    YRI  +     +PE  +G+ P  G +    +  G   V A L 
Sbjct: 97  VNGYALGGGLELALACDYRIAADNAKFGLPEVKLGIIPGAGGTQRLPRIIG---VSAALE 153

Query: 254 M--TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSS- 309
           M  TG+RI    +AL  GL    VP   L    EA+ LA   ++ P   + AL A   + 
Sbjct: 154 MLLTGRRIR-AQEALKMGLVDKVVPEEQLVE--EAIELAQRLADKPPLALAALKAAMRAA 210

Query: 310 --DPEGEAPLKLLLPQITSCFSSEKSVRQII 338
             D   E      L    + FS++     I 
Sbjct: 211 LEDALPEV-RAQALRLYPAPFSTDDVKEGIQ 240

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 72.1 bits (177), Expect = 4e-14
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 27/159 (16%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            +AV+T++RPKALNA+N +   +  + LD+ E+D  V  V++ G+G +AF AG DI    
Sbjct: 13  HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADI---- 68

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
           +E+ KD N              +E      L    +VF        K+    KP I+ ++
Sbjct: 69  SEM-KDLN-------------EEEGRKFGLLGN--KVFR-------KLENLDKPVIAAIN 105

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG 234
           G  +G G  +S     RI +EK     PE G+G+ P  G
Sbjct: 106 GFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFG 144

Length = 260

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 71.7 bits (176), Expect = 5e-14
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 23/159 (14%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G+A++TL+RP+ LNA+N  +  +  + LD  E D  V+ V++ G+G RAF AG DI    
Sbjct: 12  GIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFS 71

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
           A +    +  L           ++   + Q            ++  ++  + KP I+ ++
Sbjct: 72  ASVAAGADVAL-----------RDFVRRGQ------------AMTARLEAFPKPVIAAVN 108

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG 234
           G+  G G  I+      I +E+ L A PE  +G+ P  G
Sbjct: 109 GLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFG 147

Length = 260

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 28/196 (14%)

Query: 65  EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRA 124
            + +  +     V  ITL+RP+A NA++L +  + ++ L +   +  V+ V++ G+G +A
Sbjct: 2   LQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKA 61

Query: 125 FCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKIS 184
           FCAG D+K    E        +   V L             +   +E           + 
Sbjct: 62  FCAGADLK----ERAGMNEEQVRHAVSL-------------IRTTME----------MVE 94

Query: 185 EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 244
           +  +P I+ ++G+ +G G+ ++    +RI  E   L + E  + + P  G +    +  G
Sbjct: 95  QLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIG 154

Query: 245 GGSVGAYLGMTGKRIS 260
            G     L  TG+RIS
Sbjct: 155 VGRAKE-LIYTGRRIS 169

Length = 260

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 66/274 (24%), Positives = 106/274 (38%), Gaps = 71/274 (25%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G+  IT + P   NAM+LDM       L   E D  ++ V++ G+G +AF +G DI    
Sbjct: 20  GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADI---- 75

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
           ++ ++ R+              + ++   Q  E      A  +    +++Y KP I+ + 
Sbjct: 76  SQFEESRSDA------------EAVAAYEQAVE------AAQAA---LADYAKPTIACIR 114

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK------GPGGGSVG 249
           G  +G G+GI+     RI  E +   +P   +GL    G+ Y   K      GP   S  
Sbjct: 115 GYCIGGGMGIALACDIRIAAEDSRFGIPAARLGL----GYGYDGVKNLVDLVGP---SAA 167

Query: 250 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS 309
             L  T +R    ++AL  GL              + L           D  A +A    
Sbjct: 168 KDLFYTARRF-DAAEALRIGLVHRVTA-------ADDLETAL------ADYAATIA---- 209

Query: 310 DPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKK 343
              G APL L            ++ ++ I EL K
Sbjct: 210 ---GNAPLTL------------RAAKRAIAELLK 228

Length = 269

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 39/228 (17%)

Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           A  F         V ++TL+RP+ +NA++LD   + +   D++ +DP     ++ G+G +
Sbjct: 2   ALPFST-VERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDK 60

Query: 124 AFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKI 183
           AF AG D+K   A     R  P         G +                T+ + L    
Sbjct: 61  AFSAGNDLKEQAA--GGKRGWP-----ESGFGGL----------------TSRFDL---- 93

Query: 184 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 243
               KP I+ ++GV MG G  ++      +  E    A+PE  +GL    G  +   +  
Sbjct: 94  ---DKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQI 150

Query: 244 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVT 291
           G       + +TG+R++   + L  G   + VP+G      E L A  
Sbjct: 151 GLKRAMGMI-LTGRRVTAR-EGLELGFVNEVVPAG------ELLAAAE 190

Length = 259

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 52/168 (30%), Positives = 70/168 (41%), Gaps = 30/168 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGMDIKG 133
             VA I L+RP+ALNA++  M  +    L E  ES   +  V++ G+G R F AG DIK 
Sbjct: 14  GRVATIMLNRPEALNALDEPMLKELLQALKEVAESSAHI--VVLRGNG-RGFSAGGDIK- 69

Query: 134 VVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISL 193
                       L      K   V      N +SE++      Y++        K  IS 
Sbjct: 70  ----------MMLSSNDESKFDGV-----MNTISEIVVTL---YTM-------PKLTISA 104

Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK 241
           + G   G G+ I+    Y I      LAM   GIGL PD G  +   K
Sbjct: 105 IHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQK 152

Length = 260

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 51/241 (21%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK--- 132
            V  +TL+RP+A NA++  +     + L E ++D  V  V++ G+ P AFCAG+D+K   
Sbjct: 13  RVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADP-AFCAGLDLKELG 71

Query: 133 -GVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYI 191
               A   +D      P  P                                   +KP I
Sbjct: 72  GDGSAYGAQDALPNPSPAWP---------------------------------AMRKPVI 98

Query: 192 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY 251
             ++G  +  G+ ++      I +E+   A     +G+ P  G S    + P    VG  
Sbjct: 99  GAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLS---VRLP--QKVGIG 153

Query: 252 ----LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAK 306
               + +TG  +   +DAL AGL T+ VP   L  L  A  LA + + +    + AL A 
Sbjct: 154 RARRMSLTGDFLD-AADALRAGLVTEVVPHDEL--LPRARRLAASIAGNNPAAVRALKAS 210

Query: 307 Y 307
           Y
Sbjct: 211 Y 211

Length = 258

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 65.2 bits (159), Expect = 8e-12
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 33/148 (22%)

Query: 58  TMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           TM    +E  +      NG+A IT++RPKALNA+   M ++  +     + D  VK +++
Sbjct: 1   TMTQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIIL 60

Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEY 177
            GSG RAFC+G+D+                 +   K GDVK++ T + +++M        
Sbjct: 61  TGSG-RAFCSGVDLTA--------------AEEVFK-GDVKDVET-DPVAQM-------- 95

Query: 178 SLICKISEYKKPYISLMDG--VTMGFGI 203
                    +KP I  ++G  +T GF I
Sbjct: 96  ------ERCRKPIIGAINGFAITAGFEI 117

Length = 265

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 67.2 bits (164), Expect = 9e-12
 Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 37/212 (17%)

Query: 54  RTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRV 112
           R F+T AA  A       V    VAV+ +D P + +N ++ ++  ++K  ++E  ++  +
Sbjct: 1   RLFSTSAALMARTHRHYEVK-GDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAI 59

Query: 113 KCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQ-LSEMIE 171
           K  ++    P +F AG DI+ + A                 C   +E++  +Q   EM E
Sbjct: 60  KSAVLISGKPGSFVAGADIQMIAA-----------------CKTAQEVTQLSQEGQEMFE 102

Query: 172 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE--KTLLAMPENGIGL 229
                     +I + +KP ++ + G  +G G+ ++    YRI T+  KTLL +PE  +GL
Sbjct: 103 ----------RIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGL 152

Query: 230 FPDVGFSYIAAKGPGGGSVGAYLGM--TGKRI 259
            P  G +    + P    V A L M  TGK+I
Sbjct: 153 LPGAGGT---QRLPKLTGVPAALDMMLTGKKI 181

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 72  VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           V  +GVAVITL+RP  LNA    M+ +  + +D  E+DP V+ +++ G+G R FCAG D+
Sbjct: 11  VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADM 69

Query: 132 KG 133
             
Sbjct: 70  GE 71

Length = 272

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 62.1 bits (151), Expect = 7e-11
 Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 37/208 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  + LDRP+A NA+  +M    +S  ++ ++D   + V++  S P  FCAG D+K  
Sbjct: 3   SGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLK-- 60

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                  +   + +++ + +    + +S +  +S    P I+++
Sbjct: 61  ----------------------ERRKMSPSEVQKFVNSLRSTFSSLEALS---IPTIAVV 95

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG----FSYIAAKGPGGGSVGA 250
           +G  +G G+ ++     RI  E+ +  +PE G+ + P  G       +      G S   
Sbjct: 96  EGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLV-----GRSRAK 150

Query: 251 YLGMTGKRISTPSDALFAGLGTDYVPSG 278
            L  TG+RI    +A   GL    VP+G
Sbjct: 151 ELIFTGRRIGA-REAASMGLVNYCVPAG 177

Length = 251

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           +GVA +TL+RP+A NA++  M    ++ LD   +DP V+ V++  +G  AFCAG D+K
Sbjct: 19  DGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK-AFCAGHDLK 75

Length = 266

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 29/186 (15%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GVA +TL+RP  LN+   +M ++ +  L+  E D   + +++ G+G R FCAG D+    
Sbjct: 8   GVARLTLNRPDKLNSFTAEMHLELREALERVERD-DARALMLTGAG-RGFCAGQDL---- 61

Query: 136 AEIQKDRN-TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                +RN TP                    L   IE F     L+ ++     P +  +
Sbjct: 62  ----SERNPTPGGAP---------------DLGRTIETFYN--PLVRRLRALPLPVVCAV 100

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +GV  G G  ++      +  E          IGL PD G ++   +  G       L M
Sbjct: 101 NGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMG-LAM 159

Query: 255 TGKRIS 260
            G+++ 
Sbjct: 160 LGEKLD 165

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 52/233 (22%)

Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           A + V      +GVA++ L+RP+A NA+N+++  +      E   DP ++ +++ G G +
Sbjct: 5   ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEK 63

Query: 124 AFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKI 183
            F AG DIK                           I    + +E              I
Sbjct: 64  VFAAGADIKEFA--------------------TAGAIEMYLRHTER---------YWEAI 94

Query: 184 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 243
           ++  KP I+ ++G  +G G  ++ H    +  E      PE  +GL P          G 
Sbjct: 95  AQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMP----------GA 144

Query: 244 GGG-----SVGAY----LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           GG      +VG +    + +TG  +  P +AL  GL ++ V      +L  AL
Sbjct: 145 GGTQRLVRAVGKFKAMRMALTGCMVPAP-EALAIGLVSEVVEDEQ--TLPRAL 194

Length = 261

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 30/160 (18%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            VAVITL+ P A NA++  +  +    LD+ E D  V+ V+I G G R F AG DI    
Sbjct: 11  HVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADI---- 64

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
                                 KE ++  +  +  E+         ++ ++ KP I+ + 
Sbjct: 65  ----------------------KEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF 235
           G  +G G+ ++     R  TE   L +PE  +GL P  GF
Sbjct: 103 GAALGGGLELAMSCHIRFATESAKLGLPELNLGLIP--GF 140

Length = 257

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           +G+A ITL+RP  LNA  + M  +     D  ++D  V+ V++ G+G RAFCAG D+  
Sbjct: 12  DGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSA 69

Length = 296

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V +IT++RP+A NA+N  +     + LDE ++DP +   ++ G+G   FCAGMD+K   
Sbjct: 12  RVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFA 70

Query: 136 AEIQKDRNTPLVP 148
                    P +P
Sbjct: 71  R-----GERPSIP 78

Length = 254

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            G+A IT +RP A NAM   M        +   +DP ++ V++ G+G +AF AG DI 
Sbjct: 16  GGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIA 73

Length = 262

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
           GVA +TL+RP  LN+   +M  + +  LD+ E D   + +L+ G+G R FCAG D
Sbjct: 13  GVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQD 65

Length = 262

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
            +A ITL+RP+  NA+  D  ++ ++ ++  + DP V  +L+ G+G + FCAG D+  
Sbjct: 19  RIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSA 75

Length = 302

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           V +ITL+RPKALNA+N  +  +  + L  +++D  +  ++I GS  +AF AG DIK
Sbjct: 14  VGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIK 68

Length = 257

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 27/154 (17%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            VAV+TLD P  +NA++ ++  +  +  DE    P V+ V++ G+G + FCAG D+K   
Sbjct: 13  HVAVVTLDNP-PVNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLK--- 67

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
                    P V K P   GD++  + + +     E F A       I E  KP I+ ++
Sbjct: 68  -------GRPDVIKGP---GDLRAHNRRTR-----ECFHA-------IRECAKPVIAAVN 105

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL 229
           G  +G G+G+       + +E  +  +PE  +GL
Sbjct: 106 GPALGAGLGLVASCDIIVASENAVFGLPEIDVGL 139

Length = 257

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 23/198 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP  +NA++  M  +  + +   + D  ++ V++ G G  AFCAG+D+K V
Sbjct: 11  DGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSV 69

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
            +    +    L  ++P      + +S   +    + V                P I+ +
Sbjct: 70  AS-SPGNAVKLLFKRLPGNANLAQRVSLGWR---RLPV----------------PVIAAL 109

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +GV  G G+ I+     RI    T L++ E   GL PD+    ++ +G     V   L  
Sbjct: 110 EGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMA-GTVSLRGLVRKDVARELTY 168

Query: 255 TGKRISTPSDALFAGLGT 272
           T  R+ +  +AL  GL T
Sbjct: 169 TA-RVFSAEEALELGLVT 185

Length = 262

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 23/164 (14%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP-RVKCVLIEGSGPRAFCAGMDIKGV 134
           GVA++TLD P+ +NA+++DM       LD  E     V+C+++ G+G R FC G +++G 
Sbjct: 13  GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGR 71

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
            +  ++  +           G   E              TA +  + ++     P ++ +
Sbjct: 72  GSGGRESDSGG-------DAGAALE--------------TAYHPFLRRLRNLPCPIVTAV 110

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 238
           +G   G G+  +  G   +             IGL PD G +++
Sbjct: 111 NGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWL 154

Length = 266

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           +G+A +TL+RP+  NAM+  ++ +    LD  E D     +++ G+G  A+ AGMD+K
Sbjct: 16  DGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLK 72

Length = 275

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 33/190 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + +A +TL+RP+  N  N+ M  +    L   E DP V+ +LI  +G   F  G D+  +
Sbjct: 10  DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGK-VFSVGGDLVEM 68

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
              + +D    LV    L    V EIS                     I +  KP I  +
Sbjct: 69  KRAVDEDDVQSLVKIAEL----VNEISF-------------------AIKQLPKPVIMCV 105

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----A 250
           DG   G    ++    + I + KT       G+GL PD G  ++  +     ++G     
Sbjct: 106 DGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTR-----AIGLNRAT 160

Query: 251 YLGMTGKRIS 260
           +L MTG+ ++
Sbjct: 161 HLAMTGEALT 170

Length = 255

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 73  HPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           HP   +A+ITL+RP+ +N+M  D+ +  K  L E   D  V+ V++ G+G R F +G D 
Sbjct: 15  HPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADH 73

Query: 132 K 132
           K
Sbjct: 74  K 74

Length = 276

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 26/190 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V  + L+RP   NA++LD   ++   L   + +P V  +++ G+G   FC+G+D+K  
Sbjct: 16  SSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDH-FCSGIDLK-T 73

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQ--NQLSEMIEVFTAEYSLICKISEYKKPYIS 192
           +  I +  ++          GD      +   ++  + +  TA       I + +KP I+
Sbjct: 74  LNSISEQSSS----------GDRGRSGERLRRKIKFLQDAITA-------IEQCRKPVIA 116

Query: 193 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG--GGSVGA 250
            + G  +G G+ I      R  +E    ++ E  + +  D+G      + P   G     
Sbjct: 117 AIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLG---TLQRLPSIVGYGNAM 173

Query: 251 YLGMTGKRIS 260
            L +TG+R S
Sbjct: 174 ELALTGRRFS 183

Length = 275

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEW---ESDPRVKCVLIEGSGPRAFCAGM 129
            P GV  I L+ P ALNA +  M   ++   D W   + DP V+ VLI G G +AF AG 
Sbjct: 18  PPPGVLEIVLNGPGALNAADARM---HRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGG 73

Query: 130 DIKGVVAEIQKD 141
           D+  +V E+  D
Sbjct: 74  DL-ALVEEMADD 84

Length = 268

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 50/211 (23%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V ++TL+RP+A NA+N  +  +  + L+   +D  +   +I G+  R F AG D+  + 
Sbjct: 11  RVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMA 69

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
              +KD    L    P             QL + ++ F              KP I+ ++
Sbjct: 70  ---EKDLAATLNDPRP-------------QLWQRLQAFN-------------KPLIAAVN 100

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-----SVGA 250
           G  +G G  ++      I  E     +PE  +G+ P          G GG      SVG 
Sbjct: 101 GYALGAGCELALLCDIVIAGENARFGLPEITLGIMP----------GAGGTQRLIRSVGK 150

Query: 251 YLGM----TGKRISTPSDALFAGLGTDYVPS 277
            L      TG+ I T   A  AGL ++  P 
Sbjct: 151 SLASQMVLTGESI-TAQQAQQAGLVSEVFPP 180

Length = 255

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 30/215 (13%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            VA +TL+RP   NA N  +  +  +     ++D  V+ V++ G+G  AFCAG D+  + 
Sbjct: 13  QVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGK-AFCAGADLNWMK 71

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
                  +                     +L++M+            I    KP I+ + 
Sbjct: 72  KMAGYSDDENRA--------------DARRLADMLRA----------IYRCPKPVIARVH 107

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGM 254
           G     G+G+       +  +  +  + E  +GL P     Y I A G           +
Sbjct: 108 GDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGER---AARRYFL 164

Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 289
           T +R    ++AL  GL  + VP+  L +  + LLA
Sbjct: 165 TAERF-DAAEALRLGLVHEVVPAEALDAKVDELLA 198

Length = 262

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 30/203 (14%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
             +GVA+IT++ P   NA+  +M  + ++ +   E+DP V  +++ G+G  AFCAG D+ 
Sbjct: 9   VDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAGADLT 67

Query: 133 GVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYIS 192
            + A   +                      ++ L  + + F A       ++    P I+
Sbjct: 68  ALGAAPGRP--------------------AEDGLRRIYDGFLA-------VASCPLPTIA 100

Query: 193 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYL 252
            ++G  +G G+ ++     RI   K L       +GL P  G +++  +  G     A L
Sbjct: 101 AVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAAL 160

Query: 253 GMTGKRISTPSDALFAGLGTDYV 275
            + G R    + A+  GL     
Sbjct: 161 -LFGMRFDAEA-AVRHGLALMVA 181

Length = 249

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK-- 132
           + VA +TL+RP   NAMN     +        ++DP V+ V++ GSG + F  G+D+   
Sbjct: 14  DHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAM 72

Query: 133 -GVVAEIQKD 141
            GV  ++ KD
Sbjct: 73  AGVFGQLGKD 82

Length = 272

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           ++T++RP+A NA++ +M        D  ++DP ++  ++ G+G  AFCAGMD+K 
Sbjct: 17  IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGG-AFCAGMDLKA 70

Length = 263

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 28/221 (12%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GVA +TL+RP+  NA++  M  +  +      +D  V+ V++ G+G ++FCAG D+  + 
Sbjct: 14  GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMR 72

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
           A++  DR T               I    +L+ M++           +++  KP I  + 
Sbjct: 73  AQMTADRAT--------------RIEEARRLAMMLKA----------LNDLPKPLIGRIQ 108

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 255
           G   G G+G+       I        + E  +GL P     Y+ A+   G +    + M+
Sbjct: 109 GQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR--MGEANARRVFMS 166

Query: 256 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP 296
            +      +A+  GL +  VP+  L +  EA +    S  P
Sbjct: 167 ARLFDA-EEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAP 206

Length = 262

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
             +A ITL+RP+A NA N  M  +  +     E+D  V+ +++ G+G   F AG D+  
Sbjct: 12  GRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK-HFSAGHDLGS 69

Length = 288

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 38/219 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GVA +T+    +LN +   + +     L    +DP V+ +++ G+G +AF  G DIK  
Sbjct: 15  RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIK-- 72

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICK-ISEYKKPYISL 193
                                   E++T +Q S   E F +    +C  +  +  P I+ 
Sbjct: 73  ------------------------EMATLDQASA--EAFISRLRDLCDAVRHFPVPVIAR 106

Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI-AAKGPG--GGSVGA 250
           + G  +G G+ ++     RI        MPE  +G+ P V    I AA  P   G +   
Sbjct: 107 IPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSV----IHAALLPRLIGWARTR 161

Query: 251 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 289
           +L +TG+ I     AL  GL    VP   L +  E L A
Sbjct: 162 WLLLTGETIDAAQ-ALAWGLVDRVVPLAELDAAVERLAA 199

Length = 256

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 49/218 (22%)

Query: 71  NVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           NV  + +AVIT+D P + +N +  +   + ++ L +   D  +K V+     P  F AG 
Sbjct: 10  NVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGA 69

Query: 130 DIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKP 189
           DI  ++A  +                + + ++ Q Q     ++F        +I     P
Sbjct: 70  DIN-MLAACK-------------TAQEAEALARQGQ-----QLFA-------EIEALPIP 103

Query: 190 YISLMDGVTMGFGIGISGHGRYRIVT--EKTLLAMPENGIGLFPDVGFSYIAAKGPGGG- 246
            ++ + G  +G G+ ++    YR+ T   KT+L +PE  +GL P          G GG  
Sbjct: 104 VVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLP----------GSGGTQ 153

Query: 247 ------SVGAYLGM--TGKRISTPSDALFAGLGTDYVP 276
                  V   L M  TGK++     AL  GL  D VP
Sbjct: 154 RLPRLIGVSTALDMILTGKQLR-AKQALKLGLVDDVVP 190

Length = 708

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 71  NVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
            V  +G+A++T+D P + +N +  +   +    L + + D  ++ +++    P  F AG 
Sbjct: 5   TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGA 64

Query: 130 DIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKP 189
           DI  ++A  Q               G+ K ++ Q Q             L  ++     P
Sbjct: 65  DIS-MLAACQT-------------AGEAKALAQQGQ------------VLFAELEALPIP 98

Query: 190 YISLMDGVTMGFGI--GISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 247
            ++ + G  +G G+   ++ H R     +KT+L +PE  +GL P  G +    + P    
Sbjct: 99  VVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGT---QRLPRLIG 155

Query: 248 VGAYLGM--TGKRISTPSDALFAGLGTDYVP 276
           V   L M  TGK++     AL  GL  D VP
Sbjct: 156 VSTALDMILTGKQLR-AKQALKLGLVDDVVP 185

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 28/155 (18%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA++TL+ P A N    D     K  + E  +D  V  ++I G G + F AG D+  + A
Sbjct: 13  VAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLN-LFA 70

Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
           +  K                           EM   F   +     +S ++   I+ ++G
Sbjct: 71  DGDKAVAR-----------------------EMARRFGEAFE---ALSAFRGVSIAAING 104

Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP 231
             MG G+  +     RI  E+  +A+PE  +GL P
Sbjct: 105 YAMGGGLECALACDIRIAEEQAQMALPEASVGLLP 139

Length = 258

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           VA ITL+RP+ LN +   M  + ++ +   E D  +K +++ G+G RAF  G D  G
Sbjct: 15  VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGG 70

Length = 298

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 25/160 (15%)

Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P G A + L R    NA N  M  +    LD+ +SD  ++ +L+ G G R F AG D+  
Sbjct: 13  PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAW 71

Query: 134 VVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISL 193
           +      D NT L         D +E++         E+    Y L       K P +++
Sbjct: 72  MQQSADLDYNTNL--------DDARELA---------ELMYNLYRL-------KIPTLAV 107

Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV 233
           + G   G  +G+       I  +     + E  IGL P V
Sbjct: 108 VQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAV 147

Length = 265

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 28/154 (18%)

Query: 71  NVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
                G+A +T+D P  +NA+           +    +DP  + V++   G R F AG+D
Sbjct: 6   TTPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVD 63

Query: 131 IKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPY 190
           IK    E+Q       +      C                  F A Y       E   P 
Sbjct: 64  IK----ELQATPGFTALIDANRGC---------------FAAFRAVY-------ECAVPV 97

Query: 191 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224
           I+ + G  +G GIG+ G+    + ++     +PE
Sbjct: 98  IAAVHGFCLGGGIGLVGNADVIVASDDATFGLPE 131

Length = 249

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 9/62 (14%)

Query: 75  NGVAVITLDRPKALNAMNL----DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
             +  ITLDRPKA NA++      M   + +F D    DP ++  +I G+G + F AG D
Sbjct: 11  GSILEITLDRPKA-NAIDAKTSFAMGEVFLNFRD----DPELRVAIITGAGEKFFSAGWD 65

Query: 131 IK 132
           +K
Sbjct: 66  LK 67

Length = 261

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 55/222 (24%), Positives = 79/222 (35%), Gaps = 68/222 (30%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GVA I L+RP   NA+N  +    ++         R   V++ G G   FCAG+D    
Sbjct: 10  GGVATIGLNRPAKRNALNDGLIAALRAAFARLPEGVR--AVVLHGEGDH-FCAGLD---- 62

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLIC--------KISEY 186
                                          LSE+ E    E             KI   
Sbjct: 63  -------------------------------LSELRERDAGEGMHHSRRWHRVFDKIQYG 91

Query: 187 KKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 246
           + P I+ + G  +G G+ ++     R+  E T  A+PE   G+F  VG         GGG
Sbjct: 92  RVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIF--VG---------GGG 140

Query: 247 SV------GAY----LGMTGKRISTPSDALFAGLGTDYVPSG 278
           SV      G      + +TG R+    +    GL    VP+G
Sbjct: 141 SVRVPRLIGVARMTDMMLTG-RVYDAQEGERLGLAQYLVPAG 181

Length = 255

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 76  GVAVITLDRPKALNAM--NLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            +  +T++RP+  NA+  N  +D    +      +D  V+ V++ G+G  AF +G ++K
Sbjct: 12  HIVTLTMNRPETRNALSDNDAVD-ALVAACAAINADRSVRAVILTGAGT-AFSSGGNVK 68

Length = 266

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 28/186 (15%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
              V+TL  P A NA++ DM       L+  E DP ++ V++ G+G   FCAG ++  ++
Sbjct: 12  STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLL 70

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
               K                    S Q   +  I+        I  I  + KP I+ ++
Sbjct: 71  ENRAKPP------------------SVQ---AASIDGLHD---WIRAIRAFPKPVIAAVE 106

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-PGGGSVGAYLGM 254
           G   G G  ++      +        M    +GL PD G S+  A+  P    +   L +
Sbjct: 107 GAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALP--RQLATELLL 164

Query: 255 TGKRIS 260
            GK IS
Sbjct: 165 EGKPIS 170

Length = 260

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 25/158 (15%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GVA +TLD P   NA++  +  +    L    +DP V+ V++  +G   FCAG D+    
Sbjct: 15  GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLS--- 70

Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
                        +     GD  + +      EM  +  A       I E  KP I+ +D
Sbjct: 71  -------------EAGGGGGDPYDAAVARAR-EMTALLRA-------IVELPKPVIAAID 109

Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV 233
           G     G G+ G     +   ++  A+ E  IG+ P +
Sbjct: 110 GHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAI 147

Length = 260

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 32/198 (16%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           HP GV VI  +RP+  NA+   M       L   ++D  ++  +  G+    F AG D++
Sbjct: 13  HP-GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQ 70

Query: 133 GVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYIS 192
             +A      +                       SE+++   A       ++E +KP +S
Sbjct: 71  DFLAAAMGGTS---------------------FGSEILDFLIA-------LAEAEKPIVS 102

Query: 193 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYL 252
            +DG+ +G G  I  H      + ++L   P   + L P+ G S +A +  G     A L
Sbjct: 103 GVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALL 162

Query: 253 GMTGKRISTPSDALFAGL 270
            + G+  S    A  AGL
Sbjct: 163 AL-GEGFSA-EAAQEAGL 178

Length = 251

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           V  I L RP+  NA+N ++  + +  + +   D   + +++ G G   FCAG D+ G V
Sbjct: 10  VLTIELQRPERRNALNAELCEELREAVRK-AVDESARAIVLTGQGT-VFCAGADLSGDV 66

Length = 243

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
              +  GA   V+ +  P G+AV+ L + + +N+M L M       L   E+DP V+ V 
Sbjct: 2   PAPSPPGATPGVRVDRRPGGIAVVWLAK-EPVNSMTLAMWRSLDDALTALENDPTVRGV- 59

Query: 117 IEGSGPR--AFCAGMDIK 132
           +  SG R   F AG DI 
Sbjct: 60  VFASGLRRDVFTAGNDIA 77

Length = 278

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD-- 130
             +G+A IT++RP+  NA       +    LD+   DP +  V++ G+G +AFC+G D  
Sbjct: 9   STDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQK 68

Query: 131 IKG 133
           ++G
Sbjct: 69  VRG 71

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 73  HPNGVAVITLDRPKALNAMN-LDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGM 129
             +G+A IT++RP+  NA     +D    +F D  + DP V  +L+ G+  G +AFC+G 
Sbjct: 25  SVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARD-DPNVGVILLTGNGDGDKAFCSGG 83

Query: 130 DIK 132
           D K
Sbjct: 84  DQK 86

Length = 282

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 75  NGVAVITLDRPKALNA----MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
           +G+A IT++RP+  NA       +M     +F D  + D  +  +++ G+G +AFC+G D
Sbjct: 21  DGIAKITINRPEVRNAFRPKTVKEM---IDAFADARD-DDNIGVIILTGAGDKAFCSGGD 76

Query: 131 IK 132
            K
Sbjct: 77  QK 78

Length = 273

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 38/166 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA ITL+RP+  N +  +   + +    E      VK V++ G+G   FC+G      
Sbjct: 25  DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSG------ 77

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEI---STQNQLSEMIEVFT-AEYSLICKISEYKKPY 190
                               GDV EI    T+  + E++  FT     L+  +    +P 
Sbjct: 78  --------------------GDVHEIIGPLTKMDMPELLA-FTRMTGDLVKAMRACPQPI 116

Query: 191 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 236
           I+ +DGV  G G  ++     R+ T     A       LF  VG +
Sbjct: 117 IAAVDGVCAGAGAILAMASDLRLGTPSAKTAF------LFTRVGLA 156

Length = 277

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 10/69 (14%)

Query: 74  PNGVAVITLDRPKALNAMNLD-MDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFC 126
             G   I  DRP+  NA     +D  Y++ LD     P V CVL+ G+GP       AFC
Sbjct: 32  DQGTVRIAFDRPEVRNAFRPHTVDELYRA-LDHARMSPDVGCVLLTGNGPSPKDGGWAFC 90

Query: 127 AGMD--IKG 133
           +G D  I+G
Sbjct: 91  SGGDQRIRG 99

Length = 302

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V  + L RP+A N +N  +  +    LD  E       V++EG  P  FC G D   + 
Sbjct: 13  DVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHA--ATIVVLEGL-PEVFCFGADFSAIA 69

Query: 136 AEIQKDR 142
            +    R
Sbjct: 70  EKPDAGR 76

Length = 255

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I LDRP   NA +  M       L E+E+D  ++  ++   G   F AG+D+  V  
Sbjct: 9   VLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEH-FTAGLDLADVAP 67

Query: 137 EIQK 140
           ++  
Sbjct: 68  KLAA 71

Length = 255

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
             G+A IT++RP+  NA       + +   ++   D  V  +++ G G +AFC+G D
Sbjct: 74  GEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGD 130

Length = 327

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PLN02921	327	naphthoate synthase	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	99.91
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.77
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.76
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.62
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.5
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.47
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.46
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.41
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.38
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.28
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.18
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.12
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.7
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.49
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.42
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.38
PRK10949	618	protease 4; Provisional	98.38
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.34
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.33
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.24
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.23
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.16
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.14
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.14
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.14
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.09
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.02
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.97
PRK11778	330	putative inner membrane peptidase; Provisional	97.95
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	97.94
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.85
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.82
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.78
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.62
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.55
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.47
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.45
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.31
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.3
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.24
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.12
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.07
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	96.98
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	96.93
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.81
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.71
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	96.61
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.1
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	96.1
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.1
PRK10949	618	protease 4; Provisional	95.77
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.69
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	95.42
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	92.72
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	91.39
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	90.68
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	86.53
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	85.26

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.4e-67  Score=540.80  Aligned_cols=354  Identities=34%  Similarity=0.602  Sum_probs=305.2

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      ..+.+.++. .+++++||||||+++||||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......  
T Consensus        40 ~~~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~~--  115 (407)
T PLN02851         40 LQDQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEG--  115 (407)
T ss_pred             CCCCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhcccc--
Confidence            345677777 689999999999999999999999999999999999999999999998 8999999999986522110  


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                           .......++..++.+.+.|.++|||+||+|||+|+|||++|+++|||||++++++|++|
T Consensus       116 ---------------------~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famP  174 (407)
T PLN02851        116 ---------------------NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHP  174 (407)
T ss_pred             ---------------------chHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecc
Confidence                                 00123446777888889999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|+|++|.  .+++|+|||++|+ |+||+++||++++||++++..+.+.+....  ..+...+...
T Consensus       175 E~~iGl~PdvG~s~~L~rl~g~--~g~~L~LTG~~i~-a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~--~~~~~~~~~~  249 (407)
T PLN02851        175 EVQMGFHPDAGASYYLSRLPGY--LGEYLALTGQKLN-GVEMIACGLATHYCLNARLPLIEERLGKLL--TDDPAVIEDS  249 (407)
T ss_pred             hhccCCCCCccHHHHHHHhcCH--HHHHHHHhCCcCC-HHHHHHCCCceeecCHhhHHHHHHHHHhhc--cCCHHHHHHH
Confidence            9999999999999999999994  6999999999999 999999999999999999866555554432  2345568889


Q ss_pred             HHhhcCCC-CCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          304 LAKYSSDP-EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       304 l~~~~~~~-~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                      |++|...+ +....+....+.|++||+.+ |+++|+++|+.+.+..   ..+||+++++.|.++||+|+++|+++++++.
T Consensus       250 l~~~~~~~~~~~~~~~~~~~~I~~~F~~~-sv~~I~~~L~~~~~~~---~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~  325 (407)
T PLN02851        250 LAQYGDLVYPDKSSVLHKIETIDKCFGHD-TVEEIIEALENEAASS---YDEWCKKALKKIKEASPLSLKVTLQSIREGR  325 (407)
T ss_pred             HHHhccccCCCcccHHHHHHHHHHHhCCC-CHHHHHHHHHhccccc---chHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            99997542 22345556688999999988 9999999999753210   1489999999999999999999999999987


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhc---CCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCCCCCc
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSS---LRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEEL  459 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~---~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~~~~~  459 (461)
                               ..++.+|+++|+++..+++   .++||.|||+|.|+||+++|+|+|++++||+++.|+++|+|++.+.-+|
T Consensus       326 ---------~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l  396 (407)
T PLN02851        326 ---------FQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESEL  396 (407)
T ss_pred             ---------cCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccc
Confidence                     5699999999999999987   5899999999999999999999999999999999999999985421145


Q ss_pred             C
Q 012534          460 K  460 (461)
Q Consensus       460 ~  460 (461)
                      +
T Consensus       397 ~  397 (407)
T PLN02851        397 E  397 (407)
T ss_pred             c
Confidence            4

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=1.4e-67  Score=539.35  Aligned_cols=347  Identities=36%  Similarity=0.635  Sum_probs=299.9

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      ..|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++........   
T Consensus         9 ~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~~~---   83 (381)
T PLN02988          9 SQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQGN---   83 (381)
T ss_pred             CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcccc---
Confidence            3467776 789999999999999999999999999999999999999999999998 89999999999863211100   


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                          ......++...+.+...|.++|||+||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        84 --------------------~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~  143 (381)
T PLN02988         84 --------------------WRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPET  143 (381)
T ss_pred             --------------------hhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhh
Confidence                                001223555566677789999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|+|++|.  .+++|+|||++++ |.||+++|||+++||++++...+.+++..  ...+...+...++
T Consensus       144 ~iGl~Pd~G~s~~L~rl~G~--~~~~l~LTG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~la~~--~~~~p~~~~~~~~  218 (381)
T PLN02988        144 ALGLFPDVGASYFLSRLPGF--FGEYVGLTGARLD-GAEMLACGLATHFVPSTRLTALEADLCRI--GSNDPTFASTILD  218 (381)
T ss_pred             hcCcCCCccHHHHHHHHHHH--HHHHHHHcCCCCC-HHHHHHcCCceEecCHhHHHHHHHHHHHh--hccCHHHHHHHHH
Confidence            99999999999999999993  7999999999999 99999999999999999999988888743  2234444677777


Q ss_pred             hhcCCCC-CCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          306 KYSSDPE-GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       306 ~~~~~~~-~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                      .|...+. ....+....+.|++||+.+ |+++|+++|+.+.+..   ..+|++++++.|.++||+|+++|+++++++.  
T Consensus       219 ~~~~~~~~~~~~~~~~~~~I~~~f~~~-~~~~i~~~L~~~~~~~---~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~--  292 (381)
T PLN02988        219 AYTQHPRLKPQSAYHRLDVIDRCFSRR-TVEEIISALEREATQE---ADGWISATIQALKKASPASLKISLRSIREGR--  292 (381)
T ss_pred             HhhcCCCCCCchHHHHHHHHHHHhCCC-CHHHHHHHHHhhcccc---ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--
Confidence            7765542 1234445688999999988 9999999999852100   1489999999999999999999999999987  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcC---CCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSL---RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTG  455 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~---s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~  455 (461)
                             ..++.+|+++|+++..+++.   ++||.|||||.|+||+++|+|+|++++||+++.|+++|+|.+.+
T Consensus       293 -------~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~  359 (381)
T PLN02988        293 -------LQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEEE  359 (381)
T ss_pred             -------cCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCcc
Confidence                   56999999999999999988   69999999999999999999999999999999999999998654

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=4e-68  Score=516.99  Aligned_cols=357  Identities=49%  Similarity=0.790  Sum_probs=326.3

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      ..+.|.++. ++....||||||+++||||.+|...+...|..|+.++.+++||+.|+|+++||||+|++.......++. 
T Consensus        36 ~~~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~-  113 (401)
T KOG1684|consen   36 SKDQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKE-  113 (401)
T ss_pred             cCCceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCC-
Confidence            345677877 789999999999999999999999999999999999999999999998899999999996655433221 


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                            ......+|..+|.+++.|.++.||+||.+||..||||++|+++.-||||||++.|+||
T Consensus       114 ----------------------~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmP  171 (401)
T KOG1684|consen  114 ----------------------TPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMP  171 (401)
T ss_pred             ----------------------chHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceeccc
Confidence                                  1245679999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+.||++||+|++|+|+|++|  ..+.||.|||.+++ +.||+..||++|+|+++++..+.++|. ...+.+|...+.+.
T Consensus       172 Et~IGlfPDVG~Sy~lsrlpg--~lg~YLgLTG~rl~-GaD~~~~GlATHyv~S~~l~~Lee~L~-~~l~~dp~~~I~~~  247 (401)
T KOG1684|consen  172 ETGIGLFPDVGASYFLSRLPG--YLGLYLGLTGQRLS-GADALRCGLATHYVPSEKLPSLEERLL-KNLNDDPQSVINET  247 (401)
T ss_pred             ccccccccCccceeehhhCcc--HHHHhhhhccceec-chHHHHhcchhhccchhhhhHHHHHHh-hhcCCCcHHHHHHH
Confidence            999999999999999999999  48999999999999 899999999999999999999999998 56788999999999


Q ss_pred             HHhhcCCCCCCch-hhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          304 LAKYSSDPEGEAP-LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       304 l~~~~~~~~~~~~-~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                      |.+|...+.++.. +....++|++||+.+ ||+|||+.|++.++  ..++.+||+++++.|.+.||+|+++|.++++.+.
T Consensus       248 l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~-tVeeIie~lk~~q~--~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs  324 (401)
T KOG1684|consen  248 LEKYASPAKDESFSLSLKLDVINKCFSAN-TVEEIIEALKNYQQ--SADGSEWAKETLKTLKKMSPTSLKVTLRQIREGS  324 (401)
T ss_pred             HHHhcccCCCccccchhhHHHHHHhhccc-cHHHHHHHHHHHhh--hhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhh
Confidence            9999998755544 455788999999999 99999999988876  3345799999999999999999999999999887


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCCCCCcCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV  461 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~~~~~~~  461 (461)
                               ..++.+|+.+|+++..+.+.++||.||++|.|+||+++|+|+|.+++||++++|+.+|.|.+. +++|++
T Consensus       325 ---------~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~-~~eLkl  393 (401)
T KOG1684|consen  325 ---------KQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPS-KSELKL  393 (401)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCcCCCCCCcchhhcCHHHHHHhccCCCC-cccccC
Confidence                     679999999999999999999999999999999999999999999999999999999999554 577775

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.6e-66  Score=533.30  Aligned_cols=354  Identities=32%  Similarity=0.574  Sum_probs=296.8

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      .+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........  
T Consensus        36 ~~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~~--  111 (401)
T PLN02157         36 DYQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGS--  111 (401)
T ss_pred             CCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccccc--
Confidence            34467776 789999999999999999999999999999999999999999999998 89999999999864221100  


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                           ......++...+.++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||
T Consensus       112 ---------------------~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE  170 (401)
T PLN02157        112 ---------------------PDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPE  170 (401)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChh
Confidence                                 00122355666777888999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++| . .+++|+|||+.|+ |+||+++||||++||++++... .+++..... .+...+....
T Consensus       171 ~~iGl~Pd~G~s~~L~rl~G-~-~a~~L~LTG~~i~-A~eA~~~GLv~~vVp~~~l~~~-~~~~~~i~~-~~p~av~~~k  245 (401)
T PLN02157        171 TIIGFHPDAGASFNLSHLPG-R-LGEYLGLTGLKLS-GAEMLACGLATHYIRSEEIPVM-EEQLKKLLT-DDPSVVESCL  245 (401)
T ss_pred             hhcCCCCCccHHHHHHHhhh-H-HHHHHHHcCCcCC-HHHHHHcCCceEEeCHhHHHHH-HHHHHHHHc-CCHHHHHHHH
Confidence            99999999999999999999 3 8999999999999 9999999999999999998544 455444332 2333444444


Q ss_pred             HhhcCCC-CCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          305 AKYSSDP-EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       305 ~~~~~~~-~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                      +.+.... .....+......|.+||+.+ +++||+++|+.+.+..   -.+|++++++.|.++||+|+++|.++++++. 
T Consensus       246 ~~~~~~~~~~~~~l~~~~~~i~~~f~~~-d~~ei~~al~~~~~kr---~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~-  320 (401)
T PLN02157        246 EKCAEVAHPEKTGVIRRIDLLEKCFSHD-TVEEIIDSLEIEAGRR---KDTWCITTLRRLKESSPLSLKVALRSIREGR-  320 (401)
T ss_pred             HHHhcccCCcchhHHHHHHHHHHHhcCC-CHHHHHHHHHhhhccc---chHHHHHHHHHHHhcCcHHHHHHHHHHHHhh-
Confidence            4443321 22344555678999999987 9999999997642211   1489999999999999999999999999987 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcC---CCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCCCCCcC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSL---RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELK  460 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~---s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~~~~~~  460 (461)
                              ..++.+|+++|+++..+++.   ++||.|||+|.|+||+++|+|+|++++||+++.|++||+|+.++.++|+
T Consensus       321 --------~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~  392 (401)
T PLN02157        321 --------LQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLD  392 (401)
T ss_pred             --------cCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCccccc
Confidence                    56999999999999999885   6999999999999999999999999999999999999999864445565


Q ss_pred             C
Q 012534          461 V  461 (461)
Q Consensus       461 ~  461 (461)
                      +
T Consensus       393 ~  393 (401)
T PLN02157        393 L  393 (401)
T ss_pred             c
Confidence            3

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=5.1e-64  Score=514.76  Aligned_cols=352  Identities=35%  Similarity=0.633  Sum_probs=300.4

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      ++++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++....... 
T Consensus         8 ~~~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~-   84 (379)
T PLN02874          8 PAEEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRESD-   84 (379)
T ss_pred             CCCCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcccc-
Confidence            3456688876 789999999999999999999999999999999999999999999998 8999999999875321000 


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                              .....++...+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        85 ------------------------~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~  140 (379)
T PLN02874         85 ------------------------DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFAT  140 (379)
T ss_pred             ------------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEec
Confidence                                    00112333445567789999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++| . .+++|+|||+.|+ |+||+++|||+++||++++.+.+.++.+.  ...+...+++
T Consensus       141 pe~~iGl~p~~g~~~~L~rl~g-~-~a~~l~ltG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~l~~l--~~~~~~~~~~  215 (379)
T PLN02874        141 PEASVGFHTDCGFSYILSRLPG-H-LGEYLALTGARLN-GKEMVACGLATHFVPSEKLPELEKRLLNL--NSGDESAVQE  215 (379)
T ss_pred             cccccCcCCChhHHHHHHhhhH-H-HHHHHHHcCCccc-HHHHHHcCCccEEeCHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence            9999999999999999999988 4 8999999999999 99999999999999999888755566443  3345677899


Q ss_pred             HHHhhcCCC-CCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          303 LLAKYSSDP-EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       303 ~l~~~~~~~-~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                      +|++|.... .....+....+.|.+||+.+ ++.+|+++|++..+...   .+||.+++++|+++||+|++.+|++++.+
T Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~~~eii~al~~~~~~~~---~~~A~~~a~~l~~~sP~al~~tk~~~~~~  291 (379)
T PLN02874        216 AIEEFSKDVQADEDSILNKQSWINECFSKD-TVEEIIKAFESEASKTG---NEWIKETLKGLRRSSPTGLKITLRSIREG  291 (379)
T ss_pred             HHHHhhcccCCCcchhHHHHHHHHHHhCCC-CHHHHHHHHhhcccccc---cHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            999988653 23345555688999999987 99999999997543222   48999999999999999999999999987


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcC---CCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSL---RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEE  458 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~---s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~~~~  458 (461)
                      .         ..++.++++.|++....++.   ++||+||++||++||+|+|+|+++++++|++++|+++|.|...+ .|
T Consensus       292 ~---------~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~w~~~~~~~v~~~~v~~~f~~~~~~-~~  361 (379)
T PLN02874        292 R---------KQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKAR-EE  361 (379)
T ss_pred             c---------cCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCCCCCCChhhCCHHHHHHHhCCCCCc-cc
Confidence            6         56899999999999888777   99999999999878889999999999999999999999996432 34


Q ss_pred             cC
Q 012534          459 LK  460 (461)
Q Consensus       459 ~~  460 (461)
                      |+
T Consensus       362 ~~  363 (379)
T PLN02874        362 LQ  363 (379)
T ss_pred             cC
Confidence            54

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=6.2e-64  Score=508.25  Aligned_cols=339  Identities=43%  Similarity=0.729  Sum_probs=297.9

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.........   
T Consensus         4 ~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~---   79 (342)
T PRK05617          4 EVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDP---   79 (342)
T ss_pred             eEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCc---
Confidence            467776 7899999999999999999999999999999999999999999999987899999999987542111000   


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                          .....++...+.++..+..+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        80 --------------------~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~  139 (342)
T PRK05617         80 --------------------LAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETG  139 (342)
T ss_pred             --------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccc
Confidence                                000123344456778899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++| . .+++|+|||+.++ |+||+++|||+++||++++....+++++..+ .+..+.++.+|.+
T Consensus       140 lGl~P~~g~~~~L~r~~g-~-~a~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~  215 (342)
T PRK05617        140 IGFFPDVGGTYFLSRAPG-A-LGTYLALTGARIS-AADALYAGLADHFVPSADLPALLDALISLRW-DSGADVVDAALAA  215 (342)
T ss_pred             cCcCCCccceeEehhccc-H-HHHHHHHcCCCCC-HHHHHHcCCcceecCHHHHHHHHHHHHhcCC-ccchhHHHHHHHH
Confidence            999999999999999977 5 8999999999999 9999999999999999988876667765544 3334567889999


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                      |...++. ..+......|++||+.. ++++|+++|+++.       ++||.+++++|+++||.|++.+|+++++..    
T Consensus       216 ~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~~~~~l~~~~-------~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~----  282 (342)
T PRK05617        216 FATPAPA-SELAAQRAWIDECFAGD-TVEDIIAALEADG-------GEFAAKTADTLRSRSPTSLKVTLEQLRRAR----  282 (342)
T ss_pred             hccCCCc-chhHHHHHHHHHHhCCC-CHHHHHHHHHhcc-------HHHHHHHHHHHHhCCcHHHHHHHHHHHHhc----
Confidence            8887554 47778889999999997 9999999999995       489999999999999999999999999876    


Q ss_pred             CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccC
Q 012534          387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEP  451 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p  451 (461)
                           ..++.++++.|...+..++.++|++||+++|+++|+|.|+|++++++||++++|+++|+|
T Consensus       283 -----~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~~~~~~~~~~~~~~~~~~~~  342 (342)
T PRK05617        283 -----GLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWSPATLEDVTPEDVEAFFAP  342 (342)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence                 568999999999999999999999999999975665899999999999999999999998

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=4.8e-55  Score=414.28  Aligned_cols=252  Identities=26%  Similarity=0.398  Sum_probs=223.5

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      +.....+++|+.|+||||+++|||+..|+.+|.++|..+++|+.+.++||||.| ++||+|+||+++......+....  
T Consensus        38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~--  114 (290)
T KOG1680|consen   38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDG--  114 (290)
T ss_pred             eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhccccccccc--
Confidence            333334789999999999999999999999999999999999999999999998 99999999999986433221110  


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                              .+.   ..+..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++
T Consensus       115 ------------------------~~~---~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~  167 (290)
T KOG1680|consen  115 ------------------------IFL---RVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRM  167 (290)
T ss_pred             ------------------------ccc---chhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeeccccccc
Confidence                                    111   22333458999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|.+|||++|+|++|.+ +|+++++||++++ |+||+++||||+|||.+++..  ++.                    
T Consensus       168 Gi~p~~GGT~rl~r~vG~s-~Ale~~ltg~~~~-AqeA~~~GlVn~Vvp~~~~l~--eAv--------------------  223 (290)
T KOG1680|consen  168 GIIPSWGGTQRLPRIVGKS-RALEMILTGRRLG-AQEAKKIGLVNKVVPSGDALG--EAV--------------------  223 (290)
T ss_pred             CCccCCCchhhHHHHhChH-HHHHHHHhcCccc-HHHHHhCCceeEeecchhHHH--HHH--------------------
Confidence            9999999999999999997 9999999999999 999999999999999988664  222                    


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                    +|++    +|+++||.+++..|+.++.+.     
T Consensus       224 ----------------------------------------------~l~~----~Ia~~~~~~v~~~K~svn~~~-----  248 (290)
T KOG1680|consen  224 ----------------------------------------------KLAE----QIAKNSPLVVRADKESVNAAY-----  248 (290)
T ss_pred             ----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh-----
Confidence                                                          6666    899999999999999999976     


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                          ..++.+.+..|...+...+..+|-.|||.+|. +| |+|+|+.
T Consensus       249 ----e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~-~k-r~~~~~k  289 (290)
T KOG1680|consen  249 ----ETTLFEGLELERDLFGSTFATEDRLEGMTAFA-EK-RKPKFSK  289 (290)
T ss_pred             ----hccHHHHHHhhhhhhhhhhhhHHHHHHHHHhc-cc-CCccccc
Confidence                67999999999999999999999999999998 67 8999984

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-53  Score=415.32  Aligned_cols=255  Identities=24%  Similarity=0.289  Sum_probs=224.6

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......    
T Consensus         3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~----   76 (257)
T PRK05862          3 YETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADLSFM----   76 (257)
T ss_pred             CceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhccchh----
Confidence            45577776 689999999999999999999999999999999999999999999997 899999999987531000    


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                               ..+......++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus        77 -------------------------~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe  131 (257)
T PRK05862         77 -------------------------DVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPE  131 (257)
T ss_pred             -------------------------HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCch
Confidence                                     0012223346678999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+.                   
T Consensus       132 ~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------  190 (257)
T PRK05862        132 IKLGVLPGMGGSQRLTRAVGKA-KAMDLCLTGRMMD-AAEAERAGLVSRVVPADKLLDEAL-------------------  190 (257)
T ss_pred             hccCcCCCccHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCCCEeeCHhHHHHHHH-------------------
Confidence            9999999999999999999997 9999999999999 999999999999999877664222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       +|++    +|++.+|.+++.+|++++...  
T Consensus       191 -------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~--  215 (257)
T PRK05862        191 -------------------------------------------------AAAT----TIASFSLPAVMMAKEAVNRAY--  215 (257)
T ss_pred             -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh--
Confidence                                                             4444    788999999999999999875  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                             ..++.+++..|.+.+..++.++|++||+++|+ +| |+|.|+++
T Consensus       216 -------~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~-~k-r~p~~~~~  257 (257)
T PRK05862        216 -------ETTLAEGLLFERRLFHSLFATEDQKEGMAAFV-EK-RKPVFKHR  257 (257)
T ss_pred             -------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cc-CCCCCCCC
Confidence                   46899999999999999999999999999999 77 89999863

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=5.7e-53  Score=413.79  Aligned_cols=258  Identities=26%  Similarity=0.335  Sum_probs=227.3

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++......   
T Consensus         2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~---   77 (260)
T PRK05809          2 ELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEE---   77 (260)
T ss_pred             CcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChH---
Confidence            456788876 7899999999999999999999999999999999999999999999986899999999987531100   


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                              ....+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        78 ------------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~p  133 (260)
T PRK05809         78 ------------------------EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQP  133 (260)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCc
Confidence                                    01112233345777899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+                   
T Consensus       134 e~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a-------------------  192 (260)
T PRK05809        134 EVGLGITPGFGGTQRLARIVGPG-KAKELIYTGDMIN-AEEALRIGLVNKVVEPEKLMEEA-------------------  192 (260)
T ss_pred             ccccCCCCCccHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHcCCCCcccChHHHHHHH-------------------
Confidence            99999999999999999999997 9999999999999 99999999999999987765321                   


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                       .++++    +|+++||.+++.+|++++... 
T Consensus       193 -------------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~-  218 (260)
T PRK05809        193 -------------------------------------------------KALAN----KIAANAPIAVKLCKDAINRGM-  218 (260)
T ss_pred             -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh-
Confidence                                                             14444    799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                              ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus       219 --------~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~-~~-r~p~~~~  259 (260)
T PRK05809        219 --------QVDIDTAVAIEAEDFGECFSTEDQTEGMTAFV-EK-REKNFKN  259 (260)
T ss_pred             --------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCC
Confidence                    56899999999999999999999999999999 67 8999975

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.9e-53  Score=413.67  Aligned_cols=257  Identities=25%  Similarity=0.362  Sum_probs=224.8

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++........    
T Consensus         4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~----   78 (260)
T PRK05980          4 TVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA----   78 (260)
T ss_pred             eEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc----
Confidence            477776 789999999999999999999999999999999999999999999998679999999998754211000    


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                         ......++.....++..|..+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        79 -------------------~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~  139 (260)
T PRK05980         79 -------------------DVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIR  139 (260)
T ss_pred             -------------------hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccc
Confidence                               0011224444456777899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                     
T Consensus       140 ~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------  196 (260)
T PRK05980        140 LGMPPTFGGTQRLPRLAGRK-RALELLLTGDAFS-AERALEIGLVNAVVPHEELLPAAR---------------------  196 (260)
T ss_pred             cCCCCCchHhhHHHhhcCHH-HHHHHHHcCCccC-HHHHHHcCCCCcccCHHHHHHHHH---------------------
Confidence            99999999999999999997 9999999999999 999999999999999877654222                     


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                     ++|+    +|++.+|.+++.+|++++...    
T Consensus       197 -----------------------------------------------~~a~----~la~~~p~a~~~~K~~~~~~~----  221 (260)
T PRK05980        197 -----------------------------------------------ALAR----RIIRHSPVAVAAILTAVTRGL----  221 (260)
T ss_pred             -----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh----
Confidence                                                           4444    789999999999999999875    


Q ss_pred             CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534          387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW  432 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w  432 (461)
                           ..++.+++..|...+...+.++|++||+++|+ +| |+|+|
T Consensus       222 -----~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k-r~p~~  260 (260)
T PRK05980        222 -----NLSIAEGLLIESEQFARMAGSADLREGLAAWI-ER-RRPAY  260 (260)
T ss_pred             -----cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cc-CCCCC
Confidence                 46799999999999999999999999999999 67 79988

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=5.3e-53  Score=411.84  Aligned_cols=250  Identities=23%  Similarity=0.368  Sum_probs=222.1

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCC
Q 012534           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLK  153 (461)
Q Consensus        74 ~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (461)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.....              
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~--------------   67 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP--------------   67 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh--------------
Confidence            578999999999999999999999999999999999999999999986589999999998753100              


Q ss_pred             CCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCc
Q 012534          154 CGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV  233 (461)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~  233 (461)
                                   .....+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++
T Consensus        68 -------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~  134 (251)
T PLN02600         68 -------------SEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGA  134 (251)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCc
Confidence                         0111234445567788999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCC
Q 012534          234 GFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG  313 (461)
Q Consensus       234 G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~  313 (461)
                      |++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                            
T Consensus       135 g~~~~l~~~~G~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~~~~a~----------------------------  184 (251)
T PLN02600        135 GGTQRLPRLVGRS-RAKELIFTGRRIG-AREAASMGLVNYCVPAGEAYEKAL----------------------------  184 (251)
T ss_pred             hHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCCcEeeChhHHHHHHH----------------------------
Confidence            9999999999998 9999999999999 999999999999999887654221                            


Q ss_pred             CchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccC
Q 012534          314 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS  393 (461)
Q Consensus       314 ~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~  393 (461)
                                                              ++|+    +|+++||.+++.+|++++...         ..
T Consensus       185 ----------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~---------~~  211 (251)
T PLN02600        185 ----------------------------------------ELAQ----EINQKGPLAIKMAKKAINEGS---------EV  211 (251)
T ss_pred             ----------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHc---------cC
Confidence                                                    4444    799999999999999999765         56


Q ss_pred             CHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          394 KLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       394 ~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      ++.+.++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       212 ~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-ek-r~p~~~~~  251 (251)
T PLN02600        212 DMASGLEIEEECYEQVLKTKDRLEGLAAFA-EK-RKPVYTGK  251 (251)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-cC-CCCCCCCC
Confidence            899999999999999999999999999999 77 89999753

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-52  Score=411.55  Aligned_cols=254  Identities=23%  Similarity=0.304  Sum_probs=223.3

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .+.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++......      
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~------   75 (258)
T PRK09076          4 ELDLEI-DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKA------   75 (258)
T ss_pred             EEEEEE-ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChh------
Confidence            467776 78999999999986 9999999999999999999999999999999986799999999987431000      


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                           ....+...+..++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||++
T Consensus        76 ---------------------~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~  134 (258)
T PRK09076         76 ---------------------VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEAS  134 (258)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccc
Confidence                                 01112333446777899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                     
T Consensus       135 ~Gl~p~~g~~~~l~~~iG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------  191 (258)
T PRK09076        135 VGLLPCAGGTQNLPWLVGEG-WAKRMILCGERVD-AATALRIGLVEEVVEKGEAREAAL---------------------  191 (258)
T ss_pred             cCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHCCCCceecCchhHHHHHH---------------------
Confidence            99999999999999999997 9999999999999 999999999999999887654221                     


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                     ++|+    +|+++||.+++.+|++++...    
T Consensus       192 -----------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~----  216 (258)
T PRK09076        192 -----------------------------------------------ALAQ----KVANQSPSAVAACKTLIQAAR----  216 (258)
T ss_pred             -----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh----
Confidence                                                           3444    799999999999999999765    


Q ss_pred             CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                           ..++.+.++.|...+..++.++|++||+++|+ +| |+|+|++
T Consensus       217 -----~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~-~k-r~p~~~~  257 (258)
T PRK09076        217 -----NGPRAAALALERELFVDLFDTEDQREGVNAFL-EK-RAPQWKN  257 (258)
T ss_pred             -----cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence                 45799999999999999999999999999999 67 8999974

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7e-53  Score=412.87  Aligned_cols=255  Identities=24%  Similarity=0.396  Sum_probs=219.9

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.......  
T Consensus         2 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~--   78 (259)
T PRK06494          2 ALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG--   78 (259)
T ss_pred             CCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch--
Confidence            356688876 78999999999999999999999999999999999999999999999867999999999875311000  


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                              .   ....+.. +..+.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        79 ------------------------~---~~~~~~~-~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~p  130 (259)
T PRK06494         79 ------------------------W---PESGFGG-LTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALP  130 (259)
T ss_pred             ------------------------h---hhHHHHH-HHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCc
Confidence                                    0   0001111 23345899999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                   
T Consensus       131 e~~~Gl~p~~g~~~~l~~~vg~~-~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a-------------------  189 (259)
T PRK06494        131 EPRVGLAALAGGLHRLPRQIGLK-RAMGMILTGRRVT-AREGLELGFVNEVVPAGELLAAA-------------------  189 (259)
T ss_pred             ccccCCCCCchHHHHHHHHcCHH-HHHHHHHcCCcCC-HHHHHHcCCCcEecCHhHHHHHH-------------------
Confidence            99999999999999999999998 9999999999999 99999999999999987765422                   


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                       .+||+    +|+++||.+++.+|++++... 
T Consensus       190 -------------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~-  215 (259)
T PRK06494        190 -------------------------------------------------ERWAD----DILACSPLSIRASKQAVYRGL-  215 (259)
T ss_pred             -------------------------------------------------HHHHH----HHHhcCHHHHHHHHHHHHHhc-
Confidence                                                             24454    799999999999999999865 


Q ss_pred             hcCCCccccCCHHHHHHHH--HHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYE--YRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E--~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                              ..++.+.++.|  ...+..++.++|++||+++|+ +| |+|+|++
T Consensus       216 --------~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~  258 (259)
T PRK06494        216 --------EVSLEEAITAQRDYPAVEARRASQDYIEGPKAFA-EK-RPPRWKG  258 (259)
T ss_pred             --------cCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH-cc-CCCCCCC
Confidence                    56799999999  557788899999999999999 67 8999975

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.8e-53  Score=414.68  Aligned_cols=261  Identities=22%  Similarity=0.291  Sum_probs=228.7

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      +.+.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.......  
T Consensus         9 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~--   85 (269)
T PRK06127          9 PTGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDA--   85 (269)
T ss_pred             CCCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccch--
Confidence            456688887 78999999999999999999999999999999999999999999999867999999999875311000  


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                             .....+......++..|..+||||||+|||+|+|||++|+++||+||++++++|++|
T Consensus        86 -----------------------~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~p  142 (269)
T PRK06127         86 -----------------------EAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIP  142 (269)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCc
Confidence                                   011123344456778899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                   
T Consensus       143 e~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a-------------------  201 (269)
T PRK06127        143 AARLGLGYGYDGVKNLVDLVGPS-AAKDLFYTARRFD-AAEALRIGLVHRVTAADDLETAL-------------------  201 (269)
T ss_pred             hhhhCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCCCEeeCHHHHHHHH-------------------
Confidence            99999999999999999999998 9999999999999 99999999999999987776422                   


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                       .+||+    ++++.||.+++.+|++++... 
T Consensus       202 -------------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~-  227 (269)
T PRK06127        202 -------------------------------------------------ADYAA----TIAGNAPLTLRAAKRAIAELL-  227 (269)
T ss_pred             -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhc-
Confidence                                                             24554    788999999999999999865 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                              ..++.+.++.|...+..++.++|++||+.+|+ +| |+|+|+++
T Consensus       228 --------~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~-ek-r~p~~~~~  269 (269)
T PRK06127        228 --------KDEPERDMAACQALVAACFDSEDYREGRAAFM-EK-RKPVFKGR  269 (269)
T ss_pred             --------cCCHHHHHHHHHHHHHHHhcChHHHHHHHHHh-cC-CCCCCCCC
Confidence                    46799999999999999999999999999999 67 89999763

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=7.9e-53  Score=411.62  Aligned_cols=252  Identities=21%  Similarity=0.316  Sum_probs=222.5

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....   ..   
T Consensus         3 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~---   74 (255)
T PRK09674          3 ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEKD---LA---   74 (255)
T ss_pred             eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhccc---hh---
Confidence            466776 789999999999999999999999999999999999999999999998 8999999999875310   00   


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                             ..+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||++
T Consensus        75 -----------------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~  131 (255)
T PRK09674         75 -----------------------ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEIT  131 (255)
T ss_pred             -----------------------hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhh
Confidence                                   001122234667889999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. ++++|+++|+.++ |+||+++||||++||++++.+.+                      
T Consensus       132 ~Gl~p~~g~~~~l~~~ig~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a----------------------  187 (255)
T PRK09674        132 LGIMPGAGGTQRLIRSVGKS-LASQMVLTGESIT-AQQAQQAGLVSEVFPPELTLERA----------------------  187 (255)
T ss_pred             cCCCCCccHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHH----------------------
Confidence            99999999999999999997 9999999999999 99999999999999987765321                      


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                    .+||+    +|+++||.+++.+|++++...    
T Consensus       188 ----------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~----  213 (255)
T PRK09674        188 ----------------------------------------------LQLAS----KIARHSPLALRAAKQALRQSQ----  213 (255)
T ss_pred             ----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh----
Confidence                                                          14444    799999999999999999875    


Q ss_pred             CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                           ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus       214 -----~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~-~k-r~p~~~~  254 (255)
T PRK09674        214 -----EVDLQAGLAQERQLFTLLAATEDRHEGISAFL-EK-RTPDFKG  254 (255)
T ss_pred             -----cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCCC
Confidence                 56899999999999999999999999999999 67 8999975

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-52  Score=411.33  Aligned_cols=258  Identities=23%  Similarity=0.342  Sum_probs=227.0

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.+.+++.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... .     
T Consensus         3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~-~-----   76 (260)
T PRK07657          3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMN-E-----   76 (260)
T ss_pred             ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCC-h-----
Confidence            3577775468999999999999999999999999999999999999999999999856999999999874310 0     


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                           .....++.....++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        77 ---------------------~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~  135 (260)
T PRK07657         77 ---------------------EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTET  135 (260)
T ss_pred             ---------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchh
Confidence                                 01112344455677889999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                    
T Consensus       136 ~~G~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------  193 (260)
T PRK07657        136 TLAIIPGAGGTQRLPRLIGVG-RAKELIYTGRRIS-AQEAKEIGLVEFVVPAHLLEEKAI--------------------  193 (260)
T ss_pred             ccCcCCCccHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHcCCCCeecCHHHHHHHHH--------------------
Confidence            999999999999999999998 9999999999999 999999999999999877754222                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      +|++    +|+.++|.+++.+|++++...   
T Consensus       194 ------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---  218 (260)
T PRK07657        194 ------------------------------------------------EIAE----KIASNGPIAVRQAKEAISNGI---  218 (260)
T ss_pred             ------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc---
Confidence                                                            4444    799999999999999999865   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                            ..++.+.++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       219 ------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~~-r~~~~~~~  260 (260)
T PRK07657        219 ------QVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFK-EK-RKPMYKGE  260 (260)
T ss_pred             ------cCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHh-cC-CCCCCCCC
Confidence                  46799999999999999999999999999999 67 89999753

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-52  Score=410.33  Aligned_cols=254  Identities=23%  Similarity=0.308  Sum_probs=222.4

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++  +++|+|||||.| ++||+|+|++++......     
T Consensus         2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~-----   72 (255)
T PRK08150          2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERDAG-----   72 (255)
T ss_pred             ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhccch-----
Confidence            3577776 7899999999999999999999999999999998  789999999998 799999999987531100     


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                            .........+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        73 ----------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~  130 (255)
T PRK08150         73 ----------------------EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEG  130 (255)
T ss_pred             ----------------------hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEecccc
Confidence                                  0011233345677789999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                    
T Consensus       131 ~~Gl~p~~g~~~~l~~~iG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------  188 (255)
T PRK08150        131 QRGIFVGGGGSVRVPRLIGVA-RMTDMMLTGRVYD-AQEGERLGLAQYLVPAGEALDKAM--------------------  188 (255)
T ss_pred             ccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHcCCccEeeCchHHHHHHH--------------------
Confidence            999999999999999999997 9999999999999 999999999999999888764222                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      +||+    +|+++||.+++.+|++++...   
T Consensus       189 ------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---  213 (255)
T PRK08150        189 ------------------------------------------------ELAR----RIAQNAPLTNFAVLNALPRIA---  213 (255)
T ss_pred             ------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc---
Confidence                                                            4444    799999999999999999765   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                            ..++.+.++.|...+...+.++|++||+++|+ +| |+|+|++.
T Consensus       214 ------~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~-~k-r~p~~~~~  255 (255)
T PRK08150        214 ------DMSADDGLFVESLMAAVAQSAPEAKERLRAFL-EK-KAAKVKPP  255 (255)
T ss_pred             ------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCCCC
Confidence                  46799999999998888999999999999999 67 89999763

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-52  Score=410.37  Aligned_cols=260  Identities=22%  Similarity=0.298  Sum_probs=222.9

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.+.++. +++|++||||||+++|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++......... 
T Consensus         4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~-   80 (263)
T PRK07799          4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKPPGDSF-   80 (263)
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhccccchh-
Confidence            45688886 789999999999999999999999999999999999999999999998 899999999997642100000 


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                        ..   ... ..... ..+..+..+||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        81 ------------------~~---~~~-~~~~~-~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe  137 (263)
T PRK07799         81 ------------------KD---GSY-DPSRI-DALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISE  137 (263)
T ss_pred             ------------------hh---hhh-hhhHH-HHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcc
Confidence                              00   000 00111 12335789999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                   
T Consensus       138 ~~~Gl~p~~g~~~~l~r~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------  196 (263)
T PRK07799        138 AKWSLFPMGGSAVRLVRQIPYT-VACDLLLTGRHIT-AAEAKEIGLIGHVVPDGQALDKAL-------------------  196 (263)
T ss_pred             cccCcCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCccEecCcchHHHHHH-------------------
Confidence            9999999999999999999998 9999999999999 999999999999999887654211                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++++    +|++.||.+++.+|++++...  
T Consensus       197 -------------------------------------------------~~a~----~~~~~~~~a~~~~K~~l~~~~--  221 (263)
T PRK07799        197 -------------------------------------------------ELAE----LINANGPLAVQAILRTIRETE--  221 (263)
T ss_pred             -------------------------------------------------HHHH----HHHhcChHHHHHHHHHHHHhh--
Confidence                                                             4444    799999999999999999865  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                             ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       222 -------~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~-~~-r~p~~~~~  263 (263)
T PRK07799        222 -------GMHENEAFKIDTKIGIPVFLSEDAKEGPRAFA-EK-RAPNFQGR  263 (263)
T ss_pred             -------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHH-cc-CCCCCCCC
Confidence                   56899999999999999999999999999999 67 89999763

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-52  Score=412.23  Aligned_cols=267  Identities=20%  Similarity=0.288  Sum_probs=227.3

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~~   82 (272)
T PRK06142          5 YESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQLGKD   82 (272)
T ss_pred             cceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhccccccc
Confidence            56688886 789999999999999999999999999999999999999999999998 8999999999975421100000


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                      ..                .........+...+.+++..|..+||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus        83 ~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe  146 (272)
T PRK06142         83 GL----------------ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVRE  146 (272)
T ss_pred             cc----------------ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchh
Confidence            00                00001122233444567788999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHhcccCCChHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||+ +++.+.+                   
T Consensus       147 ~~~Gl~p~~g~~~~l~~~~G~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~~l~~~a-------------------  205 (272)
T PRK06142        147 VDLGMVADVGSLQRLPRIIGDG-HLRELALTGRDID-AAEAEKIGLVNRVYDDADALLAAA-------------------  205 (272)
T ss_pred             hhhCCCCCchHHHHHHHHhCHH-HHHHHHHhCCCcC-HHHHHHcCCccEecCCHHHHHHHH-------------------
Confidence            9999999999999999999998 9999999999999 9999999999999985 5555322                   


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                       .+||+    +|++.||.+++.+|++++... 
T Consensus       206 -------------------------------------------------~~~a~----~ia~~~~~a~~~~K~~l~~~~-  231 (272)
T PRK06142        206 -------------------------------------------------HATAR----EIAAKSPLAVRGTKEVLDYMR-  231 (272)
T ss_pred             -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh-
Confidence                                                             24454    799999999999999999865 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                              ..++.+++..|...+..++.++|++||+.+|+ +| |+|+|++
T Consensus       232 --------~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~-~k-r~p~~~~  272 (272)
T PRK06142        232 --------DHRVADGLRYVATWNAAMLPSKDLTEAIAAHM-EK-RPPEFTG  272 (272)
T ss_pred             --------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHh-cC-CCCCCCC
Confidence                    45799999999999999999999999999999 67 7999974

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=3.6e-52  Score=411.25  Aligned_cols=260  Identities=22%  Similarity=0.333  Sum_probs=220.8

Q ss_pred             ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCC
Q 012534           73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPL  152 (461)
Q Consensus        73 ~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (461)
                      ++++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........        
T Consensus        14 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~--------   84 (275)
T PLN02664         14 PNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSG--------   84 (275)
T ss_pred             CCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccc--------
Confidence            3689999999999999999999999999999999999999999999998 8999999999875421100000        


Q ss_pred             CCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCC
Q 012534          153 KCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD  232 (461)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~  232 (461)
                         +     ..........++.....++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+
T Consensus        85 ---~-----~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~  156 (275)
T PLN02664         85 ---D-----RGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITAD  156 (275)
T ss_pred             ---c-----chhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCC
Confidence               0     00000112223334456777899999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHhcccCCChHHHHHHHHHhhcCCC
Q 012534          233 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP  311 (461)
Q Consensus       233 ~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~  311 (461)
                      +|++++|++++|.. ++++|++||+.++ |+||+++||||++||+ +++.+.+                           
T Consensus       157 ~g~~~~l~~~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~~---------------------------  207 (275)
T PLN02664        157 LGTLQRLPSIVGYG-NAMELALTGRRFS-GSEAKELGLVSRVFGSKEDLDEGV---------------------------  207 (275)
T ss_pred             ccHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHcCCCceeeCChhHHHHHH---------------------------
Confidence            99999999999998 9999999999999 9999999999999985 5554311                           


Q ss_pred             CCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccc
Q 012534          312 EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNE  391 (461)
Q Consensus       312 ~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~  391 (461)
                                                               .++|+    +|+++||.+++.+|++++...         
T Consensus       208 -----------------------------------------~~~a~----~ia~~~p~a~~~~K~~l~~~~---------  233 (275)
T PLN02664        208 -----------------------------------------RLIAE----GIAAKSPLAVTGTKAVLLRSR---------  233 (275)
T ss_pred             -----------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh---------
Confidence                                                     13444    799999999999999999875         


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          392 LSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       392 ~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      ..++.+.++.|...+...+.++|++||+++|+ +| |+|.|++
T Consensus       234 ~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-ek-r~p~~~~  274 (275)
T PLN02664        234 ELSVEQGLDYVATWNSAMLVSDDLNEAVSAQI-QK-RKPVFAK  274 (275)
T ss_pred             cCCHHHHHHHHHHHHHHhccChhHHHHHHHHh-cc-CCCCCCC
Confidence            46899999999999999999999999999999 67 8999975

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-52  Score=409.22  Aligned_cols=255  Identities=22%  Similarity=0.335  Sum_probs=225.0

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      .+.+.++..+++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++....   .  
T Consensus         6 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~---~--   79 (261)
T PRK08138          6 TDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATAG---A--   79 (261)
T ss_pred             CCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhccc---h--
Confidence            456777765689999999999999999999999999999999999999999999997 7999999999875310   0  


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                              ...+......++..+.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        80 ------------------------~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe  135 (261)
T PRK08138         80 ------------------------IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPE  135 (261)
T ss_pred             ------------------------hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcc
Confidence                                    00122334456778999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                    
T Consensus       136 ~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a--------------------  193 (261)
T PRK08138        136 IKVGLMPGAGGTQRLVRAVGKF-KAMRMALTGCMVP-APEALAIGLVSEVVEDEQTLPRA--------------------  193 (261)
T ss_pred             cccccCCCCcHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHH--------------------
Confidence            9999999999999999999998 9999999999999 99999999999999987765422                    


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                      .+||+    +|++.+|.+++.+|++++...  
T Consensus       194 ------------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~--  219 (261)
T PRK08138        194 ------------------------------------------------LELAR----EIARMPPLALAQIKEVVLAGA--  219 (261)
T ss_pred             ------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh--
Confidence                                                            14454    688899999999999999765  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                             ..++.+++..|.+.+..++.++|+++|+++|+ +| |+|+|++
T Consensus       220 -------~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~-~k-r~~~~~~  260 (261)
T PRK08138        220 -------DAPLDAALALERKAFQLLFDSEDQKEGMDAFL-EK-RKPAYKG  260 (261)
T ss_pred             -------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCC
Confidence                   56799999999999999999999999999999 67 8999975

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=4.1e-52  Score=408.88  Aligned_cols=258  Identities=24%  Similarity=0.368  Sum_probs=225.8

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      +..+.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......  
T Consensus         8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--   83 (266)
T PRK08139          8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAARGL--   83 (266)
T ss_pred             ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcccch--
Confidence            4566788886 799999999999999999999999999999999999999999999998 899999999987531100  


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                              .....++.....++.+|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        84 ------------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  139 (266)
T PRK08139         84 ------------------------AYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAV  139 (266)
T ss_pred             ------------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeC
Confidence                                    01112344455677889999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++| +++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                 
T Consensus       140 pe~~~Gl~p~~~-~~~l~r~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-----------------  199 (266)
T PRK08139        140 PGVNIGLFCSTP-MVALSRNVPRK-QAMEMLLTGEFID-AATAREWGLVNRVVPADALDAAVA-----------------  199 (266)
T ss_pred             cccCcCCCCCcc-HHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCccEeeChhHHHHHHH-----------------
Confidence            999999999775 56899999998 9999999999999 999999999999999877764222                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         +||+    +|+++||.+++.+|++++...
T Consensus       200 ---------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~  224 (266)
T PRK08139        200 ---------------------------------------------------RLAA----VIAAKSPAAVRIGKEAFYRQA  224 (266)
T ss_pred             ---------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc
Confidence                                                               4444    799999999999999999875


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                               ..++.++++.|...+..++.++|++||+++|+ +| |+|+|.+
T Consensus       225 ---------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~  265 (266)
T PRK08139        225 ---------EMPLADAYAYAGDVMAENMMAEDAEEGIDAFL-EK-RPPEWRG  265 (266)
T ss_pred             ---------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence                     56799999999999999999999999999999 67 8999975

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-52  Score=407.40  Aligned_cols=254  Identities=26%  Similarity=0.357  Sum_probs=223.3

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .+.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......      
T Consensus         3 ~i~~~~-~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~------   73 (257)
T PRK07658          3 FLSVRV-EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVTEA------   73 (257)
T ss_pred             eEEEEe-eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccCch------
Confidence            467776 78999999999986 999999999999999999999999999999998 899999999987531100      


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                          .....+......++.+|..+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        74 --------------------~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~  133 (257)
T PRK07658         74 --------------------EQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELN  133 (257)
T ss_pred             --------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccc
Confidence                                001113333455778899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                     
T Consensus       134 ~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------  190 (257)
T PRK07658        134 LGLIPGFAGTQRLPRYVGKA-KALEMMLTSEPIT-GAEALKWGLVNGVFPEETLLDDAK---------------------  190 (257)
T ss_pred             cCCCCCCcHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHcCCcCeecChhHHHHHHH---------------------
Confidence            99999999999999999997 9999999999999 999999999999999877754222                     


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                     ++|+    +|+++||.+++.+|++++...    
T Consensus       191 -----------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~----  215 (257)
T PRK07658        191 -----------------------------------------------KLAK----KIAGKSPATTRAVLELLQTTK----  215 (257)
T ss_pred             -----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh----
Confidence                                                           3444    789999999999999999765    


Q ss_pred             CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                           ..++.+.++.|...+..++.++|++||+++|+ +| |+|+|++
T Consensus       216 -----~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~~~  256 (257)
T PRK07658        216 -----SSSYYEGVKREAKIFGEVFTSEDAKEGVQAFL-EK-RKPSFSG  256 (257)
T ss_pred             -----cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCC
Confidence                 45799999999999999999999999999999 67 8999975

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5e-52  Score=407.55  Aligned_cols=259  Identities=24%  Similarity=0.351  Sum_probs=223.7

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++ |+++++|||+|.| ++||+|+|++++.......  
T Consensus         2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~--   76 (262)
T PRK08140          2 MYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTPGGA--   76 (262)
T ss_pred             CCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhcccccc--
Confidence            355678886 7899999999999999999999999999999999 9999999999998 8999999999874311000  


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHH-HHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFT-AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                      .                      ......+. ....++..+.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        77 ~----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~  134 (262)
T PRK08140         77 M----------------------PDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQ  134 (262)
T ss_pred             c----------------------hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEec
Confidence            0                      00000111 123466788999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                  
T Consensus       135 pe~~~G~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a------------------  194 (262)
T PRK08140        135 AFVKIGLVPDSGGTWFLPRLVGMA-RALGLALLGEKLS-AEQAEQWGLIWRVVDDAALADEA------------------  194 (262)
T ss_pred             cccccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHcCCccEeeChHHHHHHH------------------
Confidence            999999999999999999999997 9999999999999 99999999999999987765322                  


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                        .++|+    +|+++||.+++.+|++++...
T Consensus       195 --------------------------------------------------~~~a~----~ia~~~~~a~~~~K~~l~~~~  220 (262)
T PRK08140        195 --------------------------------------------------QQLAA----HLATQPTRGLALIKQAMNASA  220 (262)
T ss_pred             --------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh
Confidence                                                              14444    799999999999999999765


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                               ..++.++++.|...+..++.++|++||+++|+ +| |+|.|.+
T Consensus       221 ---------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k-r~p~~~~  261 (262)
T PRK08140        221 ---------TNTLDAQLDLERDLQREAGRSADYAEGVSAFL-EK-RAPRFTG  261 (262)
T ss_pred             ---------hCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCCC
Confidence                     56899999999999999999999999999999 67 7999975

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.5e-52  Score=406.09  Aligned_cols=250  Identities=21%  Similarity=0.264  Sum_probs=217.6

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .+.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....  .  .  
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~--~--~--   75 (254)
T PRK08252          4 EVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARGE--R--P--   75 (254)
T ss_pred             eEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhccc--c--h--
Confidence            467776 789999999999999999999999999999999999999999999998 8999999999875310  0  0  


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                        .  .   ....+..++  ...+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        76 ------------------~--~---~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~  130 (254)
T PRK08252         76 ------------------S--I---PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVK  130 (254)
T ss_pred             ------------------h--h---hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhh
Confidence                              0  0   001111111  24799999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. ++++|++||++++ |+||+++||||++||++++.+                        
T Consensus       131 ~Gl~p~~g~~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~------------------------  184 (254)
T PRK08252        131 RGLVAAGGGLLRLPRRIPYH-IAMELALTGDMLT-AERAHELGLVNRLTEPGQALD------------------------  184 (254)
T ss_pred             cCCCCCchHHHHHHHHcCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCcchHHH------------------------
Confidence            99999999999999999998 9999999999999 999999999999999887653                        


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                      .+.+.+++|+++||.+++.+|++++...    
T Consensus       185 ------------------------------------------------~a~~~a~~l~~~~~~a~~~~K~~l~~~~----  212 (254)
T PRK08252        185 ------------------------------------------------AALELAERIAANGPLAVAASKRIVVESG----  212 (254)
T ss_pred             ------------------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhh----
Confidence                                                            2223334799999999999999999865    


Q ss_pred             CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                           ..++.++++.|...+..++.++|++||+++|+ +| |+|+|..
T Consensus       213 -----~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~-~k-r~p~~~~  253 (254)
T PRK08252        213 -----DWSEDEMFARQRELIAPVFTSADAKEGATAFA-EK-RAPVWTG  253 (254)
T ss_pred             -----cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence                 45799999999999999999999999999999 67 8999975

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-52  Score=408.32  Aligned_cols=252  Identities=20%  Similarity=0.246  Sum_probs=218.3

Q ss_pred             EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCC
Q 012534           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (461)
Q Consensus        69 ~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (461)
                      .++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... .     
T Consensus         2 ~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~-~-----   73 (255)
T PRK06563          2 SRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLAAG-G-----   73 (255)
T ss_pred             eEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccccc-h-----
Confidence            4555 689999999999999999999999999999999999999999999998 8999999999875411000 0     


Q ss_pred             CCCCCCCCcchhhhhhhhHHHHHHHHHHHH-HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          149 KVPLKCGDVKEISTQNQLSEMIEVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                           ..+...... +...+.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus        74 ---------------------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~  132 (255)
T PRK06563         74 ---------------------FPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQR  132 (255)
T ss_pred             ---------------------hhhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhc
Confidence                                 001111112 2235789999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                       
T Consensus       133 Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a-----------------------  187 (255)
T PRK06563        133 GILPFGGATLRFPQAAGWG-NAMRYLLTGDEFD-AQEALRLGLVQEVVPPGEQLERA-----------------------  187 (255)
T ss_pred             CCCCCccHHHHHHHHhhHH-HHHHHHHcCCCcC-HHHHHHcCCCcEeeCHHHHHHHH-----------------------
Confidence            9999999999999999998 9999999999999 99999999999999987765422                       


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                   .+||+    +|+++||.+++.+|++++...     
T Consensus       188 ---------------------------------------------~~~a~----~la~~~~~a~~~~K~~~~~~~-----  213 (255)
T PRK06563        188 ---------------------------------------------IELAE----RIARAAPLGVQATLASARAAV-----  213 (255)
T ss_pred             ---------------------------------------------HHHHH----HHHhcCHHHHHHHHHHHHHhh-----
Confidence                                                         14554    789999999999999999765     


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                          ..++.++++.|...+..++.++|++||+++|+ +| |+|+|++
T Consensus       214 ----~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~  254 (255)
T PRK06563        214 ----REGEAAAAAQLPPELRPLFTSEDAKEGVQAFL-ER-RPARFKG  254 (255)
T ss_pred             ----cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence                46899999999999999999999999999999 67 8999975

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=4.8e-52  Score=406.33  Aligned_cols=254  Identities=25%  Similarity=0.361  Sum_probs=220.3

Q ss_pred             EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCC
Q 012534           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (461)
Q Consensus        69 ~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (461)
                      .++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+|||||.| ++||+|+|++++..... .  .    
T Consensus         2 ~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~~-~--~----   71 (256)
T TIGR02280         2 LSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTPG-G--A----   71 (256)
T ss_pred             eEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhccc-c--c----
Confidence            4565 7899999999999999999999999999999999999 9999999998 89999999998753110 0  0    


Q ss_pred             CCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccC
Q 012534          149 KVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG  228 (461)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lG  228 (461)
                                     ...  ...+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|
T Consensus        72 ---------------~~~--~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG  134 (256)
T TIGR02280        72 ---------------PDL--GRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIG  134 (256)
T ss_pred             ---------------hhH--HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcC
Confidence                           000  000111123466789999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhc
Q 012534          229 LFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS  308 (461)
Q Consensus       229 l~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~  308 (461)
                      ++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                       
T Consensus       135 ~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-----------------------  189 (256)
T TIGR02280       135 LIPDSGGTWSLPRLVGRA-RAMGLAMLGEKLD-ARTAASWGLIWQVVDDAALMDEAQ-----------------------  189 (256)
T ss_pred             CCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCcceeeChHHHHHHHH-----------------------
Confidence            999999999999999997 9999999999999 999999999999999877654222                       


Q ss_pred             CCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCC
Q 012534          309 SDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKT  388 (461)
Q Consensus       309 ~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~  388 (461)
                                                                   +||+    +|++.||.+++.+|++++...      
T Consensus       190 ---------------------------------------------~~a~----~la~~~~~~~~~~K~~l~~~~------  214 (256)
T TIGR02280       190 ---------------------------------------------ALAV----HLAAQPTRGLALTKRAIQAAA------  214 (256)
T ss_pred             ---------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh------
Confidence                                                         4454    799999999999999999865      


Q ss_pred             ccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          389 DNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       389 ~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                         ...+.+.++.|.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus       215 ---~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~  255 (256)
T TIGR02280       215 ---TNSLDTQLDLERDLQRELGRSADYAEGVTAFL-DK-RNPQFTG  255 (256)
T ss_pred             ---cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHH-cC-CCCCCCC
Confidence               46799999999999999999999999999999 67 8999975

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-52  Score=408.52  Aligned_cols=260  Identities=21%  Similarity=0.305  Sum_probs=223.0

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.........
T Consensus         2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (262)
T PRK05995          2 MYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYSDD   79 (262)
T ss_pred             CCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccCch
Confidence            356688886 789999999999999999999999999999999999999999999998 899999999987532110000


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                              ...........++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        80 ------------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~p  135 (262)
T PRK05995         80 ------------------------ENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLS  135 (262)
T ss_pred             ------------------------hhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCc
Confidence                                    00011233456778899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++ +|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                  
T Consensus       136 e~~~Gl~p~~g~~-~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------  194 (262)
T PRK05995        136 EVRLGLIPATISP-YVIRAMGER-AARRYFLTAERFD-AAEALRLGLVHEVVPAEALDAKVD------------------  194 (262)
T ss_pred             ccccccCccchHH-HHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCCeecCHHHHHHHHH------------------
Confidence            9999999988876 488999998 9999999999999 999999999999999877654222                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|++.||.+++.+|++++... 
T Consensus       195 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-  219 (262)
T PRK05995        195 --------------------------------------------------ELLA----ALVANSPQAVRAGKRLVRDVA-  219 (262)
T ss_pred             --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh-
Confidence                                                              4444    789999999999999999765 


Q ss_pred             hcCCCccccCCHHHH-HHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~-l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                              ..++.+. ++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       220 --------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~-~k-r~p~~~~~  262 (262)
T PRK05995        220 --------GRPIDAALIADTASRIALIRATEEAREGVAAFL-EK-RKPAWRGR  262 (262)
T ss_pred             --------cCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCCC
Confidence                    4578888 8888888888999999999999999 67 89999864

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-51  Score=408.42  Aligned_cols=258  Identities=22%  Similarity=0.315  Sum_probs=224.9

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........    
T Consensus        18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~----   91 (277)
T PRK08258         18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLTKMD----   91 (277)
T ss_pred             ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhccccccC----
Confidence            677877 789999999999999999999999999999999999999999999998 89999999998743110000    


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                         ......+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        92 -------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~  152 (277)
T PRK08258         92 -------------------MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTR  152 (277)
T ss_pred             -------------------hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccc
Confidence                               0011123333456778899999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          227 IGLFP-DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       227 lGl~P-~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      +|++| ++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                     
T Consensus       153 ~Gl~p~~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a---------------------  209 (277)
T PRK08258        153 VGLAGADMGACALLPRIIGQG-RASELLYTGRSMS-AEEGERWGFFNRLVEPEELLAEA---------------------  209 (277)
T ss_pred             cCcCCCCchHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCCcEecCHHHHHHHH---------------------
Confidence            99995 789999999999998 9999999999999 99999999999999987765322                     


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                     .++|+    +|+++||.+++.+|++++...   
T Consensus       210 -----------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~---  235 (277)
T PRK08258        210 -----------------------------------------------QALAR----RLAAGPTFAHGMTKTMLHQEW---  235 (277)
T ss_pred             -----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhc---
Confidence                                                           14444    799999999999999999865   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                            ..++.+.++.|...+..++.++|++||+++|+ +| |+|+|++
T Consensus       236 ------~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~~~~  276 (277)
T PRK08258        236 ------DMGLEEAIEAEAQAQAICMQTEDFRRAYEAFV-AK-RKPVFEG  276 (277)
T ss_pred             ------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence                  56899999999999999999999999999999 67 8999975

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.1e-52  Score=406.57  Aligned_cols=261  Identities=21%  Similarity=0.297  Sum_probs=223.5

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNL-DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~-~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      .+.++. +++|++||||||+++|+||. +|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...........
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (266)
T PRK09245          4 FLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGSP   81 (266)
T ss_pred             ceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhccccccccc
Confidence            477776 78999999999999999995 9999999999999999999999999998 89999999999753211000000


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                          ......+...+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        82 --------------------~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~  141 (266)
T PRK09245         82 --------------------ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFV  141 (266)
T ss_pred             --------------------hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEccccc
Confidence                                000011222234567789999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                     
T Consensus       142 ~~G~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a---------------------  198 (266)
T PRK09245        142 KLGLIPGDGGAWLLPRIIGMA-RAAEMAFTGDAID-AATALEWGLVSRVVPADQLLPAA---------------------  198 (266)
T ss_pred             ccCcCCCcchhhhHHHHhhHH-HHHHHHHcCCCcC-HHHHHHcCCcceecCHHHHHHHH---------------------
Confidence            999999999999999999997 9999999999999 99999999999999987765422                     


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                     .+|++    +|+++||.+++.+|++++...   
T Consensus       199 -----------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~---  224 (266)
T PRK09245        199 -----------------------------------------------RALAE----RIAANPPHALRLTKRLLREGQ---  224 (266)
T ss_pred             -----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh---
Confidence                                                           24444    799999999999999999865   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                            ..++.+.+..|......++.++|++||+++|+ +| |+|.|++
T Consensus       225 ------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~  265 (266)
T PRK09245        225 ------HASLDTLLELSAAYQALAHHTADHREAVDAFL-EK-RPPVFTG  265 (266)
T ss_pred             ------cCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHH-cC-CCCCCCC
Confidence                  45799999999999999999999999999999 67 8999975

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=4.6e-52  Score=406.41  Aligned_cols=255  Identities=20%  Similarity=0.232  Sum_probs=213.7

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      |+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++...   ....
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~---~~~~   76 (256)
T TIGR03210         1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG---YDGR   76 (256)
T ss_pred             CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc---ccch
Confidence            34577776 7899999999999999999999999999999999999999999999986799999999987421   0000


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                               ..+......++..|.++||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus        77 -------------------------~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe  131 (256)
T TIGR03210        77 -------------------------GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVG  131 (256)
T ss_pred             -------------------------hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEeccc
Confidence                                     0011223456778999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                   
T Consensus       132 ~~~G~~~~~~~~~~l~~~vG~~-~A~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------  190 (256)
T TIGR03210       132 PKVGSVDPGYGTALLARVVGEK-KAREIWYLCRRYT-AQEALAMGLVNAVVPHDQLDAEVQ-------------------  190 (256)
T ss_pred             ccccccCCccHHHHHHHHhCHH-HHHHHHHhCCCcC-HHHHHHcCCceeeeCHHHHHHHHH-------------------
Confidence            9999998888899999999998 9999999999999 999999999999999877654222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++|+    +|+++||.+++.+|++++.... 
T Consensus       191 -------------------------------------------------~~a~----~ia~~~~~a~~~~K~~l~~~~~-  216 (256)
T TIGR03210       191 -------------------------------------------------KWCD----EIVEKSPTAIAIAKRSFNMDTA-  216 (256)
T ss_pred             -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhhc-
Confidence                                                             4444    7999999999999999987541 


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                             ...-.+.  .|...+..++.++|++||+++|+ +| |+|+|++
T Consensus       217 -------~~~~~~~--~~~~~~~~~~~~~d~~e~~~af~-~k-r~p~~~~  255 (256)
T TIGR03210       217 -------HQRGIAG--MGMYALKLYYDTAESREGVKAFQ-EK-RKPEFRK  255 (256)
T ss_pred             -------ccchHHH--HHHHHHHHHccChhHHHHHHHHh-cc-CCCCCCC
Confidence                   1111112  24456677889999999999999 67 8999975

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.7e-52  Score=405.48  Aligned_cols=259  Identities=23%  Similarity=0.349  Sum_probs=220.9

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.+.+++.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++......... 
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~-   80 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTADRA-   80 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcccchh-
Confidence            456778763468999999999999999999999999999999999999999999998 899999999987532110000 


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                             ........+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus        81 -----------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe  137 (262)
T PRK07468         81 -----------------------TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTE  137 (262)
T ss_pred             -----------------------hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCch
Confidence                                   001122334557788999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|+++++++ +|.. ++++|++||++++ |+||+++||||++||.+++.+.+.                   
T Consensus       138 ~~~Gl~p~~g~~~~~~~-vG~~-~a~~lll~g~~~~-a~eA~~~Glv~~v~~~~~l~~~~~-------------------  195 (262)
T PRK07468        138 TRLGLIPATISPYVVAR-MGEA-NARRVFMSARLFD-AEEAVRLGLLSRVVPAERLDAAVE-------------------  195 (262)
T ss_pred             hccCCCcccchhhHHhh-ccHH-HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHH-------------------
Confidence            99999999999986654 8997 9999999999999 999999999999999876653222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++|+    +|++++|.+++.+|++++...  
T Consensus       196 -------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~--  220 (262)
T PRK07468        196 -------------------------------------------------AEVT----PYLSCAPGAVAAAKALVRALG--  220 (262)
T ss_pred             -------------------------------------------------HHHH----HHHhcCHHHHHHHHHHHHhhh--
Confidence                                                             3444    789999999999999998754  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                             ...+.+.++.|...+..++.++|++||+++|+ +| |+|+|+.
T Consensus       221 -------~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~-~k-r~~~~~~  261 (262)
T PRK07468        221 -------APIDEAVIDATIEALADTWETEEAREGIAAFF-DK-RAPAWRG  261 (262)
T ss_pred             -------ccChHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCC
Confidence                   44678999999999999999999999999999 67 8999964

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=6.2e-52  Score=406.13  Aligned_cols=257  Identities=20%  Similarity=0.263  Sum_probs=216.8

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++....... .  
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~--   78 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYID-D--   78 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccc-h--
Confidence            3466665368999999999999999999999999999999999999999999999867999999999864210000 0  


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                        ..   . .. .....++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        79 ------------------~~---~-~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~  135 (259)
T TIGR01929        79 ------------------SG---V-HR-LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGP  135 (259)
T ss_pred             ------------------hh---H-HH-HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCccc
Confidence                              00   0 00 1123466788999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                     
T Consensus       136 ~~G~~p~~~~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a---------------------  192 (259)
T TIGR01929       136 KVGSFDGGYGSSYLARIVGQK-KAREIWFLCRQYD-AEQALDMGLVNTVVPLADLEKET---------------------  192 (259)
T ss_pred             ccccCCCccHHHHHHHHhHHH-HHHHHHHhCCccC-HHHHHHcCCcccccCHHHHHHHH---------------------
Confidence            999999999999999999998 9999999999999 99999999999999987765322                     


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                     .++|+    +|++.||.+++.+|++++...   
T Consensus       193 -----------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~---  218 (259)
T TIGR01929       193 -----------------------------------------------VRWCR----EILQKSPMAIRMLKAALNADC---  218 (259)
T ss_pred             -----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh---
Confidence                                                           24444    799999999999999998754   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                            . .....+..|...+...+.++|++||+++|+ +| |+|+|+.
T Consensus       219 ------~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~~~~  258 (259)
T TIGR01929       219 ------D-GQAGLQELAGNATMLFYMTEEGQEGRNAFL-EK-RQPDFSK  258 (259)
T ss_pred             ------c-cchHHHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCCC
Confidence                  2 234556667788888999999999999999 67 8999974

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-51  Score=403.45  Aligned_cols=250  Identities=21%  Similarity=0.287  Sum_probs=219.8

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ...+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... .    
T Consensus         5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~----   79 (256)
T PRK06143          5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLD-Q----   79 (256)
T ss_pred             cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcC-h----
Confidence            34577776578999999999999999999999999999999999999999999999867999999999875311 0    


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                            .....+...+..++..|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        80 ----------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe  137 (256)
T PRK06143         80 ----------------------ASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPE  137 (256)
T ss_pred             ----------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCc
Confidence                                  0111234445667888999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|+ |++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                   
T Consensus       138 ~~~G~-p~~~~~~~l~~~iG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------  195 (256)
T PRK06143        138 VRVGI-PSVIHAALLPRLIGWA-RTRWLLLTGETID-AAQALAWGLVDRVVPLAELDAAVE-------------------  195 (256)
T ss_pred             cccCC-CCccHHHHHHHhcCHH-HHHHHHHcCCcCC-HHHHHHCCCcCeecCHHHHHHHHH-------------------
Confidence            99998 8888899999999998 9999999999999 999999999999999877654222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++|+    +|+.+||.+++.+|++++...  
T Consensus       196 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  220 (256)
T PRK06143        196 -------------------------------------------------RLAA----SLAGCGPQALRQQKRLLREWE--  220 (256)
T ss_pred             -------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHHc--
Confidence                                                             4444    799999999999999999865  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                             ..++.+.+..|...+..++.++|++||+++|+ +|
T Consensus       221 -------~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~-ek  254 (256)
T PRK06143        221 -------DMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFL-NR  254 (256)
T ss_pred             -------cCCHHHHHHHHHHHHHHHhcChHHHHHHHHHH-hh
Confidence                   56899999999999999999999999999999 66

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-51  Score=403.77  Aligned_cols=255  Identities=28%  Similarity=0.370  Sum_probs=223.9

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.+.++. +++|++||||||+++|++|.+|+.+|.++++.+ .|+++|+|||+|.| ++||+|+|++++......    
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~----   77 (260)
T PRK07659          5 MESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSNDE----   77 (260)
T ss_pred             CceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhccCc----
Confidence            35588887 789999999999999999999999999999999 58899999999998 899999999987531100    


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                            .....++....+++..+..+||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        78 ----------------------~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe  135 (260)
T PRK07659         78 ----------------------SKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNF  135 (260)
T ss_pred             ----------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCch
Confidence                                  0112244555667888999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++| ++++.+.+                    
T Consensus       136 ~~~Gl~p~~g~~~~L~~~vg~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv-~~~~~~~a--------------------  192 (260)
T PRK07659        136 IGIGLIPDGGGHFFLQKRVGEN-KAKQIIWEGKKLS-ATEALDLGLIDEVI-GGDFQTAA--------------------  192 (260)
T ss_pred             hhcCCCCCCchhhhHHHhcCHH-HHHHHHHhCCccC-HHHHHHcCChHHHh-hhHHHHHH--------------------
Confidence            9999999999999999999998 9999999999999 99999999999999 66665322                    


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                      .++++    +|+++||.+++.+|++++...  
T Consensus       193 ------------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~--  218 (260)
T PRK07659        193 ------------------------------------------------KQKIS----EWLQKPLKAMIETKQIYCELN--  218 (260)
T ss_pred             ------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh--
Confidence                                                            13444    799999999999999999765  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                             ..++.+.++.|.+.+...+.++|++||+.+|+ +| |+|+|++
T Consensus       219 -------~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~~~  259 (260)
T PRK07659        219 -------RSQLEQVLQLEKRAQYAMRQTADHKEGIRAFL-EK-RLPVFKG  259 (260)
T ss_pred             -------cCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHh-cC-CCCCCCC
Confidence                   56899999999999999999999999999999 67 8999975

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-51  Score=404.97  Aligned_cols=263  Identities=23%  Similarity=0.367  Sum_probs=225.8

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP-RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~-~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      .|+.+.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+ ++|+|||||.| ++||+|+|++++........
T Consensus         2 ~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~   79 (266)
T PRK05981          2 QFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRESD   79 (266)
T ss_pred             CcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhccccccc
Confidence            467788887 6899999999999999999999999999999999876 49999999998 89999999998753110000


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                      ..                     ......+...+..++.+|.++||||||+|||+|+|||++|+++||||||+++++|++
T Consensus        80 ~~---------------------~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~  138 (266)
T PRK05981         80 SG---------------------GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQ  138 (266)
T ss_pred             cc---------------------chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEec
Confidence            00                     000011223345677889999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++|||+++||++++.+.+                  
T Consensus       139 ~e~~lG~~p~~g~~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a------------------  198 (266)
T PRK05981        139 AFRRIGLVPDGGSTWLLPRLVGKA-RAMELSLLGEKLP-AETALQWGLVNRVVDDAELMAEA------------------  198 (266)
T ss_pred             hHhhcCCCCCccHHHHHHHHhHHH-HHHHHHHhCCCcC-HHHHHHcCCceEeeCHhHHHHHH------------------
Confidence            999999999999999999999997 9999999999999 99999999999999987765422                  


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                        .+||+    +|+..||.+++.+|++++...
T Consensus       199 --------------------------------------------------~~~a~----~l~~~~~~a~~~~K~~~~~~~  224 (266)
T PRK05981        199 --------------------------------------------------MKLAH----ELANGPTVALGLIRKLYWDSP  224 (266)
T ss_pred             --------------------------------------------------HHHHH----HHHcCCHHHHHHHHHHHHHhh
Confidence                                                              14554    788999999999999998765


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                               ..++.+.++.|...+..++.++|++||+.+|+ +| |+|+|++
T Consensus       225 ---------~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~-~k-r~~~~~~  265 (266)
T PRK05981        225 ---------ENDFEEQLNLEREAQRIAGKTEDFKEGVGAFL-QK-RPAQFKG  265 (266)
T ss_pred             ---------hcCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCCC
Confidence                     46799999999999999999999999999999 67 8999975

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=9.2e-52  Score=406.17  Aligned_cols=260  Identities=23%  Similarity=0.329  Sum_probs=219.6

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .|+.|.++.++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... .
T Consensus         3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~   80 (265)
T PRK05674          3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSADLD-Y   80 (265)
T ss_pred             CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhccccc-c
Confidence            3677888874478999999999999999999999999999999999999999999998 8999999999875311000 0


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                      .                       ........+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        81 ~-----------------------~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~p  137 (265)
T PRK05674         81 N-----------------------TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLS  137 (265)
T ss_pred             h-----------------------hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCc
Confidence            0                       00011223346777899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++ ++++++|.. ++++|+|||+.|+ |+||+++|||+++||++++.+.+                   
T Consensus       138 e~~~Gi~p~~~~~-~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a-------------------  195 (265)
T PRK05674        138 EVRIGLAPAVISP-FVVKAIGER-AARRYALTAERFD-GRRARELGLLAESYPAAELEAQV-------------------  195 (265)
T ss_pred             ccccCCCcchhHH-HHHHHhCHH-HHHHHHHhCcccC-HHHHHHCCCcceecCHHHHHHHH-------------------
Confidence            9999999988766 488999998 9999999999999 99999999999999987765422                   


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                       .+||+    +|+++||.+++.+|++++... 
T Consensus       196 -------------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~~-  221 (265)
T PRK05674        196 -------------------------------------------------EAWIA----NLLLNSPQALRASKDLLREVG-  221 (265)
T ss_pred             -------------------------------------------------HHHHH----HHHhcCHHHHHHHHHHHHHhh-
Confidence                                                             24554    799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHH-HHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKY-EYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~-E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                              ..++.+.+.. +...+..++.++|++||+++|+ +| |+|+|+.
T Consensus       222 --------~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~-~k-r~p~~~~  263 (265)
T PRK05674        222 --------DGELSPALRRYCENAIARIRVSAEGQEGLRAFL-EK-RTPAWQT  263 (265)
T ss_pred             --------ccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cc-CCCCCCC
Confidence                    4567777765 4466777889999999999999 67 8999974

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=9.8e-52  Score=405.08  Aligned_cols=257  Identities=17%  Similarity=0.238  Sum_probs=221.9

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecC-CCccccCCChhhHHHHhhhcC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSG-PRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G-~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      +++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+|||||.| +++||+|+|++++.... .. 
T Consensus         2 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~-~~-   77 (261)
T PRK11423          2 SMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG-RD-   77 (261)
T ss_pred             CccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc-cc-
Confidence            466788887 7899999999999999999999999999999999988 9999999974 48999999999874310 00 


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                                ...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++
T Consensus        78 --------------------------~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~  131 (261)
T PRK11423         78 --------------------------PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAM  131 (261)
T ss_pred             --------------------------HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecC
Confidence                                      001223345677889999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|+++++++++|.. ++++|+++|++++ |+||+++||||+|||++++.+                    
T Consensus       132 pe~~~Gl~~~~g~~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~l~~--------------------  189 (261)
T PRK11423        132 TPANLGVPYNLSGILNFTNDAGFH-IVKEMFFTASPIT-AQRALAVGILNHVVEVEELED--------------------  189 (261)
T ss_pred             chhhcCCCCCccHHHHHHHHhHHH-HHHHHHHcCCCcC-HHHHHHcCCcCcccCHHHHHH--------------------
Confidence            999999999999999999999998 9999999999999 999999999999999877653                    


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                          .+.+++++|+++||.+++.+|++++...
T Consensus       190 ----------------------------------------------------~a~~~a~~l~~~~~~a~~~~K~~~~~~~  217 (261)
T PRK11423        190 ----------------------------------------------------FTLQMAHHISEKAPLAIAVIKEQLRVLG  217 (261)
T ss_pred             ----------------------------------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence                                                                2333344799999999999999998653


Q ss_pred             hhcCCCccccCCH-HHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKL-SGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       383 ~~~~~~~~~~~~l-~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                              ....+ .++++.|.+....++.++|++||+.+|+ +| |+|+|++
T Consensus       218 --------~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~-~k-r~p~~~~  260 (261)
T PRK11423        218 --------EAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFL-EK-RKPVFVG  260 (261)
T ss_pred             --------ccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHh-cc-CCCCCCC
Confidence                    11233 6888889899899999999999999999 67 8999975

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-51  Score=403.57  Aligned_cols=255  Identities=24%  Similarity=0.333  Sum_probs=218.3

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      ..+.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.......  
T Consensus         6 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~--   82 (262)
T PRK06144          6 STDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAE--   82 (262)
T ss_pred             CCCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchh--
Confidence            455688886 78999999999999999999999999999999999999999999999867999999999875311000  


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                              ....+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        83 ------------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~p  138 (262)
T PRK06144         83 ------------------------DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFP  138 (262)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeech
Confidence                                    01113333456777899999999999999999999999999999999999999999


Q ss_pred             ccc-cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          224 ENG-IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       224 e~~-lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      |++ +|++|++|++++|++++|.. +++++++||+.++ |+||+++||||++||++++.+.+.                 
T Consensus       139 e~~~~G~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-----------------  199 (262)
T PRK06144        139 IARTLGNCLSMSNLARLVALLGAA-RVKDMLFTARLLE-AEEALAAGLVNEVVEDAALDARAD-----------------  199 (262)
T ss_pred             hHHhccCCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHcCCcCeecCHHHHHHHHH-----------------
Confidence            997 99999999999999999998 9999999999999 999999999999999877654221                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         +||+    +|+++||.+++.+|+.++...
T Consensus       200 ---------------------------------------------------~~a~----~i~~~~~~a~~~~K~~l~~~~  224 (262)
T PRK06144        200 ---------------------------------------------------ALAE----LLAAHAPLTLRATKEALRRLR  224 (262)
T ss_pred             ---------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh
Confidence                                                               4444    799999999999999998754


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                               ...+    +.+.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus       225 ---------~~~l----~~~~~~~~~~~~~~~~~e~~~af~-~k-r~p~~~~  261 (262)
T PRK06144        225 ---------REGL----PDGDDLIRMCYMSEDFREGVEAFL-EK-RPPKWKG  261 (262)
T ss_pred             ---------hcCH----HHHHHHHHHHhcChHHHHHHHHHh-cC-CCCCCCC
Confidence                     2233    445567777889999999999999 67 8999975

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=2e-51  Score=403.03  Aligned_cols=253  Identities=23%  Similarity=0.386  Sum_probs=219.0

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .+.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.......     
T Consensus         4 ~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-----   76 (261)
T PRK03580          4 SLHTTR-NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-----   76 (261)
T ss_pred             eEEEEE-ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-----
Confidence            477776 7899999999996 599999999999999999999999999999999867999999999875311000     


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                       .      .+....+..+.++..+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        77 -----------------~------~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~  133 (261)
T PRK03580         77 -----------------A------DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAK  133 (261)
T ss_pred             -----------------h------hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccc
Confidence                             0      01111234566789999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. +++++++||+.++ |+||+++|||+++||++++.+.+.                     
T Consensus       134 ~G~~p~~g~~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------  190 (261)
T PRK03580        134 LGIVPDSGGVLRLPKRLPPA-IANEMVMTGRRMD-AEEALRWGIVNRVVPQAELMDRAR---------------------  190 (261)
T ss_pred             cCcCCCccHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCCcEecCHhHHHHHHH---------------------
Confidence            99999999999999999998 9999999999999 999999999999999877764222                     


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                     +||+    +|++++|.+++.+|++++...    
T Consensus       191 -----------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~----  215 (261)
T PRK03580        191 -----------------------------------------------ELAQ----QLVNSAPLAIAALKEIYRETS----  215 (261)
T ss_pred             -----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh----
Confidence                                                           4444    799999999999999999865    


Q ss_pred             CCccccCCHHHHHHHHHH----HHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          387 KTDNELSKLSGVMKYEYR----VALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~----~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                           ..++.++++.|..    .+..++.++|++||+++|+ +| |+|+|+.
T Consensus       216 -----~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~-ek-r~~~~~~  260 (261)
T PRK03580        216 -----EMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFA-EK-RDPVWKG  260 (261)
T ss_pred             -----cCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHh-cC-CCCCCCC
Confidence                 5679999998874    6677899999999999999 67 8999975

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-51  Score=404.29  Aligned_cols=259  Identities=20%  Similarity=0.248  Sum_probs=217.7

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .|+.|.++.++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......   
T Consensus         9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~---   84 (268)
T PRK07327          9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMADD---   84 (268)
T ss_pred             CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhccCc---
Confidence            4677888864578999999999999999999999999999999999999999999998 899999999987531100   


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                            ......++...+.++..|..+||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        85 ----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~p  142 (268)
T PRK07327         85 ----------------------FEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDG  142 (268)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCc
Confidence                                  0011123444456778899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||++++ |+||+++|||+++||++++.+.+.                  
T Consensus       143 e~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------  202 (268)
T PRK07327        143 HTRLGVAAGDHAAIVWPLLCGMA-KAKYYLLLCEPVS-GEEAERIGLVSLAVDDDELLPKAL------------------  202 (268)
T ss_pred             ccccCCCCCcchhhHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHH------------------
Confidence            99999999999999999999998 9999999999999 999999999999999877654222                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|+++||.+++.+|++++....
T Consensus       203 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~~  228 (268)
T PRK07327        203 --------------------------------------------------EVAE----RLAAGSQTAIRWTKYALNNWLR  228 (268)
T ss_pred             --------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhhh
Confidence                                                              3444    7999999999999999996531


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      .      ....+.+.+..|    ...+.++|++||+.+|+ +| |+|+|++
T Consensus       229 ~------~~~~~~~~~~~~----~~~~~~~d~~eg~~af~-ek-r~p~~~~  267 (268)
T PRK07327        229 M------AGPTFDTSLALE----FMGFSGPDVREGLASLR-EK-RAPDFPG  267 (268)
T ss_pred             h------hhhhHHHHHHHH----HHHccChhHHHHHHHHH-hc-CCCCCCC
Confidence            0      012355555544    34678999999999999 67 8999975

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-51  Score=400.71  Aligned_cols=255  Identities=24%  Similarity=0.328  Sum_probs=224.9

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      +.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........     
T Consensus         5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~-----   77 (260)
T PRK07511          5 LLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRAKPP-----   77 (260)
T ss_pred             eEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcccccc-----
Confidence            66776 789999999999999999999999999999999999999999999997 89999999998754110000     


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                         .....++...+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus        78 -------------------~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~  138 (260)
T PRK07511         78 -------------------SVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKV  138 (260)
T ss_pred             -------------------hhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEecccccc
Confidence                               0112244555677888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                       
T Consensus       139 Gl~p~~g~~~~l~~~vg~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~~~~a-----------------------  193 (260)
T PRK07511        139 GLTPDGGGSWFLARALPRQ-LATELLLEGKPIS-AERLHALGVVNRLAEPGQALAEA-----------------------  193 (260)
T ss_pred             CcCCCchHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHcCCccEeeCchHHHHHH-----------------------
Confidence            9999999999999999997 9999999999999 99999999999999987765421                       


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                   .+||+    +|+++||.+++.+|++++...     
T Consensus       194 ---------------------------------------------~~~a~----~l~~~~~~~~~~~K~~l~~~~-----  219 (260)
T PRK07511        194 ---------------------------------------------LALAD----QLAAGSPNALARIKSLIADAP-----  219 (260)
T ss_pred             ---------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh-----
Confidence                                                         14554    788999999999999999875     


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN  433 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~  433 (461)
                          ..++.++++.|...+..++.++|+++|+++|+ +| ++|+|+
T Consensus       220 ----~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~-~~-r~~~~~  259 (260)
T PRK07511        220 ----EATLAAQLEAERDHFVASLHHADALEGIAAFL-EK-RAPDYK  259 (260)
T ss_pred             ----cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cc-CCCCCC
Confidence                56899999999999999999999999999999 66 799996

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=4.7e-51  Score=401.01  Aligned_cols=259  Identities=20%  Similarity=0.286  Sum_probs=221.7

Q ss_pred             cccCCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhh
Q 012534           60 AAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ  139 (461)
Q Consensus        60 ~~~~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~  139 (461)
                      +.+.+.+.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....
T Consensus         3 ~~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~   81 (265)
T PLN02888          3 TQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFK   81 (265)
T ss_pred             cccCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhcc
Confidence            33445677888754689999999999999999999999999999999999999999999998 89999999998643110


Q ss_pred             hcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCce
Q 012534          140 KDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTL  219 (461)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~  219 (461)
                      ..                              .......++..|..+||||||+|||+|+|||++|+++|||||++++++
T Consensus        82 ~~------------------------------~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~  131 (265)
T PLN02888         82 GD------------------------------VKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAK  131 (265)
T ss_pred             ch------------------------------hhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCE
Confidence            00                              000113455678899999999999999999999999999999999999


Q ss_pred             EeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHH
Q 012534          220 LAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD  299 (461)
Q Consensus       220 f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~  299 (461)
                      |++||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+               
T Consensus       132 f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a---------------  194 (265)
T PLN02888        132 FIDTHAKFGIFPSWGLSQKLSRIIGAN-RAREVSLTAMPLT-AETAERWGLVNHVVEESELLKKA---------------  194 (265)
T ss_pred             ecCccccccCCCCccHhhHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCccEeeChHHHHHHH---------------
Confidence            999999999999999999999999997 9999999999999 99999999999999987765322               


Q ss_pred             HHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 012534          300 IVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFS  379 (461)
Q Consensus       300 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~  379 (461)
                                                                           .++|+    +|++.+|.+++.+|++++
T Consensus       195 -----------------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~  217 (265)
T PLN02888        195 -----------------------------------------------------REVAE----AIIKNNQGMVLRYKSVIN  217 (265)
T ss_pred             -----------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHH
Confidence                                                                 14444    799999999999999999


Q ss_pred             HHhhhcCCCccccCCHHHHHHHHHHHHHhhc--CCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          380 KVASAHGKTDNELSKLSGVMKYEYRVALRSS--LRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~--~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      ...         ..++.+.+..|...+..++  .++|++||+++|+ +| |+|+-.+
T Consensus       218 ~~~---------~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~-ek-r~~~~~~  263 (265)
T PLN02888        218 DGL---------KLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFI-AG-RSSKKPS  263 (265)
T ss_pred             Hhh---------cCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-hc-CCCCCCC
Confidence            765         4678999999988777764  5999999999999 67 6776544

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=5.5e-51  Score=402.63  Aligned_cols=253  Identities=25%  Similarity=0.312  Sum_probs=216.7

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .|+.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........ 
T Consensus         6 ~~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~-   82 (275)
T PRK09120          6 RWDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDAQP-   82 (275)
T ss_pred             ccccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccccch-
Confidence            367788887 789999999999999999999999999999999999999999999998 89999999998753211000 


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                           . ..........+.++..|..+||||||+|||+|+|||++|+++||+||++++++|++|
T Consensus        83 ---------------------~-~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~p  140 (275)
T PRK09120         83 ---------------------E-ILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLS  140 (275)
T ss_pred             ---------------------h-HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCC
Confidence                                 0 001112223345677899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++|||+++||++++.+.+.                  
T Consensus       141 e~~~Gl~p~~g~~~~l~~~iG~~-~a~~llltg~~~~-A~eA~~~Glv~~vv~~~~l~~~a~------------------  200 (275)
T PRK09120        141 EINWGIPPGGGVSKAMADTVGHR-DALYYIMTGETFT-GRKAAEMGLVNESVPLAQLRARTR------------------  200 (275)
T ss_pred             ccccCCCCCcchHHHHHHHcCHH-HHHHHHhcCCccC-HHHHHHcCCcceecCHHHHHHHHH------------------
Confidence            99999999999999999999998 9999999999999 999999999999999888764222                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|+++||.+++.+|++++... 
T Consensus       201 --------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~-  225 (275)
T PRK09120        201 --------------------------------------------------ELAA----KLLEKNPVVLRAAKDGFKRVR-  225 (275)
T ss_pred             --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHH-
Confidence                                                              4444    799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHH--HHhhcCCC-cHHHHHHhhhc
Q 012534          384 AHGKTDNELSKLSGVMKYEYRV--ALRSSLRS-DFAEGVRAVLV  424 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~--~~~~~~s~-d~~egv~afl~  424 (461)
                              ..++.+.++.|...  ....+.++ |++||+++|++
T Consensus       226 --------~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~  261 (275)
T PRK09120        226 --------ELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLD  261 (275)
T ss_pred             --------hCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence                    56789998887644  44568888 89999999995

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-51  Score=404.37  Aligned_cols=267  Identities=25%  Similarity=0.368  Sum_probs=224.9

Q ss_pred             CCccceEEEEecC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           63 GAEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        63 ~~~~~i~~~~~~~-~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      +.|+.+.+++ ++ +|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus         2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~   79 (272)
T PRK06210          2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSD   79 (272)
T ss_pred             CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCccc
Confidence            3467788887 67 8999999999999999999999999999999999999999999998 8999999999875421100


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHH-HHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEM-IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL  220 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f  220 (461)
                      ....                  ...... .......+.++..|.++||||||+|||+|+|||++|+++||+||++++++|
T Consensus        80 ~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f  141 (272)
T PRK06210         80 GRRD------------------TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKF  141 (272)
T ss_pred             cccc------------------ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEE
Confidence            0000                  000000 001111234567899999999999999999999999999999999999999


Q ss_pred             eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534          221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI  300 (461)
Q Consensus       221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~  300 (461)
                      ++||+++|++|++|++++|++++|.. ++++|+|||+.++ |+||+++||||++||++++.+.+                
T Consensus       142 ~~pe~~~Gl~p~~g~~~~l~~~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a----------------  203 (272)
T PRK06210        142 TTAFARRGLIAEHGISWILPRLVGHA-NALDLLLSARTFY-AEEALRLGLVNRVVPPDELMERT----------------  203 (272)
T ss_pred             echHHhcCCCCCCchhhhhHhhhCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHH----------------
Confidence            99999999999999999999999998 9999999999999 99999999999999987765322                


Q ss_pred             HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Q 012534          301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFS  379 (461)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~-sp~al~~tk~~l~  379 (461)
                                                                          .+||+    +|+++ +|.++..+|++++
T Consensus       204 ----------------------------------------------------~~~a~----~i~~~~~p~a~~~~K~~l~  227 (272)
T PRK06210        204 ----------------------------------------------------LAYAE----DLARNVSPASMAVIKRQLY  227 (272)
T ss_pred             ----------------------------------------------------HHHHH----HHHhcCCHHHHHHHHHHHH
Confidence                                                                24554    68875 9999999999999


Q ss_pred             HHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          380 KVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      ...         ..++.+.++.|...+...+.++|++||+++|+ +| |+|.|..
T Consensus       228 ~~~---------~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~~~  271 (272)
T PRK06210        228 EDA---------FQTLAEATARANREMHESLQRPDFIEGVASFL-EK-RPPRFPG  271 (272)
T ss_pred             hcc---------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCCC
Confidence            765         56899999999999999999999999999999 67 8999974

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7e-51  Score=402.23  Aligned_cols=266  Identities=22%  Similarity=0.292  Sum_probs=220.9

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.+.++..+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.........
T Consensus         7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~~~   85 (276)
T PRK05864          7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVEGL   85 (276)
T ss_pred             CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhcccccccc
Confidence            3566777764689999999999999999999999999999999999999999999997 899999999986421100000


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                      .                    ........+..+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++|
T Consensus        86 ~--------------------~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~p  145 (276)
T PRK05864         86 T--------------------RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAA  145 (276)
T ss_pred             c--------------------chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCc
Confidence            0                    00001112333455677889999999999999999999999999999999999999999


Q ss_pred             ccccCCCC-CchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          224 ENGIGLFP-DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       224 e~~lGl~P-~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      |+++|++| ++|++++|++++|.. ++++|++||++++ |+||+++||||++||++++.+.+                  
T Consensus       146 e~~~Gl~p~~~g~~~~l~~~vG~~-~A~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a------------------  205 (276)
T PRK05864        146 GINNGLTASELGLSYLLPRAIGSS-RAFEIMLTGRDVD-AEEAERIGLVSRQVPDEQLLDTC------------------  205 (276)
T ss_pred             ccccCCCCCCcchheehHhhhCHH-HHHHHHHcCCccC-HHHHHHcCCcceeeCHHHHHHHH------------------
Confidence            99999997 789999999999997 9999999999999 99999999999999987765422                  


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                        .+||+    +|+..||.+++.+|++++...
T Consensus       206 --------------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~~  231 (276)
T PRK05864        206 --------------------------------------------------YAIAA----RMAGFSRPGIELTKRTLWSGL  231 (276)
T ss_pred             --------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhc
Confidence                                                              24555    799999999999999998754


Q ss_pred             hhcCCCccccC-CHHHHHHHHHHHH-HhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          383 SAHGKTDNELS-KLSGVMKYEYRVA-LRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       383 ~~~~~~~~~~~-~l~~~l~~E~~~~-~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                               .. ++.+.+..|.... ...+.++|++||+++|+ +| |+|+|++.
T Consensus       232 ---------~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~-~k-r~p~~~~~  275 (276)
T PRK05864        232 ---------DAASLEAHMQAEGLGQLFVRLLTANFEEAVAARA-EK-RPPVFTDD  275 (276)
T ss_pred             ---------ccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHh-cc-CCCCCCCC
Confidence                     32 6888888887543 23578999999999999 67 89999864

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=5.7e-51  Score=402.20  Aligned_cols=258  Identities=19%  Similarity=0.235  Sum_probs=219.2

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..... .. 
T Consensus        11 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-   87 (273)
T PRK07396         11 EYEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGY-VD-   87 (273)
T ss_pred             CCcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccc-cc-
Confidence            356688876 789999999999999999999999999999999999999999999998569999999998642100 00 


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                      .                   ..   . ..+ ....++..+.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        88 ~-------------------~~---~-~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~p  143 (273)
T PRK07396         88 D-------------------DG---V-PRL-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQT  143 (273)
T ss_pred             h-------------------hh---h-hhh-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecc
Confidence            0                   00   0 011 1234566789999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+                   
T Consensus       144 e~~~Gl~p~~~~~~~l~~~vG~~-~a~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a-------------------  202 (273)
T PRK07396        144 GPKVGSFDGGYGASYLARIVGQK-KAREIWFLCRQYD-AQEALDMGLVNTVVPLADLEKET-------------------  202 (273)
T ss_pred             cccccccCCchHHHHHHHHhhHH-HHHHHHHhCCCcC-HHHHHHcCCcCeecCHHHHHHHH-------------------
Confidence            99999999999999999999997 9999999999999 99999999999999987765422                   


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                       .+||+    +|++++|.+++.+|++++... 
T Consensus       203 -------------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~-  228 (273)
T PRK07396        203 -------------------------------------------------VRWCR----EMLQNSPMALRCLKAALNADC-  228 (273)
T ss_pred             -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh-
Confidence                                                             24444    799999999999999998754 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                              . .+....+.|...+...+.++|++||+.+|+ +| |+|+|+.
T Consensus       229 --------~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~~~~  268 (273)
T PRK07396        229 --------D-GQAGLQELAGNATMLFYMTEEAQEGRNAFN-EK-RQPDFSK  268 (273)
T ss_pred             --------c-cHHHHHHHHHHHHHHHhcChhHHHHHHHHh-CC-CCCCCCC
Confidence                    2 355556678888888999999999999999 67 8999986

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.4e-51  Score=397.75  Aligned_cols=254  Identities=24%  Similarity=0.392  Sum_probs=220.3

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      |+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......   
T Consensus         3 ~~~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~---   76 (257)
T PRK06495          3 MSQLKLEV-SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVIKGP---   76 (257)
T ss_pred             cceEEEEe-eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhccCCc---
Confidence            55688876 7899999999998 5999999999999999999999999999999998 8999999999875311000   


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                            .....+......++.++.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        77 ----------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe  134 (257)
T PRK06495         77 ----------------------GDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPE  134 (257)
T ss_pred             ----------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChh
Confidence                                  0011123334567778999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++   |++++|++++|.. ++++|+++|+.++ |+||+++||||++||++++.+.+.                   
T Consensus       135 ~~~Gl~---~~~~~l~~~~g~~-~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~~~~~a~-------------------  190 (257)
T PRK06495        135 IDVGLA---GGGKHAMRLFGHS-LTRRMMLTGYRVP-AAELYRRGVIEACLPPEELMPEAM-------------------  190 (257)
T ss_pred             hccCcc---ccHHHHHHHhCHH-HHHHHHHcCCeeC-HHHHHHcCCcceecCHHHHHHHHH-------------------
Confidence            999996   5577899999997 9999999999999 999999999999999877654222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       +|++    +|+++||.+++.+|++++...  
T Consensus       191 -------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~--  215 (257)
T PRK06495        191 -------------------------------------------------EIAR----EIASKSPLATRLAKDALNTIE--  215 (257)
T ss_pred             -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh--
Confidence                                                             4444    799999999999999999865  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                             ..++.++++.|...+...+.++|++||+++|+ +| |+|+|+.
T Consensus       216 -------~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~-~k-r~p~~~~  256 (257)
T PRK06495        216 -------NMSLRDGYRYEQDITAKLAKTEDAKEAQRAFL-EK-RPPVFKG  256 (257)
T ss_pred             -------cCCHHHHHHHHHHHHHHHhcChHHHHHHHHHh-cc-CCCCCCC
Confidence                   56899999999999999999999999999999 67 8999975

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.6e-51  Score=399.48  Aligned_cols=254  Identities=26%  Similarity=0.374  Sum_probs=225.0

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      ..|.+++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......    
T Consensus         5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~----   78 (259)
T PRK06688          5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAPPKP----   78 (259)
T ss_pred             CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccCcch----
Confidence            3477776 789999999999999999999999999999999999999999999998 8999999999875411000    


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                              ..+....+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        79 ------------------------~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~  134 (259)
T PRK06688         79 ------------------------PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA  134 (259)
T ss_pred             ------------------------HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchh
Confidence                                    11344456677889999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+                     
T Consensus       135 ~~G~~p~~g~~~~l~~~~G~~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a---------------------  191 (259)
T PRK06688        135 KLGLCPDAGGSALLPRLIGRA-RAAEMLLLGEPLS-AEEALRIGLVNRVVPAAELDAEA---------------------  191 (259)
T ss_pred             hcCCCCCcchhhHHHHHhhHH-HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHH---------------------
Confidence            999999999999999999997 9999999999999 99999999999999977665322                     


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                     .++|+    +|++.||.+++.+|++++...   
T Consensus       192 -----------------------------------------------~~~a~----~i~~~~~~a~~~~K~~l~~~~---  217 (259)
T PRK06688        192 -----------------------------------------------DAQAA----KLAAGPASALRYTKRAINAAT---  217 (259)
T ss_pred             -----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh---
Confidence                                                           14444    788999999999999999875   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                            ..++++++..|.+.+..++.++|+++|+++|+ +| ++|+|++
T Consensus       218 ------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~-~~-~~p~~~~  258 (259)
T PRK06688        218 ------LTELEEALAREAAGFGRLLRTPDFREGATAFI-EK-RKPDFTG  258 (259)
T ss_pred             ------hCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCC
Confidence                  45899999999999999999999999999999 67 7999975

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-50  Score=404.59  Aligned_cols=275  Identities=23%  Similarity=0.322  Sum_probs=219.2

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (296)
T PRK08260          3 YETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAPR   80 (296)
T ss_pred             cceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhcccccccc
Confidence            45678876 789999999999999999999999999999999999999999999998 8999999999875311000000


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                      ....        ........  .....+......++..|..+||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        81 ~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe  150 (296)
T PRK08260         81 TPVE--------ADEEDRAD--PSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVF  150 (296)
T ss_pred             cccc--------cccccccc--hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecch
Confidence            0000        00000000  0001122223456778999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                   
T Consensus       151 ~~~Gl~p~~g~~~~l~r~vG~~-~A~~llltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-------------------  209 (296)
T PRK08260        151 GRRGIVPEAASSWFLPRLVGLQ-TALEWVYSGRVFD-AQEALDGGLVRSVHPPDELLPAAR-------------------  209 (296)
T ss_pred             hhcCcCCCcchhhhHHHhhCHH-HHHHHHHcCCccC-HHHHHHCCCceeecCHHHHHHHHH-------------------
Confidence            9999999999999999999998 9999999999999 999999999999999877653221                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSKVAS  383 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~-sp~al~~tk~~l~~~~~  383 (461)
                                                                       ++|+    +|+++ +|.+++.+|++++....
T Consensus       210 -------------------------------------------------~~a~----~i~~~~~~~a~~~~K~~l~~~~~  236 (296)
T PRK08260        210 -------------------------------------------------ALAR----EIADNTSPVSVALTRQMMWRMAG  236 (296)
T ss_pred             -------------------------------------------------HHHH----HHHhcCChHHHHHHHHHHHhccc
Confidence                                                             4444    78885 99999999999987530


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                             ....+. ....|...+..++.++|++||+++|+ +| |+|.|+++
T Consensus       237 -------~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~f~~~  278 (296)
T PRK08260        237 -------ADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFL-EK-RPAVFPGK  278 (296)
T ss_pred             -------CCCcHH-HHHHHHHHHHHHccChhHHHHHHHHh-cC-CCCCCCCC
Confidence                   012333 34568888888899999999999999 67 89999986

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-50  Score=395.28  Aligned_cols=260  Identities=22%  Similarity=0.299  Sum_probs=220.8

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... .....
T Consensus         2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~-~~~~~   78 (262)
T PRK07509          2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSP-GNAVK   78 (262)
T ss_pred             CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhccc-chhhh
Confidence            35677887 789999999999999999999999999999999999999999999998 8999999999875321 00000


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                         ...............++..+.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        79 -------------------~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe  139 (262)
T PRK07509         79 -------------------LLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIME  139 (262)
T ss_pred             -------------------hHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecch
Confidence                               0000011111223345667889999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++|++  +.+  ++                  
T Consensus       140 ~~~Gl~p~~g~~~~l~~~~g~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~--~~~--~a------------------  195 (262)
T PRK07509        140 AKWGLVPDMAGTVSLRGLVRKD-VARELTYTARVFS-AEEALELGLVTHVSDD--PLA--AA------------------  195 (262)
T ss_pred             hccCCCCCchHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHcCChhhhhch--HHH--HH------------------
Confidence            9999999999999999999998 9999999999999 9999999999999953  321  11                  


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                      .+||+    +|++++|.+++.+|++++...  
T Consensus       196 ------------------------------------------------~~~a~----~l~~~~~~~~~~~K~~l~~~~--  221 (262)
T PRK07509        196 ------------------------------------------------LALAR----EIAQRSPDAIAAAKRLINRSW--  221 (262)
T ss_pred             ------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh--
Confidence                                                            24555    799999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN  433 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~  433 (461)
                             ..++.+++..|.+.+..++.++|++||+++|+ +| |+|.|+
T Consensus       222 -------~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~-ek-r~p~~~  261 (262)
T PRK07509        222 -------TASVRALLARESVEQIRLLLGKNQKIAVKAQM-KK-RAPKFL  261 (262)
T ss_pred             -------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence                   46789999999999999999999999999999 67 799996

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-50  Score=391.56  Aligned_cols=247  Identities=27%  Similarity=0.429  Sum_probs=215.6

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....        
T Consensus         2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~--------   71 (248)
T PRK06072          2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDFA--------   71 (248)
T ss_pred             eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhhH--------
Confidence            45665 789999999999999999999999999999999999999999999998 89999999998753110        


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                            ..+...++.++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus        72 ----------------------~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~  129 (248)
T PRK06072         72 ----------------------IDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRL  129 (248)
T ss_pred             ----------------------HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhc
Confidence                                  0122334556778999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|++|+++++++++| . +++++++||+.|+ |+||+++||||.+   +++.+  ++                     
T Consensus       130 Gl~p~~g~~~~l~~~~g-~-~a~~lll~g~~~~-a~eA~~~Glv~~~---~~~~~--~a---------------------  180 (248)
T PRK06072        130 GLASDTGVAYFLLKLTG-Q-RFYEILVLGGEFT-AEEAERWGLLKIS---EDPLS--DA---------------------  180 (248)
T ss_pred             CcCCCchHHHHHHHHhh-H-HHHHHHHhCCccC-HHHHHHCCCcccc---chHHH--HH---------------------
Confidence            99999999999999999 4 8999999999999 9999999999953   23322  11                     


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                   .++|+    +|++.||.+++.+|++++...     
T Consensus       181 ---------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~-----  206 (248)
T PRK06072        181 ---------------------------------------------EEMAN----RISNGPFQSYIAAKRMINLVL-----  206 (248)
T ss_pred             ---------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh-----
Confidence                                                         14444    899999999999999999865     


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                          ..++++.++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       207 ----~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~~  248 (248)
T PRK06072        207 ----YNDLEEFLEYESAIQGYLGKTEDFKEGISSFK-EK-REPKFKGI  248 (248)
T ss_pred             ----hcCHHHHHHHHHHHHHHHhCChhHHHHHHHHh-cC-CCCCCCCC
Confidence                45799999999999999999999999999999 67 89999863

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-50  Score=393.23  Aligned_cols=252  Identities=24%  Similarity=0.355  Sum_probs=219.7

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.+.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........   
T Consensus         2 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~---   76 (255)
T PRK07260          2 EHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDEDD---   76 (255)
T ss_pred             CceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccccc---
Confidence            4577776 789999999999999999999999999999999999999999999998 89999999999764211100   


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                          ......+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        77 --------------------~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~  136 (255)
T PRK07260         77 --------------------VQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV  136 (255)
T ss_pred             --------------------hhhHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHh
Confidence                                001112333445677789999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||++++ |+||+++||||++||++++.+.+.                    
T Consensus       137 ~~Gl~p~~g~~~~l~~~vg~~-~a~~l~l~g~~~s-a~eA~~~Glv~~vv~~~~l~~~a~--------------------  194 (255)
T PRK07260        137 GVGLAPDAGGLFLLTRAIGLN-RATHLAMTGEALT-AEKALEYGFVYRVAESEKLEKTCE--------------------  194 (255)
T ss_pred             hcCCCCCCchhhhhHHhhCHH-HHHHHHHhCCccC-HHHHHHcCCcceecCHhHHHHHHH--------------------
Confidence            999999999999999999998 9999999999999 999999999999999877653222                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      ++++    +|++.+|.+++.+|+.++...   
T Consensus       195 ------------------------------------------------~~a~----~la~~~~~a~~~~K~~~~~~~---  219 (255)
T PRK07260        195 ------------------------------------------------QLLK----KLRRGSSNSYAAIKSLVWESF---  219 (255)
T ss_pred             ------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHHh---
Confidence                                                            3343    799999999999999999875   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                            ..++++.+..|...+..++.++|++||+++|+ +|
T Consensus       220 ------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k  253 (255)
T PRK07260        220 ------FKGWEDYAKLELALQESLAFKEDFKEGVRAFS-ER  253 (255)
T ss_pred             ------hcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hc
Confidence                  46799999999999999999999999999999 56

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-50  Score=393.67  Aligned_cols=247  Identities=18%  Similarity=0.192  Sum_probs=211.3

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ..  .   
T Consensus         5 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~-~~--~---   76 (254)
T PRK08259          5 VRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGR-GN--R---   76 (254)
T ss_pred             EEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhccc-ch--h---
Confidence            67776 789999999999999999999999999999999999999999999997 8999999999875311 00  0   


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                        ...  ....   .+...+.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus        77 ------------------~~~--~~~~---~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~  133 (254)
T PRK08259         77 ------------------LHP--SGDG---PMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRW  133 (254)
T ss_pred             ------------------hhh--hhcc---hhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCccccc
Confidence                              000  0000   11122347999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|++|++++|++++|.. ++++|+++|+.|+ |+||+++||||++||++++.+.+.                      
T Consensus       134 Gl~p~~g~~~~l~~~iG~~-~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~----------------------  189 (254)
T PRK08259        134 GVPLIDGGTVRLPRLIGHS-RAMDLILTGRPVD-ADEALAIGLANRVVPKGQARAAAE----------------------  189 (254)
T ss_pred             CCCCCccHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCCEeeChhHHHHHHH----------------------
Confidence            9999999999999999997 9999999999999 999999999999999887764222                      


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                    +||+    +|++.||.+++.+|++++...     
T Consensus       190 ----------------------------------------------~~a~----~la~~~~~a~~~~K~~~~~~~-----  214 (254)
T PRK08259        190 ----------------------------------------------ELAA----ELAAFPQTCLRADRLSALEQW-----  214 (254)
T ss_pred             ----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh-----
Confidence                                                          4444    799999999999999999765     


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNP  430 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P  430 (461)
                          ..++.+.++.|...+...+. +|++||+++|+ +|+++|
T Consensus       215 ----~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~-~~~~~~  251 (254)
T PRK08259        215 ----GLPEEAALANEFAHGLAVLA-AEALEGAARFA-AGAGRH  251 (254)
T ss_pred             ----cCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHH-hhhccc
Confidence                46799999999988777777 99999999999 555666

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=4.8e-50  Score=390.89  Aligned_cols=246  Identities=19%  Similarity=0.267  Sum_probs=211.1

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      |.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....         
T Consensus         3 v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~---------   70 (251)
T TIGR03189         3 VWLER-DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMPDQ---------   70 (251)
T ss_pred             EEEEe-eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCchh---------
Confidence            55666 6889999999997 5999999999999999999999999999999998 7999999999752100         


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                           ...++.....++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus        71 ---------------------~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~  129 (251)
T TIGR03189        71 ---------------------CAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVL  129 (251)
T ss_pred             ---------------------HHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhc
Confidence                                 00123344567788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|+ |++++|++++|.. ++++|+|||+.++ |+||+++|||++++|+.+  .  .++                    
T Consensus       130 Gl~p~-~~~~~l~~~vg~~-~a~~l~ltg~~~~-a~eA~~~Glv~~v~~~~~--~--~a~--------------------  182 (251)
T TIGR03189       130 GVFAP-AASCLLPERMGRV-AAEDLLYSGRSID-GAEGARIGLANAVAEDPE--N--AAL--------------------  182 (251)
T ss_pred             CCCCC-chHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCcceecCcHH--H--HHH--------------------
Confidence            99987 4678999999998 9999999999999 999999999999997532  1  111                    


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHH-HHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQW-ADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~-A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                    ++ ++    +|+++||.+++.+|++++...    
T Consensus       183 ----------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~~----  208 (251)
T TIGR03189       183 ----------------------------------------------AWFDE----HPAKLSASSLRFAVRAARLGM----  208 (251)
T ss_pred             ----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh----
Confidence                                                          22 33    799999999999999999765    


Q ss_pred             CCccccCCHHHHH-HHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          387 KTDNELSKLSGVM-KYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       387 ~~~~~~~~l~~~l-~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                           ..++++.+ ..|......++.++|++||+++|+ +| |+|.|++
T Consensus       209 -----~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~~~~  250 (251)
T TIGR03189       209 -----NERVKAKIAEVEALYLEELMATHDAVEGLNAFL-EK-RPALWED  250 (251)
T ss_pred             -----cccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH-hc-CCCCCCC
Confidence                 45777766 477788888999999999999999 67 8999975

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PLN02921 naphthoate synthase

Probab=100.00  E-value=5.8e-50  Score=402.78  Aligned_cols=259  Identities=19%  Similarity=0.222  Sum_probs=217.9

Q ss_pred             CccceEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           64 AEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~-~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      .++.|.+++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....   .
T Consensus        63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~---~  139 (327)
T PLN02921         63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG---Y  139 (327)
T ss_pred             CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc---c
Confidence            5677888863 58999999999999999999999999999999999999999999999867999999999764210   0


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                      ..                     ..... .+ ....++..|.++||||||+|||+|+|||++|+++||||||+++++|++
T Consensus       140 ~~---------------------~~~~~-~~-~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~  196 (327)
T PLN02921        140 VG---------------------PDDAG-RL-NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQ  196 (327)
T ss_pred             cc---------------------hhHHH-HH-HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeC
Confidence            00                     00000 11 123456788999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|+++|+.++ |+||+++||||++||.+++.+.+                  
T Consensus       197 pe~~~Gl~p~~gg~~~L~rliG~~-~A~ellltG~~~~-A~eA~~~GLV~~vv~~~~l~~~a------------------  256 (327)
T PLN02921        197 TGPKVGSFDAGYGSSIMARLVGQK-KAREMWFLARFYT-ASEALKMGLVNTVVPLDELEGET------------------  256 (327)
T ss_pred             cccccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHCCCceEEeCHHHHHHHH------------------
Confidence            999999999999999999999998 9999999999999 99999999999999987776422                  


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                        .+||+    +|+++||.+++.+|++++...
T Consensus       257 --------------------------------------------------~~~a~----~la~~~p~al~~~K~~l~~~~  282 (327)
T PLN02921        257 --------------------------------------------------VKWCR----EILRNSPTAIRVLKSALNAAD  282 (327)
T ss_pred             --------------------------------------------------HHHHH----HHHccCHHHHHHHHHHHHHhh
Confidence                                                              24555    799999999999999998764


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                               . ........|...+..++.++|++||+++|+ +| |+|+|+.
T Consensus       283 ---------~-~~~~~~~~~~~~~~~~~~s~d~~egi~Af~-ek-r~p~f~~  322 (327)
T PLN02921        283 ---------D-GHAGLQELGGNATLLFYGSEEGNEGRTAYL-EG-RAPDFSK  322 (327)
T ss_pred             ---------c-chhHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCCC
Confidence                     2 233333444577777889999999999999 67 8999985

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=8.2e-50  Score=390.82  Aligned_cols=253  Identities=31%  Similarity=0.463  Sum_probs=221.2

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      +..+.++. .++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+||+++.. . ...  
T Consensus         4 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~-~-~~~--   77 (257)
T COG1024           4 YETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLS-P-EDG--   77 (257)
T ss_pred             CCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhc-c-cch--
Confidence            45567776 566999999999999999999999999999999999999999999998 99999999999875 1 000  


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                            .....++...+.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||
T Consensus        78 ----------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe  135 (257)
T COG1024          78 ----------------------NAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPE  135 (257)
T ss_pred             ----------------------hHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcc
Confidence                                  0011366666788999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHhcccCCChHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      +++|++|++|++++|+|++|.. ++++|++||+.++ |+||+++|||+++|+. +++.+.+.                  
T Consensus       136 ~~iGl~Pg~g~~~~l~r~~G~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~l~~~a~------------------  195 (257)
T COG1024         136 VNLGLLPGDGGTQRLPRLLGRG-RAKELLLTGEPIS-AAEALELGLVDEVVPDAEELLERAL------------------  195 (257)
T ss_pred             cccccCCCCcHHHHHHHhcCHH-HHHHHHHcCCcCC-HHHHHHcCCcCeeeCCHHHHHHHHH------------------
Confidence            9999999889999999999998 9999999999999 9999999999999985 45553222                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++++    +++. +|.++..+|+.++... 
T Consensus       196 --------------------------------------------------~~a~----~~a~-~~~a~~~~k~~~~~~~-  219 (257)
T COG1024         196 --------------------------------------------------ELAR----RLAA-PPLALAATKRLVRAAL-  219 (257)
T ss_pred             --------------------------------------------------HHHH----HHcc-CHHHHHHHHHHHHHhh-
Confidence                                                              4444    5555 9999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW  432 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w  432 (461)
                              ...+.+.+..|...+...+.++|++||+++|+ +  |+|.|
T Consensus       220 --------~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~-~--r~p~~  257 (257)
T COG1024         220 --------EADLAEALEAEALAFARLFSSEDFREGVRAFL-E--RKPVF  257 (257)
T ss_pred             --------hccHHHHHHHHHHHHHHHhcChhHHHHHHHHH-c--cCCCC
Confidence                    33499999999999998889999999999999 4  78988

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.8e-50  Score=388.11  Aligned_cols=241  Identities=20%  Similarity=0.316  Sum_probs=212.7

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.++.| ++|+|||||.| ++||+|+|+++...   .       
T Consensus         2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~---~-------   68 (243)
T PRK07854          2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY---A-------   68 (243)
T ss_pred             ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh---H-------
Confidence            45666 689999999999999999999999999999999965 89999999998 89999999985211   0       


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                            ..+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus        69 ----------------------~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~  126 (243)
T PRK07854         69 ----------------------DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKY  126 (243)
T ss_pred             ----------------------HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEecccccc
Confidence                                  0133334567778999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|++|++++|++++|.. ++++|++||+.++ |+||+++|||++|++   +.   ++                     
T Consensus       127 G~~p~~g~~~~l~~~~G~~-~a~~l~ltg~~~~-a~eA~~~Glv~~v~~---~~---~a---------------------  177 (243)
T PRK07854        127 GIALDNWTIRRLSSLVGGG-RARAMLLGAEKLT-AEQALATGMANRIGT---LA---DA---------------------  177 (243)
T ss_pred             ccCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHCCCcccccC---HH---HH---------------------
Confidence            9999999999999999997 9999999999999 999999999999974   21   11                     


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                   .+||+    +|+++||.+++.+|++++..      
T Consensus       178 ---------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~------  202 (243)
T PRK07854        178 ---------------------------------------------QAWAA----EIAGLAPLALQHAKRVLNDD------  202 (243)
T ss_pred             ---------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHcc------
Confidence                                                         25665    79999999999999999863      


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                           ..+++.++.|...+..++.++|+.||+++|+ +| |+|.|++
T Consensus       203 -----~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~  242 (243)
T PRK07854        203 -----GAIEEAWPAHKELFDKAWASQDAIEAQVARI-EK-RPPKFQG  242 (243)
T ss_pred             -----CCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-CC-CCCCCCC
Confidence                 3589999999999999999999999999999 67 8999975

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.3e-50  Score=389.80  Aligned_cols=243  Identities=20%  Similarity=0.266  Sum_probs=212.5

Q ss_pred             ceEEEEecC---cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           67 FVKGNVHPN---GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        67 ~i~~~~~~~---~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .|.++. ++   +|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++.......  
T Consensus         4 ~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~--   79 (251)
T PRK06023          4 HILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAAMGG--   79 (251)
T ss_pred             eEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhccccc--
Confidence            477776 44   5999999999999999999999999999999999999999999997 8999999999875311000  


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                                ..+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        80 --------------------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~p  133 (251)
T PRK06023         80 --------------------------TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTP  133 (251)
T ss_pred             --------------------------hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCc
Confidence                                      002223345677899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. +++++++||+.++ |+||+++|||+++||.+++.+.+.                  
T Consensus       134 e~~~Gl~p~~g~~~~l~~~~g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------  193 (251)
T PRK06023        134 FVDLALVPEAGSSLLAPRLMGHQ-RAFALLALGEGFS-AEAAQEAGLIWKIVDEEAVEAETL------------------  193 (251)
T ss_pred             ccccCCCCCchHHHHHHHHHhHH-HHHHHHHhCCCCC-HHHHHHcCCcceeeCHHHHHHHHH------------------
Confidence            99999999999999999999997 9999999999999 999999999999999877654221                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|++.||.+++.+|++++... 
T Consensus       194 --------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~-  218 (251)
T PRK06023        194 --------------------------------------------------KAAE----ELAAKPPQALQIARDLMRGPR-  218 (251)
T ss_pred             --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhch-
Confidence                                                              4444    799999999999999998643 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhh
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL  423 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl  423 (461)
                               ..+.+.++.|.+.+...+.++|++||+++|+
T Consensus       219 ---------~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~  249 (251)
T PRK06023        219 ---------EDILARIDEEAKHFAARLKSAEARAAFEAFM  249 (251)
T ss_pred             ---------hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence                     3588899999998889999999999999999

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.3e-50  Score=389.82  Aligned_cols=244  Identities=22%  Similarity=0.324  Sum_probs=214.3

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......     
T Consensus         4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~-----   76 (249)
T PRK05870          4 PVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAPGRP-----   76 (249)
T ss_pred             cEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhcccccc-----
Confidence            367776 789999999999999999999999999999999999999999999998 8999999999875421000     


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                            ....+...+..+..+.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        77 ----------------------~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~  134 (249)
T PRK05870         77 ----------------------AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQK  134 (249)
T ss_pred             ----------------------hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccc
Confidence                                  0113334455667899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++|  +++.+.+                      
T Consensus       135 ~G~~p~~g~~~~l~~~~G~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv--~~l~~~a----------------------  188 (249)
T PRK05870        135 LGLHPGGGATWMLQRAVGPQ-VARAALLFGMRFD-AEAAVRHGLALMVA--DDPVAAA----------------------  188 (249)
T ss_pred             cCcCCCCcceeeHHhhhCHH-HHHHHHHhCCccC-HHHHHHcCCHHHHH--hhHHHHH----------------------
Confidence            99999999999999999998 9999999999999 99999999999999  4554321                      


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                    .+||+    +|+++||.+++.+|++++...    
T Consensus       189 ----------------------------------------------~~~a~----~la~~~~~a~~~~K~~~~~~~----  214 (249)
T PRK05870        189 ----------------------------------------------LELAA----GPAAAPRELVLATKASMRATA----  214 (249)
T ss_pred             ----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhcc----
Confidence                                                          14444    799999999999999999765    


Q ss_pred             CCcccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534          387 KTDNEL-SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV  424 (461)
Q Consensus       387 ~~~~~~-~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~  424 (461)
                           . .+++++++.|...+...+.++|++||+++|++
T Consensus       215 -----~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~  248 (249)
T PRK05870        215 -----SLAQHAAAVEFELGPQAASVQSPEFAARLAAAQR  248 (249)
T ss_pred             -----ccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhc
Confidence                 4 57999999999999999999999999999993

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.9e-50  Score=398.71  Aligned_cols=271  Identities=18%  Similarity=0.168  Sum_probs=215.5

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHH-HhhhcC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA-EIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~-~~~~~~  142 (461)
                      .++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+||++... ......
T Consensus         3 ~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~   80 (298)
T PRK12478          3 DFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMM   80 (298)
T ss_pred             CceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhcc
Confidence            356688876 789999999999999999999999999999999999999999999998 89999999986321 000000


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                      ......             ..................+..|.++||||||+|||+|+|||++|+++||+||++++++|++
T Consensus        81 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~  147 (298)
T PRK12478         81 TDGRWD-------------PGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGT  147 (298)
T ss_pred             cccccC-------------chhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEec
Confidence            000000             0000000000000112345568899999999999999999999999999999999999999


Q ss_pred             ccccc-CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          223 PENGI-GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       223 pe~~l-Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      ||+++ |++|  |+++.  +.+|.. ++++|++||+.|+ |+||+++||||++||++++.+.+                 
T Consensus       148 pe~~l~G~~~--~~~~~--~~vG~~-~A~~llltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a-----------------  204 (298)
T PRK12478        148 PYSRMWGAYL--TGMWL--YRLSLA-KVKWHSLTGRPLT-GVQAAEAELINEAVPFERLEARV-----------------  204 (298)
T ss_pred             cccccccCCc--hhHHH--HHhhHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHH-----------------
Confidence            99997 8875  33332  458997 9999999999999 99999999999999988876422                 


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                         .+||+    +|+.+||.+++.+|++++..
T Consensus       205 ---------------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~  229 (298)
T PRK12478        205 ---------------------------------------------------AEVAT----ELARIPLSQLQAQKLIVNQA  229 (298)
T ss_pred             ---------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHH
Confidence                                                               24555    79999999999999999986


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHH--------HHHHhhhcCCCCCCCCCCCCc
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFA--------EGVRAVLVDKDQNPKWNPASL  437 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~--------egv~afl~~K~r~P~w~~~~~  437 (461)
                      .        ...++.+.+..|...+..++.++|++        ||++||+ +| |+|+|+.-+.
T Consensus       230 ~--------~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~~  283 (298)
T PRK12478        230 Y--------ENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAV-ER-RDGPFGDYSQ  283 (298)
T ss_pred             H--------HhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH-Hh-cCCcccccCc
Confidence            5        12469999999999999999999997        5999999 77 8999998665

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-49  Score=386.96  Aligned_cols=245  Identities=19%  Similarity=0.264  Sum_probs=210.5

Q ss_pred             EEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCC
Q 012534           70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK  149 (461)
Q Consensus        70 ~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (461)
                      +..++++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......         
T Consensus         5 ~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~---------   73 (249)
T PRK07938          5 STTPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQATPGF---------   73 (249)
T ss_pred             ecccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhccch---------
Confidence            334478999999999985 999999999999999999999999999999998 899999999986431000         


Q ss_pred             CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCC
Q 012534          150 VPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL  229 (461)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl  229 (461)
                                       ............++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+
T Consensus        74 -----------------~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~  136 (249)
T PRK07938         74 -----------------TALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGA  136 (249)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecC
Confidence                             001112233345677899999999999999999999999999999999999999999999998


Q ss_pred             CCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcC
Q 012534          230 FPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS  309 (461)
Q Consensus       230 ~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~  309 (461)
                      +   |++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                        
T Consensus       137 ~---g~~~~l~~~vg~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------  187 (249)
T PRK07938        137 L---GAATHLQRLVPQH-LMRALFFTAATIT-AAELHHFGSVEEVVPRDQLDEAAL------------------------  187 (249)
T ss_pred             c---hhHHHHHHhcCHH-HHHHHHHhCCcCC-HHHHHHCCCccEEeCHHHHHHHHH------------------------
Confidence            5   5677899999997 9999999999999 999999999999999877654222                        


Q ss_pred             CCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCc
Q 012534          310 DPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTD  389 (461)
Q Consensus       310 ~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~  389 (461)
                                                                  +||+    +|+.+||.+++.+|++++...       
T Consensus       188 --------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-------  212 (249)
T PRK07938        188 --------------------------------------------EVAR----KIAAKDTRVIRAAKEALNGID-------  212 (249)
T ss_pred             --------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhc-------
Confidence                                                        4444    799999999999999999765       


Q ss_pred             cccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCC
Q 012534          390 NELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNP  430 (461)
Q Consensus       390 ~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P  430 (461)
                        ..++.+.++.|.......+.++|++||+++|+ +| |+|
T Consensus       213 --~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~-ek-r~p  249 (249)
T PRK07938        213 --PQDVERSYRWEQGFTFELNLAGVSDEHRDAFV-EK-RKA  249 (249)
T ss_pred             --cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHH-hc-CCC
Confidence              46789999999999999999999999999999 67 666

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.3e-49  Score=386.33  Aligned_cols=255  Identities=23%  Similarity=0.339  Sum_probs=219.2

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      +..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus         5 ~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~-~-~~   80 (260)
T PRK07827          5 DTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGGG-D-PY   80 (260)
T ss_pred             CcceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhccc-C-ch
Confidence            34577776 789999999999999999999999999999999999999999999998 89999999998753100 0 00


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                            .....++..+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        81 ----------------------~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe  138 (260)
T PRK07827         81 ----------------------DAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTE  138 (260)
T ss_pred             ----------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcc
Confidence                                  0011234445667888999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|+++++++++| . ++++|+++|+.++ |+||+++|||+++++  ++.+                      
T Consensus       139 ~~~Gl~p~~g~~~~l~~l~~-~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~--~l~~----------------------  191 (260)
T PRK07827        139 ARIGVAPAIISLTLLPRLSP-R-AAARYYLTGEKFG-AAEAARIGLVTAAAD--DVDA----------------------  191 (260)
T ss_pred             cccCCCCCcccchhHHhhhH-H-HHHHHHHhCCccC-HHHHHHcCCcccchH--HHHH----------------------
Confidence            99999999999999998854 5 8999999999999 999999999999974  3432                      


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                        .+.+++++|++.||.+++.+|++++...  
T Consensus       192 --------------------------------------------------~a~~~a~~la~~~~~a~~~~K~~l~~~~--  219 (260)
T PRK07827        192 --------------------------------------------------AVAALLADLRRGSPQGLAESKALTTAAV--  219 (260)
T ss_pred             --------------------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHhhh--
Confidence                                                              2333334799999999999999999875  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN  433 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~  433 (461)
                             ...+.+.++.|...+..++.++|+++|+++|+ +| |+|+|+
T Consensus       220 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~-~k-r~p~~~  259 (260)
T PRK07827        220 -------LAGFDRDAEELTEESARLFVSDEAREGMTAFL-QK-RPPRWA  259 (260)
T ss_pred             -------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence                   56799999999999999999999999999999 67 789996

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=4.1e-49  Score=389.64  Aligned_cols=253  Identities=19%  Similarity=0.237  Sum_probs=216.6

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCC-CccccCCChhhHHHHhhhc
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP-RAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~-~~FcaG~Dl~~~~~~~~~~  141 (461)
                      .+.+.|.++..+++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+ ++||+|+|++++....  .
T Consensus         8 ~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~--~   84 (278)
T PLN03214          8 GATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPK--T   84 (278)
T ss_pred             CCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccc--c
Confidence            345678887645899999999985 69999999999999999999999999999999873 6999999999874210  0


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                       .                      ......++.....++..|.++||||||+|||+|+|||++|+++|||||++++++|+
T Consensus        85 -~----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~  141 (278)
T PLN03214         85 -S----------------------AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMG  141 (278)
T ss_pred             -c----------------------hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEec
Confidence             0                      00011233333456778999999999999999999999999999999999999999


Q ss_pred             ccccccCC-CCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534          222 MPENGIGL-FPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI  300 (461)
Q Consensus       222 ~pe~~lGl-~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~  300 (461)
                      +||+++|+ +|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||.+++.+.+.               
T Consensus       142 ~pe~~lGl~~p~~~~~~~l~~~~G~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------  204 (278)
T PLN03214        142 LNEVALGIPVPKFWARLFMGRVIDRK-VAESLLLRGRLVR-PAEAKQLGLIDEVVPAAALMEAAA---------------  204 (278)
T ss_pred             CcHHHhCCCCCChhHHHHHHHhcCHH-HHHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHH---------------
Confidence            99999999 59999999999999998 9999999999999 999999999999999877653221               


Q ss_pred             HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534          301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK  380 (461)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~  380 (461)
                                                                           +|++    +|++.+|.+++.+|++++.
T Consensus       205 -----------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~  227 (278)
T PLN03214        205 -----------------------------------------------------SAME----RALKLPSAARAATKALLRE  227 (278)
T ss_pred             -----------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHh
Confidence                                                                 4444    7999999999999999998


Q ss_pred             HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534          381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV  424 (461)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~  424 (461)
                      ..         ..+++++++.|.+.+...+.++|++||+++|++
T Consensus       228 ~~---------~~~l~~~~~~e~~~~~~~~~s~d~~egi~afle  262 (278)
T PLN03214        228 EF---------SAAWEAYYEEEAKGGWKMLSEPSIIKALGGVME  262 (278)
T ss_pred             hH---------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            75         457899999999999999999999999999994

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.2e-48  Score=382.13  Aligned_cols=253  Identities=16%  Similarity=0.199  Sum_probs=215.0

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .|+.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.  ++|+|||+|.| ++||+|+|++++........ 
T Consensus         2 ~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~--~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~-   76 (255)
T PRK07112          2 DYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEH--AATIVVLEGLP-EVFCFGADFSAIAEKPDAGR-   76 (255)
T ss_pred             CCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhc--CceEEEEEcCC-CCcccCcCHHHHhhccccch-
Confidence            356688887 78999999999999999999999999999999983  59999999997 89999999998753111000 


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                              .........+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        77 ------------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~p  132 (255)
T PRK07112         77 ------------------------ADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLS  132 (255)
T ss_pred             ------------------------hhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCc
Confidence                                    00001222345777899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++| +.+|++++|.. ++++|+++|+.++ |+||+++||||++||+++..  +                   
T Consensus       133 e~~~Gl~p~~~-~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~--~-------------------  188 (255)
T PRK07112        133 ELLFGLIPACV-LPFLIRRIGTQ-KAHYMTLMTQPVT-AQQAFSWGLVDAYGANSDTL--L-------------------  188 (255)
T ss_pred             hhhhccCcchh-hHHHHHHhCHH-HHHHHHHhCCccc-HHHHHHcCCCceecCcHHHH--H-------------------
Confidence            99999999865 46799999998 9999999999999 99999999999999864421  0                   


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                       .++++    +|++.+|.+++.+|++++... 
T Consensus       189 -------------------------------------------------~~~a~----~l~~~~p~a~~~~K~~~~~~~-  214 (255)
T PRK07112        189 -------------------------------------------------RKHLL----RLRCLNKAAVARYKSYASTLD-  214 (255)
T ss_pred             -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh-
Confidence                                                             24444    799999999999999998643 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                               ..+.+.++.|......++.++|++||+.+|+ +| |+|.|+.
T Consensus       215 ---------~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~-~k-r~p~~~~  254 (255)
T PRK07112        215 ---------DTVAAARPAALAANIEMFADPENLRKIARYV-ET-GKFPWEA  254 (255)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHcChHHHHHHHHHH-cC-CCCCCCC
Confidence                     3688999999999999999999999999999 67 8999974

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=1.6e-48  Score=389.83  Aligned_cols=269  Identities=20%  Similarity=0.231  Sum_probs=217.2

Q ss_pred             ccceEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCC------CccccCCChhhHHHH
Q 012534           65 EEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFCAGMDIKGVVAE  137 (461)
Q Consensus        65 ~~~i~~~~~-~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~------~~FcaG~Dl~~~~~~  137 (461)
                      ++.|.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+      ++||+|+|++++...
T Consensus        22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            445777752 5789999999999999999999999999999999999999999999973      699999999976321


Q ss_pred             hhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEc-C
Q 012534          138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-E  216 (461)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~-e  216 (461)
                      ........          +.    .........  ......+...+..+||||||+|||+|+|||++|+++|||||++ +
T Consensus       102 ~~~~~~~~----------~~----~~~~~~~~~--~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~  165 (302)
T PRK08321        102 GYQYAEGD----------EA----DTVDPARAG--RLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASRE  165 (302)
T ss_pred             cccccccc----------cc----cchhhhHHH--HHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecC
Confidence            00000000          00    000000000  0112245567889999999999999999999999999999999 6


Q ss_pred             CceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCCh
Q 012534          217 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP  296 (461)
Q Consensus       217 ~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~  296 (461)
                      +++|++||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++|||+++||++++.+.+.           
T Consensus       166 ~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~-----------  232 (302)
T PRK08321        166 HARFKQTDADVGSFDGGYGSAYLARQVGQK-FAREIFFLGRTYS-AEEAHDMGAVNAVVPHAELETEAL-----------  232 (302)
T ss_pred             CCEEECCccccccCCCchHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHCCCceEeeCHHHHHHHHH-----------
Confidence            999999999999999999999999999997 9999999999999 999999999999999877764222           


Q ss_pred             HHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHH
Q 012534          297 HQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQK  376 (461)
Q Consensus       297 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~  376 (461)
                                                                               ++|+    +|++++|.+++.+|+
T Consensus       233 ---------------------------------------------------------~~a~----~la~~~~~a~~~~K~  251 (302)
T PRK08321        233 ---------------------------------------------------------EWAR----EINGKSPTAMRMLKY  251 (302)
T ss_pred             ---------------------------------------------------------HHHH----HHHhCCHHHHHHHHH
Confidence                                                                     4444    799999999999999


Q ss_pred             HHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          377 YFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       377 ~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      +++...         . .+.+....|.+.+..++.++|++||+.+|+ +| |+|.|+..
T Consensus       252 ~l~~~~---------~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~-ek-r~p~~~~~  298 (302)
T PRK08321        252 AFNLTD---------D-GLVGQQLFAGEATRLAYMTDEAQEGRDAFL-EK-RDPDWSDF  298 (302)
T ss_pred             HHHhhh---------c-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCCCC
Confidence            998754         2 344445568888888999999999999999 67 89999763

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=5.2e-49  Score=382.40  Aligned_cols=244  Identities=32%  Similarity=0.488  Sum_probs=221.3

Q ss_pred             EEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCC
Q 012534           70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK  149 (461)
Q Consensus        70 ~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (461)
                      ++. +|+|++|+||||++.|+||.+|+.+|.++|+.++.|+++|+||++|.| ++||+|+|++++.....          
T Consensus         2 ~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~~~----------   69 (245)
T PF00378_consen    2 YEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNSDE----------   69 (245)
T ss_dssp             EEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHHHH----------
T ss_pred             EEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhcccc----------
Confidence            565 799999999999999999999999999999999999999999999986 89999999999987511          


Q ss_pred             CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCC
Q 012534          150 VPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL  229 (461)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl  229 (461)
                                       .....+....+.++.++..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+
T Consensus        70 -----------------~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~  132 (245)
T PF00378_consen   70 -----------------EEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGI  132 (245)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTS
T ss_pred             -----------------ccccccchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCc
Confidence                             123446777788999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcC
Q 012534          230 FPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS  309 (461)
Q Consensus       230 ~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~  309 (461)
                      +|++|++++|++++|.. .++++++||+.++ |+||+++||||+++|++++.+                           
T Consensus       133 ~p~~g~~~~l~r~~g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~---------------------------  183 (245)
T PF00378_consen  133 FPGAGGTFRLPRLIGPS-RARELLLTGEPIS-AEEALELGLVDEVVPDEELDE---------------------------  183 (245)
T ss_dssp             SSTSTHHHHHHHHHHHH-HHHHHHHHTCEEE-HHHHHHTTSSSEEESGGGHHH---------------------------
T ss_pred             ccccccccccceeeecc-cccccccccccch-hHHHHhhcceeEEcCchhhhH---------------------------
Confidence            99999999999999997 9999999999999 999999999999999988764                           


Q ss_pred             CCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCc
Q 012534          310 DPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTD  389 (461)
Q Consensus       310 ~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~  389 (461)
                                                                   .+.+.+++++..+|.+++.+|+.+++..       
T Consensus       184 ---------------------------------------------~a~~~a~~l~~~~~~a~~~~K~~~~~~~-------  211 (245)
T PF00378_consen  184 ---------------------------------------------EALELAKRLAAKPPSALRATKKALNRAL-------  211 (245)
T ss_dssp             ---------------------------------------------HHHHHHHHHHTSCHHHHHHHHHHHHHHH-------
T ss_pred             ---------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Confidence                                                         2333334799999999999999999875       


Q ss_pred             cccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          390 NELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       390 ~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                        ...+.+.++.|.+.+..++.++|++||+++|+ +|
T Consensus       212 --~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~-eK  245 (245)
T PF00378_consen  212 --EQSLEEALEFEQDLFAECFKSEDFQEGIAAFL-EK  245 (245)
T ss_dssp             --HSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT
T ss_pred             --HhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHh-Cc
Confidence              56899999999999999999999999999999 56

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=4.6e-48  Score=376.67  Aligned_cols=244  Identities=17%  Similarity=0.224  Sum_probs=215.8

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......   
T Consensus         4 ~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~---   78 (249)
T PRK07110          4 KVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQTGK---   78 (249)
T ss_pred             CceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccchh---
Confidence            45677776 789999999999999999999999999999999999999999999998 8999999999875321000   


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                                ..+.. ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus        79 --------------------------~~~~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe  131 (249)
T PRK07110         79 --------------------------GTFTE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANF  131 (249)
T ss_pred             --------------------------hhHhh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCch
Confidence                                      01111 456778999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. +++++++||+.++ |+||+++|||+++||++++.+.+.                   
T Consensus       132 ~~~Gl~p~~g~~~~l~~~~g~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------  190 (249)
T PRK07110        132 MKYGFTPGMGATAILPEKLGLA-LGQEMLLTARYYR-GAELKKRGVPFPVLPRAEVLEKAL-------------------  190 (249)
T ss_pred             hccCCCCCchHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCeEEeChHHHHHHHH-------------------
Confidence            9999999999999999999998 9999999999999 999999999999999877654222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++|+    +|+++||.+++.+|++++...  
T Consensus       191 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  215 (249)
T PRK07110        191 -------------------------------------------------ELAR----SLAEKPRHSLVLLKDHLVADR--  215 (249)
T ss_pred             -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh--
Confidence                                                             3443    799999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhh
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL  423 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl  423 (461)
                             ...+.+.++.|...+...+.++|++||++++-
T Consensus       216 -------~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~  247 (249)
T PRK07110        216 -------RRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY  247 (249)
T ss_pred             -------hccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence                   56899999999999999999999999999864

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.6e-48  Score=376.28  Aligned_cols=246  Identities=23%  Similarity=0.303  Sum_probs=211.3

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      +++.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......   
T Consensus         2 ~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~---   76 (258)
T PRK06190          2 TEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDGSA---   76 (258)
T ss_pred             CCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccch---
Confidence            466788887 789999999999999999999999999999999999999999999997 899999999987531000   


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                           .  .   .......++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        77 ---------------------~--~---~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~p  130 (258)
T PRK06190         77 ---------------------Y--G---AQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADT  130 (258)
T ss_pred             ---------------------h--h---HHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECc
Confidence                                 0  0   0122345677899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||++++ |+||+++||||+++|++++.+.+.                  
T Consensus       131 e~~~Gl~p~~g~~~~l~r~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~------------------  190 (258)
T PRK06190        131 HARVGILPGWGLSVRLPQKVGIG-RARRMSLTGDFLD-AADALRAGLVTEVVPHDELLPRAR------------------  190 (258)
T ss_pred             ccccCcCCCccHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCCeEecCHhHHHHHHH------------------
Confidence            99999999999999999999997 9999999999999 999999999999999877654221                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        +||+    +|+++||.+++.+|++++... 
T Consensus       191 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-  215 (258)
T PRK06190        191 --------------------------------------------------RLAA----SIAGNNPAAVRALKASYDDGA-  215 (258)
T ss_pred             --------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh-
Confidence                                                              4444    799999999999999999865 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCC--CcHHHHH-Hhhh
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLR--SDFAEGV-RAVL  423 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s--~d~~egv-~afl  423 (461)
                              ..++.+.++.|...+...+.+  +++...+ .+|+
T Consensus       216 --------~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~  250 (258)
T PRK06190        216 --------AAQTGDALALEAEAARAHNRSVSPDGIAARREAVM  250 (258)
T ss_pred             --------cCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence                    568999999999999988877  4444333 3344

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.3e-46  Score=400.11  Aligned_cols=260  Identities=12%  Similarity=0.030  Sum_probs=221.4

Q ss_pred             ccceEEEEe-cCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEecCCCccccCC
Q 012534           65 EEFVKGNVH-PNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWES-DPRVKCVLIEGSGPRAFCAGM  129 (461)
Q Consensus        65 ~~~i~~~~~-~~~V~~ItLnrP~~~-------------Nal~~~m~~eL~~~l~~~~~-d~~vr~vVltg~G~~~FcaG~  129 (461)
                      |+.+.++.+ +++|++||||||+++             |+||.+|+.+|.++++.++. |+++|+|||||.|+++||+|+
T Consensus       259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~  338 (550)
T PRK08184        259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA  338 (550)
T ss_pred             eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence            455566542 578999999999988             68999999999999999986 799999999999734999999


Q ss_pred             ChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeC-Cccchhh-hHhhh
Q 012534          130 DIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD-GVTMGFG-IGISG  207 (461)
Q Consensus       130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavn-G~a~GgG-~~Lal  207 (461)
                      |++.+.. .  +.                        ............++.+|.++||||||+|| |+|+||| ++|++
T Consensus       339 Dl~~~~~-~--~~------------------------~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLal  391 (550)
T PRK08184        339 DATLLAH-K--DH------------------------WLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELAL  391 (550)
T ss_pred             Chhhhcc-c--ch------------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHH
Confidence            9883211 0  00                        00011223334567789999999999997 9999999 99999


Q ss_pred             cCCeEEEc-------CCceEeccccccCCCCCchHHHHHhcC-CCchHHHHHH--hhcCCCCCcHHHHHHcCccceecCC
Q 012534          208 HGRYRIVT-------EKTLLAMPENGIGLFPDVGFSYIAAKG-PGGGSVGAYL--GMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       208 acD~ria~-------e~a~f~~pe~~lGl~P~~G~~~~L~rl-vG~~~~a~~l--~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      +||+||++       ++++|++||+++|++|++|++++|+++ +|.. +++++  ++||+.|+ |+||+++||||++||+
T Consensus       392 acD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~-~A~~~~l~~tg~~i~-A~eA~~~GLv~~vv~~  469 (550)
T PRK08184        392 AADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEP-DPLAAVRAKIGQPLD-ADAAEELGLVTAAPDD  469 (550)
T ss_pred             HCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChH-HHHHHHHHHhCCcCC-HHHHHHcCCcccccCh
Confidence            99999999       999999999999999999999999988 7998 99997  58999999 9999999999999998


Q ss_pred             CChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHH
Q 012534          278 GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWAD  357 (461)
Q Consensus       278 ~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~  357 (461)
                      +++.+.+.                                                                    ++|+
T Consensus       470 ~~l~~~a~--------------------------------------------------------------------~~a~  481 (550)
T PRK08184        470 IDWEDEVR--------------------------------------------------------------------IALE  481 (550)
T ss_pred             HHHHHHHH--------------------------------------------------------------------HHHH
Confidence            88764222                                                                    4444


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHHHH-HHHHHHHHHhhcCCCcHHH---HHHhhhcCCCCCCCCC
Q 012534          358 EALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE---GVRAVLVDKDQNPKWN  433 (461)
Q Consensus       358 ~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~-l~~E~~~~~~~~~s~d~~e---gv~afl~~K~r~P~w~  433 (461)
                          +|+.+||.+++.+|++++...         ..++++. +..|.+.+..++.++|.+|   |+++|+ +| |+|+|+
T Consensus       482 ----~ia~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~-ek-r~~~f~  546 (550)
T PRK08184        482 ----ERASLSPDALTGMEANLRFAG---------PETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYG-TG-QKAQFD  546 (550)
T ss_pred             ----HHHhCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhc-cC-CCCCCC
Confidence                799999999999999999876         5789999 9999999999999999999   999999 77 899998


Q ss_pred             CCC
Q 012534          434 PAS  436 (461)
Q Consensus       434 ~~~  436 (461)
                      ..+
T Consensus       547 ~~~  549 (550)
T PRK08184        547 WNR  549 (550)
T ss_pred             CCC
Confidence            764

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.7e-46  Score=397.87  Aligned_cols=259  Identities=13%  Similarity=0.045  Sum_probs=220.8

Q ss_pred             ccceEEEE-ecCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEecCCCc-cccC
Q 012534           65 EEFVKGNV-HPNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRA-FCAG  128 (461)
Q Consensus        65 ~~~i~~~~-~~~~V~~ItLnrP~~~-------------Nal~~~m~~eL~~~l~~~~-~d~~vr~vVltg~G~~~-FcaG  128 (461)
                      |.+|.+.. ++++|++||||||+++             |+||.+|+.+|.+++..++ +|+++|+|||||.| ++ ||+|
T Consensus       255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~~F~aG  333 (546)
T TIGR03222       255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DAELVLA  333 (546)
T ss_pred             eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CCceecC
Confidence            45555543 3689999999999999             9999999999999999998 56999999999998 66 9999


Q ss_pred             CChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEe-CCccchhh-hHhh
Q 012534          129 MDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM-DGVTMGFG-IGIS  206 (461)
Q Consensus       129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav-nG~a~GgG-~~La  206 (461)
                      +|++.+..   .+.                        ......+.....++.+|..++|||||+| ||+|+||| ++|+
T Consensus       334 ~Dl~~~~~---~~~------------------------~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLa  386 (546)
T TIGR03222       334 ADALLEAH---KDH------------------------WFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELA  386 (546)
T ss_pred             cCcccccc---ccc------------------------hhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHH
Confidence            99983210   000                        0001122233456778999999999999 89999999 9999


Q ss_pred             hcCCeEEE-------cCCceEeccccccCCCCCchHHHHHhcCC-CchHHH--HHHhhcCCCCCcHHHHHHcCccceecC
Q 012534          207 GHGRYRIV-------TEKTLLAMPENGIGLFPDVGFSYIAAKGP-GGGSVG--AYLGMTGKRISTPSDALFAGLGTDYVP  276 (461)
Q Consensus       207 lacD~ria-------~e~a~f~~pe~~lGl~P~~G~~~~L~rlv-G~~~~a--~~l~LtG~~i~~A~eA~~~GLv~~vv~  276 (461)
                      ++||+||+       +++++|++||+++|++|++|++++|++++ |.. ++  +++++||+.|+ |+||+++|||++++|
T Consensus       387 lacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~-~a~~~~~~ltg~~i~-A~eA~~~Glv~~vv~  464 (546)
T TIGR03222       387 FAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEP-APVAAVRDKIGQALD-AEEAERLGLVTAAPD  464 (546)
T ss_pred             HhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCch-hHHHHHHHHhCCCCC-HHHHHHcCCcccccC
Confidence            99999999       89999999999999999999999999998 987 88  55999999999 999999999999999


Q ss_pred             CCChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHH
Q 012534          277 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWA  356 (461)
Q Consensus       277 ~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A  356 (461)
                      ++++.+.+.                                                                    +||
T Consensus       465 ~~~l~~~a~--------------------------------------------------------------------~~a  476 (546)
T TIGR03222       465 DIDWEDEIR--------------------------------------------------------------------IAL  476 (546)
T ss_pred             chHHHHHHH--------------------------------------------------------------------HHH
Confidence            888764222                                                                    444


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHHHH-HHHHHHHHHhhcCCCcHHH---HHHhhhcCCCCCCCC
Q 012534          357 DEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE---GVRAVLVDKDQNPKW  432 (461)
Q Consensus       357 ~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~-l~~E~~~~~~~~~s~d~~e---gv~afl~~K~r~P~w  432 (461)
                      +    +|+.+||.+++.+|++++...         ..++++. +..|...+..++.++|.+|   |+++|+ +| |+|+|
T Consensus       477 ~----~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~-ek-r~p~f  541 (546)
T TIGR03222       477 E----ERASFSPDALTGLEANLRFAG---------PETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYG-SG-KKAQF  541 (546)
T ss_pred             H----HHHhcCHHHHHHHHHHHhhcC---------CcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHc-cC-CCCCC
Confidence            4    799999999999999999876         5789999 9999999999999999999   999999 77 89999


Q ss_pred             CCCC
Q 012534          433 NPAS  436 (461)
Q Consensus       433 ~~~~  436 (461)
                      +-.+
T Consensus       542 ~~~~  545 (546)
T TIGR03222       542 DMER  545 (546)
T ss_pred             CccC
Confidence            8543

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-46  Score=339.08  Aligned_cols=263  Identities=20%  Similarity=0.270  Sum_probs=231.6

Q ss_pred             ccceEEEE---ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           65 EEFVKGNV---HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        65 ~~~i~~~~---~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      ...+.++.   .+.||.+|-+|||.+.|+|+.-|+++|.++++.+..|+.+|+|+|++.-++.||+|+||++-..+..  
T Consensus        26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~--  103 (291)
T KOG1679|consen   26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSP--  103 (291)
T ss_pred             CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCH--
Confidence            34455553   3568999999999999999999999999999999999999999999988899999999999776432  


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                                               .+...|......++..|.++|.||||+|+|.|+|||++|+++||+|+++++++|+
T Consensus       104 -------------------------~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmG  158 (291)
T KOG1679|consen  104 -------------------------SEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMG  158 (291)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhcccc
Confidence                                     2345588888889999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      ++|++++++|+.||+++|+|++|.. .++||++||+.++ +.||...||||++|...+-.+.+.                
T Consensus       159 LvET~laiiPGaGGtQRLpR~vg~a-laKELIftarvl~-g~eA~~lGlVnhvv~qneegdaa~----------------  220 (291)
T KOG1679|consen  159 LVETKLAIIPGAGGTQRLPRIVGVA-LAKELIFTARVLN-GAEAAKLGLVNHVVEQNEEGDAAY----------------  220 (291)
T ss_pred             ccccceeeecCCCccchhHHHHhHH-HHHhHhhhheecc-chhHHhcchHHHHHhcCccccHHH----------------
Confidence            9999999999999999999999997 9999999999999 899999999999997654222111                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          +-|.+++++|.-+.|.+++++|..++.+
T Consensus       221 ----------------------------------------------------~kal~lA~eilp~gPiavr~aKlAIn~G  248 (291)
T KOG1679|consen  221 ----------------------------------------------------QKALELAREILPQGPIAVRLAKLAINLG  248 (291)
T ss_pred             ----------------------------------------------------HHHHHHHHHhccCCchhhhHHHHHhccC
Confidence                                                                3344445589999999999999999998


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      .         ..++...+..|-.-......+.|-.||+.+|- +| |+|.+++.
T Consensus       249 ~---------evdiasgl~iEe~CYaq~i~t~drLeglaaf~-ek-r~p~y~G~  291 (291)
T KOG1679|consen  249 M---------EVDIASGLSIEEMCYAQIIPTKDRLEGLAAFK-EK-RKPEYKGE  291 (291)
T ss_pred             c---------eecccccccHHHHHHHhcCcHHHHHHHHHHHH-hh-cCCCcCCC
Confidence            7         56888899888888888999999999999999 67 89998863

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.3e-45  Score=350.55  Aligned_cols=187  Identities=20%  Similarity=0.275  Sum_probs=163.6

Q ss_pred             ccceEEEEe----cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhh
Q 012534           65 EEFVKGNVH----PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK  140 (461)
Q Consensus        65 ~~~i~~~~~----~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~  140 (461)
                      +++|.++..    +++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......
T Consensus         2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~   79 (222)
T PRK05869          2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLSAQ   79 (222)
T ss_pred             ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccChh
Confidence            345555542    58999999999986 999999999999999999999999999999997 899999999987531100


Q ss_pred             cCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE
Q 012534          141 DRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL  220 (461)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f  220 (461)
                                                 .....+.....++.++.++||||||+|||+|+|||++|+++|||||++++++|
T Consensus        80 ---------------------------~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f  132 (222)
T PRK05869         80 ---------------------------EADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKF  132 (222)
T ss_pred             ---------------------------hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEE
Confidence                                       00112333456778899999999999999999999999999999999999999


Q ss_pred             eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      ++||+++|++|++|++++|++++|.. +++++++||+.++ |+||+++||||+++|++++.+
T Consensus       133 ~~pe~~~Gl~p~~g~~~~l~~~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~  192 (222)
T PRK05869        133 GATEILAGLAPSGDGMARLTRAAGPS-RAKELVFSGRFFD-AEEALALGLIDEMVAPDDVYD  192 (222)
T ss_pred             cCchhccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHCCCCCEeeCchHHHH
Confidence            99999999999999999999999997 9999999999999 999999999999999877654

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-44  Score=359.99  Aligned_cols=260  Identities=19%  Similarity=0.276  Sum_probs=203.2

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      +++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.........
T Consensus         2 ~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~~   79 (288)
T PRK08290          2 EYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDPG   79 (288)
T ss_pred             CCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCccccccccccccc
Confidence            466788887 789999999999999999999999999999999999999999999998 899999999986421110000


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                      ..  ......|.......   ...........+..++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        80 ~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~p  154 (288)
T PRK08290         80 PD--QHPTLWWDGATKPG---VEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDP  154 (288)
T ss_pred             cc--cccccccccccccc---hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCc
Confidence            00  00000000000000   00001112223345667889999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|+ |+ ++++++++++|.. ++++|+|||+.|+ |+||+++||||++||++++.+.+                   
T Consensus       155 e~~lGl-~~-~~~~~l~~~iG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a-------------------  211 (288)
T PRK08290        155 VVRMGI-PG-VEYFAHPWELGPR-KAKELLFTGDRLT-ADEAHRLGMVNRVVPRDELEAET-------------------  211 (288)
T ss_pred             ccccCc-Cc-chHHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCccEeeCHHHHHHHH-------------------
Confidence            999998 54 4567789999998 9999999999999 99999999999999987765422                   


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                       .+|++    +|+++||.+++.+|++++... 
T Consensus       212 -------------------------------------------------~~~a~----~la~~~~~a~~~~K~~~~~~~-  237 (288)
T PRK08290        212 -------------------------------------------------LELAR----RIAAMPPFGLRLTKRAVNQTL-  237 (288)
T ss_pred             -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHH-
Confidence                                                             24444    799999999999999999865 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhc-CCCc
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSS-LRSD  414 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~-~s~d  414 (461)
                             ...++++++..|.+.....+ ++++
T Consensus       238 -------~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T PRK08290        238 -------DAQGFRAALDAVFDLHQLGHAHNAE  262 (288)
T ss_pred             -------hhccHHHHHHHHHHHHHHccccchh
Confidence                   13369999999999998877 5555

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=5.1e-44  Score=393.77  Aligned_cols=289  Identities=20%  Similarity=0.238  Sum_probs=223.3

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++.......     
T Consensus         7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-----   80 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFAAP-----   80 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhccCC-----
Confidence            4666644689999999999999999999999999999999999999999999998 8999999999875311000     


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                         ......+......++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        81 -------------------~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~  141 (715)
T PRK11730         81 -------------------EEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETK  141 (715)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhh
Confidence                               0011224445566778899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.+++.........        .
T Consensus       142 lGl~p~~g~~~~L~rlvG~~-~A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~--------~  211 (715)
T PRK11730        142 LGIMPGFGGTVRLPRLIGAD-NALEWIAAGKDVR-AEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLD--------W  211 (715)
T ss_pred             cCCCCCchHHHHHHHhcCHH-HHHHHHHcCCcCC-HHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCc--------c
Confidence            99999999999999999998 9999999999999 999999999999999999887777665431100000        0


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEAL-QGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~-~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                      .....+...++..  ..+.++|.                       -..+++.+ ++.....|..+ .++++++...   
T Consensus       212 ~~~~~~~~~p~a~--~~~~~~~~-----------------------~~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~---  262 (715)
T PRK11730        212 KARRQPKLEPLKL--SKIEAMMS-----------------------FTTAKGMVAQKAGKHYPAPM-TAVKTIEAAA---  262 (715)
T ss_pred             ccccCcccccccc--cchhHHHH-----------------------HHHHHHHHHHhhccCCccHH-HHHHHHHHHh---
Confidence            0000000000000  00222221                       12333322 34455566555 7778888776   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVD  425 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~  425 (461)
                            ..+++++++.|.+.+..++.++|++||+++|+++
T Consensus       263 ------~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~  296 (715)
T PRK11730        263 ------GLGRDEALELEAKGFVKLAKTNVARALVGIFLND  296 (715)
T ss_pred             ------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                  5689999999999999999999999999999953

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.5e-43  Score=348.71  Aligned_cols=252  Identities=13%  Similarity=0.079  Sum_probs=199.3

Q ss_pred             CccceEEEE-ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEecCCCccccCCChhhHHHH
Q 012534           64 AEEFVKGNV-HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWES-----DPRVKCVLIEGSGPRAFCAGMDIKGVVAE  137 (461)
Q Consensus        64 ~~~~i~~~~-~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~-----d~~vr~vVltg~G~~~FcaG~Dl~~~~~~  137 (461)
                      .++.++++. .+++|++|+|| |+++|+||.+|+.+|.+++++++.     |+++|+|||+|.|+++||+|+|++++...
T Consensus        13 ~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~   91 (287)
T PRK08788         13 ELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAEL   91 (287)
T ss_pred             ccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhh
Confidence            455555543 26889999996 999999999999999999999998     89999999999944899999999987531


Q ss_pred             hhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHh---hCCCcEEEEeCCccchhhhHhhhcCCeEEE
Q 012534          138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKIS---EYKKPYISLMDGVTMGFGIGISGHGRYRIV  214 (461)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~kPvIAavnG~a~GgG~~LalacD~ria  214 (461)
                      .....                       ......+....+..+..+.   .+||||||+|||+|+|||++|+++|||||+
T Consensus        92 ~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria  148 (287)
T PRK08788         92 IRAGD-----------------------RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIA  148 (287)
T ss_pred             ccccc-----------------------hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEe
Confidence            10000                       0001112222222333333   799999999999999999999999999999


Q ss_pred             cCCceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCC
Q 012534          215 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE  294 (461)
Q Consensus       215 ~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~  294 (461)
                      +++++|++||+++|++|++|++++|++++|.. ++++|++||+.++ |+||++|||||++||++++.+.+          
T Consensus       149 ~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~-~A~ellltG~~l~-A~eA~~~GLV~~vv~~~el~~~a----------  216 (287)
T PRK08788        149 ERGAKMGFPEILFNLFPGMGAYSFLARRVGPK-LAEELILSGKLYT-AEELHDMGLVDVLVEDGQGEAAV----------  216 (287)
T ss_pred             cCCCEeeCchhhhCcCCCchHHHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHH----------
Confidence            99999999999999999999999999999997 9999999999999 99999999999999988776422          


Q ss_pred             ChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHH
Q 012534          295 DPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLT  374 (461)
Q Consensus       295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~t  374 (461)
                                                                                .+|++    +|+++ |.++..+
T Consensus       217 ----------------------------------------------------------~~~a~----~ia~~-~~~~~a~  233 (287)
T PRK08788        217 ----------------------------------------------------------RTFIR----KSKRK-LNGWRAM  233 (287)
T ss_pred             ----------------------------------------------------------HHHHH----HHhcC-ccHHHHH
Confidence                                                                      24444    67776 7777777


Q ss_pred             HHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHhhh
Q 012534          375 QKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLR-SDFAEGVRAVL  423 (461)
Q Consensus       375 k~~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s-~d~~egv~afl  423 (461)
                      |+.++...         ..++.+.++.|......++.. ..-++-|..|.
T Consensus       234 k~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (287)
T PRK08788        234 LRARRRVN---------PLSLEELMDITEIWVDAALQLEEKDLRTMERLV  274 (287)
T ss_pred             HHHHHhhc---------cCCHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            77777654         357899999988777765543 34567777777

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=8.1e-45  Score=333.82  Aligned_cols=272  Identities=20%  Similarity=0.311  Sum_probs=229.6

Q ss_pred             CccceEEE--EecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           64 AEEFVKGN--VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        64 ~~~~i~~~--~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      +|+.+.+.  ..+..|.++.||||.|+||||..|+.|+.++|+.+..||+||+|||.|+| +.||+|+|+..+.......
T Consensus        17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~~   95 (292)
T KOG1681|consen   17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRILQ   95 (292)
T ss_pred             ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhccc
Confidence            46655555  34567999999999999999999999999999999999999999999998 9999999988876542211


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                      ...           +    +..+.-..+.++...+++.+..|.+||||||++|||+|+|||+.|..+||+|+|+++|.|.
T Consensus        96 ~~~-----------d----d~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffs  160 (292)
T KOG1681|consen   96 PEG-----------D----DVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFS  160 (292)
T ss_pred             ccc-----------c----hHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceee
Confidence            110           0    0112233455567777888999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      .-|+.+|+..+.|...+||+++|..+.++++.+|++.|. |.||++.|||.+|+|+.+-.- ..+               
T Consensus       161 vkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~-a~EAl~~GLvSrvf~dk~~ll-~~~---------------  223 (292)
T KOG1681|consen  161 VKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFS-ADEALDSGLVSRVFPDKEELL-NGA---------------  223 (292)
T ss_pred             eeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcc-hhhhhhcCcchhhcCCHHHHH-hhh---------------
Confidence            999999999999999999999996669999999999999 999999999999998643210 011               


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                         ...|+    .|+.+||.+++.||+.|...
T Consensus       224 ---------------------------------------------------l~mA~----~Ia~KSpvaVqgTK~~L~ys  248 (292)
T KOG1681|consen  224 ---------------------------------------------------LPMAE----LIASKSPVAVQGTKENLLYS  248 (292)
T ss_pred             ---------------------------------------------------HHHHH----HhccCCceeeechHHHHHHH
Confidence                                                               14444    89999999999999999998


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN  433 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~  433 (461)
                      .         ..+.++.|.+-..+....+.+.|+.+++.+-+ .|.+++.|.
T Consensus       249 r---------ehsv~~sLnyvatwNms~L~s~Dl~~av~a~m-~k~k~~tfs  290 (292)
T KOG1681|consen  249 R---------EHSVEESLNYVATWNMSMLLSDDLVKAVMAQM-EKLKTVTFS  290 (292)
T ss_pred             h---------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCcc
Confidence            7         67999999999999999999999999999999 563344465

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=5.1e-43  Score=350.29  Aligned_cols=286  Identities=19%  Similarity=0.156  Sum_probs=215.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      +++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++........              
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~--------------  103 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNP--------------  103 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccCh--------------
Confidence            566999999999999999999999999999999999999999998679999999998754211000              


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS  236 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~  236 (461)
                                .....+...++.++..|..++|||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus       104 ----------~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt  173 (360)
T TIGR03200       104 ----------QEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGAT  173 (360)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHH
Confidence                      0111233344567788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCCC--
Q 012534          237 YIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGE--  314 (461)
Q Consensus       237 ~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~~--  314 (461)
                      ++|++++|.. +|+++++||+.++ |+||+++|||+++||+.++..        .|..+|.-...+++..|......+  
T Consensus       174 ~rLprlvG~~-rA~~llltGe~~s-A~EA~~~GLVd~VVp~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~  243 (360)
T TIGR03200       174 DFLPLMIGCE-QAMVSGTLCEPWS-AHKAKRLGIIMDVVPALKVDG--------KFVANPLVVTDRYLDEFGRIVHGEFK  243 (360)
T ss_pred             HHHHHhhCHH-HHHHHHHhCCcCc-HHHHHHcCChheecCchhcCc--------chhcCcccchHHHHHHHhHHhcCCCc
Confidence            9999999997 9999999999999 999999999999999877641        244455544445555544322222  


Q ss_pred             --chhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCcccc
Q 012534          315 --APLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL  392 (461)
Q Consensus       315 --~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~  392 (461)
                        ..+...+..+..+=.                +  ...+++-.+++..++...-|.++.-++..||...         .
T Consensus       244 ~~~~~~~~k~~~~~~~~----------------~--~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~  296 (360)
T TIGR03200       244 AGDELKAGKELIKQGTI----------------D--LSLLDEAVEALCAKLLNTFPECLTKSIEELRKPK---------L  296 (360)
T ss_pred             chhHHHHHHHHHhcccc----------------h--HhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhHH---------H
Confidence              122222222222100                0  0001122223344688888999999999999876         4


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534          393 SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV  424 (461)
Q Consensus       393 ~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~  424 (461)
                      ..+...-..-...+...+. .+..+|++||-+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  327 (360)
T TIGR03200       297 FAWNQNKENSRAWLALNMM-NEARTGFRAFNE  327 (360)
T ss_pred             HHHHhhhhhhHHHHHhhcc-cccchhhHHHhc
Confidence            4555555555556655555 889999999984

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-43  Score=353.92  Aligned_cols=208  Identities=20%  Similarity=0.259  Sum_probs=161.8

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.........
T Consensus         8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~~~~   85 (302)
T PRK08272          8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSSGGG   85 (302)
T ss_pred             CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhccccccc
Confidence            466788887 789999999999999999999999999999999999999999999998 899999999998642211000


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHH--HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSE--MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                      ....    .++..............  ...++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|+
T Consensus        86 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~  161 (302)
T PRK08272         86 GGAY----PGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIG  161 (302)
T ss_pred             cccc----ccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEec
Confidence            0000    00000000000000000  00123444567778899999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      +||+++|.+|+.   ..+++++|.. +|++|+|||+.|+ |+||+++||||++||++++.+
T Consensus       162 ~pe~~~gg~~~~---~~~~~~vG~~-~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~  217 (302)
T PRK08272        162 YPPTRVWGVPAT---GMWAYRLGPQ-RAKRLLFTGDCIT-GAQAAEWGLAVEAVPPEELDE  217 (302)
T ss_pred             CcchhcccCChH---HHHHHHhhHH-HHHHHHHcCCccC-HHHHHHcCCCceecCHHHHHH
Confidence            999998666643   3567789997 9999999999999 999999999999999877654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=6.5e-43  Score=384.96  Aligned_cols=284  Identities=20%  Similarity=0.236  Sum_probs=222.1

Q ss_pred             eEEEEecCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP-~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      +.++..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++......      
T Consensus         7 ~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~------   80 (708)
T PRK11154          7 FTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTA------   80 (708)
T ss_pred             EEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCH------
Confidence            555655689999999999 6899999999999999999999999999999999766899999999987531100      


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC--ceEeccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPE  224 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~--a~f~~pe  224 (461)
                                          .....+......++.+|.++||||||+|||+|+|||++|+++|||||++++  ++|++||
T Consensus        81 --------------------~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe  140 (708)
T PRK11154         81 --------------------QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPE  140 (708)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCcc
Confidence                                001113334456778899999999999999999999999999999999986  5899999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. +|++|++||+.++ |+||+++||||++||++++.+.+.+++...+...+.....   
T Consensus       141 ~~lGl~p~~gg~~~L~r~vG~~-~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~---  215 (708)
T PRK11154        141 VQLGLLPGSGGTQRLPRLIGVS-TALDMILTGKQLR-AKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVR---  215 (708)
T ss_pred             ccCCCCCCccHHhHHHhhcCHH-HHHHHHHhCCcCC-HHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCch---
Confidence            9999999999999999999998 9999999999999 9999999999999999998887777765411000000000   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCC-ccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSE-KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~-~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                .       .+   .+.. .....+               -+.+++.+.+-.+..-.|+..+|++++.+. 
T Consensus       216 ----------~-------~~---~~~~p~~~~~~---------------~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~-  259 (708)
T PRK11154        216 ----------E-------RL---LEGNPLGRALL---------------FKQARKKTLAKTQGNYPAPERILDVVRTGL-  259 (708)
T ss_pred             ----------h-------hh---cccCchhHHHH---------------HHHHHHHHHHhcccCChHHHHHHHHHHHHh-
Confidence                      0       00   0000 000111               122332222333444579999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                              ..++.+++..|.+.+..++.++|+++|+++|+.++
T Consensus       260 --------~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~  294 (708)
T PRK11154        260 --------EKGMSSGYEAEARAFGELAMTPESAALRSIFFATT  294 (708)
T ss_pred             --------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                    56899999999999999999999999999999643

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-42  Score=335.10  Aligned_cols=223  Identities=22%  Similarity=0.210  Sum_probs=190.7

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .|.++. +++|++||||||+ .|+||.+|+.+|.++++.++  +++++|||+|.| ++||+|+|++++.... .      
T Consensus         4 ~i~~~~-~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~~-~------   71 (229)
T PRK06213          4 LVSYTL-EDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSGA-Q------   71 (229)
T ss_pred             eEEEEe-cCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcch-H------
Confidence            477776 7899999999985 69999999999999999998  457999999998 8999999999875310 0      


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEecccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPEN  225 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~  225 (461)
                                           ....++.....++.++.++||||||+|||+|+|||++|+++|||||++++ ++|++||+
T Consensus        72 ---------------------~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~  130 (229)
T PRK06213         72 ---------------------AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEV  130 (229)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchh
Confidence                                 11224455567788899999999999999999999999999999999999 99999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|+.|+..++++.+|.. .++++++||+.++ |+||+++||||+++|++++.+.+                     
T Consensus       131 ~~Gl~~~~~~~~~l~~~~g~~-~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a---------------------  187 (229)
T PRK06213        131 AIGMTMPHAAIELARDRLTPS-AFQRAVINAEMFD-PEEAVAAGFLDEVVPPEQLLARA---------------------  187 (229)
T ss_pred             hhCCcCChHHHHHHHHHcCHH-HHHHHHHcCcccC-HHHHHHCCCceeccChHHHHHHH---------------------
Confidence            999998888888899999997 9999999999999 99999999999999987765322                     


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                     .+||+    +|++.+|.+++.+|++++...   
T Consensus       188 -----------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~---  213 (229)
T PRK06213        188 -----------------------------------------------QAAAR----ELAGLNMGAHAATKLKVRAAA---  213 (229)
T ss_pred             -----------------------------------------------HHHHH----HHhcCCHHHHHHHHHHHHHHH---
Confidence                                                           14444    799999999999999999865   


Q ss_pred             CCCccccCCHHHHHHHHHHH
Q 012534          386 GKTDNELSKLSGVMKYEYRV  405 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~  405 (461)
                            ...+.+.++.|.+.
T Consensus       214 ------~~~l~~~~~~~~~~  227 (229)
T PRK06213        214 ------LEAIRAAIEGDAAE  227 (229)
T ss_pred             ------HHHHHhchhhhhhh
Confidence                  45677777777654

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=5.2e-44  Score=326.24  Aligned_cols=261  Identities=23%  Similarity=0.293  Sum_probs=216.9

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEec--CCCccccCCChhhHHHHhhh
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGMDIKGVVAEIQK  140 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~--G~~~FcaG~Dl~~~~~~~~~  140 (461)
                      ..|+.|++++..++|+.||+|||+++||+.+..+.||.++|..+..|++|.+|||||.  |+++||+|+|-+-.......
T Consensus        15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY   94 (282)
T COG0447          15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY   94 (282)
T ss_pred             CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence            3588899998558999999999999999999999999999999999999999999975  78899999998864431100


Q ss_pred             cCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE
Q 012534          141 DRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL  220 (461)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f  220 (461)
                       .......                        .-...++.+.|+.+||||||.|+|+|+|||-.|-+.||+-||+++|+|
T Consensus        95 -~~d~~~~------------------------rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~F  149 (282)
T COG0447          95 -VDDDGIP------------------------RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIF  149 (282)
T ss_pred             -cCCccCc------------------------ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchh
Confidence             0000000                        011234566799999999999999999999999999999999999999


Q ss_pred             eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534          221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI  300 (461)
Q Consensus       221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~  300 (461)
                      ++...++|-+-++.++.+|.|++|.. +|+|+.+.++.++ |+||+++|+||.|||.++|++  +.+             
T Consensus       150 gQTgp~VGSFD~G~Gs~ylar~VGqK-kArEIwfLcR~Y~-A~eal~MGlVN~Vvp~~~LE~--e~v-------------  212 (282)
T COG0447         150 GQTGPKVGSFDGGYGSSYLARIVGQK-KAREIWFLCRQYD-AEEALDMGLVNTVVPHADLEK--ETV-------------  212 (282)
T ss_pred             cCCCCCcccccCcccHHHHHHHhhhh-hhHHhhhhhhhcc-HHHHHhcCceeeeccHHHHHH--HHH-------------
Confidence            99999999988777788899999998 9999999999999 999999999999999999875  222             


Q ss_pred             HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534          301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK  380 (461)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~  380 (461)
                                                                           +||+    .|.++||+|++..|..++.
T Consensus       213 -----------------------------------------------------~W~~----E~l~kSP~AlR~LK~Afna  235 (282)
T COG0447         213 -----------------------------------------------------QWAR----EMLAKSPTALRMLKAAFNA  235 (282)
T ss_pred             -----------------------------------------------------HHHH----HHHhcChHHHHHHHHHhcC
Confidence                                                                 8888    7999999999999999986


Q ss_pred             HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      -.          ..+.-.-+..-+...-.+.+++.+||..||+ +| |+|.|+.
T Consensus       236 d~----------DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~-eK-R~Pdf~~  277 (282)
T COG0447         236 DC----------DGLAGLQELAGNATLLYYMTDEAQEGRDAFL-EK-RKPDFSK  277 (282)
T ss_pred             CC----------chhhHHHHhcccceEEEEechhhhhhHHHHh-hc-cCCChHh
Confidence            33          3443333333333344568999999999999 78 8999864

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=1e-41  Score=374.63  Aligned_cols=281  Identities=17%  Similarity=0.223  Sum_probs=220.5

Q ss_pred             EEEecCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           70 GNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLI-EGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        70 ~~~~~~~V~~ItLnrP-~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVl-tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      ++..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+||| +|.| ++||+|+|++++......       
T Consensus         4 ~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~~~-------   75 (699)
T TIGR02440         4 LTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQTA-------   75 (699)
T ss_pred             EEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccCCh-------
Confidence            3444789999999999 68999999999999999999999999999997 5665 899999999987531100       


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC--ceEecccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPEN  225 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~--a~f~~pe~  225 (461)
                                         .....+....+.++..|.++||||||+|||+|+|||++|+++||||||+++  ++|++||+
T Consensus        76 -------------------~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev  136 (699)
T TIGR02440        76 -------------------GEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEV  136 (699)
T ss_pred             -------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhh
Confidence                               011123444566778899999999999999999999999999999999986  79999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhccc-CCChHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTF-SEDPHQDIVALL  304 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~-~~~~~~~~~~~l  304 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.+++.... ...|. ...   
T Consensus       137 ~lGl~p~~g~~~~L~r~vG~~-~A~~llltG~~~~-a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~-~~~---  210 (699)
T TIGR02440       137 QLGLLPGSGGTQRLPRLIGVS-TALDMILTGKQLR-AKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPL-SLQ---  210 (699)
T ss_pred             cccCCCCccHHHHHHHhcCHH-HHHHHHHcCCcCC-HHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCc-cch---
Confidence            999999999999999999998 9999999999999 9999999999999999999887777764300 00000 000   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                      .+....++                   .....++               +++.+.+++-....-.|...+|++++.+.  
T Consensus       211 ~~~~~~~~-------------------~a~~~~~---------------~~~~k~~~~~~~~~~~a~~~~~~~i~~~~--  254 (699)
T TIGR02440       211 ERLLEGTP-------------------LGRALLF---------------DQAAKKTAKKTQGNYPAAERILDVVRQGL--  254 (699)
T ss_pred             hhhcccCc-------------------hhHHHHH---------------HHHHHHHHHhcccCChhHHHHHHHHHHHh--
Confidence            00000000                   0111111               22333333344556788999999999887  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                             ..++.++++.|.+.+..++.++|+++++++|+.++
T Consensus       255 -------~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~  289 (699)
T TIGR02440       255 -------AQGMQKGLDAEARAFGELVMTPESAALRSIFFATT  289 (699)
T ss_pred             -------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence                   56899999999999999999999999999999644

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=8.4e-42  Score=375.55  Aligned_cols=291  Identities=19%  Similarity=0.221  Sum_probs=222.7

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .+.++..+++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......     
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-----   80 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALP-----   80 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhcccCC-----
Confidence            5777755789999999999999999999999999999999999999999999998 7999999999985311000     


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                         ......++.....++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        81 -------------------~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~  141 (714)
T TIGR02437        81 -------------------DAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETK  141 (714)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhh
Confidence                               0011123344456778899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+.+++.......+        ..
T Consensus       142 lGl~Pg~Ggt~rL~rliG~~-~A~~llltG~~~~-A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~--------~~  211 (714)
T TIGR02437       142 LGIMPGFGGTVRLPRVIGAD-NALEWIASGKENR-AEDALKVGAVDAVVTADKLGAAALQLLKDAINGKL--------DW  211 (714)
T ss_pred             cCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCC--------cc
Confidence            99999999999999999998 9999999999999 99999999999999999988877777543111000        00


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                      ......+...+  ....+.++|..                       +++++.+.+.......+...+.+.++.+.    
T Consensus       212 ~~~~~~~~~~~--~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~pap~~~~~~v~~~~----  262 (714)
T TIGR02437       212 KAKRQPKLEPL--KLSKIEAMMSF-----------------------TTAKGMVAQVAGPHYPAPMTAVKTIEKAA----  262 (714)
T ss_pred             cccCCCCcccc--cccchHHHHHH-----------------------HHHHHHHHHhhcCCCCCHHHHHHHHHHHh----
Confidence            00000000000  01123333221                       22232222233443344545556777765    


Q ss_pred             CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                           ..+++++++.|.+.+..++.|++.+..++.|+.++
T Consensus       263 -----~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r  297 (714)
T TIGR02437       263 -----RFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQ  297 (714)
T ss_pred             -----cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhH
Confidence                 46799999999999999999999999999999653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=2.2e-40  Score=365.09  Aligned_cols=299  Identities=19%  Similarity=0.204  Sum_probs=217.4

Q ss_pred             ccccCCccceEEEEecCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEecCCCccccCCChhhHHH
Q 012534           59 MAAAGAEEFVKGNVHPNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCV-LIEGSGPRAFCAGMDIKGVVA  136 (461)
Q Consensus        59 ~~~~~~~~~i~~~~~~~~V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~v-Vltg~G~~~FcaG~Dl~~~~~  136 (461)
                      +.+.+.++.+.++. +++|++||||||+ +.|+||.+|+.+|.++++.++.|+++|+| |++|.| ++||+|+|++++..
T Consensus         6 ~~~~~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~   83 (737)
T TIGR02441         6 SAALMARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAA   83 (737)
T ss_pred             CCCCCCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhc
Confidence            33345677788887 7999999999998 58999999999999999999999999965 568987 89999999999853


Q ss_pred             HhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcC
Q 012534          137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE  216 (461)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e  216 (461)
                      ....                          .....+......++.+|.++||||||+|||+|+|||++|+++||||||++
T Consensus        84 ~~~~--------------------------~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~  137 (737)
T TIGR02441        84 CKTA--------------------------QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATK  137 (737)
T ss_pred             cCCh--------------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcC
Confidence            1000                          01122344456678899999999999999999999999999999999998


Q ss_pred             C--ceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC-------------CChH
Q 012534          217 K--TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-------------GNLG  281 (461)
Q Consensus       217 ~--a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~-------------~~l~  281 (461)
                      +  ++|++||+++|++|++|++++|++++|.. +|++|++||++++ |+||+++||||++||+             +++.
T Consensus       138 ~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~-~A~~l~ltG~~i~-a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~  215 (737)
T TIGR02441       138 DRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVP-AALDMMLTGKKIR-ADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLE  215 (737)
T ss_pred             CCCCeEecchhhhCCCCCccHhhhHHHhhCHH-HHHHHHHcCCcCC-HHHHHHCCCCeEecCCcccccccchhhhHHHHH
Confidence            7  58999999999999999999999999998 9999999999999 9999999999999986             2233


Q ss_pred             HHHHHHHhcccCCChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHH
Q 012534          282 SLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQ  361 (461)
Q Consensus       282 ~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~  361 (461)
                      +.+.+++.......      ...+++...+++.....         .........++               +.+++.+.
T Consensus       216 ~~A~~~a~~l~~~~------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~---------------~~~~~~~~  265 (737)
T TIGR02441       216 EVAVKFAQGLANGK------LSINRDKGLVHKITQYV---------MTNPFVRQQVY---------------KTAEDKVM  265 (737)
T ss_pred             HHHHHHHHHhhccc------CCccccccccCccchhh---------cccchhHHHHH---------------HHHHHHHH
Confidence            33333321100000      00000000000000000         00000001111               22222222


Q ss_pred             HHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          362 GMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       362 ~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                      +-.+....|...+.+++..+.         ..+++++++.|.+.+..++.|++.+.-++.|+.++
T Consensus       266 ~~~~g~~~Ap~~~l~~v~~~~---------~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~  321 (737)
T TIGR02441       266 KQTKGLYPAPLKILDVVRTGY---------DQGPDAGYEAESKAFGELSMTFESKALIGLFHGQT  321 (737)
T ss_pred             HhccCCCccHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            223343556666777888766         56899999999999999999999999999998643

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=5.9e-40  Score=317.61  Aligned_cols=185  Identities=16%  Similarity=0.166  Sum_probs=153.5

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK-CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr-~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      +.++. +++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++....  . .   
T Consensus         2 ~~~~~-~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~~--~-~---   72 (239)
T PLN02267          2 CTLEK-RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAAG--S-A---   72 (239)
T ss_pred             ceeEe-cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhccc--c-C---
Confidence            45665 78999999999986 9999999999999999999999875 77778887 8999999999864210  0 0   


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEc-CCceEecccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPEN  225 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~-e~a~f~~pe~  225 (461)
                                         ......+...+..++.+|.++||||||+|||+|+|||++|+++||+||++ ++++|++||+
T Consensus        73 -------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~  133 (239)
T PLN02267         73 -------------------PSRLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEV  133 (239)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEecccc
Confidence                               00111133344567788999999999999999999999999999999998 5689999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHH-HHHhhcCCCCCcHHHHHHcCccceecCC-CChHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVG-AYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGS  282 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a-~~l~LtG~~i~~A~eA~~~GLv~~vv~~-~~l~~  282 (461)
                      ++|++|+++++.+|++++|.. ++ ++|++||+.++ |+||+++||||+++|+ +++.+
T Consensus       134 ~~Gl~~p~~~~~~l~~~vG~~-~a~~~llltG~~~~-a~eA~~~Glv~~vv~~~~~l~~  190 (239)
T PLN02267        134 DIGLPLPDYFMALLRAKIGSP-AARRDVLLRAAKLT-AEEAVEMGIVDSAHDSAEETVE  190 (239)
T ss_pred             ccCCCCChHHHHHHHHHcChH-HHHHHHHHcCCcCC-HHHHHHCCCcceecCCHHHHHH
Confidence            999974444578999999987 88 69999999999 9999999999999985 45543

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-39  Score=306.36  Aligned_cols=258  Identities=20%  Similarity=0.279  Sum_probs=223.6

Q ss_pred             CccceEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           64 AEEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLn-rP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      .+..+.+++ +||+.+|.+| ||++.|+|+.+|+.++..+|+.+.+|+++..++++|.| ++||+|.|++.+......+.
T Consensus         5 ~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~~d~   82 (266)
T KOG0016|consen    5 RYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALDDDA   82 (266)
T ss_pred             cccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCCCcc
Confidence            356677776 7999999999 99999999999999999999999999999999999998 89999999999886543322


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                      ...                    ....-.+...+-.+...+..+|||+||.|||+|+|-|+.+...||+++|+|++.|..
T Consensus        83 ~~~--------------------~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~T  142 (266)
T KOG0016|consen   83 NEE--------------------SDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQT  142 (266)
T ss_pred             ccc--------------------chhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEec
Confidence            111                    011111222223466788999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      |++++|..|++|+++.||+++|.. .|.||++.|++++ |+||++.|||+++++.+++.+                    
T Consensus       143 Pfa~lGq~PEG~Ss~t~p~imG~~-~A~E~ll~~~klt-A~Ea~~~glVskif~~~tf~~--------------------  200 (266)
T KOG0016|consen  143 PFAKLGQSPEGCSSVTLPKIMGSA-SANEMLLFGEKLT-AQEACEKGLVSKIFPAETFNE--------------------  200 (266)
T ss_pred             cchhcCCCCCcceeeeehHhhchh-hHHHHHHhCCccc-HHHHHhcCchhhhcChHHHHH--------------------
Confidence            999999999999999999999997 9999999999999 999999999999999877653                    


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                          -+.+.++++++.+|.+++..|++++...
T Consensus       201 ----------------------------------------------------~v~~~ikq~s~l~p~sl~~~K~L~rs~~  228 (266)
T KOG0016|consen  201 ----------------------------------------------------EVLKKIKQYSKLSPESLLGMKKLLRSNI  228 (266)
T ss_pred             ----------------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence                                                                2223345788999999999999999877


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                               ...+..+.+.|.......|.++|+...+.+|+.++
T Consensus       229 ---------k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~  263 (266)
T KOG0016|consen  229 ---------KEELIKANEEECNVLLKQWVSAECLARFKQYLSKK  263 (266)
T ss_pred             ---------HHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence                     56899999999999999999999999999999543

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=1.1e-37  Score=291.86  Aligned_cols=192  Identities=32%  Similarity=0.452  Sum_probs=172.6

Q ss_pred             EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCC
Q 012534           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (461)
Q Consensus        69 ~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (461)
                      .+++ +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||.| +.||+|+|++++.......       
T Consensus         2 ~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~~~-------   72 (195)
T cd06558           2 LVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSDAG-------   72 (195)
T ss_pred             EEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccccc-------
Confidence            4555 679999999999999999999999999999999999999999999995 8999999999987532110       


Q ss_pred             CCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccC
Q 012534          149 KVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG  228 (461)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lG  228 (461)
                                        .....++...+.++.++..++||+||+|||+|+|+|++++++||+||++++++|++||+++|
T Consensus        73 ------------------~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G  134 (195)
T cd06558          73 ------------------EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLG  134 (195)
T ss_pred             ------------------hhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcC
Confidence                              01334677778889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHh
Q 012534          229 LFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA  289 (461)
Q Consensus       229 l~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~  289 (461)
                      ++|+.|++++|++++|.. .+.+++++|+.++ |+||+++|||+++++.+++.+.+.+++.
T Consensus       135 ~~p~~g~~~~l~~~~g~~-~a~~~~l~g~~~~-a~ea~~~Glv~~~~~~~~l~~~a~~~a~  193 (195)
T cd06558         135 LVPGGGGTQRLPRLVGPA-RARELLLTGRRIS-AEEALELGLVDEVVPDEELLAAALELAR  193 (195)
T ss_pred             CCCCCcHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCCeecChhHHHHHHHHHHh
Confidence            999999999999999987 9999999999999 9999999999999999888876666543

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-37  Score=280.85  Aligned_cols=253  Identities=24%  Similarity=0.356  Sum_probs=217.9

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      .+++. +++|-.|+||+|+++|.|+.+|+.+|.+.|....++.++|+|||+..| +.||+|.||+++......       
T Consensus        34 g~~~~-~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~g~-------  104 (287)
T KOG1682|consen   34 GLVKE-HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEPGS-------  104 (287)
T ss_pred             ccccc-ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCccc-------
Confidence            34444 589999999999999999999999999999999999999999999998 899999999999753211       


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                         +.-.+.|...-+++..|+++|+|||+-|||+|..+||.|...||++|++++++|..|...+
T Consensus       105 -------------------d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~v  165 (287)
T KOG1682|consen  105 -------------------DIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGV  165 (287)
T ss_pred             -------------------hHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCce
Confidence                               1123467777788899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++...-| .-|.|.+.+. .+.+|++||.+|+ ++||+..|||+++||.++++..++.+                    
T Consensus       166 GlFCSTPG-vAlaRavpRk-va~~ML~Tg~Pi~-~eeAl~sGlvskvVp~~el~~e~~~i--------------------  222 (287)
T KOG1682|consen  166 GLFCSTPG-VALARAVPRK-VAAYMLMTGLPIT-GEEALISGLVSKVVPAEELDKEIEEI--------------------  222 (287)
T ss_pred             eeEecCcc-hhHhhhcchh-HHHHHHHhCCCCc-hHHHHHhhhhhhcCCHHHHHHHHHHH--------------------
Confidence            98643322 2478888887 9999999999999 99999999999999999987543333                    


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                      +    .+|...|...+.+-|+.+....     
T Consensus       223 ------------------------------------------------~----~~i~~~srav~slgk~f~y~q~-----  245 (287)
T KOG1682|consen  223 ------------------------------------------------T----NAIKAKSRAVISLGKEFYYKQL-----  245 (287)
T ss_pred             ------------------------------------------------H----HHHhhhHHHHHHHHHHHHHHHH-----
Confidence                                                            2    2577888888888999888765     


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                          ..+-.+++....+.....+.-.|.+||+.+|+ +| |+|+|++
T Consensus       246 ----~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~-~k-rp~~~~h  286 (287)
T KOG1682|consen  246 ----AMSQAEAFSAAQEKMCENFQLGDTKEGIASFF-EK-RPPNWKH  286 (287)
T ss_pred             ----HHhHHHHHHHHHHHHhhcccccchHHHHHHHh-cc-CCCCcCC
Confidence                56778899999999999999999999999999 78 8999987

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=3.3e-37  Score=327.07  Aligned_cols=201  Identities=15%  Similarity=0.183  Sum_probs=167.6

Q ss_pred             CCccceEEEEecCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEecCCCccccCCCh
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI  131 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~----------~~Nal~~~m~~eL~~~l~~~~-~d~~vr~vVltg~G~~~FcaG~Dl  131 (461)
                      ..++.+.++. +++|++||||||+          ++|+||.+|+.+|.++++.++ .|+++|+|||||.|+++||+|+|+
T Consensus         8 ~~~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL   86 (546)
T TIGR03222         8 SQYRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI   86 (546)
T ss_pred             CCCceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence            4567888887 6899999999976          899999999999999999999 799999999999755899999999


Q ss_pred             hhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHH-HHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC
Q 012534          132 KGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTA-EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR  210 (461)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD  210 (461)
                      +++.......  .                   .   ....+... ...+...+.++||||||+|||+|+|||++|+++||
T Consensus        87 ~~~~~~~~~~--~-------------------~---~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD  142 (546)
T TIGR03222        87 FMLGLSTHAW--K-------------------V---NFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACD  142 (546)
T ss_pred             HHHhccccch--h-------------------h---hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCC
Confidence            9874210000  0                   0   00011111 12244567889999999999999999999999999


Q ss_pred             eEEEcCC--ceEeccccc-cCCCCCchHHHHHh--cCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHH
Q 012534          211 YRIVTEK--TLLAMPENG-IGLFPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKE  285 (461)
Q Consensus       211 ~ria~e~--a~f~~pe~~-lGl~P~~G~~~~L~--rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~  285 (461)
                      +||++++  ++|++||++ +|++|++|++.+++  +.+|.. +|++|++||+.|+ |+||++|||||++||++++.+.+.
T Consensus       143 ~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~  220 (546)
T TIGR03222       143 EIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRD-HADIFCTIEEGVR-GKRAKEWRLVDEVVKPSQFDAAIA  220 (546)
T ss_pred             EEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHH-HHHHHHHcCCCcc-HHHHHHcCCceEEeChHHHHHHHH
Confidence            9999986  799999997 99999999999997  689997 9999999999999 999999999999999998887766


Q ss_pred             HHHhc
Q 012534          286 ALLAV  290 (461)
Q Consensus       286 ala~~  290 (461)
                      ++++.
T Consensus       221 ~lA~~  225 (546)
T TIGR03222       221 ERAAE  225 (546)
T ss_pred             HHHHH
Confidence            66544

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.1e-36  Score=324.04  Aligned_cols=200  Identities=16%  Similarity=0.214  Sum_probs=166.3

Q ss_pred             CCccceEEEEecCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEecCCCccccCCCh
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRP-------K---ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI  131 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP-------~---~~Nal~~~m~~eL~~~l~~~~-~d~~vr~vVltg~G~~~FcaG~Dl  131 (461)
                      ++++.+.++. +++|++||||||       +   ++|+||.+|+.+|.++++.++ .|+++|+|||||.|+++||+|+|+
T Consensus        12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL   90 (550)
T PRK08184         12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI   90 (550)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence            5678899987 689999999965       4   899999999999999999999 789999999999866899999999


Q ss_pred             hhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHH-HHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC
Q 012534          132 KGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGR  210 (461)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD  210 (461)
                      +++.......                       .. ....+.... ..+...+.++||||||+|||+|+|||++|+++||
T Consensus        91 ~~~~~~~~~~-----------------------~~-~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD  146 (550)
T PRK08184         91 FMLGGSSHAW-----------------------KV-NFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACD  146 (550)
T ss_pred             HhHhccccch-----------------------hh-hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCC
Confidence            9864311000                       00 000011111 1234467889999999999999999999999999


Q ss_pred             eEEEcCC--ceEeccccc-cCCCCCchHHHHHh--cCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHH
Q 012534          211 YRIVTEK--TLLAMPENG-IGLFPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKE  285 (461)
Q Consensus       211 ~ria~e~--a~f~~pe~~-lGl~P~~G~~~~L~--rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~  285 (461)
                      |||++++  ++|++||++ +|++|++|++++|+  +.+|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus       147 ~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~-~A~~llltG~~i~-AeeA~~~GLVd~vv~~d~l~~~a~  224 (550)
T PRK08184        147 EIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRD-LADIFCTIEEGVR-GKRAVDWRLVDEVVKPSKFDAKVA  224 (550)
T ss_pred             EEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHH-HHHHHHHhCCccc-HHHHHHcCCccEeeCHHHHHHHHH
Confidence            9999987  899999997 99999999999998  779987 9999999999999 999999999999999988877665


Q ss_pred             HHHh
Q 012534          286 ALLA  289 (461)
Q Consensus       286 ala~  289 (461)
                      +++.
T Consensus       225 ~~A~  228 (550)
T PRK08184        225 ERAA  228 (550)
T ss_pred             HHHH
Confidence            5543

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=99.91  E-value=4.5e-24  Score=184.13  Aligned_cols=117  Identities=44%  Similarity=0.760  Sum_probs=101.0

Q ss_pred             hhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHH
Q 012534          317 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLS  396 (461)
Q Consensus       317 ~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~  396 (461)
                      +..+.+.|++||+.+ |+++|+++|+...       .+||.++++.|.++||+|+++|.++++++.         ..++.
T Consensus         2 L~~~~~~I~~~F~~~-s~~eI~~~L~~~~-------~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~---------~~sl~   64 (118)
T PF13766_consen    2 LAEHLEAIDRCFSAD-SVEEIIEALEADG-------DEWAQKTLETLRSGSPLSLKVTFEQLRRGR---------NLSLA   64 (118)
T ss_dssp             CHHCHHHHHHHTTSS-SHHHHHHHHHHHS--------HHHHHHHHHHCCS-HHHHHHHHHHHHCCT---------TS-HH
T ss_pred             hHHHHHHHHHHhCCC-CHHHHHHHHHccC-------cHHHHHHHHHHHHCCHHHHHHHHHHHHHhh---------hCCHH
Confidence            566788999999988 9999999999965       499999999999999999999999999987         68999


Q ss_pred             HHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhcccc
Q 012534          397 GVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFE  450 (461)
Q Consensus       397 ~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~  450 (461)
                      +|+++|+++..+++.++||.|||+|.|+||++.|+|+|++++||+++.|++||+
T Consensus        65 e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~  118 (118)
T PF13766_consen   65 ECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE  118 (118)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999995

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.77  E-value=1.4e-18  Score=160.90  Aligned_cols=142  Identities=15%  Similarity=0.015  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHH
Q 012534           94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVF  173 (461)
Q Consensus        94 ~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      -.+.+|.++++.+++|+++++|||++     ||.|+|+.....                                     
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~~-------------------------------------   59 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASEV-------------------------------------   59 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHHH-------------------------------------
Confidence            35789999999999999999999986     688888765321                                     


Q ss_pred             HHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHH--------HHhcCCC-
Q 012534          174 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY--------IAAKGPG-  244 (461)
Q Consensus       174 ~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~--------~L~rlvG-  244 (461)
                        ...++..+.+++|||||+|||.|.|||+.|+++||++++++.+.|+.+.+..+..+......        .+++..| 
T Consensus        60 --~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~  137 (177)
T cd07014          60 --IRAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHS  137 (177)
T ss_pred             --HHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence              12345567789999999999999999999999999999999999999987766433222222        4455555 


Q ss_pred             -chHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534          245 -GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       245 -~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                       .. ..++++..|..++ |++|++.||||++.+.+++.
T Consensus       138 ~~~-~~~~~l~~g~~~~-a~~A~~~GLVD~v~~~~e~~  173 (177)
T cd07014         138 TPE-QQIDKIAQGGVWT-GQDAKANGLVDSLGSFDDAV  173 (177)
T ss_pred             CHH-HhHHHhcCcCeEe-HHHHHHcCCcccCCCHHHHH
Confidence             54 6788999999999 99999999999999876654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.76  E-value=6.8e-18  Score=157.62  Aligned_cols=145  Identities=12%  Similarity=0.014  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-ecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE-GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        78 ~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVlt-g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      ++|.++     ..++..+...+.+.|+.+.+|+ ++.|+|. .+      -|+++..-.                     
T Consensus         2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS------pGG~v~~~~---------------------   48 (187)
T cd07020           2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDT------PGGLLDSTR---------------------   48 (187)
T ss_pred             EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC------CCCCHHHHH---------------------
Confidence            456665     3466778889999999998765 7877775 33      133333211                     


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeC---CccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCc
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV  233 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavn---G~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~  233 (461)
                                           .++..|..+|||||++|+   |+|.|||+.|+++||++|++++++|+++++..|..+..
T Consensus        49 ---------------------~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~  107 (187)
T cd07020          49 ---------------------EIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGG  107 (187)
T ss_pred             ---------------------HHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCc
Confidence                                 234456789999999999   99999999999999999999999999999985554432


Q ss_pred             --------------hHHHHHhcCCCc--hHHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534          234 --------------GFSYIAAKGPGG--GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  278 (461)
Q Consensus       234 --------------G~~~~L~rlvG~--~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~  278 (461)
                                    +....+++..|.  . .+++++++|+.|+ |+||+++||||+++++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~~G~~~~-~a~~~l~~g~~~~-a~eA~~~Glvd~v~~~~  166 (187)
T cd07020         108 SDPVMEKKILNDAVAYIRSLAELRGRNAE-WAEKAVRESLSLT-AEEALKLGVIDLIAADL  166 (187)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHcCCeec-HHHHHHcCCcccccCCH
Confidence                          245578888887  4 7899999999999 99999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.62  E-value=1.8e-15  Score=143.89  Aligned_cols=101  Identities=15%  Similarity=0.176  Sum_probs=81.4

Q ss_pred             EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCC
Q 012534           77 VAVITLDRP--KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKC  154 (461)
Q Consensus        77 V~~ItLnrP--~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~  154 (461)
                      |++|.++-|  +..+..+..++.+|.++|+.+..||++++|||+     .||+|+|+..+..                  
T Consensus         2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~~------------------   58 (211)
T cd07019           2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASEV------------------   58 (211)
T ss_pred             EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHHH------------------
Confidence            555555543  222344556789999999999999999999996     7999999977532                  


Q ss_pred             CCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          155 GDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                                       .    ++.+..+..++|||||+++|+|.|+|+.|+++||++++++.+.|+
T Consensus        59 -----------------~----~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g  104 (211)
T cd07019          59 -----------------I----RAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG  104 (211)
T ss_pred             -----------------H----HHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE
Confidence                             1    223456788999999999999999999999999999999998876

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.50  E-value=7.2e-14  Score=151.28  Aligned_cols=160  Identities=18%  Similarity=0.180  Sum_probs=120.6

Q ss_pred             cCcEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEec--CCCccccCCChhhHHHHhhhcCCCCCCCC
Q 012534           74 PNGVAVITLDRPK--ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGMDIKGVVAEIQKDRNTPLVPK  149 (461)
Q Consensus        74 ~~~V~~ItLnrP~--~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~--G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (461)
                      ++.|++|.++.+=  ..|..+....+.+.+.|+.+..|++|++|||+-.  |+.+||+    ..+               
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e~i---------------  367 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----EII---------------  367 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----HHH---------------
Confidence            5789999999763  2344444456788899999999999999999953  3234443    111               


Q ss_pred             CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE------ecc
Q 012534          150 VPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL------AMP  223 (461)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f------~~p  223 (461)
                                                 ++.+.++...+||||+.++|+|.+||+.++++||.++|++.+.+      +++
T Consensus       368 ---------------------------~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~  420 (584)
T TIGR00705       368 ---------------------------RRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVL  420 (584)
T ss_pred             ---------------------------HHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEc
Confidence                                       12334466778999999999999999999999999999999876      665


Q ss_pred             c------cccCCCCCchHHHHHhc----------------------------CCCchHH-----HHHHhhcCCCCCcHHH
Q 012534          224 E------NGIGLFPDVGFSYIAAK----------------------------GPGGGSV-----GAYLGMTGKRISTPSD  264 (461)
Q Consensus       224 e------~~lGl~P~~G~~~~L~r----------------------------lvG~~~~-----a~~l~LtG~~i~~A~e  264 (461)
                      .      .++|+.|+...+..+..                            .++.. +     ..+.+.+|+.++ |+|
T Consensus       421 ~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~-R~l~~e~v~~ia~Grv~t-g~e  498 (584)
T TIGR00705       421 PTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAG-RNLTPTQVDKVAQGRVWT-GED  498 (584)
T ss_pred             cCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHhCCCcC-HHH
Confidence            3      58999988776655443                            34433 4     678889999999 999


Q ss_pred             HHHcCccceecCCCChH
Q 012534          265 ALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       265 A~~~GLv~~vv~~~~l~  281 (461)
                      |+++||||++..-++..
T Consensus       499 A~~~GLVD~ig~~~~Ai  515 (584)
T TIGR00705       499 AVSNGLVDALGGLDEAV  515 (584)
T ss_pred             HHHcCCcccCCCHHHHH
Confidence            99999999996443333

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.47  E-value=5.9e-13  Score=126.98  Aligned_cols=96  Identities=18%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             cCCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhh
Q 012534           83 DRPKALNA-MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEIS  161 (461)
Q Consensus        83 nrP~~~Na-l~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (461)
                      ++|...|+ ++..++.+|.++|+.++.|+++++|||+.     +|.|+++.....                         
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~~~-------------------------   62 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGVFE-------------------------   62 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHHHH-------------------------
Confidence            55655565 45789999999999999999999999975     455666543211                         


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          162 TQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                    +...+..+.. +|||||+++|+|.|||+.|+++||++++++.+.|+..
T Consensus        63 --------------l~~~l~~~~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i  109 (214)
T cd07022          63 --------------LADAIRAARA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI  109 (214)
T ss_pred             --------------HHHHHHHHhc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence                          1122333444 6999999999999999999999999999999987544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.46  E-value=6.6e-13  Score=120.77  Aligned_cols=135  Identities=14%  Similarity=0.042  Sum_probs=102.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHH
Q 012534           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMI  170 (461)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                      ++..++.+|.+.|+.++.|+.+++|+|..     .|.|+|+....                                   
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~~~-----------------------------------   47 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDAGM-----------------------------------   47 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHHHH-----------------------------------
Confidence            55688999999999999999999999975     35677665432                                   


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHH-------------H
Q 012534          171 EVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS-------------Y  237 (461)
Q Consensus       171 ~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~-------------~  237 (461)
                             .+...|..++||||+.++|.|.++|+.|+++||.|++.+++.|++..+..+.....+-.             .
T Consensus        48 -------~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  120 (161)
T cd00394          48 -------NIVDALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIA  120 (161)
T ss_pred             -------HHHHHHHHhCCCEEEEECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHH
Confidence                   23335667889999999999999999999999999999999999988876553321000             0


Q ss_pred             HHhc------CCCchHHHHHHhhcCCCCCcHHHHHHcCcccee
Q 012534          238 IAAK------GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY  274 (461)
Q Consensus       238 ~L~r------lvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~v  274 (461)
                      .+..      -+... ...+++..|..++ |+||+++||||++
T Consensus       121 ~~~~~v~~~r~~~~~-~~~~~~~~~~~~~-a~eA~~~GLvD~i  161 (161)
T cd00394         121 RFISLVAENRGQTTE-KLEEDIEKDLVLT-AQEALEYGLVDAL  161 (161)
T ss_pred             HHHHHHHHhcCCCHH-HHHHHhcCCcEEc-HHHHHHcCCcCcC
Confidence            1111      11222 3567788899999 9999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.41  E-value=1.4e-12  Score=118.57  Aligned_cols=95  Identities=13%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCch---------------HHHHHhcCC
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG---------------FSYIAAKGP  243 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G---------------~~~~L~rlv  243 (461)
                      +...|..++||||+.++|.|.|+|+.|+++||+|+++++++|+++....|..+...               ....+.+..
T Consensus        50 i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~  129 (160)
T cd07016          50 IYNALKRHKGKVTVKIDGLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKT  129 (160)
T ss_pred             HHHHHHhcCCCEEEEEcchHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44567788999999999999999999999999999999999999877766544432               223367777


Q ss_pred             Cch-HHHHHHhhcCCCCCcHHHHHHcCcccee
Q 012534          244 GGG-SVGAYLGMTGKRISTPSDALFAGLGTDY  274 (461)
Q Consensus       244 G~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~v  274 (461)
                      |.. ....+++.++..++ |+||+++||||++
T Consensus       130 g~~~~~i~~~~~~~~~l~-a~eA~~~GliD~v  160 (160)
T cd07016         130 GLSEEEISALMDAETWLT-AQEAVELGFADEI  160 (160)
T ss_pred             CCCHHHHHHHHhCCeECc-HHHHHHcCCCCcC
Confidence            842 26677777777899 9999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.38  E-value=4.7e-12  Score=120.18  Aligned_cols=100  Identities=19%  Similarity=0.151  Sum_probs=78.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |++|.++.+=...  ...++.+|.++|+.++.|+++++|||++     +|.|+|+.....                    
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~~--------------------   54 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASEE--------------------   54 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHHH--------------------
Confidence            4555555431000  3688999999999999999999999987     467888865321                    


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                         +++.+..+..++|||||+++|+|.|+|+.|+++||++++++.+.|+.
T Consensus        55 -------------------i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~  101 (208)
T cd07023          55 -------------------IYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS  101 (208)
T ss_pred             -------------------HHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence                               12345567788999999999999999999999999999999998753

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.28  E-value=5.7e-11  Score=112.75  Aligned_cols=138  Identities=16%  Similarity=0.122  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHH
Q 012534           96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTA  175 (461)
Q Consensus        96 ~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                      ..+|.++|+.+.+|+++++|||++.     |.|+|+.....                                       
T Consensus        15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~~~~---------------------------------------   50 (207)
T TIGR00706        15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVASEE---------------------------------------   50 (207)
T ss_pred             HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHHHHH---------------------------------------
Confidence            5789999999999999999999864     66777654321                                       


Q ss_pred             HHHHHHHHhhCC--CcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc------------cCCCCC---------
Q 012534          176 EYSLICKISEYK--KPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGLFPD---------  232 (461)
Q Consensus       176 ~~~~~~~l~~~~--kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~------------lGl~P~---------  232 (461)
                         +...|..++  |||||+++|.|.|+|+.|+++||.+++++++.|+..-+.            +|+-+.         
T Consensus        51 ---l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~  127 (207)
T TIGR00706        51 ---IYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD  127 (207)
T ss_pred             ---HHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence               223455555  999999999999999999999999999999876653322            333210         


Q ss_pred             ---c--hHH----H------------H---HhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534          233 ---V--GFS----Y------------I---AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       233 ---~--G~~----~------------~---L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                         .  ..+    .            +   ..+--|......+=++.|+.++ +++|++.||||++...+++.
T Consensus       128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~-~~~A~~~gLvD~i~~~~~~~  199 (207)
T TIGR00706       128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFT-GRQALKLRLVDKLGTEDDAL  199 (207)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCccc-HHHHHHcCCCcccCCHHHHH
Confidence               0  000    0            0   0111122111122346789998 99999999999998765554

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.18  E-value=3.4e-10  Score=104.80  Aligned_cols=142  Identities=16%  Similarity=0.181  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCc
Q 012534           78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDV  157 (461)
Q Consensus        78 ~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (461)
                      .+|.++.     .+++.+...|.+.|+.+.+++ ++.|+|.=..     -|+++...                       
T Consensus         2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~ins-----pGG~v~~~-----------------------   47 (178)
T cd07021           2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDIDT-----PGGRVDSA-----------------------   47 (178)
T ss_pred             EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEEC-----cCCCHHHH-----------------------
Confidence            4455543     466788889999999999886 6666664221     22333322                       


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchH--
Q 012534          158 KEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF--  235 (461)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~--  235 (461)
                                         ..+...|..+++|||+.|+|.|.++|+.|+++||++++++++.|+.+.+-    +..|+  
T Consensus        48 -------------------~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~  104 (178)
T cd07021          48 -------------------LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGA  104 (178)
T ss_pred             -------------------HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccc
Confidence                               23455688899999999999999999999999999999999999998554    22222  


Q ss_pred             ------HHH------HhcCCCchH-HHHHHhhcC-------------CCCCcHHHHHHcCccceecCC
Q 012534          236 ------SYI------AAKGPGGGS-VGAYLGMTG-------------KRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       236 ------~~~------L~rlvG~~~-~a~~l~LtG-------------~~i~~A~eA~~~GLv~~vv~~  277 (461)
                            +..      +.+.-|+.. .+..|+--.             -.++ ++||++.|++|.++++
T Consensus       105 ~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lt-a~eA~~~g~~d~ia~~  171 (178)
T cd07021         105 ADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLT-ADEALKVGYAEGIAGS  171 (178)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeC-HHHHHHhCCeEEEECC
Confidence                  111      232334432 334444333             2698 9999999999999863

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.12  E-value=4.1e-10  Score=108.06  Aligned_cols=90  Identities=11%  Similarity=0.054  Sum_probs=74.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEM  169 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      .-+..++.+|.+.|+++..|+.|++|||+..+ ..| ++.++.++..                                 
T Consensus        25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s-~gg-~~~~~~el~~---------------------------------   69 (222)
T cd07018          25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDG-LSG-GLAKLEELRQ---------------------------------   69 (222)
T ss_pred             CcCCccHHHHHHHHHHHhcCCCeEEEEEECCC-CCC-CHHHHHHHHH---------------------------------
Confidence            34567789999999999999999999999987 455 7777766543                                 


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          170 IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       170 ~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                               .+..+...+|||||.++| |.+||+.|+++||.+++.+.+.|+..-
T Consensus        70 ---------~i~~~~~~~kpVia~~~~-~~sggy~lasaad~I~a~p~~~vg~iG  114 (222)
T cd07018          70 ---------ALERFRASGKPVIAYADG-YSQGQYYLASAADEIYLNPSGSVELTG  114 (222)
T ss_pred             ---------HHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCEEEECCCceEEeec
Confidence                     233455679999999998 889999999999999999999988853

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.70  E-value=6.9e-09  Score=103.68  Aligned_cols=171  Identities=15%  Similarity=0.101  Sum_probs=141.4

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG  155 (461)
Q Consensus        76 ~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (461)
                      ++..+.++ |++ |..|.++..+|...|+.++.+..+++.++|+.....|+||.|..++.-....               
T Consensus        66 ~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~---------------  128 (380)
T KOG1683|consen   66 GFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHF---------------  128 (380)
T ss_pred             ccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccc---------------
Confidence            78888888 776 9999999999999999999999889999999877899999999998753211               


Q ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhh--hHhhhcCCeEEEcC--CceEeccccccCCCC
Q 012534          156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFG--IGISGHGRYRIVTE--KTLLAMPENGIGLFP  231 (461)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG--~~LalacD~ria~e--~a~f~~pe~~lGl~P  231 (461)
                                  ....++.++.+++...++++.|+.+++||.+--||  |-++.+|+|++...  .-..+..+...|+..
T Consensus       129 ------------fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~  196 (380)
T KOG1683|consen  129 ------------FSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGA  196 (380)
T ss_pred             ------------cCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCC
Confidence                        11237778889999999999999999999999888  99999999999984  444467888888543


Q ss_pred             CchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          232 DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       232 ~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      +..-.-.+....|.+ .+-.-+--|.-++ -.||++-|+++.+.|.
T Consensus       197 ~p~~iD~~~t~fGf~-~g~~~L~d~~gfd-v~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  197 DPWLIDSLITKFGFR-VGERALADGVGFD-VAEALAVGLGDEIGPR  240 (380)
T ss_pred             CHHHHHHHHHhcCcc-ccHHHHhhccCcc-HHHHHhhccchhccch
Confidence            343444455566877 7777778889999 8999999999999984

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.49  E-value=3.1e-06  Score=77.90  Aligned_cols=139  Identities=14%  Similarity=0.157  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEM  169 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      .+++.+..-|.+.++.+++| .++.|+|.=.     |-|+++....                                  
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~~~----------------------------------   48 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADAAG----------------------------------   48 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHHHH----------------------------------
Confidence            36677888899999999876 4677777422     2233333221                                  


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEeC---CccchhhhHhhhcCCeEEEcCCceEeccccccCCCCC----c---h-HHHH
Q 012534          170 IEVFTAEYSLICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD----V---G-FSYI  238 (461)
Q Consensus       170 ~~~~~~~~~~~~~l~~~~kPvIAavn---G~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~----~---G-~~~~  238 (461)
                              .++..|...++||++.|+   |.|..+|.-|+++||.+++.+++.++...+-.|..+.    .   - -+..
T Consensus        49 --------~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~  120 (172)
T cd07015          49 --------NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYF  120 (172)
T ss_pred             --------HHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHH
Confidence                    233456678999999999   9999999999999999999999999987775433220    0   0 0111


Q ss_pred             ------HhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          239 ------AAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       239 ------L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                            +.+.-|+. ..+..++-....++ |+||+++|++|.++..
T Consensus       121 ~~~~r~~A~~~Gr~~~~a~~~v~~~~~lt-a~EA~~~G~iD~ia~~  165 (172)
T cd07015         121 IAYIKSLAQESGRNATIAEEFITKDLSLT-PEEALKYGVIEVVARD  165 (172)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHhhcCcC-HHHHHHcCCceeeeCC
Confidence                  12222321 25566677778899 9999999999999964

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.42  E-value=2.2e-06  Score=78.30  Aligned_cols=136  Identities=14%  Similarity=0.069  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHH
Q 012534           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMI  170 (461)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (461)
                      ++..+..++.+.|..++.++..+.|+|.=.     |.|+++..-                                    
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~~~------------------------------------   47 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVFAG------------------------------------   47 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHHHH------------------------------------
Confidence            467889999999999998877676666422     122332221                                    


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchHHH-----------
Q 012534          171 EVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY-----------  237 (461)
Q Consensus       171 ~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~~~-----------  237 (461)
                            ..++..|..+++|+++.+.|.|.++|.-|+++||  .|++.++++|.+....-|......-..           
T Consensus        48 ------~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~  121 (162)
T cd07013          48 ------MAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEG  121 (162)
T ss_pred             ------HHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHH
Confidence                  2344456778899999999999999999999999  688888888776443222111000000           


Q ss_pred             ----HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCcccee
Q 012534          238 ----IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDY  274 (461)
Q Consensus       238 ----~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~v  274 (461)
                          .+.+.-|.. ....+++-.+.-++ |+||+++||||++
T Consensus       122 ~~~~~~a~~tg~~~~~i~~~~~~~~~~s-a~eA~~~GliD~i  162 (162)
T cd07013         122 NLVSAYAHKTGQSEEELHADLERDTWLS-AREAVEYGFADTI  162 (162)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHcCCcccc-HHHHHHcCCCCcC
Confidence                112222321 13344555556668 9999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.38  E-value=5.3e-05  Score=74.01  Aligned_cols=139  Identities=18%  Similarity=0.119  Sum_probs=93.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .-+++++-.+...+.++.+.+.. +-+|-|.-.+ +++. |.+-.+-                                 
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtp-Ga~~-g~~aE~~---------------------------------  119 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTA-GAYP-GVGAEER---------------------------------  119 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECC-CcCC-CHhHHhc---------------------------------
Confidence            46788999999999999887754 4455554332 3443 3321100                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  247 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~  247 (461)
                         .....+...+..+....+|+|++|-|.|.|||......||+++|.+++.|+.      +.|.+.....+... ....
T Consensus       120 ---G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~-~~a~  189 (256)
T PRK12319        120 ---GQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDG-SRAT  189 (256)
T ss_pred             ---cHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCc-ccHH
Confidence               0233445566778889999999999999999998889999999999988765      22333333332221 1111


Q ss_pred             HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          248 VGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      .+.+.+    .++ +.++.+.|+||+|+|.
T Consensus       190 ~aa~~~----~~~-a~~l~~~g~iD~ii~e  214 (256)
T PRK12319        190 EAAELM----KIT-AGELLEMGVVDKVIPE  214 (256)
T ss_pred             HHHHHc----CCC-HHHHHHCCCCcEecCC
Confidence            333433    678 9999999999999974

>PRK10949 protease 4; Provisional

Probab=98.38  E-value=6e-06  Score=90.18  Aligned_cols=164  Identities=17%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             cCcEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCC
Q 012534           74 PNGVAVITLDRP-----KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (461)
Q Consensus        74 ~~~V~~ItLnrP-----~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (461)
                      .+.|++|.++.+     ...+.++.   +.+.+.|+.+..|++||+|||+=..|     |+....               
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~a---------------  381 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVTA---------------  381 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHHH---------------
Confidence            467888888642     22234544   46778899999999999999986543     221111               


Q ss_pred             CCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc----
Q 012534          149 KVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE----  224 (461)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe----  224 (461)
                                              -..+++.+.+++...|||||.+.|.|.-||..++++||.++|.+.+..+---    
T Consensus       382 ------------------------se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~  437 (618)
T PRK10949        382 ------------------------SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGV  437 (618)
T ss_pred             ------------------------HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEE
Confidence                                    1112333444566789999999999999999999999999999876433211    


Q ss_pred             --------cccCCCCCchHHH-----------------------------HH-----hcCCCchHHHHHHhhcCCCCCcH
Q 012534          225 --------NGIGLFPDVGFSY-----------------------------IA-----AKGPGGGSVGAYLGMTGKRISTP  262 (461)
Q Consensus       225 --------~~lGl~P~~G~~~-----------------------------~L-----~rlvG~~~~a~~l~LtG~~i~~A  262 (461)
                              -++|+-++...+-                             ++     .|-+..  ...+-+..|+.++ +
T Consensus       438 ~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~--~~v~~ia~Grv~t-g  514 (618)
T PRK10949        438 INTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTP--EQIDKIAQGHVWT-G  514 (618)
T ss_pred             ccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH--HHHHHHhcCCccc-H
Confidence                    1244432211110                             11     011111  1123356899999 9


Q ss_pred             HHHHHcCccceecCCCChHHHHHHH
Q 012534          263 SDALFAGLGTDYVPSGNLGSLKEAL  287 (461)
Q Consensus       263 ~eA~~~GLv~~vv~~~~l~~~~~al  287 (461)
                      ++|++.||||++-.-+++.+.+.++
T Consensus       515 ~~A~~~GLVD~lG~~~~ai~~a~~~  539 (618)
T PRK10949        515 QDAKANGLVDSLGDFDDAVAKAAEL  539 (618)
T ss_pred             HHHHHcCCCccCCCHHHHHHHHHHH
Confidence            9999999999998655554444443

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.34  E-value=3.5e-06  Score=79.62  Aligned_cols=136  Identities=14%  Similarity=0.062  Sum_probs=85.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhh
Q 012534           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQL  166 (461)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (461)
                      ..++.++...+...|..++.++..+-|.|  -+.|       +|+..-                                
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG-------G~v~~g--------------------------------   78 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG-------GSVTAG--------------------------------   78 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CcHHHH--------------------------------
Confidence            34778999999999998876543333333  3444       233221                                


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchHH--------
Q 012534          167 SEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFS--------  236 (461)
Q Consensus       167 ~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~~--------  236 (461)
                                ..++..|...+.|+++.+.|.|.++|..|+++++  .|++.++++|.+....-|.   .|-.        
T Consensus        79 ----------~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~  145 (200)
T PRK00277         79 ----------LAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAR  145 (200)
T ss_pred             ----------HHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHH
Confidence                      1233456677889999999999999999999853  4666666666554332111   1111        


Q ss_pred             ----------HHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          237 ----------YIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       237 ----------~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                                ..+...-|.. .....++-.+.-++ |+||+++||||+|+..
T Consensus       146 ~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ls-a~EA~e~GliD~Ii~~  196 (200)
T PRK00277        146 EILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMS-AEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcccc-HHHHHHcCCccEEeec
Confidence                      1122222331 13445555667788 9999999999999964

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.33  E-value=7.2e-05  Score=74.93  Aligned_cols=138  Identities=12%  Similarity=0.082  Sum_probs=93.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .-+++++-++...+.++.++... +-+|-|.-. +++++ |.+-.+..                                
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDT-pGA~~-G~~AE~~G--------------------------------  176 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDT-PGAWA-GVKAEKLG--------------------------------  176 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCc-CHHHHHHh--------------------------------
Confidence            46788999999999999888754 444444333 23554 43222111                                


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  247 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~  247 (461)
                          ....+...+..+....+|+|++|-|.|.|||.-....||+++|.+++.|+.      +.|.++++..+...    +
T Consensus       177 ----~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~----~  242 (322)
T CHL00198        177 ----QGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDS----K  242 (322)
T ss_pred             ----HHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcch----h
Confidence                223334455667889999999999999888876666799999999998864      33444444433322    2


Q ss_pred             HHHHHhhcCCCCCcHHHHHHcCccceecC
Q 012534          248 VGAYLGMTGKRISTPSDALFAGLGTDYVP  276 (461)
Q Consensus       248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~  276 (461)
                      ++.+. -..-+++ |++.++.|+||+|+|
T Consensus       243 ~a~~a-A~~~~it-a~dL~~~giiD~ii~  269 (322)
T CHL00198        243 KSLDA-AEALKIT-SEDLKVLGIIDEIIP  269 (322)
T ss_pred             hHHHH-HHHcCCC-HHHHHhCCCCeEecc
Confidence            44443 3445798 999999999999997

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.24  E-value=0.00012  Score=73.36  Aligned_cols=139  Identities=13%  Similarity=0.040  Sum_probs=91.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .-+++++-.+...+.++.++.-. +-+|-|.-.. ++++ |.+..+..                                
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDTp-Ga~~-g~~aE~~G--------------------------------  173 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERFK-MPIITFIDTP-GAYP-GIGAEERG--------------------------------  173 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECC-CCCC-CHHHHHHH--------------------------------
Confidence            46788999999999998888753 4445554332 3433 43322211                                


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  247 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~  247 (461)
                          ....+...+..+....+|+|++|-|.|.|||......||++++.+++.++.      +.|.++.+..+... .   
T Consensus       174 ----~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~-~---  239 (316)
T TIGR00513       174 ----QSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDA-S---  239 (316)
T ss_pred             ----HHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccch-h---
Confidence                223344566678889999999999999888776555799999999988764      23434333333221 1   


Q ss_pred             HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          248 VGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      ++.+..- -..++ |.++++.|+||.|+|.
T Consensus       240 ~a~~aae-~~~~t-a~~l~~~G~iD~II~e  267 (316)
T TIGR00513       240 KAPKAAE-AMKIT-APDLKELGLIDSIIPE  267 (316)
T ss_pred             hHHHHHH-HccCC-HHHHHHCCCCeEeccC
Confidence            2322222 26788 9999999999999973

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.23  E-value=0.00019  Score=73.83  Aligned_cols=138  Identities=15%  Similarity=0.101  Sum_probs=92.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE  168 (461)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      .+++++-++...+.++.++... +=+|-|.-.. +++ .|.+-.+..                                 
T Consensus       200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTp-GA~-pG~~AEe~G---------------------------------  243 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTP-GAY-AGIKAEELG---------------------------------  243 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcC-CCHHHHHHh---------------------------------
Confidence            5688999999999999888754 4444444332 233 343333211                                 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHH
Q 012534          169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  248 (461)
Q Consensus       169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~  248 (461)
                         ....+...+..+..+.+|+|++|-|.+.|||.....+||+++|.+++.++.      +.|.+.++..+....-.. .
T Consensus       244 ---qa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~-e  313 (431)
T PLN03230        244 ---QGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAP-K  313 (431)
T ss_pred             ---HHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchH-H
Confidence               223344566778899999999999999666655555789999999987654      234444444443332111 3


Q ss_pred             HHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          249 GAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       249 a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      +.+    .-.++ |.++++.|+||+|+|.
T Consensus       314 AAe----alkit-A~dL~~~GiID~II~E  337 (431)
T PLN03230        314 AAE----ALRIT-AAELVKLGVVDEIVPE  337 (431)
T ss_pred             HHH----HcCCC-HHHHHhCCCCeEeccC
Confidence            333    33899 9999999999999973

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.16  E-value=0.00028  Score=70.81  Aligned_cols=139  Identities=15%  Similarity=0.086  Sum_probs=94.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .-+++++-.+...+.++.++.-. +-+|-|.-.. ++++ |.+-.+-                                 
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f~-lPIVtlvDTp-Ga~~-G~~aE~~---------------------------------  172 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKFG-LPIITFIDTP-GAYP-GIGAEER---------------------------------  172 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CCCC-CHHHHhc---------------------------------
Confidence            45688999999999988887753 4555554432 3443 4322210                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  247 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~  247 (461)
                         .....+...+..+....+|+|++|-|.|.|||.-....||+++|.+++.|+       ++++-|+...|-+-.   .
T Consensus       173 ---G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~---~  239 (319)
T PRK05724        173 ---GQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDA---S  239 (319)
T ss_pred             ---cHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCc---h
Confidence               023444556777889999999999999988887666679999999888775       333344444443322   1


Q ss_pred             HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          248 VGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      ++.+..- ...++ +.++++.|+||+|+|.
T Consensus       240 ~a~~aae-~~~it-a~~l~~~g~iD~II~E  267 (319)
T PRK05724        240 KAPEAAE-AMKIT-AQDLKELGIIDEIIPE  267 (319)
T ss_pred             hHHHHHH-HcCCC-HHHHHHCCCceEeccC
Confidence            3443333 55688 9999999999999973

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.14  E-value=1.6e-05  Score=73.19  Aligned_cols=134  Identities=15%  Similarity=0.073  Sum_probs=92.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534           91 MNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE  168 (461)
Q Consensus        91 l~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      ++.++..++...|..+..++..+.|+|  .+.|       +|+..-.                                 
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG-------G~v~~~~---------------------------------   57 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPG-------GSVTAGL---------------------------------   57 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEECCC-------CCHHHHH---------------------------------
Confidence            567889999999999988765555554  3444       2332211                                 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchH-----------
Q 012534          169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGF-----------  235 (461)
Q Consensus       169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~-----------  235 (461)
                               .++..|...+.|+++.+.|.|.++|.-++++||  .|++.+++.|.+.+...+..-...-           
T Consensus        58 ---------~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~  128 (171)
T cd07017          58 ---------AIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRL  128 (171)
T ss_pred             ---------HHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHH
Confidence                     233446667899999999999999999999999  7999999999888776554322100           


Q ss_pred             ----HHHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCcccee
Q 012534          236 ----SYIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDY  274 (461)
Q Consensus       236 ----~~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~v  274 (461)
                          ...+...-|.. .....++-.+.-++ |+||+++||||+|
T Consensus       129 ~~~~~~~~~~~tg~~~~~i~~~~~~~~~lt-a~EA~e~GiiD~V  171 (171)
T cd07017         129 RRRLNEILAKHTGQPLEKIEKDTDRDRYMS-AEEAKEYGLIDKI  171 (171)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHhhCCcccc-HHHHHHcCCCccC
Confidence                00112222332 14455555777888 9999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.14  E-value=2.9e-05  Score=73.73  Aligned_cols=136  Identities=14%  Similarity=0.060  Sum_probs=94.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .++..+..++.+.|..++..+..+.|.|  .+.|       +++..-                                 
T Consensus        43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~~g---------------------------------   82 (207)
T PRK12553         43 QVDDASANDVMAQLLVLESIDPDRDITLYINSPG-------GSVTAG---------------------------------   82 (207)
T ss_pred             eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC-------CcHHHH---------------------------------
Confidence            4788999999999999987543343333  4444       333221                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEecccccc-CCCCCchHH--------
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGI-GLFPDVGFS--------  236 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~l-Gl~P~~G~~--------  236 (461)
                               ..++..|..++.|+++.+.|.|.+.|.-|+++||  .|++.+++.|.+..... |.  ..|-.        
T Consensus        83 ---------~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~  151 (207)
T PRK12553         83 ---------DAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAR  151 (207)
T ss_pred             ---------HHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHH
Confidence                     1244456778889999999999999999999999  59999999998876543 21  11211        


Q ss_pred             ----------HHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          237 ----------YIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       237 ----------~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                                ..+...-|.. ....+++-.+.-++ |+||+++||||++++.
T Consensus       152 ~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lt-a~EA~e~GliD~I~~~  202 (207)
T PRK12553        152 EILRMRERLERILAEHTGQSVEKIRKDTDRDKWLT-AEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccc-HHHHHHcCCccEEcCc
Confidence                      1223333432 14455666788898 9999999999999964

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.14  E-value=5e-05  Score=73.77  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=78.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE  168 (461)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      +.++.+...++.++++....+..+- ++|...|+       ++.                                    
T Consensus        70 ~~I~i~dse~v~raI~~~~~~~~Id-Lii~TpGG-------~v~------------------------------------  105 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIREAPKDKPID-LIIHTPGG-------LVD------------------------------------  105 (285)
T ss_pred             eeEcHhhHHHHHHHHHhcCCCCceE-EEEECCCC-------cHH------------------------------------
Confidence            6789999999999999998876654 44555442       211                                    


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534          169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~  235 (461)
                            ...++...|.+.+.|+++.|+.+|+.||.-+|++||-++|++.+.+|--+.++|-.|..+.
T Consensus       106 ------AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si  166 (285)
T PF01972_consen  106 ------AAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI  166 (285)
T ss_pred             ------HHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence                  1134555678899999999999999999999999999999999999999999999886543

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.09  E-value=0.00044  Score=75.35  Aligned_cols=139  Identities=12%  Similarity=0.047  Sum_probs=94.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .-+++++-++...+.++.++... +-+|-|.=.. ++++ |.+..+..                                
T Consensus       220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDTp-GA~p-G~~AEe~G--------------------------------  264 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTP-GAYA-DLKSEELG--------------------------------  264 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECC-CcCC-CchhHHHh--------------------------------
Confidence            45788888999999888887754 4444443332 3443 43333321                                


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  247 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~  247 (461)
                          ....+...+..+....+|+|++|-|.|.|||.-....||+++|.+++.|+.      +.|.++++ .|-+-..   
T Consensus       265 ----q~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAs-ILwkd~~---  330 (762)
T PLN03229        265 ----QGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAA-ILWKSAK---  330 (762)
T ss_pred             ----HHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHH-HHhcCcc---
Confidence                223344566678899999999999999988888888899999999887653      23444444 4433322   


Q ss_pred             HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          248 VGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      ++.+ +-..-.|+ |++.+++|+||+|+|.
T Consensus       331 ~A~e-AAe~lkiT-a~dL~~lGiiD~IIpE  358 (762)
T PLN03229        331 AAPK-AAEKLRIT-AQELCRLQIADGIIPE  358 (762)
T ss_pred             cHHH-HHHHcCCC-HHHHHhCCCCeeeccC
Confidence            3333 34456799 9999999999999973

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.02  E-value=6.2e-05  Score=76.11  Aligned_cols=139  Identities=17%  Similarity=0.122  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHH
Q 012534           96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTA  175 (461)
Q Consensus        96 ~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (461)
                      .+.+.+.|+.+..|+.+++|+|.=..|     |+...                                       -...
T Consensus        82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~---------------------------------------as~~  117 (317)
T COG0616          82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVV---------------------------------------ASEL  117 (317)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchh---------------------------------------HHHH
Confidence            556666788889999999998863221     11111                                       1122


Q ss_pred             HHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHH------------------
Q 012534          176 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY------------------  237 (461)
Q Consensus       176 ~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~------------------  237 (461)
                      +++.+.++..-. ||++.|+++|+-||..+|++||.+||++.+..|=--+..+ .|......                  
T Consensus       118 i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~-~~~~~~l~~k~Gv~~~~~~ag~~k~~  195 (317)
T COG0616         118 IARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISG-APNFEELLEKLGVEKEVITAGEYKDI  195 (317)
T ss_pred             HHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEe-cCCHHHHHHhcCCceeeeeccccccc
Confidence            233444555555 9999999999999999999999999999986654333333 12221111                  


Q ss_pred             ----------------------------HHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534          238 ----------------------------IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       238 ----------------------------~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                                                  .+..--+.......-+.+|+-++ +++|++.||||++...++..
T Consensus       196 ~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~-g~~A~~~gLVDelg~~~~av  266 (317)
T COG0616         196 LSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWT-GQQALELGLVDELGGLDDAV  266 (317)
T ss_pred             cCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceec-HHHhhhcCCchhcCCHHHHH
Confidence                                        00000011112234667899999 99999999999998654443

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.97  E-value=5.6e-05  Score=70.12  Aligned_cols=98  Identities=17%  Similarity=0.096  Sum_probs=67.0

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH---------------HHhc
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAK  241 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~---------------~L~r  241 (461)
                      +...|..++.|+++.+.|.|.+.|.-++++|+.  |++.+++.|.+.+...+......-..               .+..
T Consensus        66 i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~  145 (182)
T PF00574_consen   66 IYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAE  145 (182)
T ss_dssp             HHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            445678889999999999999999999999999  89999999999888655432111100               1111


Q ss_pred             CCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          242 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       242 lvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      .-|.. ..-.+++-...-++ |+||+++||||+|+..
T Consensus       146 ~tg~~~~~i~~~~~~~~~l~-a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  146 RTGLSKEEIEELMDRDTWLS-AEEALEYGIIDEIIES  181 (182)
T ss_dssp             HHTS-HHHHHHHCSSTEEEE-HHHHHHHTSSSEEESS
T ss_pred             HhCCcHHHHHHHHhCCcccc-HHHHHHcCCCCEeccC
Confidence            11321 13344444555677 9999999999999853

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.95  E-value=4.7e-05  Score=76.84  Aligned_cols=99  Identities=13%  Similarity=0.004  Sum_probs=67.1

Q ss_pred             HHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHH-----------------------
Q 012534          181 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-----------------------  237 (461)
Q Consensus       181 ~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~-----------------------  237 (461)
                      .++....||+|+.+++.|.-||..+|++||-+++.+.+.++.-.+-.. .|......                       
T Consensus       148 ~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~  226 (330)
T PRK11778        148 QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLFG  226 (330)
T ss_pred             HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence            346677899999999999999999999999999999886654433211 12221110                       


Q ss_pred             -------------------HHhcCC--CchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534          238 -------------------IAAKGP--GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       238 -------------------~L~rlv--G~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                                         .+...+  +++....+-+.+|+.+. |++|++.||||++...+++.
T Consensus       227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~-g~~Al~~GLVD~Ig~~dd~i  290 (330)
T PRK11778        227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWY-GQQALELGLVDEIQTSDDYL  290 (330)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcC-HHHHHHCCCCCcCCCHHHHH
Confidence                               000000  11001234456899999 99999999999998766654

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.94  E-value=0.00013  Score=68.73  Aligned_cols=98  Identities=15%  Similarity=-0.015  Sum_probs=65.9

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHH---------------HHHhc
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFS---------------YIAAK  241 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~---------------~~L~r  241 (461)
                      ++..|...+.||++.+.|.|.+.|.-|+++||-  |++.++++|.+....-|+.....-.               ..+..
T Consensus        73 I~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~  152 (197)
T PRK14512         73 IFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAK  152 (197)
T ss_pred             HHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566789999999999999999999999985  9999999886654432221111100               01111


Q ss_pred             CCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          242 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       242 lvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      .-|.. .....++-...-++ |+||+++||+|+|++.
T Consensus       153 ~tg~~~~~i~~~~~~d~~lt-a~EA~~yGliD~I~~~  188 (197)
T PRK14512        153 ETGQELDKVEKDTDRDFWLD-SSSAVKYGLVFEVVET  188 (197)
T ss_pred             HhCcCHHHHHHhhhcCcccC-HHHHHHcCCccEeecC
Confidence            22321 13344444556788 9999999999999964

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.85  E-value=0.00086  Score=66.11  Aligned_cols=153  Identities=16%  Similarity=0.097  Sum_probs=95.7

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCC
Q 012534           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD----PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVP  151 (461)
Q Consensus        76 ~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d----~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (461)
                      .|.++..+.--..-+++...-..+..+++.+.+|    ..+-+|.|.-+| ++     .+.+-...              
T Consensus        60 ~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-Ga-----RlqEg~~~--------------  119 (274)
T TIGR03133        60 PVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-GV-----RLQEANAG--------------  119 (274)
T ss_pred             EEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-Cc-----ChhhhHHH--------------
Confidence            3555666655556789888889999999998762    123456665444 23     22221100              


Q ss_pred             CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCc--cchhhhHhhhcCCeEEEcCCceEeccccccCC
Q 012534          152 LKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGL  229 (461)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~--a~GgG~~LalacD~ria~e~a~f~~pe~~lGl  229 (461)
                                       +. .+...+..+..+... .|+|++|-|+  |.||+..++..||++||++++++++.-..   
T Consensus       120 -----------------L~-~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~---  177 (274)
T TIGR03133       120 -----------------LI-AIAEIMRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPE---  177 (274)
T ss_pred             -----------------HH-HHHHHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHH---
Confidence                             00 111122233344444 9999999999  89999999999999999998877762211   


Q ss_pred             CCCchHHHHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCCC
Q 012534          230 FPDVGFSYIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN  279 (461)
Q Consensus       230 ~P~~G~~~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~  279 (461)
                              ..-...|.. -...+-.|.-+.+. +......|++|.+++++.
T Consensus       178 --------VIe~~~G~e~~~~~d~~l~~~~lG-G~~~~~sG~~D~~v~dd~  219 (274)
T TIGR03133       178 --------VIEQEAGVEEFDSRDRALVWRTTG-GKHRFLSGDADVLVEDDV  219 (274)
T ss_pred             --------HHHHhcCCCccCHHHhcccccccc-hHhHhhcccceEEeCCHH
Confidence                    112222310 02444455566677 678888999999998643

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.82  E-value=0.00023  Score=67.11  Aligned_cols=138  Identities=11%  Similarity=0.042  Sum_probs=92.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEE--EEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVL--IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vV--ltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .++.++..++...|-.++.++..+-|.  |-+.|       +|+..-                                 
T Consensus        38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG-------G~v~~g---------------------------------   77 (200)
T CHL00028         38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG-------GSVISG---------------------------------   77 (200)
T ss_pred             eecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------cchhhH---------------------------------
Confidence            389999999999999987544334333  34444       222211                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchHHH--------
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY--------  237 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~~~--------  237 (461)
                               ..++..|...+.||...+.|.|.+.|.-|++++|  -|++.++++|.+.....|+.-+- .+.        
T Consensus        78 ---------~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l  147 (200)
T CHL00028         78 ---------LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEEL  147 (200)
T ss_pred             ---------HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHH
Confidence                     2344567788999999999999999999999999  69999999988877655521111 111        


Q ss_pred             ---------HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534          238 ---------IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  278 (461)
Q Consensus       238 ---------~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~  278 (461)
                               .+...-|.. ....+++-...-++ |+||+++||||+|+.+.
T Consensus       148 ~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lt-a~EA~eyGliD~I~~~~  197 (200)
T CHL00028        148 LKLRETITRVYAQRTGKPLWVISEDMERDVFMS-ATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCC-HHHHHHcCCCcEEeecC
Confidence                     111122321 13344445556688 99999999999999654

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.78  E-value=0.00037  Score=65.38  Aligned_cols=137  Identities=15%  Similarity=0.054  Sum_probs=88.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .++..+...+...|..++.++..+-|+|  .+.|       +|+..-                                 
T Consensus        34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG-------G~v~~g---------------------------------   73 (191)
T TIGR00493        34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG-------GSITAG---------------------------------   73 (191)
T ss_pred             EEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CCHHHH---------------------------------
Confidence            3677888888888888886554444444  3333       343221                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCC---CCchH-H-----
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLF---PDVGF-S-----  236 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~---P~~G~-~-----  236 (461)
                               ..++..|..++.|+...+.|.|.+.|.-|++++|  .|++.++++|.+....-|..   -+..- .     
T Consensus        74 ---------~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~  144 (191)
T TIGR00493        74 ---------LAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILR  144 (191)
T ss_pred             ---------HHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHH
Confidence                     1233346666777888888999999999999776  59999999998866543321   11110 0     


Q ss_pred             ------HHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecC
Q 012534          237 ------YIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVP  276 (461)
Q Consensus       237 ------~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~  276 (461)
                            ..+.+.-|.. ....+++-.+.-++ |+||+++||||+++.
T Consensus       145 ~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lt-a~EA~~~GliD~ii~  190 (191)
T TIGR00493       145 LKGLLNDILANHTGQSLEQIEKDTERDFFMS-AEEAKEYGLIDSVLT  190 (191)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHhhCCccCc-HHHHHHcCCccEEec
Confidence                  0122223431 14455666677788 999999999999974

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.62  E-value=0.00093  Score=66.63  Aligned_cols=153  Identities=15%  Similarity=0.115  Sum_probs=93.1

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCC
Q 012534           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP----RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVP  151 (461)
Q Consensus        76 ~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~----~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (461)
                      .|.++..+.--..-+++......+..+++.+.++.    -+-+|+|.-+| ++     .+.+-..               
T Consensus        69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-Ga-----RlqEg~~---------------  127 (301)
T PRK07189         69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-GV-----RLQEANA---------------  127 (301)
T ss_pred             EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-Cc-----CccchHH---------------
Confidence            36666666655678899999999999999997765    24566665444 22     2222110               


Q ss_pred             CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCc--cchhhhHhhhcCCeEEEcCCceEeccccccCC
Q 012534          152 LKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGL  229 (461)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~--a~GgG~~LalacD~ria~e~a~f~~pe~~lGl  229 (461)
                                      .+. .+...+..+..+... +|+|++|-|.  |+||+..++.+||++||++++.+++.-..   
T Consensus       128 ----------------~L~-~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~---  186 (301)
T PRK07189        128 ----------------GLA-AIAEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPE---  186 (301)
T ss_pred             ----------------HHH-HHHHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHH---
Confidence                            000 111122233344555 9999999999  99999999999999999998877762211   


Q ss_pred             CCCchHHHHHhcCCCc-hHHHHHHhhcCCCCCcHHHHHHcCccceecCCCC
Q 012534          230 FPDVGFSYIAAKGPGG-GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN  279 (461)
Q Consensus       230 ~P~~G~~~~L~rlvG~-~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~  279 (461)
                              ..-...|. .-...+..+..+.+. +......|++|.+++++.
T Consensus       187 --------VIe~~~G~e~~d~~d~~~vw~~lG-G~h~~~sG~~D~~v~dd~  228 (301)
T PRK07189        187 --------VIEQEAGVEEFDSRDRALVWRTTG-GKHRYLSGLADALVDDDV  228 (301)
T ss_pred             --------HHHHhcCCcccCHHHhcccccccC-cceeeecccceEEeCCHH
Confidence                    11111221 002233333333343 344556899999998643

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.55  E-value=0.0011  Score=62.31  Aligned_cols=139  Identities=13%  Similarity=0.023  Sum_probs=89.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .++.++..++...|..++.+...+-|.|  -+.|       +|+..-                                 
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG-------G~v~~g---------------------------------   72 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG-------GSVYDG---------------------------------   72 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC-------cchhhH---------------------------------
Confidence            4888999999999999875443333333  4444       222221                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH--------
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY--------  237 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~--------  237 (461)
                               ..++..|..++-||...+.|.|.+.|.-|++++|-  |++.++++|.+....-|..-...-..        
T Consensus        73 ---------~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~  143 (196)
T PRK12551         73 ---------LGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILF  143 (196)
T ss_pred             ---------HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHH
Confidence                     12344567788899999999999999999999985  88999999887665433211110000        


Q ss_pred             -------HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534          238 -------IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  278 (461)
Q Consensus       238 -------~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~  278 (461)
                             .+.+.-|.. ....+++-...-++ |+||+++||||+|++..
T Consensus       144 ~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ms-a~EA~eyGliD~I~~~~  191 (196)
T PRK12551        144 LKERLNTELSERTGQPLERIQEDTDRDFFMS-PSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHhhcCcCCC-HHHHHHcCCCcEEeccC
Confidence                   112222321 12334444455677 99999999999999754

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.47  E-value=0.0017  Score=61.21  Aligned_cols=98  Identities=14%  Similarity=0.086  Sum_probs=68.4

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH-----------------HH
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-----------------IA  239 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~-----------------~L  239 (461)
                      ++..|...+-||...+.|.|.+.|.-|++++|-  |++.+++++-+.....|+.  +....                 .+
T Consensus        77 Iyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iy  154 (201)
T PRK14513         77 IYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIY  154 (201)
T ss_pred             HHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677888999999999999999999999995  9999999988866654431  11111                 11


Q ss_pred             hcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCCC
Q 012534          240 AKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN  279 (461)
Q Consensus       240 ~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~  279 (461)
                      .+.-|.. ..-.+++-...-++ |+||+++||||+|+++..
T Consensus       155 a~~Tg~~~~~I~~~~~rd~~ms-a~EA~eyGliD~I~~~~~  194 (201)
T PRK14513        155 HRHTDLPHEKLLRDMERDYFMS-PEEAKAYGLIDSVIEPTR  194 (201)
T ss_pred             HHHHCcCHHHHHHHhccCcccC-HHHHHHcCCCcEEeccCC
Confidence            2222321 02233444445677 999999999999997644

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.45  E-value=0.0016  Score=62.31  Aligned_cols=98  Identities=9%  Similarity=-0.034  Sum_probs=67.0

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH---------------HHhc
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAK  241 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~---------------~L~r  241 (461)
                      ++..|...+-||...+.|.|.+.|.-|++++|.  |++.++++|.+....-|......-..               .+.+
T Consensus       104 Iyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~  183 (221)
T PRK14514        104 IYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIAD  183 (221)
T ss_pred             HHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            344567788899999999999999999999996  89999999887665433321111000               1122


Q ss_pred             CCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          242 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       242 lvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      .-|.. ....+.+-...-++ |+||+++||||+|+..
T Consensus       184 ~TG~~~e~I~~~~~rd~wmt-A~EA~eyGliD~Vi~~  219 (221)
T PRK14514        184 HSGTPFDKVWADSDRDYWMT-AQEAKEYGMIDEVLIK  219 (221)
T ss_pred             HHCcCHHHHHHHhhcCccCC-HHHHHHcCCccEEeec
Confidence            22431 12334444556687 9999999999999863

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.31  E-value=0.0087  Score=59.51  Aligned_cols=151  Identities=17%  Similarity=0.179  Sum_probs=96.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |+++..|-.-..-+++....+.+.++++.+... .+-+|.|...| ++     -+.+-..                    
T Consensus       122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSg-Ga-----RmqEg~~--------------------  174 (285)
T TIGR00515       122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASG-GA-----RMQEALL--------------------  174 (285)
T ss_pred             EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----ccccchh--------------------
Confidence            444444444456789999999999999998765 46677776655 33     1111000                    


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhH-hhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~-LalacD~ria~e~a~f~~pe~~lGl~P~~G~  235 (461)
                                 .+. ........+.++.....|.|+++-|+|.||+.. +++.+|++||.++|.+++--.+         
T Consensus       175 -----------sL~-~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr---------  233 (285)
T TIGR00515       175 -----------SLM-QMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR---------  233 (285)
T ss_pred             -----------HHH-hHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH---------
Confidence                       000 111222234456667899999999999999654 5679999999999988773332         


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHH
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKE  285 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~  285 (461)
                        .+...+|..       +. +.+.+|+-+.+.|+||.||++.++.....
T Consensus       234 --Vie~ti~e~-------lp-e~~q~ae~~~~~G~vD~iv~~~~~r~~l~  273 (285)
T TIGR00515       234 --VIEQTVREK-------LP-EGFQTSEFLLEHGAIDMIVHRPEMKKTLA  273 (285)
T ss_pred             --HHHHHhcCc-------cc-hhcCCHHHHHhCCCCcEEECcHHHHHHHH
Confidence              112222221       12 22433666888999999999988765333

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.30  E-value=0.011  Score=58.94  Aligned_cols=152  Identities=16%  Similarity=0.121  Sum_probs=95.6

Q ss_pred             cCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCC
Q 012534           74 PNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPL  152 (461)
Q Consensus        74 ~~~V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (461)
                      +|.-..|.-|.|. ..-+++....+.+.++++.+... .+-+|.|.-.| ++     .+.+-..                
T Consensus       119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-Ga-----rmqEgi~----------------  175 (292)
T PRK05654        119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-GA-----RMQEGLL----------------  175 (292)
T ss_pred             CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----chhhhhh----------------
Confidence            4433344445554 56889999999999999999876 46677776554 22     2221000                


Q ss_pred             CCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhH-hhhcCCeEEEcCCceEeccccccCCCC
Q 012534          153 KCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFP  231 (461)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~-LalacD~ria~e~a~f~~pe~~lGl~P  231 (461)
                                     .+. ........+.++.....|.|+++-|+|.||+.. .++.+|++||.++|.+++--.+     
T Consensus       176 ---------------sL~-~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----  234 (292)
T PRK05654        176 ---------------SLM-QMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----  234 (292)
T ss_pred             ---------------HHH-hHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----
Confidence                           001 112222344456667899999999999999655 5677999999998887763221     


Q ss_pred             CchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHH
Q 012534          232 DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSL  283 (461)
Q Consensus       232 ~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~  283 (461)
                            .+...+|.     ++  . +.+.+++-+.+.|+||.||++.++...
T Consensus       235 ------vie~~~~e-----~l--p-e~~~~ae~~~~~G~vD~Vv~~~e~r~~  272 (292)
T PRK05654        235 ------VIEQTVRE-----KL--P-EGFQRAEFLLEHGAIDMIVHRRELRDT  272 (292)
T ss_pred             ------HHHhhhhh-----hh--h-hhhcCHHHHHhCCCCcEEECHHHHHHH
Confidence                  11111121     11  1 224337778899999999999887653

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.24  E-value=0.016  Score=56.21  Aligned_cols=158  Identities=11%  Similarity=0.058  Sum_probs=94.2

Q ss_pred             CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCC
Q 012534           75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLK  153 (461)
Q Consensus        75 ~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~-~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (461)
                      |.-..|.=|.|..  .++.+-...+...+... +++..+-+|.|.=..  .|-.|..-.+...                 
T Consensus        31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp--G~~~g~~aE~~G~-----------------   89 (238)
T TIGR03134        31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP--SQAYGRREELLGI-----------------   89 (238)
T ss_pred             CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCCHHHHHHHH-----------------
Confidence            4333344455543  78888888888888885 455666666665542  3555544333221                 


Q ss_pred             CCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh-cCCeEEEcCCceEeccccccCCCCC
Q 012534          154 CGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG-HGRYRIVTEKTLLAMPENGIGLFPD  232 (461)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal-acD~ria~e~a~f~~pe~~lGl~P~  232 (461)
                                      ..........+......+.|+|+.|-|.++|||+.-.. .+|.++|-+++.       ++..+.
T Consensus        90 ----------------~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~-------i~vm~~  146 (238)
T TIGR03134        90 ----------------NQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAM-------VHVMDL  146 (238)
T ss_pred             ----------------HHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcE-------EEecCH
Confidence                            11222222333344566699999999999988765543 477776665554       455555


Q ss_pred             chHHHHHhcCCCchHHHHHHhhcCC--CCCcHHHHHHcCccceecCCCCh
Q 012534          233 VGFSYIAAKGPGGGSVGAYLGMTGK--RISTPSDALFAGLGTDYVPSGNL  280 (461)
Q Consensus       233 ~G~~~~L~rlvG~~~~a~~l~LtG~--~i~~A~eA~~~GLv~~vv~~~~l  280 (461)
                      -|++..+-+-.   +...++.-+=.  ..+ ...+.+.|+||.|+++.+-
T Consensus       147 e~aa~I~~~~~---~~~~e~a~~~~~~a~~-~~~~~~~G~vd~vi~~~~~  192 (238)
T TIGR03134       147 ESMARVTKRSV---EELEALAKSSPVFAPG-IENFVKLGGVHALLDVADA  192 (238)
T ss_pred             HHHHHHHccCH---hHHHHHHHhhhhhccC-HHHHHhCCCccEEeCCCCc
Confidence            55554444333   24444433322  344 6789999999999986664

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.12  E-value=0.0003  Score=63.57  Aligned_cols=99  Identities=12%  Similarity=0.067  Sum_probs=59.9

Q ss_pred             HhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc------------cCC---------CCCch-----HH
Q 012534          183 ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGL---------FPDVG-----FS  236 (461)
Q Consensus       183 l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~------------lGl---------~P~~G-----~~  236 (461)
                      ..+..|||||.++|.|..+|+-|+.+||-+++.+.+.++..-+.            +|+         .-..+     .+
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            34679999999999999999999999999999998866554333            222         11111     00


Q ss_pred             H----HHh-----------cCC----CchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          237 Y----IAA-----------KGP----GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       237 ~----~L~-----------rlv----G~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      -    .+.           ..|    |......+-++.|..++ |++|++.||||++-..+++..
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~-~~~A~~~GLiD~i~~~~~~~~  145 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFT-AQQALELGLIDEIGTFDEAIA  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEE-HHHHHHTTSSSEETSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhcccc-HHHHHHcCchhhcCCHHHHHH
Confidence            0    000           000    11101122356899998 999999999999986655543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.07  E-value=0.015  Score=57.77  Aligned_cols=152  Identities=16%  Similarity=0.119  Sum_probs=93.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |+++..+--=..-++....-+.+.++++.+.... +-+|+|..+| ++     -+.+-..                    
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG-GA-----RmQEg~~--------------------  187 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG-GA-----RMQEGSL--------------------  187 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-Cc-----cccccch--------------------
Confidence            5555555444567899999999999999997754 5677776655 22     2221100                    


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHH-HhhCCCcEEEEeCCccchhhhHh-hhcCCeEEEcCCceEeccccccCCCCCch
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICK-ISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVG  234 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~kPvIAavnG~a~GgG~~L-alacD~ria~e~a~f~~pe~~lGl~P~~G  234 (461)
                                 .+..+.. ....+.. ...-..|.|+++.|+|.||+... ++.||++|+.+++.+++.-.+        
T Consensus       188 -----------sL~qmak-~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr--------  247 (296)
T CHL00174        188 -----------SLMQMAK-ISSALYDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR--------  247 (296)
T ss_pred             -----------hhhhhHH-HHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH--------
Confidence                       0001111 1111122 22456999999999999998776 566999999888876653221        


Q ss_pred             HHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHH
Q 012534          235 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEA  286 (461)
Q Consensus       235 ~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~a  286 (461)
                         .....+|..       +. +.|-+|+-.++.|+||.+|+..++......
T Consensus       248 ---VIe~t~ge~-------lp-e~fq~ae~l~~~G~vD~iV~r~~lr~~l~~  288 (296)
T CHL00174        248 ---VIEQTLNKT-------VP-EGSQAAEYLFDKGLFDLIVPRNLLKGVLSE  288 (296)
T ss_pred             ---HHHHhcCCc-------CC-cccccHHHHHhCcCceEEEcHHHHHHHHHH
Confidence               111122221       22 224447778899999999998777654333

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=96.98  E-value=0.0091  Score=65.39  Aligned_cols=85  Identities=12%  Similarity=0.059  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHH
Q 012534           94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVF  173 (461)
Q Consensus        94 ~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      -.+.++.++|+.+..|+.|++|||.-.+.    .|+++..+.                                      
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~~~~--------------------------------------  113 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSPHLV--------------------------------------  113 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHHHHH--------------------------------------
Confidence            35779999999999999999999986531    133333221                                      


Q ss_pred             HHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          174 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       174 ~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                       .+++.+..+....|||||..++++ -+|.-||.+||-+++.+.+.+++
T Consensus       114 -ei~~ai~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       114 -EIGSALSEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             -HHHHHHHHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEe
Confidence             122334445667899999998876 68999999999999999877644

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.014  Score=60.47  Aligned_cols=147  Identities=15%  Similarity=0.097  Sum_probs=105.1

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE--ecCCCccccCCChhhHHHHhhhcCCCCCCCCCC
Q 012534           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVP  151 (461)
Q Consensus        74 ~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVlt--g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (461)
                      ++.|..|.++     +++++.+.+.+.+.++.++++.. -+|||.  -.|+                             
T Consensus        25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG-----------------------------   69 (436)
T COG1030          25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTPGG-----------------------------   69 (436)
T ss_pred             CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc-----------------------------
Confidence            4567777775     46999999999999999998763 344443  3331                             


Q ss_pred             CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeC---CccchhhhHhhhcCCeEEEcCCceEeccccccC
Q 012534          152 LKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG  228 (461)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavn---G~a~GgG~~LalacD~ria~e~a~f~~pe~~lG  228 (461)
                                          ....+.++++.|.+.+.||+..|.   ++|.-+|.-++++||+..|.+.+.++--..-.+
T Consensus        70 --------------------l~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~  129 (436)
T COG1030          70 --------------------LLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAG  129 (436)
T ss_pred             --------------------hHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecC
Confidence                                334455678889999999888875   359999999999999999999999887554322


Q ss_pred             C--CCC-ch-HHH------HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecC
Q 012534          229 L--FPD-VG-FSY------IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVP  276 (461)
Q Consensus       229 l--~P~-~G-~~~------~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~  276 (461)
                      -  .+. .. ...      -+.+.-|+. ..|.+++-....++ ++||++.|++|-+..
T Consensus       130 ~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~-a~eA~~~~vid~iA~  187 (436)
T COG1030         130 GGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLT-AEEALRQGVIDLIAR  187 (436)
T ss_pred             CCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCC-hhHHHhcCccccccC
Confidence            2  111 11 111      123333432 15677888889999 999999999998874

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.81  E-value=0.036  Score=59.70  Aligned_cols=156  Identities=13%  Similarity=0.122  Sum_probs=96.7

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcc
Q 012534           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVK  158 (461)
Q Consensus        80 ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (461)
                      |.=|+|. ..-+++..-.+...++++.+.+. .+-+|.|.-.+  .|..|.+-..                         
T Consensus       319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~--G~~~g~~~E~-------------------------  370 (512)
T TIGR01117       319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVP--GFLPGVNQEY-------------------------  370 (512)
T ss_pred             EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCc--CccccHHHHH-------------------------
Confidence            3345553 34579999999999999988764 46666666553  2655543221                         


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh----cCCeEEEcCCceEeccccccCCCCCch
Q 012534          159 EISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVG  234 (461)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal----acD~ria~e~a~f~~pe~~lGl~P~~G  234 (461)
                                 ...+.....++.++.....|.|+.|-|.+.|||..-+.    .+|+++|.+++.++.       .++-+
T Consensus       371 -----------~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~  432 (512)
T TIGR01117       371 -----------GGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAG  432 (512)
T ss_pred             -----------HHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHH
Confidence                       01334445667778889999999999999888554432    288888877776654       33333


Q ss_pred             HHHHH-hcCCC---chHHHHH--Hh-hcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          235 FSYIA-AKGPG---GGSVGAY--LG-MTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       235 ~~~~L-~rlvG---~~~~a~~--l~-LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      +...+ .+.+.   ....+..  +. +.-+..+ +..+.+.|+||.|+++.++..
T Consensus       433 a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~g~vD~VI~P~~tR~  486 (512)
T TIGR01117       433 AANIIFRKDIKEAKDPAATRKQKIAEYREEFAN-PYKAAARGYVDDVIEPKQTRP  486 (512)
T ss_pred             HHHHHhhhhcccccCHHHHHHHHHHHHHHhhcC-HHHHHhcCCCCeeEChHHHHH
Confidence            33222 22111   0001111  11 1223446 889999999999999988754

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.71  E-value=0.028  Score=53.80  Aligned_cols=96  Identities=17%  Similarity=0.083  Sum_probs=64.8

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH-----------------HH
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-----------------IA  239 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~-----------------~L  239 (461)
                      ++..|...+-||...+-|.|.+.|.-|++++|-  |++.++++|-+.....|..  +-.+-                 .+
T Consensus        99 IyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iy  176 (222)
T PRK12552         99 ICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEIL  176 (222)
T ss_pred             HHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567778899999999999999999999995  9999999988766654431  11111                 11


Q ss_pred             hcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          240 AKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       240 ~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      ...-|.. ..-.+++-...-++ |+||+++||||+|+.+
T Consensus       177 a~~TG~~~e~I~~d~~rd~wms-A~EA~eyGliD~Ii~~  214 (222)
T PRK12552        177 SRNTGQTVEKLSKDTDRMFYLT-PQEAKEYGLIDRVLES  214 (222)
T ss_pred             HHHHCCCHHHHHHHhcCCCcCC-HHHHHHcCCCcEEecc
Confidence            1112221 01122222334577 9999999999999965

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.61  E-value=0.022  Score=53.44  Aligned_cols=99  Identities=14%  Similarity=0.072  Sum_probs=63.2

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeE--EEcCCceEeccccccCCCCCchHHH----------------HHh
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYR--IVTEKTLLAMPENGIGLFPDVGFSY----------------IAA  240 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~r--ia~e~a~f~~pe~~lGl~P~~G~~~----------------~L~  240 (461)
                      .+..|...+.||...+-|.|...|.-|++++|..  ++.+++++-..-.. |.+-+...=.                .+.
T Consensus        77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a  155 (200)
T COG0740          77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYA  155 (200)
T ss_pred             HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445777899999999999999999999999874  77777776554443 3221111000                111


Q ss_pred             cCCCchHHH--HHHhhcCCCCCcHHHHHHcCccceecCCCCh
Q 012534          241 KGPGGGSVG--AYLGMTGKRISTPSDALFAGLGTDYVPSGNL  280 (461)
Q Consensus       241 rlvG~~~~a--~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l  280 (461)
                      ..-|.. .-  ...+-...-++ |+||+++||+|+|+...+.
T Consensus       156 ~~TGq~-~e~i~~d~drd~~ms-a~eA~~yGLiD~V~~~~~~  195 (200)
T COG0740         156 EHTGQT-LEKIEKDTDRDTWMS-AEEAKEYGLIDKVIESREA  195 (200)
T ss_pred             HHcCCC-HHHHHHhhcccccCC-HHHHHHcCCcceecccccc
Confidence            122322 11  11222344678 9999999999999976543

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.10  E-value=0.064  Score=57.68  Aligned_cols=141  Identities=18%  Similarity=0.182  Sum_probs=92.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+.--...+++......+..+++.+..+. +-+|.|.-.| ++|  + ++.+.....                  
T Consensus        59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~dsg-Ga~--~-r~~eg~~~l------------------  115 (493)
T PF01039_consen   59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDSG-GAF--L-RMQEGVESL------------------  115 (493)
T ss_dssp             EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEES-SBC--G-GGGGHHHHH------------------
T ss_pred             EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecccc-ccc--c-ccchhhhhh------------------
Confidence            4444445555678899999999999999998764 4455554433 221  1 455433211                  


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~~lGl~P~~G~  235 (461)
                                   . .+...+..+..+.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++.            
T Consensus       116 -------------~-~~g~i~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~------------  168 (493)
T PF01039_consen  116 -------------M-GMGRIFRAIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA------------  168 (493)
T ss_dssp             -------------H-HHHHHHHHHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS------------
T ss_pred             -------------h-hhHHHHHHHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec------------
Confidence                         0 12223333445666 9999999999999999999999999999987 776542            


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHH-------HHcCccceecCCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDA-------LFAGLGTDYVPSGN  279 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA-------~~~GLv~~vv~~~~  279 (461)
                              |+  ...+ ..+|+.++ .++.       ...|++|.++++++
T Consensus       169 --------GP--~vv~-~~~Ge~~~-~~~lgG~~~h~~~sG~~d~v~~de~  207 (493)
T PF01039_consen  169 --------GP--RVVE-SATGEEVD-SEELGGADVHAAKSGVVDYVVDDEE  207 (493)
T ss_dssp             --------TH--HHHH-HHHSSCTS-HHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred             --------cc--cccc-cccCcccc-chhhhhhhhhcccCCCceEEEechH
Confidence                    21  1112 24467777 5542       46899999998653

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=96.10  E-value=0.031  Score=54.87  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=67.1

Q ss_pred             HHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCC
Q 012534          178 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  257 (461)
Q Consensus       178 ~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~  257 (461)
                      .-+..+.++++|+||.|=|---+||+-=...+|.+.|-++++|+.      +.|.+.++..|..-    +++.+. -...
T Consensus       179 ~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~----~ka~eA-Ae~m  247 (317)
T COG0825         179 RNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA----SKAKEA-AEAM  247 (317)
T ss_pred             HHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh----hhhHHH-HHHc
Confidence            344568899999999999987777766666789999999999985      55666666555332    355554 3445


Q ss_pred             CCCcHHHHHHcCccceecCC
Q 012534          258 RISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       258 ~i~~A~eA~~~GLv~~vv~~  277 (461)
                      .|+ |++.+++||||.|+|.
T Consensus       248 kit-a~dLk~lgiID~II~E  266 (317)
T COG0825         248 KIT-AHDLKELGIIDGIIPE  266 (317)
T ss_pred             CCC-HHHHHhCCCcceeccC
Confidence            798 9999999999999973

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.10  E-value=0.086  Score=57.40  Aligned_cols=110  Identities=12%  Similarity=0.043  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++.-+.-=+..+++....+.+.++++.+.+.. +-+|.|.-.| +++-.+ ....+..                    
T Consensus       131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSg-Garl~~-q~e~~~~--------------------  187 (569)
T PLN02820        131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSG-GANLPR-QAEVFPD--------------------  187 (569)
T ss_pred             EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcCCcc-cccccch--------------------
Confidence            4444444334568999999999999999988764 5566665444 333211 0000000                    


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEec
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAM  222 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~  222 (461)
                                   ...+...+.....+.....|.|++|-|.|.|||..+..+||++|+++. +.+++
T Consensus       188 -------------~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~  241 (569)
T PLN02820        188 -------------RDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL  241 (569)
T ss_pred             -------------HhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence                         001112222233455667999999999999999999999999999874 54544

>PRK10949 protease 4; Provisional

Probab=95.77  E-value=0.13  Score=56.75  Aligned_cols=85  Identities=7%  Similarity=0.072  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHH
Q 012534           94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVF  173 (461)
Q Consensus        94 ~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      -.+.++.++|+.+..|+.|++|||.-.++.    |..+..+                                       
T Consensus        95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a~~---------------------------------------  131 (618)
T PRK10949         95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQPSM---------------------------------------  131 (618)
T ss_pred             ccHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHHHH---------------------------------------
Confidence            345689999999999999999999876421    2222111                                       


Q ss_pred             HHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          174 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       174 ~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                      ..+.+.+..+....|||||..+.++ -+|.-||.+||-+++.+.+.+++
T Consensus       132 ~eI~~ai~~fk~sGKpVvA~~~~~~-s~~YyLASaAD~I~l~P~G~v~~  179 (618)
T PRK10949        132 QYIGKALREFRDSGKPVYAVGDSYS-QGQYYLASFANKIYLSPQGVVDL  179 (618)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecCcc-chhhhhhhhCCEEEECCCceEEE
Confidence            1122334445667899999755554 67999999999999988755443

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.69  E-value=0.11  Score=56.10  Aligned_cols=143  Identities=15%  Similarity=0.069  Sum_probs=82.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+--=..-+++....+.+..+++.+.++. +-+|.|.-+| +++     +.+-...                   
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-Gar-----m~eg~~~-------------------  137 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-GAR-----IQEAVDA-------------------  137 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-CCC-----ccccchh-------------------
Confidence            4444444433567899999999999999998765 4455554443 232     2110000                   


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCc-eEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT-LLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a-~f~~pe~~lGl~P~~G~  235 (461)
                                  +..+ ...+... ....-..|.|++|-|.|.||+......|||+|+++++ .+++.           |
T Consensus       138 ------------l~~~-~~~~~~~-~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------G  192 (512)
T TIGR01117       138 ------------LKGY-GDIFYRN-TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------G  192 (512)
T ss_pred             ------------hhhH-HHHHHHH-HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------C
Confidence                        0001 1111111 1223458999999999999998888899999999964 34431           1


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHHH--HcCccceecCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDAL--FAGLGTDYVPSG  278 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~--~~GLv~~vv~~~  278 (461)
                      ...+....|..       ++.+.+. +.+.+  .-|++|.+++++
T Consensus       193 P~vv~~~~Ge~-------v~~e~lG-Ga~~h~~~sGv~d~~~~de  229 (512)
T TIGR01117       193 PQVIKTVTGEE-------VTAEQLG-GAMAHNSVSGVAHFIAEDD  229 (512)
T ss_pred             hHHHHhhcCcc-------cchhhcc-hHHHhccccceeEEecCCh
Confidence            11112222322       2334444 34443  589999998754

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=95.42  E-value=0.59  Score=45.79  Aligned_cols=148  Identities=18%  Similarity=0.165  Sum_probs=98.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |+...++--=-.-+|..-.-+.+..+++.+-.+. +.+|+++.+|+      +-+.|-.-                    
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSGG------ARMQEg~l--------------------  176 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASGG------ARMQEGIL--------------------  176 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCcc------hhHhHHHH--------------------
Confidence            5556665544456788888899999999987764 78999988873      22222110                    


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchh-hhHhhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGF-GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~Gg-G~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~  235 (461)
                                 .++++ ......+.++.....|+|+.+..+..|| -+.+++..|+.||-++|.+|+.-.++        
T Consensus       177 -----------SLMQM-aktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV--------  236 (294)
T COG0777         177 -----------SLMQM-AKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV--------  236 (294)
T ss_pred             -----------HHHHH-HHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh--------
Confidence                       01111 1223455667888999999999999988 67899999999998888776654331        


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                         +-..+|      +-+--|  +..++-.++.|+||.||+..++..
T Consensus       237 ---IEQTir------e~LPeg--fQ~aEfLlehG~iD~iv~R~elr~  272 (294)
T COG0777         237 ---IEQTIR------EKLPEG--FQTAEFLLEHGMIDMIVHRDELRT  272 (294)
T ss_pred             ---hhhhhc------ccCCcc--hhhHHHHHHcCCceeeecHHHHHH
Confidence               111111      112222  323788899999999999877654

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=92.72  E-value=0.17  Score=52.82  Aligned_cols=68  Identities=12%  Similarity=0.105  Sum_probs=53.3

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhh---hcCCCCCCCCCC
Q 012534          358 EALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAV---LVDKDQNPKWNP  434 (461)
Q Consensus       358 ~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~af---l~~K~r~P~w~~  434 (461)
                      +.+++++..+|.++..+|+.++...          ......+..+......++.++|+.|++.+|   + +| +.|.|--
T Consensus       228 ~~~~~i~~~~p~av~~~k~~~~~~~----------~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~-~k-r~~~wa~  295 (401)
T PLN02157        228 EQLKKLLTDDPSVVESCLEKCAEVA----------HPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEA-GR-RKDTWCI  295 (401)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccc----------CCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhh-cc-cchHHHH
Confidence            4445788899999999999987532          234567777888888999999999999999   6 56 6788865


Q ss_pred             CCc
Q 012534          435 ASL  437 (461)
Q Consensus       435 ~~~  437 (461)
                      ..+
T Consensus       296 ~~~  298 (401)
T PLN02157        296 TTL  298 (401)
T ss_pred             HHH
Confidence            544

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=91.39  E-value=0.67  Score=49.67  Aligned_cols=102  Identities=16%  Similarity=0.046  Sum_probs=67.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      +..+.-+-+.+.-++..-....+..+.+.+.++....+.+..+.|       +.+.+-...                   
T Consensus        93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG-------ari~~~v~~-------------------  146 (526)
T COG4799          93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG-------ARIQEGVPS-------------------  146 (526)
T ss_pred             EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc-------cccccCccc-------------------
Confidence            333333455677888888888899988888876554555555544       222221000                   


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCc
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT  218 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a  218 (461)
                                   .+.+...+....++... +|.|++|-|.|.|||.-+...||++|+.++.
T Consensus       147 -------------l~g~g~iF~~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         147 -------------LAGYGRIFYRNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             -------------cccchHHHHHHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence                         00222333333445555 9999999999999999999999999999985

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=90.68  E-value=3.6  Score=45.06  Aligned_cols=146  Identities=12%  Similarity=0.129  Sum_probs=93.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE  168 (461)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      -+++.+-.+...+.++..+. -++-+|.|.-..  .|..|.+-..-                                  
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p--Gf~~G~~~E~~----------------------------------  422 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT--GFMVGSRSEAS----------------------------------  422 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC--CCCCCHHHHHh----------------------------------
Confidence            46888888888888888876 456777776542  47666544431                                  


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh----cCCeEEEcCCceEeccccccCCCCCchHHHHHhcC-C
Q 012534          169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P  243 (461)
Q Consensus       169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal----acD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rl-v  243 (461)
                        ...+...+++.++.....|.|++|=|.|+|+|..-+.    ..|++++.       |...+|..+.-|+...+.+. +
T Consensus       423 --G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~aw-------p~A~i~vmg~e~aa~il~~~e~  493 (569)
T PLN02820        423 --GIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMW-------PNARIGVMGGAQAAGVLAQIER  493 (569)
T ss_pred             --hHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEEC-------CCCeEEecCHHHHHHHHHHHHh
Confidence              1445556788889999999999999999998765553    44565555       45555665555555544321 1


Q ss_pred             ------C----chHH-H-HH-H-hhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534          244 ------G----GGSV-G-AY-L-GMTGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       244 ------G----~~~~-a-~~-l-~LtG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                            |    .... + ++ + -..-+..+ +..|-..|++|.|+++.+.-
T Consensus       494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~aa~~~~vD~VIdP~dTR  544 (569)
T PLN02820        494 ENKKRQGIQWSKEEEEAFKAKTVEAYEREAN-PYYSTARLWDDGVIDPADTR  544 (569)
T ss_pred             hhhhhccccCCccHHHHHHHHHHHHHHHhCC-HHHHHHcCCcCcccCHHHHH
Confidence                  1    0001 0 01 1 11122445 77888999999999987654

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=86.53  E-value=3.3  Score=44.64  Aligned_cols=162  Identities=15%  Similarity=0.147  Sum_probs=92.7

Q ss_pred             cCcEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCC
Q 012534           74 PNGVAVITLDRPKALN-AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPL  152 (461)
Q Consensus        74 ~~~V~~ItLnrP~~~N-al~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (461)
                      .|.-.-|.=|+|.... +++.+-.....+.+...+. -++-+|.|.-.  ..|..|-.-..-                  
T Consensus       292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt--pGf~~g~~~E~~------------------  350 (493)
T PF01039_consen  292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT--PGFMPGPEAERA------------------  350 (493)
T ss_dssp             TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE--CEB--SHHHHHT------------------
T ss_pred             CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec--ccccccchhhhc------------------
Confidence            3333334446665322 7999999999999998887 45777777655  246555432210                  


Q ss_pred             CCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcC----CeEEEcCCceEeccccccC
Q 012534          153 KCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHG----RYRIVTEKTLLAMPENGIG  228 (461)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lalac----D~ria~e~a~f~~pe~~lG  228 (461)
                                        ......-+++.++..+..|+|..|=|.+.|||.......    |+++|.++++       +|
T Consensus       351 ------------------g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~-------~~  405 (493)
T PF01039_consen  351 ------------------GIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAE-------IG  405 (493)
T ss_dssp             ------------------THHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-E-------EE
T ss_pred             ------------------chHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcce-------ee
Confidence                              155566678889999999999999999999877444444    5665555555       45


Q ss_pred             CCCCchHHHHHhc-CC------Cc--hH-HHHHHhhcCC-CCCcHHHHHHcCccceecCCCChHH
Q 012534          229 LFPDVGFSYIAAK-GP------GG--GS-VGAYLGMTGK-RISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       229 l~P~~G~~~~L~r-lv------G~--~~-~a~~l~LtG~-~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      +.++-|+...+-+ ..      |.  .. ....+--.-+ ..+ +..+...|++|.++++.+...
T Consensus       406 vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~D~ii~p~~tR~  469 (493)
T PF01039_consen  406 VMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSS-PYRAASRGYVDDIIDPAETRK  469 (493)
T ss_dssp             SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSS-HHHHHHTTSSSEESSGGGHHH
T ss_pred             ecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCC-HHHHHhcCCCCCccCHHHHHH
Confidence            5544444333221 10      10  00 0111111111 245 889999999999999887653

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.26  E-value=5.2  Score=38.92  Aligned_cols=133  Identities=14%  Similarity=0.059  Sum_probs=74.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEM  169 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      .++.++.+.+...|-.++.+++-|-|.+.=.+     -|+++..-                                   
T Consensus       100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINS-----PGG~vtag-----------------------------------  139 (275)
T KOG0840|consen  100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINS-----PGGSVTAG-----------------------------------  139 (275)
T ss_pred             cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeC-----CCCccchh-----------------------------------
Confidence            47888888888888888776666766664322     23333211                                   


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHHH
Q 012534          170 IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  249 (461)
Q Consensus       170 ~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a  249 (461)
                             ...+..+.-++-||-...=|.|.+-|.-|..+     .+..-+|++|..++=+.-+.|+..  .......-.+
T Consensus       140 -------lAIYDtMq~ik~~V~Tic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~--Gqa~Di~i~a  205 (275)
T KOG0840|consen  140 -------LAIYDTMQYIKPDVSTICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAG--GQATDIVIQA  205 (275)
T ss_pred             -------hhHHHHHHhhCCCceeeehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcC--ccchHHHHHH
Confidence                   11223344455565555556666555444432     345667888888876642222221  0000000122


Q ss_pred             HHHhh------------cC-------------CCCCcHHHHHHcCccceecCC
Q 012534          250 AYLGM------------TG-------------KRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       250 ~~l~L------------tG-------------~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      +|++.            ||             +-++ |+||++.||+|.|++.
T Consensus       206 kE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fms-a~EA~eyGliD~v~~~  257 (275)
T KOG0840|consen  206 KELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMS-AEEAKEYGLIDKVIDH  257 (275)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCC-HHHHHHhcchhhhhcC
Confidence            22221            44             3577 9999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	461
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		3e-54
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		1e-46
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		8e-45
3ju1_A	407	Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F		1e-34
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		2e-10
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		8e-10
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		1e-09
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		2e-09
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		3e-09
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		3e-09
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		3e-09
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		5e-09
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		5e-09
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		1e-08
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		2e-08
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		2e-08
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		2e-08
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		2e-08
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		4e-08
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		5e-08
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		5e-08
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		7e-08
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		2e-07
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		6e-07
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-06
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-06
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		1e-06
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		2e-06
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		4e-06
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		4e-06
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		7e-06
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		8e-06
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		8e-06
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-05
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-05
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		2e-05
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		2e-05
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		3e-05
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		3e-05
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		4e-05
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		6e-05
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		9e-05
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-04
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-04
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		3e-04
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		4e-04
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		4e-04
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		4e-04
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		4e-04
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		4e-04
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		4e-04
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		4e-04
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		4e-04
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		7e-04
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		7e-04
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		7e-04
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		8e-04
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		8e-04

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score =  209 bits (532), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 211/395 (53%), Gaps = 52/395 (13%)
Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           AEE + G     GV  ITL+RPK LNA+ L+   +    L +WE DP    ++I+G+G +
Sbjct: 5   AEEVLLGKKGCTGV--ITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 124 AFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKI 183
           AFCAG DI+ V++E +K +   + P                        F  EY L   +
Sbjct: 63  AFCAGGDIR-VISEAEKAKQK-IAPVF----------------------FREEYXLNNAV 98
Query: 184 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 243
              +KPY++L+ G+T G G+G+S HG++R+ TEK L A PE  IGLFPDVG  Y   +  
Sbjct: 99  GSCQKPYVALIHGITXGGGVGLSVHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQ 158
Query: 244 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303
             G +G +L +TG R+    D   AG+ T +V S  L  L+E LLA+       ++I ++
Sbjct: 159 --GKLGYFLALTGFRLKG-RDVYRAGIATHFVDSEKLAXLEEDLLAL--KSPSKENIASV 213
Query: 304 LAKYSSDPEGEAPLKLLLPQ----ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEA 359
           L  Y ++ + +     +L +    I SCFS+  +V +IIE L++  SS       +A E 
Sbjct: 214 LENYHTESKIDRDKSFILEEHXDKINSCFSA-NTVEEIIENLQQDGSS-------FALEQ 265
Query: 360 LQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGV 419
           L+ + K +P SL +T +   + +S           L  V+  EYR++       DF EGV
Sbjct: 266 LKVINKXSPTSLKITLRQLXEGSS---------KTLQEVLTXEYRLSQACXRGHDFHEGV 316
Query: 420 RAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT 454
           RAVL+DKDQ+PKW PA L+EV + ++   F+ LG+
Sbjct: 317 RAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLGS 351

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 189/377 (50%), Gaps = 52/377 (13%)
Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GV ++TL+RPKA+N++   M       L  WE+D  V+ VL+ G+G R  CAG D+  + 
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
              + D                         +E    +  EY L   I  Y KPY+S+MD
Sbjct: 78  HSAKADG------------------------AEARRFWFDEYRLNAHIGRYPKPYVSIMD 113
Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 255
           G+ MG G+G+  HG  R+VT+ T +AMPE GIG  PDVG +Y+ ++ P  G +G +  +T
Sbjct: 114 GIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAP--GKLGLHAALT 171
Query: 256 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA 315
           G   S  +DA+  G    YVP   +     A++A          + A LA ++ +P   +
Sbjct: 172 GAPFSG-ADAIVMGFADHYVPHDKIDEFTRAVIA--------DGVDAALAAHAQEPPA-S 221
Query: 316 PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQ 375
           PL      I  C++ + +V  II  L+ H + A       A EA   +   +P +L +T 
Sbjct: 222 PLAEQRSWIDECYTGD-TVADIIAALRAHDAPA-------AGEAADLIATRSPIALSVTL 273
Query: 376 KYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435
           +   + A        +L  L   ++ EYRV+  S    D  EG+RA LVDKD+NPKW PA
Sbjct: 274 ESVRRAA--------KLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRPA 325
Query: 436 SLEEVNQSEVEALFEPL 452
           +L EV +++VEA F P+
Sbjct: 326 TLAEVTEADVEAYFAPV 342

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score =  177 bits (450), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 181/374 (48%), Gaps = 56/374 (14%)
Query: 80  ITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ 139
           ITL RP ALNA+      +  + L  W  DP V+ V+I+  GPRAFCAG DI    AE+ 
Sbjct: 37  ITLSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVIDAEGPRAFCAGGDI----AELH 92
Query: 140 KDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTM 199
                             + ++  +   +  + +  EY    +I+ + KP +SL  G T 
Sbjct: 93  G-----------------RGVAGDHAFGQ--DFWRVEYRXNDRIAAFPKPIVSLXQGFTX 133
Query: 200 GFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRI 259
           G G+G+  H R+RIV E + ++ PE  IGL PDVG +++ A+ P  G +G +LG+TG R 
Sbjct: 134 GGGVGLGCHARHRIVGETSQISXPECAIGLVPDVGGTHLLARAP--GRIGVWLGLTGARX 191
Query: 260 STPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKL 319
             P DA+FAG    +VP  +   L  AL     +   H           + PEG  P  +
Sbjct: 192 G-PGDAIFAGFADRFVPEADWPDLIAALEGGDLALPDH-----------AAPEGRLP--V 237
Query: 320 LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFS 379
           L  +I   F+        + E+     + +T +A    EAL+ + + +P +L  T +   
Sbjct: 238 LQDEIDRLFAG------TLAEIPARLEATDTPLAA---EALKALRRSSPLALAATLEILQ 288
Query: 380 KVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEE 439
           ++  + G        +   +  EYR   R+  ++DF EG+RA ++DKD++P+W     E 
Sbjct: 289 RLGPSAG--------IREALDLEYRFTYRAQGQADFLEGIRAAIIDKDRSPRWRHGDPEA 340
Query: 440 VNQSEVEALFEPLG 453
           V   EV +L  PLG
Sbjct: 341 VRPEEVASLLAPLG 354

>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407

Iteration: 1
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 189/389 (48%), Gaps = 56/389 (14%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V V+TL+  KALNA++LD        L+ W+ DP + CV+++GSG +AFCAG D++ +  
Sbjct: 52  VGVVTLNVEKALNALDLDXVRAXTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYH 111
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVF-TAEYSLICKISEYKKPYISLMD 195
                                  ++ + Q++E+ +VF   EY L   +  Y KP +   D
Sbjct: 112 ---------------------ASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGD 150
Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 255
           G+  G G+G+     +++VTE + +A PE  IGL+PDVG SY   + P  G  G +LG+T
Sbjct: 151 GIVXGGGLGLXAGASHKVVTETSRIAXPEVTIGLYPDVGGSYFLNRXP--GKXGLFLGLT 208
Query: 256 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP---HQDIVALLAKYSSD-- 310
               +  +DA + GL   Y+   +     +A   + +S+ P   HQ +   + + S+   
Sbjct: 209 AYHXNA-ADACYVGLADHYLNRDDKELXFDAXATLDWSDSPALNHQRLDTXINELSNQVD 267
Query: 311 -PEGEAPLKLLLPQITSCFSSEKSVRQI----IEELKKHQSSAETSVAQWADEALQGMGK 365
            P+G++ L            S++ + ++    + ++    S+  T  A W  +A      
Sbjct: 268 IPKGDSVLA----------ESQEXIDRLXAGSLTDIVTRXSTLSTDEA-WLSKACATXLA 316
Query: 366 GAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVD 425
           G+P S  L        A    +   +LS L+   K+E  V++    + DF EGVRA+L+D
Sbjct: 317 GSPISWHL--------AYIQTQLGTKLS-LAQCFKWELTVSVNVCAKGDFCEGVRALLID 367
Query: 426 KDQNPKWNPASLEEVNQSEVEALF-EPLG 453
           KD+ PKW  A ++ V  S +E +   P G
Sbjct: 368 KDKQPKWQFADVQSVPNSVIEDILTSPWG 396

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 94/216 (43%), Gaps = 37/216 (17%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA+IT+DRP A NA+N  +       L+E + DP V  V+I G+G ++FCAG D+K    
Sbjct: 25  VALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADLKA--- 81
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEY-KKPYISLMD 195
            I +  N                         +      E+     +  +  KP I+ ++
Sbjct: 82  -ISRGEN-------------------------LYHAEHPEWGFAGYVHHFIDKPTIAAVN 115
Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGM 254
           G  +G G  ++      I  E     +PE   GL    G  + I  + P    V   L +
Sbjct: 116 GTALGGGSELALASDLVIACESASFGLPEVKRGLIAGAGGVFRIVEQLP--RKVALELVL 173
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 290
           TG+ + T SDAL  GL  + VP    G++ EA LA+
Sbjct: 174 TGEPM-TASDALRWGLINEVVPD---GTVVEAALAL 205

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 49/271 (18%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVAV+TL  P   N+  +++  +  +     + DP V+ +++ G+ P AFC+G  I   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAA 73
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                  RN P     P++                               E + P I+ +
Sbjct: 74  AETFAAPRN-PDFSASPVQPAAF---------------------------ELRTPVIAAV 105
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G  +G G+ ++ H   RI+ E+   A+P+   G+ PD   ++       G +V A L +
Sbjct: 106 NGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDA-LAHWTLPRLVGTAVAAELLL 164
Query: 255 TGKRISTPSDALFAGLGTDYVPSGN-LGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 313
           TG   S    A+  GL    +P+G  LG+      A+  + D   ++          PE 
Sbjct: 165 TGASFSA-QRAVETGLANRCLPAGKVLGA------ALRMAHDIATNVA---------PES 208
Query: 314 EAPLKLLL--PQITSCFSSEKSVRQIIEELK 342
            A  K LL   Q+T   ++E + R+  + L+
Sbjct: 209 AALTKRLLWDAQMTGMSAAEVAARETADHLR 239

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 31/162 (19%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA +TL+RP  LNA    M+ +    L +  +DP V+CV+I G+G RAFCAG D+ GV  
Sbjct: 13  VAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGVTE 71
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICK-ISEYKKPYISLMD 195
           E+                GD               V  + Y+ + K +   +KP ++ ++
Sbjct: 72  EMDH--------------GD---------------VLRSRYAPMMKALHHLEKPVVAAVN 102
Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY 237
           G   G G+ ++    +R+++EK   A     +GL PD G  Y
Sbjct: 103 GAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLY 144

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 40/231 (17%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  +TL+RP+A NA++  +  ++   L + E+D  V  V+I G+ P  FCAG+D+     
Sbjct: 18  VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADP-VFCAGLDL----- 71
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
                                KE+   + L ++   + A            KP I  ++G
Sbjct: 72  ---------------------KELGGSSALPDISPRWPA----------LTKPVIGAING 100
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 256
             +  G+ ++ +    I +E    A     +GL P  G S    +  G G +   + +TG
Sbjct: 101 AAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIG-LARRMSLTG 159
Query: 257 KRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
             +S  +DAL AGL T+ VP   L    +A +A +   +    + ALLA Y
Sbjct: 160 DYLSA-ADALRAGLVTEVVPHDQLLGAAQA-VAASIVGNNQNAVRALLASY 208

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 39/222 (17%)
Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           A GA    +GNV      VIT++RP+A NA+N  + I     L+E + DP V+ V++ G+
Sbjct: 8   APGALAERRGNVM-----VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGA 62
Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLI 180
           G ++FCAG D+K +       R     P  P                        E+   
Sbjct: 63  GDKSFCAGADLKAIA-----RRENLYHPDHP------------------------EWGFA 93
Query: 181 CKISEY-KKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-I 238
             +  +  KP I+ ++G  +G G  ++      +  E+    +PE   GL    G  + I
Sbjct: 94  GYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRI 153
Query: 239 AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 280
           A + P    V   L +TG+ +S  + A   GL  + V +G++
Sbjct: 154 AEQLP--RKVAMRLLLTGEPLSAAA-ARDWGLINEVVEAGSV 192

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 111/264 (42%), Gaps = 37/264 (14%)
Query: 56  FATMAAAGAEEFVKGNVH--PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK 113
           F +MA+    E++        N V +I L+RPKALNA+   +  +    L  +E DP V 
Sbjct: 20  FQSMASGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVG 79
Query: 114 CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVF 173
            +++ G G +AF AG DIK                       +++ +S Q+  S     F
Sbjct: 80  AIVLTG-GDKAFAAGADIK-----------------------EMQNLSFQDCYSSK---F 112
Query: 174 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV 233
              +     +++ KKP I+ ++G   G G  ++         EK   A PE  IG  P  
Sbjct: 113 LKHWD---HLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGA 169
Query: 234 GFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFS 293
           G +    +   G S+   + +TG RIS   DA  AGL +   P   + +L E  +     
Sbjct: 170 GGTQRLTRAV-GKSLAMEMVLTGDRIS-AQDAKQAGLVSKICP---VETLVEEAIQCAEK 224
Query: 294 EDPHQDIVALLAKYSSDPEGEAPL 317
              +  IV  +AK S +   E  L
Sbjct: 225 IASNSKIVVAMAKESVNAAFEMTL 248

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 39/222 (17%)
Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           A GA    +GNV      VIT++RP+A NA+N  + I     L+E + DP V+ V++ G+
Sbjct: 8   APGALAERRGNVM-----VITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGA 62
Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLI 180
           G ++FCAG D+K +       R     P  P                        E+   
Sbjct: 63  GDKSFCAGADLKAIA-----RRENLYHPDHP------------------------EWGFA 93
Query: 181 CKISEY-KKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-I 238
             +  +  KP I+ ++G  +G G  ++      +  E+    +PE   GL    G  + I
Sbjct: 94  GYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRI 153
Query: 239 AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 280
           A + P    V   L +TG+ +S  + A   GL  + V +G++
Sbjct: 154 AEQLP--RKVAMRLLLTGEPLSAAA-ARDWGLINEVVEAGSV 192

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 31/197 (15%)
Query: 75  NGVAVITLDRPKALNAMNLDM-DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           N V  +TL+RP+ALNA N  + D   ++ LD    DP+V  VL+ GSG R F AG D+  
Sbjct: 14  NRVRTLTLNRPEALNAFNEALYDATAQALLDA-ADDPQVAVVLLTGSG-RGFSAGTDLAE 71
Query: 134 VVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISL 193
           + A I                       T    SE    F     LI  ++ + KP I  
Sbjct: 72  MQARI-----------------------TDPNFSEGKFGF---RGLIKALAGFPKPLICA 105
Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 253
           ++G+ +G G  I G+     ++    L  P   +G+ P+   SY+  +  G  +  A+L 
Sbjct: 106 VNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQN-AAWLL 164
Query: 254 MTGKRISTPSDALFAGL 270
           M+ + I    +AL  GL
Sbjct: 165 MSSEWIDA-EEALRMGL 180

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 36/224 (16%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GV V+TL+RP+ LNA+  ++     + L E E D  V+ +L+ G+G RAF AG D+   
Sbjct: 8   DGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLT-- 64
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICK-ISEYKKPYISL 193
                             + GD K            E     Y+ + + +S  +KP +  
Sbjct: 65  ------------------EFGDRKPD---------YEAHLRRYNRVVEALSGLEKPLVVA 97
Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 253
           ++GV  G G+ ++  G  R+             IGL PD G S++  +  G       L 
Sbjct: 98  VNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL- 156
Query: 254 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
           +   R+S   +AL  GL    VP+  L  ++EAL LA   ++ P
Sbjct: 157 LLSPRLSA-EEALALGLVHRVVPAEKL--MEEALSLAKELAQGP 197

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 42/232 (18%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  +TL+RP+A NA++  +  ++   L + E+D  V  V+I G+ P  FCAG+D+K    
Sbjct: 35  VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADP-VFCAGLDLK---- 89
Query: 137 EIQKDRNTP-LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
           E+      P + P+ P                                    KP I  ++
Sbjct: 90  ELGGSSALPDISPRWP---------------------------------ALTKPVIGAIN 116
Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 255
           G  +  G+ ++ +    I +E    A     +GL P  G S    +  G G +   + +T
Sbjct: 117 GAAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIG-LARRMSLT 175
Query: 256 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           G  +S  +DAL AGL T+ VP   L     A +A +   +    + ALL  Y
Sbjct: 176 GDYLSA-ADALRAGLVTEVVPHDQLLGAARA-VAASIVGNNQNAVRALLTSY 225

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G G +AF AG DIK +  
Sbjct: 15  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GEKAFAAGADIKEMQN 73
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
              +D            C   K              F + +  I +I   KKP I+ ++G
Sbjct: 74  RTFQD------------CYSGK--------------FLSHWDHITRI---KKPVIAAVNG 104
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 256
             +G G  ++         EK     PE  +G  P  G +    +   G S+   + +TG
Sbjct: 105 YALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTG 163
Query: 257 KRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAP 316
            RIS   DA  AGL +   P   L  ++EA+       +  + IVA +AK S +   E  
Sbjct: 164 DRISA-QDAKQAGLVSKIFPVETL--VEEAIQCAEKIANNSKIIVA-MAKESVNAAFEMT 219
Query: 317 L 317
           L
Sbjct: 220 L 220

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G G +AF AG DIK +  
Sbjct: 17  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GEKAFAAGADIKEMQN 75
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
              +D            C   K              F + +  I +I   KKP I+ ++G
Sbjct: 76  RTFQD------------CYSGK--------------FLSHWDHITRI---KKPVIAAVNG 106
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 256
             +G G  ++         EK     PE  +G  P  G +    +   G S+   + +TG
Sbjct: 107 YALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTG 165
Query: 257 KRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAP 316
            RIS   DA  AGL +   P   L  ++EA+       +  + IVA +AK S +   E  
Sbjct: 166 DRISA-QDAKQAGLVSKIFPVETL--VEEAIQCAEKIANNSKIIVA-MAKESVNAAFEMT 221
Query: 317 L 317
           L
Sbjct: 222 L 222

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G G +AF AG DIK +  
Sbjct: 18  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GEKAFAAGADIKEMQN 76
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
              +D            C   K              F + +  I +I   KKP I+ ++G
Sbjct: 77  RTFQD------------CYSGK--------------FLSHWDHITRI---KKPVIAAVNG 107
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 256
             +G G  ++         EK     PE  +G  P  G +    +   G S+   + +TG
Sbjct: 108 YALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTG 166
Query: 257 KRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAP 316
            RIS   DA  AGL +   P   L  ++EA+       +  + IVA +AK S +   E  
Sbjct: 167 DRISA-QDAKQAGLVSKIFPVETL--VEEAIQCAEKIANNSKIIVA-MAKESVNAAFEMT 222
Query: 317 L 317
           L
Sbjct: 223 L 223

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 20/181 (11%)
Query: 58  TMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           +M+AA A++ V     P GVA+IT +R   LNA   D+   + + +D  E+DP ++ +++
Sbjct: 21  SMSAADAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVL 80
Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEY 177
            G G R FCAG  +    A    D+               K+ +  + + E    F    
Sbjct: 81  TGRG-RGFCAGAYLGSADAAAGYDKTM----------AKAKDANLADLVGERPPHF---- 125
Query: 178 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY 237
                ++  +KP I+ ++G  +G G+  +     R        A      GL  + G S+
Sbjct: 126 -----VTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISW 180
Query: 238 I 238
           I
Sbjct: 181 I 181

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 34/205 (16%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RP+ALNA+N  +  +  S   E + DP +  ++I GS  +AF AG DIK    
Sbjct: 15  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIK---- 69
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE-YSLICKISEYKKPYISLMD 195
                           +  D+             + FTA+ ++   K++  + P I+ + 
Sbjct: 70  ----------------EMADLT----------FADAFTADFFATWGKLAAVRTPTIAAVA 103
Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 255
           G  +G G  ++      I  +      PE  +G+ P +G S    +  G       L +T
Sbjct: 104 GYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAK-AMDLILT 162
Query: 256 GKRISTPSDALFAGLGTDYVPSGNL 280
           G+ +   ++A  +GL +  VP+ +L
Sbjct: 163 GRTMD-AAEAERSGLVSRVVPADDL 186

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 34/205 (16%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RP+ALNA+N  +  +  S   E + DP +  ++I GS  +AF AG DIK    
Sbjct: 35  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIK---- 89
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE-YSLICKISEYKKPYISLMD 195
                           +  D+             + FTA+ ++   K++  + P I+ + 
Sbjct: 90  ----------------EMADLT----------FADAFTADFFATWGKLAAVRTPTIAAVA 123
Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 255
           G  +G G  ++      I  +      PE  +G+ P +G S    +  G       L +T
Sbjct: 124 GYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA-MDLILT 182
Query: 256 GKRISTPSDALFAGLGTDYVPSGNL 280
           G+ +   ++A  +GL +  VP+ +L
Sbjct: 183 GRTMD-AAEAERSGLVSRVVPADDL 206

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 34/205 (16%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RP+ALNA+N  +  +  S   E + DP +  ++I GS  +AF AG DIK    
Sbjct: 14  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIK---- 68
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE-YSLICKISEYKKPYISLMD 195
                           +  D+             + FTA+ ++   K++  + P I+ + 
Sbjct: 69  ----------------EMADLT----------FADAFTADFFATWGKLAAVRTPTIAAVA 102
Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 255
           G  +G G  ++      I  +      PE  +G+ P +G S    +  G       L +T
Sbjct: 103 GYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAK-AMDLILT 161
Query: 256 GKRISTPSDALFAGLGTDYVPSGNL 280
           G+ +   ++A  +GL +  VP+ +L
Sbjct: 162 GRTMD-AAEAERSGLVSRVVPADDL 185

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           EF+  +V   GV  +TL+RP+ LN+ N +M  +    L + E D  ++C+L+ G+G R F
Sbjct: 15  EFILSHVE-KGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGF 72
Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISE 185
           CAG D+         DRN       P              L   +E F     L+ ++++
Sbjct: 73  CAGQDL--------NDRNVDPTGPAP-------------DLGMSVERFY--NPLVRRLAK 109
Query: 186 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 245
             KP I  ++GV  G G  ++  G   I        M  + +GL PD G +++  +   G
Sbjct: 110 LPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPR-VAG 168
Query: 246 GSVGAYLGMTGKRIS 260
            +    L + G ++S
Sbjct: 169 RARAMGLALLGNQLS 183

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 34/212 (16%)
Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GV +I LDRP ALNA+N  ++ +      ++++D  +  +++ GS  RAF AG DI    
Sbjct: 19  GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADI---- 73
Query: 136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD 195
                     +V   P +  +   +S  + L+++                 +KP ++ + 
Sbjct: 74  --------AEMVTLTPHQARERNLLSGWDSLTQV-----------------RKPIVAAVA 108
Query: 196 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 255
           G  +G G  ++      I  +      PE  +G+ P +G +    +  G       L +T
Sbjct: 109 GYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAK-AMDLCLT 167
Query: 256 GKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           G+ + T  +A   GL +  VP+ +L  L EAL
Sbjct: 168 GRSL-TAEEAERVGLVSRIVPAADL--LDEAL 196

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 30/160 (18%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           +AV TL+   A NA +  +       +D+ E D  ++ V+I G G R F AG DIK    
Sbjct: 16  IAVATLNHAPA-NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIK---- 69
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
                              +   ++   Q +E+ ++    +  + K S   KP I+ + G
Sbjct: 70  -------------------EFTSVTEAKQATELAQLGQVTFERVEKCS---KPVIAAIHG 107
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 236
             +G G+  +     R  TE   L +PE  +GL P  GF+
Sbjct: 108 AALGGGLEFAXSCHXRFATESAKLGLPELTLGLIP--GFA 145

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137
           A ITL+RP ALNA++  M  + ++   E E+D RV  +++ G+G RAFC+G D+K    E
Sbjct: 22  ATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVK----E 76
Query: 138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV 197
           I +D    ++ + P        +ST +Q       + A            KP ++ ++G+
Sbjct: 77  IPEDGK--VIYERPY-------LSTYDQ-------WEAPQEGTPPFRTMAKPVLTAVNGI 120
Query: 198 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGL 229
             G G+         I +E+     P   IGL
Sbjct: 121 CCGAGMDWVTTTDIVIASEQATFFDPHVSIGL 152

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           +A++TL+RP+ +NAM  D+ + +K  L +   D  V+ V+I G+G + FC+G D K    
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQK---- 88
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
                             G +  I    Q +  +        +I  +    +P I+ ++G
Sbjct: 89  ----------------SAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAING 132
Query: 197 VTMGFGIGISGHGRYRIVTEKTLL--AMPENGIGLFPDVGFSYIAAKGPG 244
             +G G+ ++     R+ ++      A   NG+    ++G SY+  +  G
Sbjct: 133 AAIGGGLCLALACDVRVASQDAYFRAAGINNGL-TASELGLSYLLPRAIG 181

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 28/154 (18%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V VITLD P   N  +  ++   K  L    +D  V+ V++ G   R+F AG D      
Sbjct: 10  VRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDF----- 64
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
                              +VK++S    + E I+     Y  +  ++   KP I+ +DG
Sbjct: 65  ------------------NEVKQLSRSEDIEEWIDRVIDLYQAVLNVN---KPTIAAVDG 103
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPE--NGIG 228
             +G G   +     R++       MPE  +GIG
Sbjct: 104 YAIGMGFQFALMFDQRLMASTANFVMPELKHGIG 137

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 32/201 (15%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V ++TL+RP A NA+N  + ++  + L+   +D  +   +I G+  R F AG D+  +  
Sbjct: 15  VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMA- 72
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
             +KD    L    P                           L  ++  + KP I+ ++G
Sbjct: 73  --EKDLAATLNDTRP--------------------------QLWARLQAFNKPLIAAVNG 104
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 256
             +G G  ++      +  E     +PE  +G+ P  G +    +   G S+ + + ++G
Sbjct: 105 YALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSV-GKSLASKMVLSG 163
Query: 257 KRISTPSDALFAGLGTDYVPS 277
           + I T   A  AGL +D  PS
Sbjct: 164 ESI-TAQQAQQAGLVSDVFPS 183

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 35/212 (16%)
Query: 71  NVHPN-------GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           ++HP+       GV  + ++RP+A NA+  ++ +     LDE + +  V+ V++ G+   
Sbjct: 2   SLHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGA-EH 60
Query: 124 AFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKI 183
            F AG D+K  +  +Q     P   +VP                         + L+   
Sbjct: 61  DFTAGNDMKDFMGFVQNPNAGP-AGQVP------------------------PFVLLKSA 95
Query: 184 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 243
           +   KP I  + GV +G G+ I             L  +P   +GL P+ G S +  K  
Sbjct: 96  ARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVK-Q 154
Query: 244 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYV 275
            G    A L  T K+ +  + AL AGL  + V
Sbjct: 155 AGYHKAAELLFTAKKFNAET-ALQAGLVNEIV 185

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 18/221 (8%)
Query: 56  FATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCV 115
           F +MA   + E ++       V  + L+RP   NAMN     +     ++   D   + V
Sbjct: 20  FQSMAPDHSYESLRVTSAQKHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAV 79
Query: 116 LIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTA 175
           +I G+G + F AG+D+  + ++I       L PK      DV  IS    L ++I  +  
Sbjct: 80  VISGAG-KMFTAGIDLMDMASDI-------LQPK----GDDVARISWY--LRDIITRYQE 125
Query: 176 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF 235
            +++I       KP I+ + G  +G G+ +      R   +     + E  +GL  DVG 
Sbjct: 126 TFNVI---ERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGT 182
Query: 236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 276
                K  G  S+   L  T +++    +AL +GL +   P
Sbjct: 183 LQRLPKVIGNQSLVNELAFTARKM-MADEALGSGLVSRVFP 222

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLR-- 67
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                         ++PL  G V  +    +++ +       + +I KI   K+P ++ +
Sbjct: 68  --------------EIPLDKG-VAGVRDHFRIAALW-----WHQMIHKIIRVKRPVLAAI 107
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK 241
           +GV  G G+GIS      I  +        + IG+  D   SY  A+
Sbjct: 108 NGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLAR 154

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLR-- 67
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                         ++PL  G V  +    +++ +       + +I KI   K+P ++ +
Sbjct: 68  --------------EIPLDKG-VAGVRDHFRIAALW-----WHQMIHKIIRVKRPVLAAI 107
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK 241
           +GV  G G+GIS      I  +        + IG+  D   SY  A+
Sbjct: 108 NGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLAR 154

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 66  EFVKGNVHPNG-VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRA 124
           EFV       G V +I L RP  LNA++  M  +  + ++ ++ + +V+ +++ G G RA
Sbjct: 3   EFVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RA 61
Query: 125 FCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKIS 184
           F AG DI+    E+ KD              D   +   NQ ++             ++S
Sbjct: 62  FAAGADIQ----EMAKD--------------DPIRLEWLNQFADW-----------DRLS 92
Query: 185 EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 244
             K P I+ ++G+ +G G  ++      + +       PE  +G+ P  G +    K  G
Sbjct: 93  IVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIG 152
Query: 245 GGSVGAYLGMTGKRIST 261
                 +L  TG R+S 
Sbjct: 153 PKRALEWL-WTGARMSA 168

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 26/152 (17%)
Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           +ITL+RP +LN++N D+ +           DP  +  +I G+G RAF AG D        
Sbjct: 40  IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDF------- 91
Query: 139 QKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVT 198
                           G +KE+S    L    +       ++  ++  + P ++ ++G  
Sbjct: 92  ----------------GYLKELSADADLRA--KTIRDGREIVLGMARCRIPVVAAVNGPA 133
Query: 199 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLF 230
           +G G  +        + E   LA P   +GL 
Sbjct: 134 VGLGCSLVALSDIVYIAENAYLADPHVQVGLV 165

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 34/166 (20%)
Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           H   V  I LDRP+ LNA++  M  +    + + E+D  V+ VL+ G+G RAFC+G    
Sbjct: 12  HDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSG---- 66
Query: 133 GVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYIS 192
                                 GD+    T         V  A       I+   KP I+
Sbjct: 67  ----------------------GDLTGGDTAGAADAANRVVRA-------ITSLPKPVIA 97
Query: 193 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 238
            + G  +GFG  ++      +    +   +    +GL PD G S +
Sbjct: 98  GVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASAL 143

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLR-- 67
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                         ++PL  G V  +    +++ +         +I KI   K+P ++ +
Sbjct: 68  --------------EIPLDKG-VAGVRDHFRIAALW-----WQQMIHKIIRVKRPVLAAI 107
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK 241
           +GV  G G+GIS      I  +        + IG+  D   SY  A+
Sbjct: 108 NGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLAR 154

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 30/165 (18%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV  +TL+RP+A NA++  M             D  V+ V++  SG +AFCAG D+K +
Sbjct: 34  RGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEM 92
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
            AE  ++       K+  +C DV                      +  I     P I+ +
Sbjct: 93  RAEPSRE----YYEKLFARCTDV----------------------MLAIQRLPAPVIARV 126
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF---PDVGFS 236
            G+    G  +       + T     A+    +GLF   P V  S
Sbjct: 127 HGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVALS 171

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 28/184 (15%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  I+L+R +  N+++L +  + ++ L +   +   + V++ G+G +AFCAG D+K    
Sbjct: 19  VVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKE--- 75
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
                           + G  +E     Q+   +            + +  +P I+ ++G
Sbjct: 76  ----------------RAGXNEE-----QVRHAVSXIRTTXE---XVEQLPQPVIAAING 111
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 256
           + +G G  +S    +RI  E   L + E  + + P  G +    +  G G     +  TG
Sbjct: 112 IALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELI-YTG 170
Query: 257 KRIS 260
           +RIS
Sbjct: 171 RRIS 174

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 36/209 (17%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I L  PK  N ++L M    +S +        +K ++I   GP  F +G D+K +
Sbjct: 41  DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP-VFSSGHDLKEL 99
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E  +D +                           EVF     ++  I  +  P I+++
Sbjct: 100 TEEQGRDYHA--------------------------EVFQTCSKVMMHIRNHPVPVIAMV 133
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF---PDVGFSYIAAKGPGGGSVGAY 251
           +G+    G  +       + ++K+  A P   +GLF   P V  +    +      V   
Sbjct: 134 NGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPR-----KVALE 188
Query: 252 LGMTGKRISTPSDALFAGLGTDYVPSGNL 280
           +  TG+ IS   +AL  GL +  VP   L
Sbjct: 189 MLFTGEPISA-QEALLHGLLSKVVPEAEL 216

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 29/209 (13%)
Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           ++T++RP   NA++ +M        D  ++DP ++C ++ G+G   FCAGMD+K      
Sbjct: 32  IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAG-GYFCAGMDLKAA---- 86
Query: 139 QKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVT 198
                T   P    K G                   +    + K    KKP I+ ++G  
Sbjct: 87  -----TKKPPGDSFKDGSYD---------------PSRIDALLKGRRLKKPLIAAVEGPA 126
Query: 199 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR 258
           +  G  I      R+  E     + E    L+P +G S +        +V   L +TG+ 
Sbjct: 127 IAGGTEILQGTDIRVAAESAKFGISEAKWSLYP-MGGSAVRLVRQIPYTVACDLLLTGRH 185
Query: 259 ISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           I T ++A   GL    VP G   +L +AL
Sbjct: 186 I-TAAEAKEMGLVGHVVPDGQ--ALTKAL 211

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 37/262 (14%)
Query: 80  ITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ 139
           + L+RP+  NAMN     +      +   D   + V++ G+G + F +G+D+  + ++I 
Sbjct: 17  VQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDI- 74
Query: 140 KDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTM 199
                 L P       DV  I+    L ++I  +   +++I K     KP I+ + G  +
Sbjct: 75  ------LQPP----GDDVARIAWY--LRDLISRYQKTFTVIEKCP---KPVIAAIHGGCI 119
Query: 200 GFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRI 259
           G G+ +      R  T+     + E  +GL  DVG      K  G  S+   L  T +++
Sbjct: 120 GGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKM 179
Query: 260 STPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKL 319
               +AL +GL +   P       K+ +L   F         AL A  SS    ++P+ +
Sbjct: 180 -MADEALDSGLVSRVFPD------KDVMLNAAF---------ALAADISS----KSPVAV 219
Query: 320 LLPQITSCFSSEKSVRQIIEEL 341
              +I   +S + SV + ++ +
Sbjct: 220 QGSKINLIYSRDHSVDESLDYM 241

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 27/158 (17%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V ++T++RP   NA++ +M  ++ +  DE + D  ++  ++ G+G  A+C G D+     
Sbjct: 19  VVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS-AYCVGGDLSD--G 75
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
            + +D + P     PL   D   I     LS  +                 KP I+ ++G
Sbjct: 76  WMVRDGSAP-----PL---DPATIGKGLLLSHTL----------------TKPLIAAVNG 111
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG 234
             +G G  +      R+  E     +PE   GL P  G
Sbjct: 112 ACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAG 149

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V VI L+RP   NA +  M  +    L E+E+D  ++  ++ G GP  F AG+D+  V A
Sbjct: 19  VLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP-LFTAGLDLASVAA 77
Query: 137 EIQ 139
           EIQ
Sbjct: 78  EIQ 80

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 40/231 (17%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  +TL+RP++ NA++ ++   +   L + ++D  V  V++ G+ P  FCAG+D+K    
Sbjct: 19  VRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP-VFCAGLDLK---- 73
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
                           + GD  E+                  +  K  +  KP I  ++G
Sbjct: 74  ----------------ELGDTTELP----------------DISPKWPDMTKPVIGAING 101
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 256
             +  G+ ++ +    I +E    A     +GL P  G S    +  G G +   + +TG
Sbjct: 102 AAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVG-LARRMSLTG 160
Query: 257 KRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
             +S   DAL AGL T+ V   +L +     +A +   +  + + ALL  Y
Sbjct: 161 DYLSA-QDALRAGLVTEVVAHDDLLTAARR-VAASIVGNNQKAVRALLDSY 209

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+         P++               L E I    +++     +  Y KP I+++
Sbjct: 76  FREVDAG------PEI---------------LQEKIRREASQWQWKL-LRMYAKPTIAMV 113
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G   G G          I  ++    + E   G+ P    S   A   G      Y+ M
Sbjct: 114 NGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYI-M 172
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           TGK       A   GL  + VP   L  L+E  + +  +      +V   AK+
Sbjct: 173 TGKTFGGQKAAEM-GLVNESVP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+         P++               L E I    +++     +  Y KP I+++
Sbjct: 76  FREVDAG------PEI---------------LQEKIRREASQWQWKL-LRMYAKPTIAMV 113
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G   G G          I  ++    + E   G+ P    S   A   G      Y+ M
Sbjct: 114 NGWCFGGGFAPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-M 172
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           TGK       A   GL  + VP   L  L+E  + +  +      +V   AK+
Sbjct: 173 TGKTFGGQKAAEM-GLVNESVP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+         P++               L E I    +++     +  Y KP I+++
Sbjct: 76  FREVDAG------PEI---------------LQEKIRREASQWQWKL-LRMYAKPTIAMV 113
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G   G G          I  ++    + E   G+ P    S   A   G      Y+ M
Sbjct: 114 NGWCFGGGFAPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-M 172
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           TGK       A   GL  + VP   L  L+E  + +  +      +V   AK+
Sbjct: 173 TGKTFGGQKAAEM-GLVNESVP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+         P++               L E I    +++     +  Y KP I+++
Sbjct: 76  FREVDAG------PEI---------------LQEKIRREASQWQWKL-LRMYAKPTIAMV 113
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G   G G          I  ++    + E   G+ P    S   A   G      Y+ M
Sbjct: 114 NGWCFGGGFAPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-M 172
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           TGK       A   GL  + VP   L  L+E  + +  +      +V   AK+
Sbjct: 173 TGKTFGGQKAAEM-GLVNESVP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+         P++               L E I    +++     +  Y KP I+++
Sbjct: 76  FREVDAG------PEI---------------LQEKIRREASQWQWKL-LRMYAKPTIAMV 113
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G   G G          I  ++    + E   G+ P    S   A   G      Y+ M
Sbjct: 114 NGWCFGGGFAPLVACDLAICADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYI-M 172
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           TGK       A   GL  + VP   L  L+E  + +  +      +V   AK+
Sbjct: 173 TGKTFGGQKAAEM-GLVNESVP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+         P++               L E I    +++     +  Y KP I+++
Sbjct: 76  FREVDAG------PEI---------------LQEKIRREASQWQWKL-LRMYAKPTIAMV 113
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G   G G          I  ++    + E   G+ P    S   A   G      Y+ M
Sbjct: 114 NGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-M 172
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           TGK       A   GL  + VP   L  L+E  + +  +      +V   AK+
Sbjct: 173 TGKTFGGQKAAEM-GLVNESVP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+         P++               L E I    +++     +  Y KP I+++
Sbjct: 76  FREVDAG------PEI---------------LQEKIRREASQWQWKL-LRMYAKPTIAMV 113
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G   G G          I  ++    + E   G+ P    S   A   G      Y+ M
Sbjct: 114 NGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-M 172
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           TGK       A   GL  + VP   L  L+E  + +  +      +V   AK+
Sbjct: 173 TGKTFGGQKAAEM-GLVNESVP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+         P++               L E I    +++     +  Y KP I+++
Sbjct: 76  FREVDAG------PEI---------------LQEKIRREASQWQWKL-LRMYAKPTIAMV 113
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G   G G          I  ++    + E   G+ P    S   A   G      Y+ M
Sbjct: 114 NGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-M 172
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           TGK       A   GL  + VP   L  L+E  + +  +      +V   AK+
Sbjct: 173 TGKTFGGQKAAEM-GLVNESVP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+         P++               L E I    +++     +  Y KP I+++
Sbjct: 76  FREVDAG------PEI---------------LQEKIRREASQWQWKL-LRMYAKPTIAMV 113
Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G   G G          I  ++    + E   G+ P    S   A   G      Y+ M
Sbjct: 114 NGWCFGGGFSPLVACDLAICADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYI-M 172
Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307
           TGK       A   GL  + VP   L  L+E  + +  +      +V   AK+
Sbjct: 173 TGKTFGGQKAAEM-GLVNESVP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 35/158 (22%)
Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P+ +A+I L  P  +NA++  +  + ++ L +  SD  VK ++I G+    FCAG DI G
Sbjct: 13  PHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADIHG 70
Query: 134 VVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISL 193
             A           P + L                         SL+ +I  Y+KP ++ 
Sbjct: 71  FSA---------FTPGLALG------------------------SLVDEIQRYQKPVLAA 97
Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP 231
           + GV +G G+ ++    YRI   K  + +PE  +G+ P
Sbjct: 98  IQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILP 135

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           V +IT++RP A NA+N  +     +  D+ +S   +   +I G+G   FCAGMD+K  V
Sbjct: 17  VLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGN-FCAGMDLKAFV 74

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA +TL+ P   NA++  +  +    L +  SDP V+ V++  +G   FCAG D+     
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG-TFCAGADLS---- 75
Query: 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDG 196
                           + G     S+   ++  +E      +L+  I E + P I+ +DG
Sbjct: 76  ----------------EAGSGGSPSSAYDMA--VERAREMAALMRAIVESRLPVIAAIDG 117
Query: 197 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV 233
                G G+ G     +   ++  A+ E  IG+ P +
Sbjct: 118 HVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAI 154

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 35/158 (22%)
Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P+ +A+I L  P  +NA++  +  + ++ L +  SD  VK ++I G+    FCAG DI G
Sbjct: 28  PHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADIHG 85
Query: 134 VVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISL 193
             A           P + L                         SL+ +I  Y+KP ++ 
Sbjct: 86  FSA---------FTPGLALG------------------------SLVDEIQRYQKPVLAA 112
Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP 231
           + GV +G G+ ++    YRI   K  + +PE  +G+ P
Sbjct: 113 IQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILP 150

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           + +IT++RPKA N++N  +       +D  ++D  +   ++ G+G  +FCAGMD+K
Sbjct: 25  ILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLK 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	1e-139
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-138
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	7e-28
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-25
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	2e-25
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	3e-25
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	3e-25
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	3e-25
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-24
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-24
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	4e-24
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	4e-24
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	7e-24
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	1e-23
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	3e-23
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	5e-23
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	1e-22
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	1e-22
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	1e-22
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	2e-22
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	2e-22
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	3e-22
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	6e-22
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	6e-22
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	1e-21
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	1e-21
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-21
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	3e-21
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	7e-21
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	7e-21
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	1e-20
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	1e-20
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	2e-20
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-20
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	3e-20
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	3e-20
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	3e-20
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	3e-20
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	3e-20
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	5e-20
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	7e-20
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	8e-20
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	9e-20
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	1e-19
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	2e-19
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	4e-19
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	4e-19
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	5e-19
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	6e-19
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	7e-19
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	7e-19
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	7e-19
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	8e-19
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	1e-18
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	1e-18
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	1e-18
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	2e-18
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	3e-18
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	3e-18
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	4e-18
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	1e-17
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	1e-17
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-17
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-17
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	4e-17
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	6e-17
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	8e-17
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	4e-16
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	1e-15
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	2e-15
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	2e-15
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	6e-15
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	1e-14

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score =  406 bits (1044), Expect = e-139
 Identities = 114/434 (26%), Positives = 187/434 (43%), Gaps = 45/434 (10%)

Query: 33  HQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMN 92
           H  +     L F    T+   +   + A                V V+TL+  KALNA++
Sbjct: 8   HHHSSGRENLYFQGHMTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNALD 67

Query: 93  LDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPL 152
           LDM       L+ W+ DP + CV+++GSG +AFCAG D++ +       +          
Sbjct: 68  LDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVT------ 121

Query: 153 KCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 212
                               F  EY L   +  Y KP +   DG+ MG G+G+     ++
Sbjct: 122 --------------EVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHK 167

Query: 213 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 272
           +VTE + +AMPE  IGL+PDVG SY   + PG   +G +LG+T   ++  +DA + GL  
Sbjct: 168 VVTETSRIAMPEVTIGLYPDVGGSYFLNRMPGK--MGLFLGLTAYHMN-AADACYVGLAD 224

Query: 273 DYVPSGNLGSLKEALLAVTFSEDP---HQDIVALLAKYSSD---PEGEAPLKLLLPQITS 326
            Y+   +   + +A+  + +S+ P   HQ +  ++ + S+    P+G++ L      I  
Sbjct: 225 HYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDR 284

Query: 327 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386
             +   S+  I+  +    +        W  +A   M  G+P S  L             
Sbjct: 285 LMAG--SLTDIVTRMSTLSTDEA-----WLSKACATMLAGSPISWHLAYIQTQLGTKL-- 335

Query: 387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVE 446
                   L+   K+E  V++    + DF EGVRA+L+DKD+ PKW  A ++ V  S +E
Sbjct: 336 -------SLAQCFKWELTVSVNVCAKGDFCEGVRALLIDKDKQPKWQFADVQSVPNSVIE 388

Query: 447 ALFEPLGTGVEELK 460
            +          L 
Sbjct: 389 DILTSPWGEEHPLS 402

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score =  400 bits (1030), Expect = e-138
 Identities = 133/389 (34%), Positives = 201/389 (51%), Gaps = 50/389 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
               VITL+RPK LNA+ L+M  +    L +WE DP    ++I+G+G +AFCAG DI+ +
Sbjct: 14  GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVI 73

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
               +  +                              F  EY L   +   +KPY++L+
Sbjct: 74  SEAEKAKQ------------------------KIAPVFFREEYMLNNAVGSCQKPYVALI 109

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
            G+TMG G+G+S HG++R+ TEK L AMPE  IGLFPDVG  Y   +  G   +G +L +
Sbjct: 110 HGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK--LGYFLAL 167

Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP--- 311
           TG R+    D   AG+ T +V S  L  L+E LLA+       ++I ++L  Y ++    
Sbjct: 168 TGFRLK-GRDVYRAGIATHFVDSEKLAMLEEDLLALKSPS--KENIASVLENYHTESKID 224

Query: 312 -EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFS 370
            +    L+  + +I SCFS+  +V +IIE L++  S        +A E L+ + K +P S
Sbjct: 225 RDKSFILEEHMDKINSCFSAN-TVEEIIENLQQDGS-------SFALEQLKVINKMSPTS 276

Query: 371 LCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNP 430
           L +T +         G +      L  V+  EYR++       DF EGVRAVL+DKDQ+P
Sbjct: 277 LKITLRQLM-----EGSSKT----LQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQSP 327

Query: 431 KWNPASLEEVNQSEVEALFEPLGTGVEEL 459
           KW PA L+EV + ++   F+ LG+   + 
Sbjct: 328 KWKPADLKEVTEEDLNNHFKSLGSSDLKF 356

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  111 bits (280), Expect = 7e-28
 Identities = 52/246 (21%), Positives = 91/246 (36%), Gaps = 34/246 (13%)

Query: 47  PQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEW 106
                 ++   +M+AA A++ V     P GVA+IT +R   LNA   D+   + + +D  
Sbjct: 10  GTLEAQTQGPGSMSAADAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRA 69

Query: 107 ESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQL 166
           E+DP ++ +++ G G R FCAG  +    A    D+         L     +        
Sbjct: 70  EADPGIRVIVLTGRG-RGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPH---- 124

Query: 167 SEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226
                           ++  +KP I+ ++G  +G G+  +     R        A     
Sbjct: 125 ---------------FVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFAR 169

Query: 227 IGLFPDVGFSY-----IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 281
            GL  + G S+              +V   L ++G+      +A   GL  + V    L 
Sbjct: 170 RGLIAEFGISWILPRLT------SWAVALDLLLSGRTFL-AEEAAQLGLVKEVVTPEQL- 221

Query: 282 SLKEAL 287
            +  AL
Sbjct: 222 -MPRAL 226

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  103 bits (259), Expect = 2e-25
 Identities = 50/241 (20%), Positives = 85/241 (35%), Gaps = 48/241 (19%)

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
             G+   +        V  I LDRP+ LNA++  M  +    + + E+D  V+ VL+ G+
Sbjct: 1   GPGSMNGISVEHD-GAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGA 59

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLI 180
           G RAFC+G D+ G       D    +V                                 
Sbjct: 60  G-RAFCSGGDLTGGDTAGAADAANRVVR-------------------------------- 86

Query: 181 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA 240
             I+   KP I+ + G  +GFG  ++      +    +   +    +GL PD G S +  
Sbjct: 87  -AITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLP 145

Query: 241 KGPGGGSVGAY----LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSED 295
                  +G      + MT ++IS    A   G+ +    +           +  + S  
Sbjct: 146 L-----LIGRARTSRMAMTAEKISAA-TAFEWGMISHITSADEY--ESVLTDVLRSVSGG 197

Query: 296 P 296
           P
Sbjct: 198 P 198

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  103 bits (260), Expect = 2e-25
 Identities = 39/240 (16%), Positives = 72/240 (30%), Gaps = 37/240 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
               +I L  P  LNA+  +  I     L+  + +  V   +I+ SG R F +G D KG+
Sbjct: 17  GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGI 75

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYS-LICKISEYKKPYISL 193
                 D N                    ++ S+ +  F A    +     ++ K  I  
Sbjct: 76  AKAQGDDTNKY-----------------PSETSKWVSNFVARNVYVTDAFIKHSKVLICC 118

Query: 194 MDGVTMGFGIGISGHGRYRI-VTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG--- 249
           ++G  +G    +         + +K  L  P   +GL  + G +            G   
Sbjct: 119 LNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPL-----KFGTNT 173

Query: 250 -AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS 308
                M  K           G  +             +  A  F+    +++   +    
Sbjct: 174 TYECLMFNKPFK-YDIMCENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGLY 225

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  103 bits (258), Expect = 3e-25
 Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 42/227 (18%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VA +TL+RP  LNA    M+ +    L +  +DP V+CV+I G+G RAFCAG      
Sbjct: 11  GQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAG------ 63

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                D+  ++ +    +++    A   ++  +   +KP ++ +
Sbjct: 64  --------------------EDLSGVTEEMDHGDVLRSRYAP--MMKALHHLEKPVVAAV 101

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY--- 251
           +G   G G+ ++    +R+++EK   A     +GL PD G  Y   +      VG     
Sbjct: 102 NGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPR-----LVGRAKAL 156

Query: 252 -LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
            L + G++++   +A   GL T  +P  +    +E    A   S  P
Sbjct: 157 ELAVLGEKVTAE-EAAALGLATKVIPLSDW--EEEVKQFAERLSAMP 200

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  103 bits (259), Expect = 3e-25
 Identities = 51/228 (22%), Positives = 88/228 (38%), Gaps = 38/228 (16%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLR-- 67

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYS-LICKISEYKKPYISL 193
                                ++        + +   +    +  +I KI   K+P ++ 
Sbjct: 68  ---------------------EIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAA 106

Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY-- 251
           ++GV  G G+GIS      I  +        + IG+  D   SY  A+      VG    
Sbjct: 107 INGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLAR-----IVGMRRA 161

Query: 252 --LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
             L +T + +  P +A   GL +   P       + A  +A   +  P
Sbjct: 162 MELMLTNRTLY-PEEAKDWGLVSRVYPKDEF--REVAWKVARELAAAP 206

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  101 bits (254), Expect = 1e-24
 Identities = 59/227 (25%), Positives = 89/227 (39%), Gaps = 40/227 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           N V  +TL+RP+ALNA N  +       L +   DP+V  VL+ GSG R F AG D+   
Sbjct: 14  NRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLA-- 70

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                   E+  +       E       LI  ++ + KP I  +
Sbjct: 71  ------------------------EMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAV 106

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----A 250
           +G+ +G G  I G+     ++    L  P   +G+ P+   SY+  +      VG    A
Sbjct: 107 NGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQ-----LVGRQNAA 161

Query: 251 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
           +L M+ + I    +AL  GL         L  L EA   A   +  P
Sbjct: 162 WLLMSSEWIDAE-EALRMGLVWRICSPEEL--LPEARRHAEILAAKP 205

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  102 bits (257), Expect = 2e-24
 Identities = 43/231 (18%), Positives = 73/231 (31%), Gaps = 22/231 (9%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + VA IT +RP+  NA+  D  ++  + ++  + DP V  +L+ G G   FCAG D+   
Sbjct: 43  DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDLSAY 101

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE---YSLICKISEYKKPYI 191
                            L           ++  + +  +            +    KP +
Sbjct: 102 AEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTV 161

Query: 192 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF-----SYIAAKGPGGG 246
             + G  +  G  I+ H    I      +  P   +   P  G          AK     
Sbjct: 162 VKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHRLGDQRAKR---- 217

Query: 247 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
                L  TG  I+  + A   GL  +     +L        L    +  P
Sbjct: 218 -----LLFTGDCIT-GAQAAEWGLAVEAPDPADL--DARTERLVERIAAMP 260

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  100 bits (251), Expect = 4e-24
 Identities = 35/226 (15%), Positives = 75/226 (33%), Gaps = 47/226 (20%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           N    ITLD P+  N ++ ++       +    ++  +  ++++      F +G  ++  
Sbjct: 12  NDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLE-- 69

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                D+   ++      + EV       + +I    K  ++L+
Sbjct: 70  ---------------------DLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALI 108

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           +G   G G  +      RI   +       + +G+ PD            G S      +
Sbjct: 109 NGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPD-----------LGASYFLPRII 157

Query: 249 GAY----LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 290
           G      L + GK  ++  +AL  GL  +   +     L+E +   
Sbjct: 158 GYEQTMNLLLEGKLFTSE-EALRLGLIQEICENKQE--LQERVKNY 200

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  100 bits (252), Expect = 4e-24
 Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 55/293 (18%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
           A     G+  FV  +     +A++TL+RP+ +NAM  D+ + +K  L +   D  V+ V+
Sbjct: 14  AQTQGPGSMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVV 73

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE 176
           I G+G + FC+G D K                             TQ  ++        E
Sbjct: 74  ITGAG-KGFCSGADQKSAGP------------------IPHIGGLTQPTIALRSMELLDE 114

Query: 177 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 236
             +I  +    +P I+ ++G  +G G+ ++     R+ ++           GL       
Sbjct: 115 --VILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTA----- 167

Query: 237 YIAAKGPGGGS------VGAY----LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEA 286
                   G S      +G      + +TG+ +    +A   GL +  V S +L  L+E 
Sbjct: 168 -----SELGLSYLLPRAIGTSRASDIMLTGRDVDAD-EAERIGLVSRKVASESL--LEEC 219

Query: 287 L-LAVTFSEDPHQDIVALLAKYS-------SDPEGEAPLKLLLPQITSCFSSE 331
             +    +          L K +       +  E     + L  Q+     ++
Sbjct: 220 YAIGERIAGFSR--PGIELTKRTIWSGLDAASLESHMHQEGLG-QLYVRLLTD 269

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 99.1 bits (248), Expect = 7e-24
 Identities = 50/253 (19%), Positives = 81/253 (32%), Gaps = 52/253 (20%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V VITLD P   N  +  ++   K  L    +D  V+ V++ G   R+F AG D    
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFN-- 65

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                +VK++S    + E I+     Y     +    KP I+ +
Sbjct: 66  ---------------------EVKQLSRSEDIEEWIDRVIDLYQ---AVLNVNKPTIAAV 101

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS-----VG 249
           DG  +G G   +     R++       MPE   G+               G +      G
Sbjct: 102 DGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCS-----------VGAAILGFTHG 150

Query: 250 AYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALL 304
                      + +  P   +   L    V S  L  L  A+  A   +  P      + 
Sbjct: 151 FSTMQEIIYQCQSLDAP-RCVDYRLVNQVVESSAL--LDAAITQAHVMASYPA--SAFIN 205

Query: 305 AKYSSDPEGEAPL 317
            K + +      L
Sbjct: 206 TKRAVNKPFIHLL 218

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score = 99.2 bits (248), Expect = 1e-23
 Identities = 55/252 (21%), Positives = 95/252 (37%), Gaps = 38/252 (15%)

Query: 51  GNSRTFATMAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD 109
           G+   F   AA   E   ++  +  +GVA +TL RP  LNA+  +     +  L E    
Sbjct: 1   GHMSPFTGSAAPTPEWRHLRVEIT-DGVATVTLARPDKLNALTFEAYADLRDLLAELSRR 59

Query: 110 PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEM 169
             V+ +++ G G R FC+G D+  ++                               +  
Sbjct: 60  RAVRALVLAGEG-RGFCSGGDVDEIIGATLSMD------------------------TAR 94

Query: 170 IEVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG 228
           +  F      ++  + E   P I+ + GV  G G  ++    +R+    T  A     +G
Sbjct: 95  LLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVG 154

Query: 229 LFP-DVGFSYIAAK--GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKE 285
           L   D+G +Y+  +  G G       L M G  +  P +A   GL ++    G     + 
Sbjct: 155 LSGGDMGAAYLLPRVVGLG---HATRLLMLGDTVRAP-EAERIGLISELTEEGRA--DEA 208

Query: 286 AL-LAVTFSEDP 296
           A  LA   ++ P
Sbjct: 209 ARTLARRLADGP 220

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score = 98.0 bits (245), Expect = 3e-23
 Identities = 46/201 (22%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV  + ++RP+A NA+  ++ +     LDE + +  V+ V++ G+    F AG D+K  
Sbjct: 13  GGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE-HDFTAGNDMK-- 69

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEY-SLICKISEYKKPYISL 193
                                   +     Q              L+   +   KP I  
Sbjct: 70  ------------------------DFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIA 105

Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG---- 249
           + GV +G G+ I             L  +P   +GL P+ G S +  K       G    
Sbjct: 106 VKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVK-----QAGYHKA 160

Query: 250 AYLGMTGKRISTPSDALFAGL 270
           A L  T K+ +    AL AGL
Sbjct: 161 AELLFTAKKFNAE-TALQAGL 180

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 97.2 bits (243), Expect = 5e-23
 Identities = 44/245 (17%), Positives = 81/245 (33%), Gaps = 43/245 (17%)

Query: 59  MAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           +A+  A    +       GV  IT  R + LNAM   +         + E+   V+ VL+
Sbjct: 2   LASLEARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLL 60

Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEY 177
            G G   F AG                          G    I       E +     E 
Sbjct: 61  RGEG-GVFSAG--------------------------GSFGLIEEMRASHEALLRVFWEA 93

Query: 178 S-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 236
             L+     + +P ++ ++ V +G G+ ++      +V + T L      +G+       
Sbjct: 94  RDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAV 153

Query: 237 YIAAKGPGGGSVG----AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVT 291
            +         VG     Y  +  + ++   +A   GL    V    +   ++AL +A  
Sbjct: 154 LLWPL-----LVGMAKAKYHLLLNEPLTGE-EAERLGLVALAVEDEKV--YEKALEVAER 205

Query: 292 FSEDP 296
            ++ P
Sbjct: 206 LAQGP 210

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score = 96.5 bits (241), Expect = 1e-22
 Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 38/227 (16%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I  +RPK  NA+N +M  +    L     D  +   ++ G+G   + +G D+   
Sbjct: 34  DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLT-- 89

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                +  +I       +           +    ++ KP I+++
Sbjct: 90  ---------------------NFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVV 128

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----A 250
           +G  +G  + + G       +++     P + +G  P+   SY   K      +      
Sbjct: 129 NGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPK-----IMSPAKAT 183

Query: 251 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
            + + GK+++   +A   GL T+  P       KE       F++ P
Sbjct: 184 EMLIFGKKLT-AGEACAQGLVTEVFPDSTF--QKEVWTRLKAFAKLP 227

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 46/214 (21%), Positives = 76/214 (35%), Gaps = 30/214 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV  +TL R  A + ++  M       L     D  V  ++I G G R FCAG D+K  
Sbjct: 15  EGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG-RIFCAGHDLK-- 70

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             EI + R  P   +                 + + ++F A  +L+  ++   KP I+L+
Sbjct: 71  --EIGRHRADPDEGR-----------------AFVTDLFEACSALMLDLAHCPKPTIALV 111

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIA-AKGPGGGSVGAYLG 253
           +G+    G+ +         +      +P    G F       ++   G         + 
Sbjct: 112 EGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRR---AVTEMA 168

Query: 254 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           +TG        AL AGL    +P   L       
Sbjct: 169 LTGATYD-ADWALAAGLINRILPEAAL--ATHVA 199

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score = 95.3 bits (238), Expect = 1e-22
 Identities = 35/233 (15%), Positives = 69/233 (29%), Gaps = 58/233 (24%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           NGV  IT+    + N  +  +    +        + + K V++ G G   F +G   +  
Sbjct: 11  NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFSSGASKE-- 67

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                          L            L   I + + P I+ M
Sbjct: 68  ------------------------------FLIRKTRGEVEVLDLSGLILDCEIPIIAAM 97

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
            G + G G+ +  +  + + +++++ A      G  P            G  S      +
Sbjct: 98  QGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPV-----------GATSLILREKL 146

Query: 249 G----AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
           G      +  TG+      +    G+    V   ++  L  A  L    ++ P
Sbjct: 147 GSELAQEMIYTGENYRGK-ELAERGIPFPVVSRQDV--LNYAQQLGQKIAKSP 196

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 96.1 bits (240), Expect = 2e-22
 Identities = 46/215 (21%), Positives = 84/215 (39%), Gaps = 24/215 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V  + L+RP+  NAMN     +      +   D   + V++ G+G + F +G+D+  +
Sbjct: 12  KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDM 70

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                       + + P           ++ +S   + FT        I +  KP I+ +
Sbjct: 71  ---------ASDILQPPGDDVARIAWYLRDLISRYQKTFTV-------IEKCPKPVIAAI 114

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
            G  +G G+ +      R  T+     + E  +GL  DVG      K  G  S+   L  
Sbjct: 115 HGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTF 174

Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 289
           T +++    +AL +GL +   P       K+ +L 
Sbjct: 175 TARKMM-ADEALDSGLVSRVFPD------KDVMLN 202

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 95.2 bits (238), Expect = 2e-22
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 51/232 (21%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           + +  +     V  I+L+R +  N+++L +  + ++ L +   +   + V++ G+G +AF
Sbjct: 8   QNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAF 67

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISE 185
           CAG D+K                          E +  N+  ++    +   + +  + +
Sbjct: 68  CAGADLK--------------------------ERAGMNE-EQVRHAVSMIRTTMEMVEQ 100

Query: 186 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 245
             +P I+ ++G+ +G G  +S    +RI  E   L + E  + + P  G          G
Sbjct: 101 LPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIP--GA---------G 149

Query: 246 GS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           G+      +G         TG+RIS   +A   GL    VP   L   ++A+
Sbjct: 150 GTQRLPRLIGVGRAKELIYTGRRISA-QEAKEYGLVEFVVPVHLL--EEKAI 198

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 95.4 bits (238), Expect = 3e-22
 Identities = 47/237 (19%), Positives = 77/237 (32%), Gaps = 38/237 (16%)

Query: 48  QTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWE 107
              G          + +E  +  +    GV  +TL+RP+A NA++  M            
Sbjct: 7   HHMGTLEAQTQGPGSMSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLA 66

Query: 108 SDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167
            D  V+ V++  SG  AFCAG D+                          KE+  +    
Sbjct: 67  EDESVRAVVLAASGK-AFCAGHDL--------------------------KEMRAEPSRE 99

Query: 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 227
              ++F     ++  I     P I+ + G+    G  +       + T     A+    +
Sbjct: 100 YYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINV 159

Query: 228 GLFPDVGFSYIAAKGPGGGSVGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNL 280
           GLF       ++        VG         TG+ +S   DA   GL    V    L
Sbjct: 160 GLFCSTPGVALSRN------VGRKAAFEMLVTGEFVS-ADDAKGLGLVNRVVAPKAL 209

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score = 94.2 bits (235), Expect = 6e-22
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 37/215 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVAV+TL  P   N+  +++  +  +     + DP V+ +++ G+   AFC+G  I   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAP-PAFCSGAQISAA 73

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                    T   P+ P                           +     E + P I+ +
Sbjct: 74  -------AETFAAPRNPDFSAS---------------------PVQPAAFELRTPVIAAV 105

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK--GPGGGSVGAYL 252
           +G  +G G+ ++ H   RI+ E+   A+P+   G+ PD    +   +  G    +V A L
Sbjct: 106 NGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGT---AVAAEL 162

Query: 253 GMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
            +TG   S    A+  GL    +P+G +  L  AL
Sbjct: 163 LLTGASFS-AQRAVETGLANRCLPAGKV--LGAAL 194

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score = 94.2 bits (235), Expect = 6e-22
 Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 42/237 (17%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
             ++     +GV  + LD P  LN++   M           + DP V+ VL+ G G +AF
Sbjct: 13  PSLRFEPGEHGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG-KAF 70

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYS-LICKIS 184
            +G                          G  + I       E       E   L+  + 
Sbjct: 71  SSG--------------------------GSFELIDETIGDYEGRIRIMREARDLVLNLV 104

Query: 185 EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 244
              KP +S + G  +G G+ ++      + +    +      +G+      +        
Sbjct: 105 NLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPL--- 161

Query: 245 GGSVG----AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
              VG     Y  +T + +S   +A   GL +  V    +  L  A  LA   ++  
Sbjct: 162 --LVGMAKAKYYLLTCETLSGE-EAERIGLVSTCVDDDEV--LPTATRLAENLAQGA 213

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 38/206 (18%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V  IT  RP+A N +N  +  +    L++ E+   V  V++EG     FC G D + +
Sbjct: 15  ASVCYITFHRPEANNTINDTLIEECLQVLNQCETST-VTVVVLEGLP-EVFCFGADFQEI 72

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E+++ R               K+ S+Q  L ++            K+       IS +
Sbjct: 73  YQEMKRGR---------------KQASSQEPLYDLWM----------KLQTGPYVTISHV 107

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA---- 250
            G     G+G        I  +    ++ E   GL+P     ++  +      +G     
Sbjct: 108 RGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVLPFLIRR------IGRQKAH 161

Query: 251 YLGMTGKRISTPSDALFAGLGTDYVP 276
           Y+ +  K IS   +A   GL   +  
Sbjct: 162 YMTLMTKPIS-VQEASEWGLIDAFDA 186

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 93.0 bits (232), Expect = 1e-21
 Identities = 41/207 (19%), Positives = 74/207 (35%), Gaps = 50/207 (24%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             + +ITL+RP +LN++N D+ +           DP  +  +I G+G RAF AG      
Sbjct: 36  GALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAG------ 88

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYS-LICKISEYKKPYISL 193
                               GD   +   +  +++      +   ++  ++  + P ++ 
Sbjct: 89  --------------------GDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAA 128

Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------ 247
           ++G  +G G  +        + E   LA P   +GL               GG       
Sbjct: 129 VNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAA-----------DGGPLTWPLH 177

Query: 248 VG----AYLGMTGKRISTPSDALFAGL 270
           +         +TG RIS    A+  GL
Sbjct: 178 ISLLLAKEYALTGTRISAQ-RAVELGL 203

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 92.6 bits (231), Expect = 2e-21
 Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 51/225 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            G+ V+ ++R    N+++ ++       +D  +SD +V+ ++I    P  FCAG D+K  
Sbjct: 20  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK-- 77

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                   E +  +  SE+    +   ++I  I+    P I+ +
Sbjct: 78  ------------------------ERAKMSS-SEVGPFVSKIRAVINDIANLPVPTIAAI 112

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           DG+ +G G+ ++     R+      + + E  + + P  G          GG+      +
Sbjct: 113 DGLALGGGLELALACDIRVAASSAKMGLVETKLAIIP--GG---------GGTQRLPRAI 161

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGS--LKEAL 287
           G  L      + + +    +A   GL +  +     G    ++AL
Sbjct: 162 GMSLAKELIFSARVLDG-KEAKAVGLISHVLEQNQEGDAAYRKAL 205

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 91.5 bits (228), Expect = 3e-21
 Identities = 51/223 (22%), Positives = 85/223 (38%), Gaps = 61/223 (27%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V  +TL+RP++ NA++ ++   +   L + ++D  V  V++ G+    FCAG+D+K  
Sbjct: 17  DRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGAD-PVFCAGLDLK-- 73

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                            E+ +  T    +  K  +  KP I  +
Sbjct: 74  ---------------------------------ELGDT-TELPDISPKWPDMTKPVIGAI 99

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           +G  +  G+ ++ +    I +E    A     +GL P             G S      V
Sbjct: 100 NGAAVTGGLELALYCDILIASENAKFADTHARVGLMPT-----------WGLSVRLPQKV 148

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           G  L      TG  +S   DAL AGL T+ V   +L  L  A 
Sbjct: 149 GVGLARRMSLTGDYLS-AQDALRAGLVTEVVAHDDL--LTAAR 188

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 90.7 bits (226), Expect = 7e-21
 Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 50/223 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VAV+ L+ P+  N ++ +M +     LD+ E+DP V+ V++ G G +AF AG D+   
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLA-- 63

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
              +++                     T+    E      +   L  ++  Y KP ++ +
Sbjct: 64  --FLER--------------------VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAV 101

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           +G  +  G G++      ++ E+  L   E  IG                  S      V
Sbjct: 102 NGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFV------------AALVSVILVRAV 149

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           G         TG+ +    +A   GL     P G    L+EA 
Sbjct: 150 GEKAAKDLLLTGRLVEA-REAKALGLVNRIAPPGKA--LEEAK 189

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 91.6 bits (228), Expect = 7e-21
 Identities = 41/256 (16%), Positives = 85/256 (33%), Gaps = 40/256 (15%)

Query: 48  QTSGNSRTFATMAAAGAEEF--VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDE 105
            +  +    + +   G+  +  +          ++   R    NA+N ++  +  + L+ 
Sbjct: 3   SSHHHHHHSSGLVPRGSSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNS 62

Query: 106 WESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQ 165
             +D   K VL   +G   FC G+D    V  ++ +RNT               +   + 
Sbjct: 63  AAADD-SKLVLFSAAG-SVFCCGLDFGYFVKHLRNNRNTA-------------SLEMVDT 107

Query: 166 LSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 225
           +   +              ++KKP +  ++G  +G G  I          EK     P  
Sbjct: 108 IKNFVN----------TFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYT 157

Query: 226 GIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKRISTPSDALFAGLGTDYVPSGNLG 281
             G  PD   S    K      +G      + + G++++   +A   GL +    +G   
Sbjct: 158 TFGQSPDGCSSITFPK-----MMGKASANEMLIAGRKLTA-REACAKGLVSQVFLTGTF- 210

Query: 282 SLKEAL-LAVTFSEDP 296
             +E +      +   
Sbjct: 211 -TQEVMIQIKELASYN 225

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 90.7 bits (226), Expect = 1e-20
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 46/224 (20%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
              A ITL+RP ALNA++  M  + ++   E E+D RV  +++ G+G RAFC+G D+K  
Sbjct: 19  GHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVK-- 75

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             EI                 +  ++  +       + + A            KP ++ +
Sbjct: 76  --EIP----------------EDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAV 117

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           +G+  G G+         I +E+     P   IGL              G         +
Sbjct: 118 NGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLV------------AGRELVRVSRVL 165

Query: 249 GAYLGM----TGKRISTPSD-ALFAGLGTDYVPSGNLGSLKEAL 287
              + +     GK     +  A   GL ++ V    L  L+ A 
Sbjct: 166 PRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRL--LERAH 207

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 89.9 bits (224), Expect = 1e-20
 Identities = 51/245 (20%), Positives = 98/245 (40%), Gaps = 57/245 (23%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V +I L RP  LNA++  M  +  + ++ ++ + +V+ +++ G G RAF AG DI   
Sbjct: 13  GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RAFAAGADI--- 68

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                  +E++  + +        A++    ++S  K P I+ +
Sbjct: 69  -----------------------QEMAKDDPIRLEWLNQFADWD---RLSIVKTPMIAAV 102

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           +G+ +G G  ++      + +       PE  +G+ P  G          GG+      +
Sbjct: 103 NGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMP--GA---------GGTQRLTKLI 151

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVAL 303
           G    +    TG R+S   +A   G+    V    L  ++E + LA   +E P   +   
Sbjct: 152 GPKRALEWLWTGARMSA-KEAEQLGIVNRVVSPELL--MEETMRLAGRLAEQPP--LALR 206

Query: 304 LAKYS 308
           L K +
Sbjct: 207 LIKEA 211

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 43/264 (16%), Positives = 77/264 (29%), Gaps = 47/264 (17%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
            +M+       V      + + VI +D  K +N +   M       +D  + D  V  ++
Sbjct: 1   GSMS-----GPVTYTHD-DAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRDN-VGALV 52

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE 176
           I G+  R F  G D+K                           +++       I++    
Sbjct: 53  IAGNH-RVFSGGFDLK--------------------------VLTSGEA-KPAIDMLRGG 84

Query: 177 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 236
           + L  ++  Y KP +    G  +  G  +   G +R+      +   E  IG+       
Sbjct: 85  FELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAM 144

Query: 237 YIAAK--GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFS 293
            +      P   S         K       AL AG   +      +  L  A   A  F+
Sbjct: 145 EVLKLRLTP---SAYQQAAGLAKTFF-GETALAAGFIDEISLPEVV--LSRAEEAAREFA 198

Query: 294 EDPHQDIVALLAKYSSDPEGEAPL 317
                       K  +  E    +
Sbjct: 199 GLNQ--QAHNATKLRARAEALKAI 220

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 38/230 (16%)

Query: 72  VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
                  ++   +    N++N ++  + +S L    +D   K VL+   G   FC G+D 
Sbjct: 11  KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVG-SVFCCGLDF 68

Query: 132 KGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYI 191
              +  +  DR                        ++M E        +    ++KKP I
Sbjct: 69  IYFIRRLTDDRKRES--------------------TKMAEAIRN---FVNTFIQFKKPII 105

Query: 192 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG-- 249
             ++G  +G G  I          EK     P    G  PD   + +  K      +G  
Sbjct: 106 VAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPK-----IMGGA 160

Query: 250 --AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
               + ++G++++   +A   GL +     G     +E +      +   
Sbjct: 161 SANEMLLSGRKLTAQ-EACGKGLVSQVFWPGTF--TQEVMVRIKELASCN 207

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 89.2 bits (222), Expect = 3e-20
 Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 49/231 (21%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           E +  +   NG+  + +    +          ++     +   D   + V++ GSG  A+
Sbjct: 23  ENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG-DAW 81

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISE 185
            A                            D   +       E  + +     ++  + +
Sbjct: 82  MAE--------------------------IDFPSLGDVTNPREWDKTYWEGKKVLQNLLD 115

Query: 186 YKKPYISLMDGVTMGFGIGISGHGRY------RIVTEKTLLA-MPENGIGLFPDVGFSYI 238
            + P IS ++G  +        H  Y       + +E T+   MP    G+ P  G   +
Sbjct: 116 IEVPVISAVNGAAL-------LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHIL 168

Query: 239 AAK--GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
                G      G Y   T ++++    A    +  + +P   L  ++ A 
Sbjct: 169 WPLALGLY---RGRYFLFTQEKLT-AQQAYELNVVHEVLPQSKL--MERAW 213

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 89.1 bits (222), Expect = 3e-20
 Identities = 43/256 (16%), Positives = 85/256 (33%), Gaps = 57/256 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GVAV+    P  +N+++L+   +    L++ E+D   + V++    P  F AG+D+   
Sbjct: 13  AGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDL--- 68

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                   E+  ++  +     + A   L  ++ +     +S +
Sbjct: 69  -----------------------TEMCGRSP-AHYAGYWKAVQELWLRLYQSNLVLVSAI 104

Query: 195 DGVTMGFGIGISGHGRYRIVTE--KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS----- 247
           +G     G  ++    YRI+ +  +  + + E  +G+             P         
Sbjct: 105 NGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIA-----------PFWLKDTLEN 153

Query: 248 -VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIV 301
            +G          G     P++AL  G+    VP   +     AL     +   P  D  
Sbjct: 154 TIGHRAAERALQLGLLFP-PAEALQVGIVDQVVPEEQV--QSTALSAIAQWMAIP--DHA 208

Query: 302 ALLAKYSSDPEGEAPL 317
             L K        + L
Sbjct: 209 RQLTKAMMRKATASRL 224

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 89.6 bits (223), Expect = 3e-20
 Identities = 46/222 (20%), Positives = 81/222 (36%), Gaps = 50/222 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I L  PK  N ++L M    +S +        +K ++I   GP  F +G D+   
Sbjct: 41  DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP-VFSSGHDL--- 96

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                  KE++ +       EVF     ++  I  +  P I+++
Sbjct: 97  -----------------------KELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMV 133

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS-----VG 249
           +G+    G  +       + ++K+  A P   +GLF               G      V 
Sbjct: 134 NGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFC--ST---------PGVALARAVP 182

Query: 250 AYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
             + +    TG+ IS   +AL  GL +  VP   L   +E +
Sbjct: 183 RKVALEMLFTGEPISA-QEALLHGLLSKVVPEAEL--QEETM 221

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 89.1 bits (222), Expect = 3e-20
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 36/210 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V ++T++R    NA +  +  + +  LD   +D  V+ ++++ +G + F AG D+  +
Sbjct: 12  DKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG-KHFSAGADLTWM 70

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
            +         L                   L  ++            IS+  KP I+++
Sbjct: 71  QSMANFTEEENL--------------EDSLVLGNLMY----------SISQSPKPTIAMV 106

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY--- 251
            G   G G G++      I +        E  +GL P V   Y+         +G     
Sbjct: 107 QGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRA------IGERAAK 160

Query: 252 -LGMTGKRISTPSDALFAGLGTDYVPSGNL 280
            L M+ +     + A    L    VP   L
Sbjct: 161 MLFMSAEVFDA-TRAYSLNLVQHCVPDDTL 189

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 89.2 bits (222), Expect = 3e-20
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 26/196 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VA +TL+ P   NA++  +  +    L +  SDP V+ V++  +G   FCAG D+   
Sbjct: 19  GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEA 77

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
            +         +  +   +                         L+  I E + P I+ +
Sbjct: 78  GSGGSPSSAYDMAVERAREMAA----------------------LMRAIVESRLPVIAAI 115

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           DG     G G+ G     +   ++  A+ E  IG+ P +    +  K        A   +
Sbjct: 116 DGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPK--LSARAAARYYL 173

Query: 255 TGKRISTPSDALFAGL 270
           TG++      A   GL
Sbjct: 174 TGEKFDAR-RAEEIGL 188

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 88.3 bits (220), Expect = 5e-20
 Identities = 42/223 (18%), Positives = 71/223 (31%), Gaps = 51/223 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V VI L+RP   NA +  M  +    L E+E+D  ++  ++ G G   F AG+D+   
Sbjct: 17  GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEG-PLFTAGLDLA-- 73

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                    ++ + Q    +              +  KP +  +
Sbjct: 74  ------------------------SVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAV 109

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
            G  +  GI ++      I  E    A  E   G++P            GG +       
Sbjct: 110 HGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPF-----------GGATIRFPRTA 158

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           G    M    T        +A   G+  + VP G    +  A+
Sbjct: 159 GWGNAMRWMLTADTFDAV-EAHRIGIVQEIVPVGEH--VDTAI 198

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 90.7 bits (225), Expect = 7e-20
 Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 44/231 (19%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--------GPRAFC 126
           +GVA +T+ R   LNA +       ++ +D    DP V+  L+ G         G R F 
Sbjct: 175 DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFS 234

Query: 127 AGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEY 186
           AG+++K     + +   + +   +  + G + ++      ++    +             
Sbjct: 235 AGINLK----YLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWW-------HSPRI 283

Query: 187 KKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 246
           +KP+++ +DG  +G G  +       + +     ++P    G+             PG  
Sbjct: 284 EKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGII------------PGAA 331

Query: 247 S------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           +       G  +       G+RI    +     L  + V    L       
Sbjct: 332 NLRLGRFAGPRVSRQVILEGRRIWA-KEPEARLLVDEVVEPDEL--DAAIE 379

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 88.0 bits (219), Expect = 8e-20
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 47/223 (21%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK-- 73

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             E  +                 + +  + +       +         +  Y KP I+++
Sbjct: 74  --EYFR-----------EVDAGPEILQEKIRREASQWQWK-------LLRMYAKPTIAMV 113

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           +G   G G          I  ++    + E   G+ P               S      V
Sbjct: 114 NGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPG-----------NLVSKAMADTV 162

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           G    +    TGK       A   GL  + VP   L   +  +
Sbjct: 163 GHRQSLMYIMTGKTFGG-QKAAEMGLVNESVPLAQL--REVTI 202

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 88.0 bits (219), Expect = 9e-20
 Identities = 66/276 (23%), Positives = 109/276 (39%), Gaps = 62/276 (22%)

Query: 53  SRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRV 112
           ++   +M      E +        V +ITL+RP+ALNA+N  +  +  S   E + DP +
Sbjct: 16  TQGPGSMT----YETILVERD-QRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDI 70

Query: 113 KCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEV 172
             ++I GS  +AF AG DI                          KE++           
Sbjct: 71  GAIIITGSA-KAFAAGADI--------------------------KEMADLTFADAFTAD 103

Query: 173 FTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD 232
           F A +    K++  + P I+ + G  +G G  ++      I  +      PE  +G+ P 
Sbjct: 104 FFATWG---KLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLP- 159

Query: 233 VGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGS 282
            G          GGS      +G    M    TG+ +   ++A  +GL +  VP+ +L  
Sbjct: 160 -GM---------GGSQRLTRAIGKAKAMDLILTGRTMDA-AEAERSGLVSRVVPADDL-- 206

Query: 283 LKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPL 317
           L EA   A T S+       A +AK + +   E+ L
Sbjct: 207 LTEARATATTISQMSA--SAARMAKEAVNRAFESSL 240

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 87.2 bits (217), Expect = 1e-19
 Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 59/246 (23%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G   +AF AG DI   
Sbjct: 15  SSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADI--- 70

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEY-SLICKISEYKKPYISL 193
                                  KE+  +       + ++ ++ S    I+  KKP I+ 
Sbjct: 71  -----------------------KEMQNRT----FQDCYSGKFLSHWDHITRIKKPVIAA 103

Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------ 247
           ++G  +G G  ++         EK     PE  +G  P  G          GG+      
Sbjct: 104 VNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIP--GA---------GGTQRLTRA 152

Query: 248 VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVA 302
           VG  L M    TG RIS   DA  AGL +   P   L  ++EA+  A   + +    I+ 
Sbjct: 153 VGKSLAMEMVLTGDRISA-QDAKQAGLVSKIFPVETL--VEEAIQCAEKIANNSK--IIV 207

Query: 303 LLAKYS 308
            +AK S
Sbjct: 208 AMAKES 213

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 86.8 bits (216), Expect = 2e-19
 Identities = 57/270 (21%), Positives = 101/270 (37%), Gaps = 57/270 (21%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
             +      +  +    GV +I LDRP ALNA+N  ++ +      ++++D  +  +++ 
Sbjct: 2   PGSMTTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVT 61

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYS 178
           GS  RAF AG DI                           E+ T            + + 
Sbjct: 62  GSE-RAFAAGADIA--------------------------EMVTLTPHQARERNLLSGWD 94

Query: 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 238
               +++ +KP ++ + G  +G G  ++      I  +      PE  +G+ P  G    
Sbjct: 95  ---SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILP--GL--- 146

Query: 239 AAKGPGGGS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL- 287
                 GG+      VG    M    TG+ ++   +A   GL +  VP+ +L  L EAL 
Sbjct: 147 ------GGTQRLTRAVGKAKAMDLCLTGRSLTA-EEAERVGLVSRIVPAADL--LDEALA 197

Query: 288 LAVTFSEDPHQDIVALLAKYSSDPEGEAPL 317
           +A   +            K + +   E PL
Sbjct: 198 VAQRIARMSR--PAGRAVKDAINEAFERPL 225

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 87.2 bits (216), Expect = 4e-19
 Identities = 40/224 (17%), Positives = 62/224 (27%), Gaps = 35/224 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFCAG 128
           +    +  +RP+  NA       +    LD     P V  VL+ G+GP       AFC+G
Sbjct: 65  DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSG 124

Query: 129 MDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKK 188
            D +     I+                DV      + L            +   I    K
Sbjct: 125 GDQR-----IRGRSGYQYASGDTADTVDVARAGRLHIL-----------EVQRLIRFMPK 168

Query: 189 PYISLMDGVTMGFGIGISGHGRYRIV-TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 247
             I L++G   G G  +       +   E       +  +G F     S   A+      
Sbjct: 169 VVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLAR-----Q 223

Query: 248 VGA----YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           VG      +   G+  +        G          L      L
Sbjct: 224 VGQKFAREIFFLGRTYT-AEQMHQMGAVNAVAEHAEL--ETVGL 264

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 86.0 bits (214), Expect = 4e-19
 Identities = 45/241 (18%), Positives = 92/241 (38%), Gaps = 55/241 (22%)

Query: 59  MAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           M A   + +++      +G+A I L   K+ N+ +L+   ++ + +D+   DP +K V++
Sbjct: 1   MTAVETKKQYLTVFKE-DGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIV 58

Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEY 177
               P+ F AG DI                            + + +      +      
Sbjct: 59  MSDVPKFFSAGADI--------------------------NFLRSADP-RFKTQFCLFCN 91

Query: 178 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTL-LAMPENGIGLFPDVGFS 236
             + KI+   + YI+ ++G T+G G+ ++     R + ++   + +PE  +G+    G  
Sbjct: 92  ETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLA--GT- 148

Query: 237 YIAAKGPGGGS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEA 286
                   GG+      +G    +    TG+ I+ P +AL  GL     P       +  
Sbjct: 149 --------GGTQRLARLIGYSRALDMNITGETIT-PQEALEIGLVNRVFPQAET--RERT 197

Query: 287 L 287
            
Sbjct: 198 R 198

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 85.3 bits (212), Expect = 5e-19
 Identities = 36/265 (13%), Positives = 71/265 (26%), Gaps = 56/265 (21%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
                 TL RP+  NA++ ++       +D      +V  ++  G+G R F AG D    
Sbjct: 15  PAAWTFTLSRPEKRNALSAELVEALIDGVDAAH-REQVPLLVFAGAG-RNFSAGFDFT-- 70

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                   +  TQ++  +++        L+ +++      ++L 
Sbjct: 71  ------------------------DYETQSE-GDLLLRMVRIEMLLQRVAGSPSLTLALA 105

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD-------VGFSYIAAKGPGGGS 247
            G   G G+ +    ++R  T +    MP    GL          VG     A       
Sbjct: 106 HGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGAD--QAL------ 157

Query: 248 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAK 306
               +  + +      +A   G   D                A   +             
Sbjct: 158 ---SILGSARAFDAD-EARRIGFVRDCAAQAQW--PALIDAAAEAATALD--PATRATLH 209

Query: 307 YSSDPEGEAPLKLLLPQITSCFSSE 331
                + +      L       +  
Sbjct: 210 RVLRDDHDDADLAAL---ARSAAQP 231

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 85.3 bits (212), Expect = 6e-19
 Identities = 36/231 (15%), Positives = 70/231 (30%), Gaps = 59/231 (25%)

Query: 52  NSRTFATMAAA--GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD 109
           +     T+ A   G    +        V  I L RP+  NA+N  +  +    + +   D
Sbjct: 5   HHHHMGTLEAQTQGPGSMIGITQA-EAVLTIELQRPERRNALNSQLVEELTQAIRK-AGD 62

Query: 110 PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEM 169
              + +++ G G  AFCAG D+                                   +  
Sbjct: 63  GSARAIVLTGQG-TAFCAGADLS--------------------------------GDAFA 89

Query: 170 IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL 229
            +       L   +     P +  ++G  +G G+ ++     R+V        P +  GL
Sbjct: 90  ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGL 149

Query: 230 FPDVGFSYIAAKGPGGGS------VGAY----LGMTGKRISTPSDALFAGL 270
             D                     VG      + ++ ++++    AL  G+
Sbjct: 150 ALD-----------NWSIRRLSSLVGHGRARAMLLSAEKLTA-EIALHTGM 188

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 85.3 bits (212), Expect = 7e-19
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
             V VIT++RP+A NA+N  + I     L+E + DP V+ V++ G+G ++FCAG D+K
Sbjct: 17  GNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLK 74

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 85.0 bits (211), Expect = 7e-19
 Identities = 37/226 (16%), Positives = 64/226 (28%), Gaps = 39/226 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV ++T+               +      +   D   K V++ G+G  +FC        
Sbjct: 24  GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNE------ 76

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                D    +      +  E+      L+  +   + P I+ +
Sbjct: 77  --------------------IDFTSFNLGTP-HDWDEIIFEGQRLLNNLLSIEVPVIAAV 115

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLA-MPENGIGLFPDVGFSYIAAK--GPGGGSVGAY 251
           +G        I       +  E       P    G+ P  G   +     G      G Y
Sbjct: 116 NGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSN---RGRY 171

Query: 252 LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 296
             +TG+ +     AL  G   + +    L  L  A  LA   +E P
Sbjct: 172 FLLTGQELD-ARTALDYGAVNEVLSEQEL--LPRAWELARGIAEKP 214

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 85.0 bits (211), Expect = 7e-19
 Identities = 49/241 (20%), Positives = 80/241 (33%), Gaps = 56/241 (23%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
            +M+    +  V+       V  + L+RP A NA++        +   E+++DP     +
Sbjct: 3   GSMSEE-MQPAVRVEKA-GPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAV 60

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE 176
           + G     FCAG D+K     +  DR   L P  P   G                     
Sbjct: 61  LWGDN-GTFCAGADLK----AMGTDRGNELHPHGPGPMGP-------------------- 95

Query: 177 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 236
                      KP I+ + G  +  GI ++     R+V E  +L +     G+       
Sbjct: 96  -----SRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLI---- 146

Query: 237 YIAAKGPGGGS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEA 286
                   GG+      +G    M    TG+ +    +AL  GL    V  G     + A
Sbjct: 147 -------DGGTIRLPRLIGHSRAMDLILTGRPVHAN-EALDIGLVNRVVARGQA--REAA 196

Query: 287 L 287
            
Sbjct: 197 E 197

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 84.9 bits (211), Expect = 8e-19
 Identities = 41/224 (18%), Positives = 66/224 (29%), Gaps = 53/224 (23%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             + +I LDR    NA +  M       + E+E     +C ++   G   F AG+D+  +
Sbjct: 20  GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHG-EHFTAGLDLMEL 78

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             ++                                +     + ++       KP +  +
Sbjct: 79  APKLAASGFRYP------------------------DGGVDPWGVV--QPRRSKPLVVAV 112

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------- 247
            G     GI +  +    +    T  A  E   G+             P GGS       
Sbjct: 113 QGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIP------------PLGGSTVRFPRA 160

Query: 248 VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
            G    M    TG       +AL   L T+ V  G    L  AL
Sbjct: 161 AGWTDAMRYILTGDEFDAD-EALRMRLLTEVVEPGEE--LARAL 201

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 49/247 (19%), Positives = 84/247 (34%), Gaps = 54/247 (21%)

Query: 53  SRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRV 112
             T  T A   +              ++T++RP   NA++ +M        D  ++DP +
Sbjct: 7   PNTSETPANGESGPDALVEQR-GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDI 65

Query: 113 KCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEV 172
           +C ++ G+G   FCAGMD+K                            + +       + 
Sbjct: 66  RCCILTGAG-GYFCAGMDLK--------------------------AATKKPPGDSFKDG 98

Query: 173 FTAEYSLIC--KISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF 230
                 +    K    KKP I+ ++G  +  G  I      R+  E     + E    L+
Sbjct: 99  SYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLY 158

Query: 231 PDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNL 280
           P            GG +      +   +      TG+ I+  ++A   GL    VP G  
Sbjct: 159 PM-----------GGSAVRLVRQIPYTVACDLLLTGRHITA-AEAKEMGLVGHVVPDGQA 206

Query: 281 GSLKEAL 287
             L +AL
Sbjct: 207 --LTKAL 211

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 46/246 (18%), Positives = 74/246 (30%), Gaps = 51/246 (20%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA I LD P  +N +   M  + ++ L     D  V+ ++   + P  F A +D++  
Sbjct: 17  HGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMR-- 73

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
               +K           +        S    ++    V          I    +  I  +
Sbjct: 74  --IGEK-----------MDALQELAASAPADVNVFQAVGE-------LIRHQPQVTIVKL 113

Query: 195 DGVTMGFGIGISGHGRYRIV-TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------ 247
            G   G G              E   L   E  +G+ P  G          GG+      
Sbjct: 114 AGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIP--GG---------GGTQYLRGR 162

Query: 248 VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVA 302
           VG    +    T         A   G     +P+  L   +    +A   +  P  D V 
Sbjct: 163 VGRNRALEVVLTADLFDA-ETAASYGWINRALPADEL--DEYVDRVARNIAALP--DGVI 217

Query: 303 LLAKYS 308
             AK S
Sbjct: 218 EAAKRS 223

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 84.5 bits (210), Expect = 1e-18
 Identities = 43/223 (19%), Positives = 77/223 (34%), Gaps = 51/223 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V ++T++RP   NA++ +M  ++ +  DE + D  ++  ++ G+G  A+C G D+   
Sbjct: 17  GPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLS-- 73

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                   +       S            +       KP I+ +
Sbjct: 74  ------------------------DGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAV 109

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           +G  +G G  +      R+  E     +PE   GL P  G          G        +
Sbjct: 110 NGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVP--GA---------GSMVRLKRQI 158

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
                M    TG+ ++   +A   GL    VP+G    L +A 
Sbjct: 159 PYTKAMEMILTGEPLTAF-EAYHFGLVGHVVPAGTA--LDKAR 198

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 54/245 (22%), Positives = 86/245 (35%), Gaps = 55/245 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + +AV TL+   A NAM+  +       +D+ E D  ++ V+I G G R F AG DI   
Sbjct: 14  DHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADI--- 68

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                  KE ++  +  +  E+         ++ +  KP I+ +
Sbjct: 69  -----------------------KEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAI 105

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
            G  +G G+  +     R  TE   L +PE  +GL P  GF          G+      V
Sbjct: 106 HGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIP--GF---------AGTQRLPRYV 154

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVAL 303
           G         T   I+  ++AL  GL            L + L +A   +        A 
Sbjct: 155 GKAKACEMMLTSTPITG-AEALKWGLVNGVFAEETF--LDDTLKVAKQIAGKSP--ATAR 209

Query: 304 LAKYS 308
                
Sbjct: 210 AVLEL 214

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 83.8 bits (208), Expect = 3e-18
 Identities = 53/277 (19%), Positives = 86/277 (31%), Gaps = 57/277 (20%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
            +    T       EFV       G+A + + RP   NAM   +  +  +  DE      
Sbjct: 10  GTLEAQTQGPGSMNEFVSVVAD-QGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDD 67

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIE 171
           +  V++ G     F AG D+                           E+ T N   E   
Sbjct: 68  IGAVVLFGGH-EIFSAGDDMP--------------------------ELRTLN-APEADT 99

Query: 172 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP 231
                   I  ++   KP ++ + G  +G G+ ++    +R+  +       E   GL P
Sbjct: 100 AARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIP 159

Query: 232 DVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLG 281
             G          GG       VG+        +G+      +AL  GL  D V   ++ 
Sbjct: 160 --GG---------GGMGRLTRVVGSSRAKELVFSGRFFDA-EEALALGLIDDMVAPDDV- 206

Query: 282 SLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPL 317
               A+  A  + E P        AK   +   E   
Sbjct: 207 -YDSAVAWARRYLECPP--RALAAAKAVINDVFELEA 240

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 83.8 bits (208), Expect = 3e-18
 Identities = 43/262 (16%), Positives = 77/262 (29%), Gaps = 54/262 (20%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           M+   + E +K  +    V   T + P  +N +  ++     + L+E       + V+ +
Sbjct: 1   MSLTASYETIKARLD-GTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFD 58

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYS 178
            +    F   +D+     ++  +                K     +    +  +F     
Sbjct: 59  SADADFFFPHVDMT----KVP-EYTAE----------AAKAGGPGDA--SLGMLFR---- 97

Query: 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV-TEKTLLAMPENGIGLFPDVGFSY 237
              K+S+     I+ + G   G G         R    E  +L  PE GIG  P  G   
Sbjct: 98  ---KLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPP--GA-- 150

Query: 238 IAAKGPGGGS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
                  G        +G    +    T         A   G     VP   L   +   
Sbjct: 151 -------GAIQHLTRLLGRGRALEAVLTSSDFD-ADLAERYGWVNRAVPDAEL--DEFVA 200

Query: 288 -LAVTFSEDPHQDIVALLAKYS 308
            +A   S  P      + AK +
Sbjct: 201 GIAARMSGFPR--DALIAAKSA 220

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 83.4 bits (207), Expect = 4e-18
 Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 54/223 (24%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V  I L+RPK  NA+N  +    K  L +     +++ V+I G G   F AG+D+   
Sbjct: 24  GPVLTIGLNRPKKRNALNDGLMAALKDCLTD--IPDQIRAVVIHGIG-DHFSAGLDLS-- 78

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                   E+  ++  +E +      + +  KI   + P I+ +
Sbjct: 79  ------------------------ELRERD-ATEGLVHSQTWHRVFDKIQYCRVPVIAAL 113

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
            G  +G G+ ++     R+       A+PE   G+F   G          GGS      +
Sbjct: 114 KGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFV--GG---------GGSVRLPRLI 162

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           G         TG+  S   + +  G     + +G+     +AL
Sbjct: 163 GVARMADMMLTGRVYSAA-EGVVHGFSQYLIENGSA--YDKAL 202

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 45/249 (18%), Positives = 75/249 (30%), Gaps = 48/249 (19%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA +TL+  K +NA++ D+ I + + LD+ E D  +   +I    P     G D+K  
Sbjct: 14  DGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDRAI---VIVTGQPGILSGGYDLK-- 67

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
              +                     I+   Q S +            ++  +  P I   
Sbjct: 68  --VMTS--------------SAEAAINLVAQGSTLAR----------RMLSHPFPIIVAC 101

Query: 195 DGVTMGFGIGISGHGRYRI-VTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 253
            G  +  G  +     YRI V     + + E  IG+        +A        +     
Sbjct: 102 PGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARD-----RLRKSAF 156

Query: 254 M----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS 308
                  +    P  A+ AG     V    L     AL +A    +           K  
Sbjct: 157 NRSVINAEMFD-PEGAMAAGFLDKVVSVEEL--QGAALAVAAQLKKINM--NAHKKTKLK 211

Query: 309 SDPEGEAPL 317
                   L
Sbjct: 212 VRKGLLDTL 220

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 81.4 bits (202), Expect = 1e-17
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 57/223 (25%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + + +IT++RPKA N++N  +       +D  ++D  +   ++ G+G  +FCAGMD+K  
Sbjct: 23  DRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLK-- 79

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                           +    V      L        KP I+ +
Sbjct: 80  ------------------------------AFARGENVVVEGRGLGFTERPPAKPLIAAV 109

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           +G  +  G  ++      +    +   +PE   GL              GGG       +
Sbjct: 110 EGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAG-----------GGGLLRLPERI 158

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
              + M    TG  +S    A   G+       G    L  A+
Sbjct: 159 PYAIAMELALTGDNLSA-ERAHALGMVNVLAEPGAA--LDAAI 198

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 81.0 bits (201), Expect = 1e-17
 Identities = 43/223 (19%), Positives = 71/223 (31%), Gaps = 58/223 (26%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V +IT++RP A NA+N  +     +  D+ +S   +   +I G+G   FCAGMD+   
Sbjct: 15  DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFCAGMDL--- 70

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                  K   +   +     +              +KP I+ +
Sbjct: 71  -----------------------KAFVSGEAVLSERGLGFTNVPP-------RKPIIAAV 100

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
           +G  +  G  +       +        +PE   GL               GG       +
Sbjct: 101 EGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAG-----------AGGLLRLPNRI 149

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
              + M    TG+  +   DA   G     V  G    L  AL
Sbjct: 150 PYQVAMELALTGESFTA-EDAAKYGFINRLVDDGQA--LDTAL 189

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 50/279 (17%), Positives = 94/279 (33%), Gaps = 65/279 (23%)

Query: 72  VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
              +G+A IT++RP+  NA       +    L +   D  +  +++ G+G +AFC+G D 
Sbjct: 33  KSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQ 92

Query: 132 KGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYI 191
           K                          +  +      +++          +I    KP +
Sbjct: 93  K----VRGDY--------------GGYKDDSGVHHLNVLDFQR-------QIRTCPKPVV 127

Query: 192 SLMDGVTMGFGIGISGHG-----RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 246
           +++ G ++G G    GH         I  +  +       +G F             G G
Sbjct: 128 AMVAGYSIG-G----GHVLHMMCDLTIAADNAIFGQTGPKVGSFD-----------GGWG 171

Query: 247 S------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSED 295
           +      VG           ++      AL  GL    VP  +L   KE +       + 
Sbjct: 172 ASYMARIVGQKKAREIWFLCRQYDA-KQALDMGLVNTVVPLADL--EKETVRWCREMLQ- 227

Query: 296 PHQDIVALLAKYS--SDPEGEAPLKLLLPQITS-CFSSE 331
            +  +     K +  +D +G+A L+ L    T   + +E
Sbjct: 228 -NSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTE 265

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 79.9 bits (198), Expect = 4e-17
 Identities = 46/275 (16%), Positives = 83/275 (30%), Gaps = 63/275 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS-GPRAFCAGMDIKG 133
           N VAVI  +  + LNA++          L +      ++C+++    G + F AG DI  
Sbjct: 12  NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDI-- 68

Query: 134 VVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISL 193
                                    E+ +  +     +    +  +   I ++ KP IS+
Sbjct: 69  ------------------------HELPSGGRDPLSYDDPLRQ--ITRMIQKFPKPIISM 102

Query: 194 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------ 247
           ++G   G    +       I    +  +M    +G+                G       
Sbjct: 103 VEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPY--NL---------VGIHNLTRD 151

Query: 248 VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVA 302
            G ++      T   I+    AL  G+    V    L      L +A   SE     +  
Sbjct: 152 AGFHIVKELIFTASPITA-QRALAVGILNHVVEVEEL--EDFTLQMAHHISEKAP--LAI 206

Query: 303 LLAKYSSDPEGEAPLK------LLLPQITSCFSSE 331
            + K      GEA          +     + + SE
Sbjct: 207 AVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSE 241

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 82.7 bits (205), Expect = 6e-17
 Identities = 52/232 (22%), Positives = 82/232 (35%), Gaps = 49/232 (21%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           M +    + V   V  +GVAVITL  P   N+++ D+    KS  +E  S   VK ++I 
Sbjct: 1   MDSRTKGKTVM-EVGGDGVAVITLINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVIT 58

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYS 178
                 F  G DI        + +   +         + K                    
Sbjct: 59  -GAKGRFSGGFDIS----GFGEMQKGNV--------KEPKAGYISID------------I 93

Query: 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 238
           +   +   +KP ++ +DG+ +G G+ ++     RI      L +PE  +G+ P       
Sbjct: 94  ITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIP------- 146

Query: 239 AAKGPGG--------GSVGAYLGM--TGKRISTPSDALFAGLGTDYVPSGNL 280
              G GG        G   A L M  T K +    +    GL    VP   L
Sbjct: 147 ---GFGGTQRLPRLVGLTKA-LEMILTSKPVK-AEEGHSLGLIDAVVPPAEL 193

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 79.2 bits (196), Expect = 8e-17
 Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 50/223 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            G+A +T++RP+  NA       +          D  V  +++ G G  AFC+G D K  
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQK-- 78

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
               ++     +            +I   N L    ++          I    KP I+++
Sbjct: 79  ----KRGHGGYV---------GEDQIPRLNVL----DLQR-------LIRIIPKPVIAMV 114

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 248
            G  +G G  ++      I  +  +       +G F             G GS      V
Sbjct: 115 KGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFD-----------AGYGSGYLARIV 163

Query: 249 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 287
           G           ++ +   +AL  GL    VP   +    E +
Sbjct: 164 GHKKAREIWYLCRQYNA-QEALDMGLVNTVVPLEKV--EDETV 203

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 79.7 bits (196), Expect = 4e-16
 Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 61/232 (26%)

Query: 75  NGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWESD-PRVKCVLIEGSGPR 123
             VA + +D  +           LN+ +L +DI+    +     + P V+ V++     R
Sbjct: 29  GPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDR 88

Query: 124 AFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLIC-K 182
            FC+G +I      +                      ST        +      + +   
Sbjct: 89  VFCSGANIF----MLGL--------------------STHAWKVNFCKFTNETRNGLEDS 124

Query: 183 ISEYKKPYISLMDGVTMGFG--IGISGHGRYRIVTEKTLLAMPE-NGIGLFPDVGFSYIA 239
                  +++ ++G   G G  + ++    Y +    + +++PE   +G+ P        
Sbjct: 125 SRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP-------- 176

Query: 240 AKGPGGG-------SVGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNL 280
             G GG         V            + +     A    L  + V     
Sbjct: 177 --GTGGLTRVTDKRKVRHDRADIFCTVVEGVR-GERAKAWRLVDEVVKPNQF 225

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 49/251 (19%), Positives = 89/251 (35%), Gaps = 62/251 (24%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
           +    + +   G+       +  + +A+I L  P   NA++  +  + ++ L +  SD  
Sbjct: 7   HHHHSSGLVPRGSHMAEYLRLP-HSLAMIRLCNPPV-NAVSPTVIREVRNGLQKAGSDHT 64

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIE 171
           VK ++I       FCAG DI               +  +                     
Sbjct: 65  VKAIVIC-GANGNFCAGADIH----GFSAFTPGLALGSL--------------------- 98

Query: 172 VFTAEYSLICKISEYKKPYISLMDGVTMGFG--IGISGHGRYRIVTEKTLLAMPENGIGL 229
                   + +I  Y+KP ++ + GV +G G  + +  H  YRI   K  + +PE  +G+
Sbjct: 99  --------VDEIQRYQKPVLAAIQGVALGGGLELALGCH--YRIANAKARVGLPEVTLGI 148

Query: 230 FPDVGFSYIAAKGPGG--------GSVGAYLGM--TGKRISTPSDALFAGLGTDYVPSGN 279
            P          G  G        G   A L +  +GK +S   +AL  G+    V S  
Sbjct: 149 LP----------GARGTQLLPRVVGVPVA-LDLITSGKYLS-ADEALRLGILDAVVKSDP 196

Query: 280 LGSLKEALLAV 290
           +    +    +
Sbjct: 197 VEEAIKFAQKI 207

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 78.0 bits (193), Expect = 2e-15
 Identities = 40/218 (18%), Positives = 80/218 (36%), Gaps = 48/218 (22%)

Query: 74  PNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            +G+  +  D   +++N  N     + +  +D  ++D  VK V++  SG   F  G DI 
Sbjct: 14  ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVS-SGKDVFIVGADIT 72

Query: 133 GVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYIS 192
               E  ++   P    +                 E  ++F+          +   P ++
Sbjct: 73  ----EFVENFKLPDAELIAG-------------NLEANKIFS-------DFEDLNVPTVA 108

Query: 193 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG------- 245
            ++G+ +G G+ +     +R++ +   + +PE  +G++P          G GG       
Sbjct: 109 AINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYP----------GFGGTVRLPRL 158

Query: 246 -GSVGAYLGM--TGKRISTPSDALFAGLGTDYVPSGNL 280
            G   A +    +GK      DAL        V +  L
Sbjct: 159 IGVDNA-VEWIASGKENR-AEDALKVSAVDAVVTADKL 194

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           + +A ITL+RP+A NA N ++  +  +       D  V  +++  +G + F AG D++G
Sbjct: 28  DRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG-KHFSAGHDLRG 85

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 73.8 bits (182), Expect = 6e-15
 Identities = 54/281 (19%), Positives = 84/281 (29%), Gaps = 71/281 (25%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP-----RAFCAGM 129
            G+A I ++RP   NA       +          D R+  VL+ G+GP      AFC+G 
Sbjct: 18  GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSG- 76

Query: 130 DIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKP 189
                                    GD         + +          L   I    K 
Sbjct: 77  -------------------------GDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKV 111

Query: 190 YISLMDGVTMGFGIGISGHGR-----YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 244
            I+L+ G  +G G    GH         I  +  +       +G F             G
Sbjct: 112 VIALVAGYAIG-G----GHVLHLVCDLTIAADNAIFGQTGPKVGSFD-----------GG 155

Query: 245 GGS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFS 293
            GS      VG           ++ S   +A   G+    VP   L   +E +  A    
Sbjct: 156 FGSSYLARIVGQKKAREIWYLCRQYSA-QEAERMGMVNTVVPVDRL--EEEGIQWAKEIL 212

Query: 294 EDPHQDIVALLAKYS--SDPEGEAPLKLLLPQIT-SCFSSE 331
                 +     K +  +D +G+A L+ L    T   + +E
Sbjct: 213 SKSP--LAIRCLKAAFNADCDGQAGLQELAGNATLLYYMTE 251

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 37/235 (15%), Positives = 64/235 (27%), Gaps = 56/235 (23%)

Query: 75  NGVAVITLDRPKALN--------AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFC 126
             V  I +    A+N         +  D+     +      +   +   ++  S    F 
Sbjct: 40  RDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFN 99

Query: 127 AGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEY 186
            G D+      I++                      + +L +  +               
Sbjct: 100 LGGDLALFCQLIREGD--------------------RARLLDYAQRCVRGVHAFHVGLGA 139

Query: 187 KKPYISLMDGVTMGFG--IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 244
           +   I+L+ G  +G G    +S H    I  E  ++ +PE    LFP  G          
Sbjct: 140 RAHSIALVQGNALGGGFEAALSCH--TIIAEEGVMMGLPEVLFDLFP--GM--------- 186

Query: 245 GGS------VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 289
           G        + A+L       G   S     L  GL    VP G    +      
Sbjct: 187 GAYSFMCQRISAHLAQKIMLEGNLYSA-EQLLGMGLVDRVVPRGQG--VAAVEQV 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	461
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.84
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.8
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.77
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.57
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.55
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.46
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.46
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.88
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.43
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.4
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.38
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.28
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.15
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.87
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.79
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.63
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.53
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.5
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.25
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.23
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.11
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	97.09
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.03
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.66
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.65
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.3
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.84
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.54
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	95.39
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	95.24
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	95.04
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	93.53
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	93.22
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	92.2
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	91.75
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	90.19
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	87.72
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	81.43

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=8.4e-72  Score=567.16  Aligned_cols=340  Identities=38%  Similarity=0.667  Sum_probs=303.6

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      ..++.|++++ +|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+|+++||+|+|++++......+ 
T Consensus         6 ~~~e~vl~e~-~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~-   83 (353)
T 4hdt_A            6 AKNEDVLVNV-EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKAD-   83 (353)
T ss_dssp             --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTT-
T ss_pred             CCCCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchh-
Confidence            3567899998 79999999999999999999999999999999999999999999999988999999999987643221 


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                             ......++...+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        84 -----------------------~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~  140 (353)
T 4hdt_A           84 -----------------------GAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAM  140 (353)
T ss_dssp             -----------------------SHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEEC
T ss_pred             -----------------------hHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccC
Confidence                                   112345677778899999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|+|++| . ++++|+|||+.|+ |+||+++||||+|||+++|.+.+.+++..        .+..
T Consensus       141 pe~~iGl~p~~g~~~~l~rl~g-~-~a~~l~ltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~la~~--------~~~~  209 (353)
T 4hdt_A          141 PEVGIGFIPDVGGTYLLSRAPG-K-LGLHAALTGAPFS-GADAIVMGFADHYVPHDKIDEFTRAVIAD--------GVDA  209 (353)
T ss_dssp             CGGGGTCCCCTTHHHHHHTSST-T-HHHHHHHHCCCBC-HHHHHHHTSCSEECCGGGHHHHHHHHHHH--------CHHH
T ss_pred             cccccccCCCccceehhhhhhh-H-HHHHHHhcCCCCC-HHHHHHcCCCcEEeCHHHHHHHHHHHHHh--------chhH
Confidence            9999999999999999999999 4 8999999999999 99999999999999999999988888654        3556


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                      .+..+...++ ...+......|++||+.+ ++++|+++|+....       .|+.++++.|+++||.|++++|++++++.
T Consensus       210 ~l~~~~~~~~-~~~l~~~~~~i~~~f~~~-~~~~i~~~L~~~~~-------~~a~~~a~~la~~sP~a~~~~k~~l~~~~  280 (353)
T 4hdt_A          210 ALAAHAQEPP-ASPLAEQRSWIDECYTGD-TVADIIAALRAHDA-------PAAGEAADLIATRSPIALSVTLESVRRAA  280 (353)
T ss_dssp             HHHHHCBCCC-CCHHHHTHHHHHHHTTCS-SHHHHHHHHHHHCS-------HHHHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccCC-ccchHHHHHHHHHHhCCC-CHHHHHHHHHhccc-------HHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            6677765543 456778899999999998 99999999998874       89999999999999999999999999886


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTG  455 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~  455 (461)
                              ...+++++++.|++.+..++.++||+|||+|||++|+|+|+|+|++++||++++|++||+|+++|
T Consensus       281 --------~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p~~l~~V~~~~v~~~f~p~~~e  345 (353)
T 4hdt_A          281 --------KLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRPATLAEVTEADVEAYFAPVDPE  345 (353)
T ss_dssp             --------TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSSCSGGGCCHHHHHGGGCCCSSC
T ss_pred             --------cCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCCCChhhCCHHHHHHHcCCCCCC
Confidence                    24589999999999999999999999999999987779999999999999999999999999865

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=1.6e-67  Score=544.20  Aligned_cols=350  Identities=31%  Similarity=0.530  Sum_probs=306.2

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.|+++||+|+|++++..........
T Consensus        41 ~~~v~~~~-~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~  119 (407)
T 3ju1_A           41 FQTLATAS-GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQ  119 (407)
T ss_dssp             EEEEECTT-SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSS
T ss_pred             cceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccc
Confidence            56677776 79999999999999999999999999999999999999999999999878999999999987643211000


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                          .......++...+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||
T Consensus       120 --------------------~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe  179 (407)
T 3ju1_A          120 --------------------VTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPE  179 (407)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGG
T ss_pred             --------------------cHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChH
Confidence                                001234466667788999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCCh---HHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP---HQDIV  301 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~---~~~~~  301 (461)
                      +++|++|++|++++|+|++| . +|++|+|||+.|+ |+||+++||||+|||++++.++.++|....+..++   ...+.
T Consensus       180 ~~lGl~P~~G~t~~L~rl~g-~-~A~~l~ltG~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~  256 (407)
T 3ju1_A          180 VTIGLYPDVGGSYFLNRMPG-K-MGLFLGLTAYHMN-AADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLD  256 (407)
T ss_dssp             GGGTCCSCTTHHHHTTTSST-T-HHHHHHHHCCCBC-HHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHH
T ss_pred             hhcCCCCCchHHHHHhhhhH-H-HHHHHHHcCCcCc-HHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHH
Confidence            99999999999999999999 6 9999999999999 99999999999999999999888888877665543   23355


Q ss_pred             HHHHhhc---CCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 012534          302 ALLAKYS---SDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYF  378 (461)
Q Consensus       302 ~~l~~~~---~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l  378 (461)
                      +++++|.   ..+.+...+..+.+.|++||+ + |+++|+++|++...  +   .+||++++++|+++||.|++++|+++
T Consensus       257 ~~l~~~~~~~~~~~~~~~l~~~~~~I~~~f~-~-sv~~i~~~L~~~~~--~---~~~a~~~a~~la~~sP~sl~~tk~~l  329 (407)
T 3ju1_A          257 TMINELSNQVDIPKGDSVLAESQEMIDRLMA-G-SLTDIVTRMSTLST--D---EAWLSKACATMLAGSPISWHLAYIQT  329 (407)
T ss_dssp             HHHHHHHTTCSSCCCCCHHHHTHHHHHHHTC-S-CHHHHHHHHHHCCC--S---CHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHhhhhccccCCchhHHHHHHHHHHHhc-C-CHHHHHHHHHhccc--c---cHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5565553   223456678889999999999 5 99999999987432  1   38999999999999999999999999


Q ss_pred             HHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCC
Q 012534          379 SKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT  454 (461)
Q Consensus       379 ~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~  454 (461)
                      +++.         ..++.++++.|++....++.++||+|||+||++||+|+|+|++++++||+++.|+++|+|.|.
T Consensus       330 ~~~~---------~~~l~~~l~~E~~~~~~~~~s~D~~EGvrAflidKdr~P~w~~~~l~~V~~~~v~~~f~~~~~  396 (407)
T 3ju1_A          330 QLGT---------KLSLAQCFKWELTVSVNVCAKGDFCEGVRALLIDKDKQPKWQFADVQSVPNSVIEDILTSPWG  396 (407)
T ss_dssp             HTTT---------CSCHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTSCCCCCCCSSSSTTTSCHHHHHHHHSCCC-
T ss_pred             Hhhh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCcCCCCCCCChHhCCHHHHHHHhCCCCC
Confidence            9876         568999999999999999999999999999998898999999999999999999999999874

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=1.9e-65  Score=522.78  Aligned_cols=341  Identities=39%  Similarity=0.641  Sum_probs=297.8

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      .+.|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.|+++||+|+|++++........ .
T Consensus         5 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~-~   82 (363)
T 3bpt_A            5 AEEVLLGK-KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQ-K   82 (363)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSC-C
T ss_pred             CcceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhccccc-H
Confidence            45677877 789999999999999999999999999999999999999999999998789999999999865321110 0


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                             ....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||
T Consensus        83 -----------------------~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe  139 (363)
T 3bpt_A           83 -----------------------IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPE  139 (363)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCG
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCc
Confidence                                   011244445667788999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.  +|++|+|||+.|+ |+||+++||||+|||++++.+.+++++...+.  +...+..++
T Consensus       140 ~~~Gl~p~~g~~~~L~r~~g~--~a~~l~ltg~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~--~~~~i~~~~  214 (363)
T 3bpt_A          140 TAIGLFPDVGGGYFLPRLQGK--LGYFLALTGFRLK-GRDVYRAGIATHFVDSEKLAMLEEDLLALKSP--SKENIASVL  214 (363)
T ss_dssp             GGTTSCCCTTHHHHHHHSSTT--HHHHHHHHCCCEE-THHHHHTTSCSEECCGGGHHHHHHHHHHCSSC--CHHHHHHHH
T ss_pred             cccCCCCCchHHHHHHHhhHH--HHHHHHHcCCCCC-HHHHHHCCCcceecCHHHHHHHHHHHHhcccC--CHHHHHHHH
Confidence            999999999999999999994  8999999999999 99999999999999999998777777654332  345677777


Q ss_pred             HhhcCC----CCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534          305 AKYSSD----PEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK  380 (461)
Q Consensus       305 ~~~~~~----~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~  380 (461)
                      +.|...    .+....+......|++||+.+ ++.+|+++|++..       .+|+.+++++|+++||.|++.+|+++++
T Consensus       215 ~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~~-~~~ei~~al~~~~-------~~~a~~~a~~la~~sP~al~~~k~~l~~  286 (363)
T 3bpt_A          215 ENYHTESKIDRDKSFILEEHMDKINSCFSAN-TVEEIIENLQQDG-------SSFALEQLKVINKMSPTSLKITLRQLME  286 (363)
T ss_dssp             HHHHHHCCTTTTCCCTTGGGHHHHHHHTTSS-SHHHHHHHHHHHC-------CHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCchhhHHHHHHHHHHhCCC-CHHHHHHHHhccC-------hHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            777531    222456777889999999987 9999999998863       3899999999999999999999999998


Q ss_pred             HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCC
Q 012534          381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPL  452 (461)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~  452 (461)
                      +.         ..++.++++.|.+.+..++.++||+|||+||+++|+|+|+|++++++||+++.|++||+|+
T Consensus       287 ~~---------~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~eK~r~P~~~~~~~~~v~~~~v~~~f~~~  349 (363)
T 3bpt_A          287 GS---------SKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSL  349 (363)
T ss_dssp             HT---------TSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTSCCCCCCCSSCSGGGSCHHHHHHHHSCC
T ss_pred             HH---------hCCHHHHHHHHHHHHHHHhcCccHHhhhhheeeCCCCCCCCCCCChhhCCHHHHHHHhcCC
Confidence            76         5689999999999999999999999999999977778999999999999999999999997

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=6e-60  Score=460.27  Aligned_cols=253  Identities=26%  Similarity=0.375  Sum_probs=229.2

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      |++|+ +|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....        
T Consensus         2 vl~E~-~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--------   71 (254)
T 3hrx_A            2 VLKER-QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLTEFGDRKP--------   71 (254)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGTTTSCC--------
T ss_pred             eEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CCcccCccHHHhcccch--------
Confidence            56776 799999999999999999999999999999999999999999999997 89999999998643110        


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                          ....+....+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus        72 --------------------~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~l  131 (254)
T 3hrx_A           72 --------------------DYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRI  131 (254)
T ss_dssp             --------------------CHHHHTHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGG
T ss_pred             --------------------hhHHHHHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCc
Confidence                                012245556678889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|++|++++|++++|.. +|++|++||+.|+ |+||+++||||++||++++.+.+.                      
T Consensus       132 Gl~p~~g~~~~L~r~vG~~-~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~----------------------  187 (254)
T 3hrx_A          132 GLVPDSGLSFLLPRLVGLA-KAQELLLLSPRLS-AEEALALGLVHRVVPAEKLMEEAL----------------------  187 (254)
T ss_dssp             TCCCCTTHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHH----------------------
T ss_pred             CcCCcccHHHHHHHHhCcc-hHHHHhhcCcccC-HHHHHHCCCeEEecCcHHHHHHHH----------------------
Confidence            9999999999999999998 9999999999999 999999999999999988864322                      


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                    ++|+    +|+++||.+++.+|++++...     
T Consensus       188 ----------------------------------------------~~a~----~la~~~~~a~~~~K~~~~~~~-----  212 (254)
T 3hrx_A          188 ----------------------------------------------SLAK----ELAQGPTRAYALTKKLLLETY-----  212 (254)
T ss_dssp             ----------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHGG-----
T ss_pred             ----------------------------------------------HHHH----HhhccchHHHHHHHHHHHHHH-----
Confidence                                                          3444    799999999999999999987     


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                          ..++.++++.|...+..++.++|++||++||+ +| |+|+|+++
T Consensus       213 ----~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~-eK-R~P~f~Gr  254 (254)
T 3hrx_A          213 ----RLSLTEALALEAVLQGQAGQTQDHEEGVRAFR-EK-RPPRFQGR  254 (254)
T ss_dssp             ----GSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             ----cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-CC-CCCCCCCC
Confidence                57899999999999999999999999999999 78 89999985

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=4.3e-59  Score=458.85  Aligned_cols=261  Identities=25%  Similarity=0.412  Sum_probs=226.8

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      +++|+++. +|||++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......... 
T Consensus        14 ~e~il~~~-~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~~~~-   90 (274)
T 4fzw_C           14 MEFILSHV-EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGFCAGQDLNDRNVDPTGPAP-   90 (274)
T ss_dssp             --CEEEEE-ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCCC---------CC-
T ss_pred             cccEEEEE-ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcChHhhhccccccch-
Confidence            46788887 799999999999999999999999999999999999999999999998 899999999987643211110 


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                            +....+....+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        91 ----------------------~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe  148 (274)
T 4fzw_C           91 ----------------------DLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAF  148 (274)
T ss_dssp             ----------------------CHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCG
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcc
Confidence                                  0122234445568889999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|+|||+.|+ |+||+++||||+|||++++.+.+.                   
T Consensus       149 ~~~Gl~p~~g~~~~L~r~vG~~-~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~-------------------  207 (274)
T 4fzw_C          149 SKLGLIPDCGGTWLLPRVAGRA-RAMGLALLGNQLS-AEQAHEWGMIWQVVDDETLADTAQ-------------------  207 (274)
T ss_dssp             GGTTCCCTTTHHHHHHHHTCHH-HHHHHHHHCCCEE-HHHHHHTTSSSEEECGGGHHHHHH-------------------
T ss_pred             cCcccCCCccHHHHHHHHhhHH-HHHHHHHhCCcCC-HHHHHHCCCceEEeChHHHHHHHH-------------------
Confidence            9999999999999999999998 9999999999999 999999999999999988764322                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++|+    +|+.+||.+++.+|++++...  
T Consensus       208 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  232 (274)
T 4fzw_C          208 -------------------------------------------------QLAR----HLATQPTFGLGLIKQAINSAE--  232 (274)
T ss_dssp             -------------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHHHT--
T ss_pred             -------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh--
Confidence                                                             4444    799999999999999999887  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                             ..+++++++.|.+.+..++.++|++||++||+ +| |+|+|+++
T Consensus       233 -------~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~-eK-R~P~f~Gr  274 (274)
T 4fzw_C          233 -------TNTLDTQLDLERDYQRLAGRSADYREGVSAFL-AK-RSPQFTGK  274 (274)
T ss_dssp             -------SSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHH-C--CCCCCCCC
T ss_pred             -------hCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-CC-CCCCCCCC
Confidence                   67899999999999999999999999999999 78 89999975

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=2.6e-59  Score=456.62  Aligned_cols=254  Identities=22%  Similarity=0.323  Sum_probs=228.9

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.|.+++ +|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......     
T Consensus         5 s~l~ve~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~-----   77 (258)
T 4fzw_A            5 SELIVSR-QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMAEKDLA-----   77 (258)
T ss_dssp             CEEEEEE-ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEEECBCHHHHHTCCHH-----
T ss_pred             CcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCC-CceeCCCchhhhccchhh-----
Confidence            4488887 799999999999999999999999999999999999999999999998 899999999987632110     


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                              ..+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        78 ------------------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~  133 (258)
T 4fzw_A           78 ------------------------ATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEI  133 (258)
T ss_dssp             ------------------------HHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGG
T ss_pred             ------------------------hHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECccc
Confidence                                    01222234577789999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                    
T Consensus       134 ~~Gl~p~~g~~~~l~r~vG~~-~A~~llltg~~i~-a~eA~~~GLv~~vv~~~~l~~~a~--------------------  191 (258)
T 4fzw_A          134 TLGIMPGAGGTQRLIRSVGKS-LASKMVLSGESIT-AQQAQQAGLVSDVFPSDLTLEYAL--------------------  191 (258)
T ss_dssp             GGTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECTTTHHHHHH--------------------
T ss_pred             CCCcCCCchHHHHHHHHhCHH-HHHHHHHcCCcCc-HHHHHHCCCeeEEeCchHHHHHHH--------------------
Confidence            999999999999999999998 9999999999999 999999999999999998874322                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      ++|+    +|+++||.+++.+|++++...   
T Consensus       192 ------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~---  216 (258)
T 4fzw_A          192 ------------------------------------------------QLAS----KMARHSPLALQAAKQALRQSQ---  216 (258)
T ss_dssp             ------------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHHHT---
T ss_pred             ------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---
Confidence                                                            3444    799999999999999999887   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                            ..+++++++.|.+.+..++.++|++||++||+ +| |+|+|+++
T Consensus       217 ------~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~-eK-R~P~f~Gr  258 (258)
T 4fzw_A          217 ------EVALQAGLAQERQLFTLLAATEDRHEGISAFL-QK-RTPDFKGR  258 (258)
T ss_dssp             ------TSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             ------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-CC-CCCCCCCC
Confidence                  57899999999999999999999999999999 78 89999985

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=3.7e-57  Score=443.12  Aligned_cols=261  Identities=21%  Similarity=0.302  Sum_probs=233.6

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      +.++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++....    
T Consensus         5 m~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~----   80 (265)
T 3kqf_A            5 LQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMN----   80 (265)
T ss_dssp             --CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCC----
T ss_pred             ccCCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccC----
Confidence            3567899982379999999999999999999999999999999999999999999999878999999999875311    


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                             ......+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        81 -----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  137 (265)
T 3kqf_A           81 -----------------------EEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGL  137 (265)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEEC
Confidence                                   011233556667788899999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                 
T Consensus       138 pe~~~Gl~p~~g~~~~L~r~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-----------------  198 (265)
T 3kqf_A          138 TETTLAIIPGAGGTQRLPRLIGVG-RAKELIYTGRRIS-AQEAKEYGLVEFVVPVHLLEEKAI-----------------  198 (265)
T ss_dssp             CGGGGTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHH-----------------
T ss_pred             cccccCcCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCccEEeCHHHHHHHHH-----------------
Confidence            999999999999999999999998 9999999999999 999999999999999888764322                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         +||+    +|+++||.+++.+|++++...
T Consensus       199 ---------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~  223 (265)
T 3kqf_A          199 ---------------------------------------------------EIAE----KIASNGPIAVRLAKEAISNGI  223 (265)
T ss_dssp             ---------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHT
T ss_pred             ---------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh
Confidence                                                               4444    799999999999999999876


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                               ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       224 ---------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~g~  265 (265)
T 3kqf_A          224 ---------QVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFK-EK-RTPMYKGE  265 (265)
T ss_dssp             ---------TSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             ---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCCC
Confidence                     56899999999999999999999999999999 77 89999864

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=5.8e-56  Score=437.81  Aligned_cols=263  Identities=21%  Similarity=0.354  Sum_probs=235.5

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      ..++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus        14 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   91 (279)
T 3g64_A           14 PEWRHLRVEI-TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG-RGFCSGGDVDEIIGATLSMD   91 (279)
T ss_dssp             SCCSSEEEEE-ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECS-SCSBCCBCTTTTHHHHTTCC
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceecCcCHHHHhhccccch
Confidence            3467899987 799999999999999999999999999999999999999999999998 89999999999876432110


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                             ......+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++
T Consensus        92 -----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~  148 (279)
T 3g64_A           92 -----------------------TARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAF  148 (279)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEEC
T ss_pred             -----------------------hhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeC
Confidence                                   011223455556788899999999999999999999999999999999999999999


Q ss_pred             cccccCCC-CCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          223 PENGIGLF-PDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       223 pe~~lGl~-P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      ||+++|++ |++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                
T Consensus       149 pe~~~Gl~~p~~g~~~~l~r~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~----------------  210 (279)
T 3g64_A          149 LFTRVGLSGGDMGAAYLLPRVVGLG-HATRLLMLGDTVR-APEAERIGLISELTEEGRADEAAR----------------  210 (279)
T ss_dssp             CGGGGTCCSCCTTHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTCCSEECCTTCHHHHHH----------------
T ss_pred             chhhcCCCCCchhHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHCCCCCEecCchHHHHHHH----------------
Confidence            99999999 9999999999999998 9999999999999 999999999999999998874322                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          +||+    +|++.||.+++.+|++++..
T Consensus       211 ----------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~  234 (279)
T 3g64_A          211 ----------------------------------------------------TLAR----RLADGPALAHAQTKALLTAE  234 (279)
T ss_dssp             ----------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhh
Confidence                                                                4444    79999999999999999987


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      .         ..+++++++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       235 ~---------~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~g~  277 (279)
T 3g64_A          235 L---------DMPLAAAVELDASTQALLMTGEDYAEFHAAFT-EK-RPPKWQGR  277 (279)
T ss_dssp             T---------TSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             h---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCCC
Confidence            6         56899999999999999999999999999999 78 89999975

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=4.1e-56  Score=436.26  Aligned_cols=262  Identities=21%  Similarity=0.312  Sum_probs=228.2

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      +++.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......  
T Consensus         2 ~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--   77 (268)
T 3i47_A            2 SLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG-KHFSAGADLTWMQSMANFT--   77 (268)
T ss_dssp             CCCSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECS-SCSBCSBCHHHHHHHHTCC--
T ss_pred             CCCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCeeCCCChhhhhcccccc--
Confidence            467788987 799999999999999999999999999999999999999999999998 8999999999987532111  


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                            ......+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        78 ----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~p  135 (268)
T 3i47_A           78 ----------------------EEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFS  135 (268)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECC
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECc
Confidence                                  0111224445567888999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++ +|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                  
T Consensus       136 e~~~Gl~p~~g~~-~l~~~vG~~-~A~~llltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~------------------  194 (268)
T 3i47_A          136 EVKLGLIPAVISP-YVVRAIGER-AAKMLFMSAEVFD-ATRAYSLNLVQHCVPDDTLLEFTL------------------  194 (268)
T ss_dssp             GGGGTCCCTTTHH-HHHHHHCHH-HHHHHHHHCCEEE-HHHHHHTTSCSEEECGGGHHHHHH------------------
T ss_pred             ccccCCCcccHHH-HHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCcEeeChhHHHHHHH------------------
Confidence            9999999999988 789999998 9999999999999 999999999999999988764322                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|+++||.+++.+|++++... 
T Consensus       195 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-  219 (268)
T 3i47_A          195 --------------------------------------------------KYAS----QISNNAPEAVKNSKQLAQYVA-  219 (268)
T ss_dssp             --------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHT-
T ss_pred             --------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhh-
Confidence                                                              3444    799999999999999999876 


Q ss_pred             hcCCCccccCCHHH-HHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCc
Q 012534          384 AHGKTDNELSKLSG-VMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASL  437 (461)
Q Consensus       384 ~~~~~~~~~~~l~~-~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~  437 (461)
                              ..++.+ .++.|.+.+..++.++|++||+++|+ +| |+|+|++...
T Consensus       220 --------~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~-ek-R~p~f~~~~~  264 (268)
T 3i47_A          220 --------NKKIDEELVRYTASLIAHKRVSDEGQEGLKAFL-NK-EIPNWNEGHH  264 (268)
T ss_dssp             --------TCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHH-HT-CCCTTC----
T ss_pred             --------cCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCCCCC
Confidence                    456777 78999999999999999999999999 67 8999997543

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=7.2e-56  Score=431.68  Aligned_cols=252  Identities=24%  Similarity=0.362  Sum_probs=227.7

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      +++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...      
T Consensus         4 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~------   75 (255)
T 3p5m_A            4 SMNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLTGGDTA------   75 (255)
T ss_dssp             CBTTEEEEE-ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCEECC---CHH------
T ss_pred             CCceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCCChhhhcch------
Confidence            345688887 799999999999999999999999999999999999999999999998 899999999986520      


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                                 .+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        76 ---------------------------~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~p  128 (255)
T 3p5m_A           76 ---------------------------GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLA  128 (255)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECG
T ss_pred             ---------------------------HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCc
Confidence                                       14444567888999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                  
T Consensus       129 e~~~Gl~p~~g~~~~l~r~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~------------------  188 (255)
T 3p5m_A          129 FTRVGLMPDGGASALLPLLIGRA-RTSRMAMTAEKIS-AATAFEWGMISHITSADEYESVLT------------------  188 (255)
T ss_dssp             GGGGTCCCCTTHHHHTHHHHCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEECCTTCHHHHHH------------------
T ss_pred             ccccCcCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHCCCCCEeeCHHHHHHHHH------------------
Confidence            99999999999999999999998 9999999999999 999999999999999998875332                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|+++||.+++.+|++++... 
T Consensus       189 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-  213 (255)
T 3p5m_A          189 --------------------------------------------------DVLR----SVSGGPTLAFGWTKRALAAAT-  213 (255)
T ss_dssp             --------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHH-
T ss_pred             --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh-
Confidence                                                              4444    799999999999999999877 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                              ..+++++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       214 --------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~g~  255 (255)
T 3p5m_A          214 --------LAELEPVQAIEAEGQLALVETADFREGARAFR-ER-RTPNFRGH  255 (255)
T ss_dssp             --------CTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             --------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCCC
Confidence                    56899999999999999999999999999999 77 89999863

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=1.8e-56  Score=440.77  Aligned_cols=257  Identities=24%  Similarity=0.326  Sum_probs=227.7

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      |+++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......  
T Consensus        22 m~~~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--   97 (278)
T 3h81_A           22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFA--   97 (278)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCBCSHHHHTCCHH--
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCeecCcCHHHHhccChh--
Confidence            4567899987 789999999999999999999999999999999999999999999976 899999999998642100  


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                                 ..+....+..+.+|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        98 ---------------------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~  150 (278)
T 3h81_A           98 ---------------------------DAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQ  150 (278)
T ss_dssp             ---------------------------HHHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred             ---------------------------hHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEEC
Confidence                                       00112222236678999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                 
T Consensus       151 pe~~lGl~p~~g~~~~L~r~vG~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~-----------------  211 (278)
T 3h81_A          151 PEIKLGVLPGMGGSQRLTRAIGKA-KAMDLILTGRTMD-AAEAERSGLVSRVVPADDLLTEAR-----------------  211 (278)
T ss_dssp             GGGGGTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHH-----------------
T ss_pred             chhhcCcCCCccHHHHHHHHhCHH-HHHHHHHhCCCcC-HHHHHHCCCccEEeChhHHHHHHH-----------------
Confidence            999999999999999999999997 9999999999999 999999999999999888764222                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         +||+    +|+++||.+++.+|++++...
T Consensus       212 ---------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~  236 (278)
T 3h81_A          212 ---------------------------------------------------ATAT----TISQMSASAARMAKEAVNRAF  236 (278)
T ss_dssp             ---------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHTT
T ss_pred             ---------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh
Confidence                                                               3444    799999999999999999876


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                               ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       237 ---------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~-ek-R~P~f~g~  278 (278)
T 3h81_A          237 ---------ESSLSEGLLYERRLFHSAFATEDQSEGMAAFI-EK-RAPQFTHR  278 (278)
T ss_dssp             ---------TSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             ---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCCC
Confidence                     56899999999999999999999999999999 78 89999874

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=4.2e-56  Score=434.72  Aligned_cols=257  Identities=23%  Similarity=0.293  Sum_probs=228.0

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....     
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~-----   76 (261)
T 3pea_A            5 LKFLSVRV-EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIKEFTSVTE-----   76 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSSTTCC-----
T ss_pred             ccceEEEE-ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcCHHHHhhcCc-----
Confidence            46688887 79999999999999 999999999999999999999999999999998 89999999998753110     


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                           ......+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        77 ---------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe  135 (261)
T 3pea_A           77 ---------------------AKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPE  135 (261)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCG
T ss_pred             ---------------------hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcc
Confidence                                 00111233334567888999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                   
T Consensus       136 ~~~Gl~p~~g~~~~L~r~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-------------------  194 (261)
T 3pea_A          136 LTLGLIPGFAGTQRLPRYVGKA-KACEMMLTSTPIT-GAEALKWGLVNGVFAEETFLDDTL-------------------  194 (261)
T ss_dssp             GGGTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHH-------------------
T ss_pred             cccCcCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCccEecCHHHHHHHHH-------------------
Confidence            9999999999999999999998 9999999999999 999999999999999988764322                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       +||+    +|+++||.+++.+|++++...  
T Consensus       195 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  219 (261)
T 3pea_A          195 -------------------------------------------------KVAK----QIAGKSPATARAVLELLQTTK--  219 (261)
T ss_dssp             -------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHGGGC--
T ss_pred             -------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh--
Confidence                                                             4444    799999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                             ..++.++++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       220 -------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-r~P~f~g~  261 (261)
T 3pea_A          220 -------SSHYYEGVQREAQIFGEVFTSEDGREGVAAFL-EK-RKPSFSGR  261 (261)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH-TT-SCCCCCC-
T ss_pred             -------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCCC
Confidence                   45799999999999999999999999999999 77 89999863

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.1e-56  Score=437.28  Aligned_cols=257  Identities=23%  Similarity=0.317  Sum_probs=228.0

Q ss_pred             CCccceEEEEecCc-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           63 GAEEFVKGNVHPNG-VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        63 ~~~~~i~~~~~~~~-V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      |+++.|.++. +++ |++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...... 
T Consensus         6 m~~~~i~~~~-~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-   82 (263)
T 3moy_A            6 TTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSE-RAFAAGADIAEMVTLTPH-   82 (263)
T ss_dssp             CCCSSEEEEC-CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEEESBCHHHHTTCCHH-
T ss_pred             CCCCeEEEEE-eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeeCCcChHHHhccCch-
Confidence            3467788887 555 999999999999999999999999999999999999999999976 899999999987531100 


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                                                .  .+......++.+|.++||||||+|||+|+|||++|+++|||||++++++|+
T Consensus        83 --------------------------~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~  134 (263)
T 3moy_A           83 --------------------------Q--ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFG  134 (263)
T ss_dssp             --------------------------H--HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEE
T ss_pred             --------------------------h--HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEe
Confidence                                      0  012223456778999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                
T Consensus       135 ~pe~~~Gl~p~~g~~~~l~~~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~----------------  196 (263)
T 3moy_A          135 QPEITLGILPGLGGTQRLTRAVGKA-KAMDLCLTGRSLT-AEEAERVGLVSRIVPAADLLDEAL----------------  196 (263)
T ss_dssp             CGGGGGTCCCSSSTTTHHHHHHCHH-HHHHHHHHCCEEE-HHHHHHTTSCSEEECGGGHHHHHH----------------
T ss_pred             CcccccCCCCchhHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCccEecCchHHHHHHH----------------
Confidence            9999999999999999999999998 9999999999999 999999999999999888764222                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          ++|+    +|+.+||.+++.+|++++..
T Consensus       197 ----------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~  220 (263)
T 3moy_A          197 ----------------------------------------------------AVAQ----RIARMSRPAGRAVKDAINEA  220 (263)
T ss_dssp             ----------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHHT
T ss_pred             ----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHh
Confidence                                                                4444    79999999999999999987


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      .         ..+++++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       221 ~---------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~-ek-R~p~f~g~  263 (263)
T 3moy_A          221 F---------ERPLSAGMRYERDAFYAMFDTHDQTEGMTAFL-EK-RTPEFTDR  263 (263)
T ss_dssp             T---------TSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             h---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-hC-CCCCCCCC
Confidence            6         56899999999999999999999999999999 78 89999874

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=2.3e-55  Score=435.69  Aligned_cols=264  Identities=21%  Similarity=0.296  Sum_probs=226.3

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      ..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........   
T Consensus        24 ~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~---   98 (290)
T 3sll_A           24 FVLVDRP-RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGPIPHIGG---   98 (290)
T ss_dssp             CEEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCC------CCCSSCTT---
T ss_pred             eEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCC-CCeeCCcChHHHhccccccc---
Confidence            4577776 799999999999999999999999999999999999999999999998 89999999998753210000   


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                 .      ........+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        99 -----------~------~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~  161 (290)
T 3sll_A           99 -----------L------TQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGI  161 (290)
T ss_dssp             -----------C------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTT
T ss_pred             -----------c------cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchh
Confidence                       0      00112234556667788999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC-chHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          226 GIGLFPD-VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       226 ~lGl~P~-~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      ++|++|+ +|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                   
T Consensus       162 ~~Gl~p~~~g~~~~L~r~vG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~-------------------  220 (290)
T 3sll_A          162 NNGLTASELGLSYLLPRAIGTS-RASDIMLTGRDVD-ADEAERIGLVSRKVASESLLEECY-------------------  220 (290)
T ss_dssp             TTTSCSCCTTHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHH-------------------
T ss_pred             ccCcCCCcccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCccEEeChhHHHHHHH-------------------
Confidence            9999999 99999999999997 9999999999999 999999999999999988764222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++|+    +|+++||.+++.+|++++...  
T Consensus       221 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  245 (290)
T 3sll_A          221 -------------------------------------------------AIGE----RIAGFSRPGIELTKRTIWSGL--  245 (290)
T ss_dssp             -------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHHHH--
T ss_pred             -------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhc--
Confidence                                                             3444    799999999999999999887  


Q ss_pred             cCCCcccc-CCHHHHHHHHHHHHHhhc-CCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          385 HGKTDNEL-SKLSGVMKYEYRVALRSS-LRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       385 ~~~~~~~~-~~l~~~l~~E~~~~~~~~-~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                             . .+++++++.|...+..++ .++|++||+++|+ +| |+|+|++++
T Consensus       246 -------~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFl-ek-R~P~f~g~~  290 (290)
T 3sll_A          246 -------DAASLESHMHQEGLGQLYVRLLTDNFEEATAARK-EK-RPAEFRDKR  290 (290)
T ss_dssp             -------TCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-TT-SCCCCCSCC
T ss_pred             -------ccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCCCC
Confidence                   4 689999999999999999 9999999999999 77 899999864

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=8.6e-55  Score=428.63  Aligned_cols=269  Identities=18%  Similarity=0.263  Sum_probs=229.9

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      |+.|.++.++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~   80 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhcccccccc
Confidence            456888875678999999999999999999999999999999999999999999998 8999999999986532110000


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                 +     ..........+....+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        81 -----------~-----~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe  144 (275)
T 1dci_A           81 -----------D-----VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKE  144 (275)
T ss_dssp             -----------S-----HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCG
T ss_pred             -----------h-----hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcc
Confidence                       0     000011122234445667888999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCc-hHHHHHHhhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHhcccCCChHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGG-GSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~-~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      +++|++|++|++++|++++|. . ++++|++||+.|+ |+||+++||||+|||+ +++.+.+                  
T Consensus       145 ~~~Gl~p~~g~~~~l~r~vG~~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~a------------------  204 (275)
T 1dci_A          145 VDVGLAADVGTLQRLPKVIGNRS-LVNELTFTARKMM-ADEALDSGLVSRVFPDKDVMLNAA------------------  204 (275)
T ss_dssp             GGGTSCCCSSHHHHGGGTCSCHH-HHHHHHHHCCEEE-HHHHHHHTSSSEEESSHHHHHHHH------------------
T ss_pred             cccCCCCCccHHHHHHHHhCcHH-HHHHHHHcCCCCC-HHHHHHcCCcceecCChHHHHHHH------------------
Confidence            999999999999999999999 8 9999999999999 9999999999999997 6655322                  


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                        .++|+    +|+++||.+++.+|++++...
T Consensus       205 --------------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~~  230 (275)
T 1dci_A          205 --------------------------------------------------FALAA----DISSKSPVAVQGSKINLIYSR  230 (275)
T ss_dssp             --------------------------------------------------HHHHH----HHHHSCHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhc
Confidence                                                              14444    799999999999999999876


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCC--CCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKD--QNPKWNP  434 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~--r~P~w~~  434 (461)
                               ..++.++++.|...+..++.++|++||+++|+ +|+  |+|+|++
T Consensus       231 ---------~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek~~~r~p~f~~  274 (275)
T 1dci_A          231 ---------DHSVDESLDYMATWNMSMLQTQDIIKSVQAAM-EKKDSKSITFSK  274 (275)
T ss_dssp             ---------HSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHH-TTCCGGGCCCCC
T ss_pred             ---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hcCCCCCCCCCC
Confidence                     46899999999999999999999999999999 665  7999985

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=2.9e-56  Score=438.64  Aligned_cols=258  Identities=20%  Similarity=0.258  Sum_probs=227.4

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      |+++.|.++. +++|++||||||+++|+||.+|+.+|.++++.+  |+++|+|||||.| ++||+|+|++++....    
T Consensus        13 m~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~----   84 (275)
T 3hin_A           13 ADPSTLVVDT-VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIG-DHFSAGLDLSELRERD----   84 (275)
T ss_dssp             CCGGGEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESS-SCSBCCBCGGGCCCCC----
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCC-CCccCCCCHHHHhccC----
Confidence            5577899987 799999999999999999999999999999999  5789999999998 8999999999874210    


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                             ......+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        85 -----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  141 (275)
T 3hin_A           85 -----------------------ATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYAL  141 (275)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred             -----------------------hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEEC
Confidence                                   001122445556788899999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                 
T Consensus       142 pe~~~Gl~p~~g~~~~L~r~vG~~-~A~~l~ltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~-----------------  202 (275)
T 3hin_A          142 PEGSRGIFVGGGGSVRLPRLIGVA-RMADMMLTGRVYS-AAEGVVHGFSQYLIENGSAYDKAL-----------------  202 (275)
T ss_dssp             GGGGGTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEESSSCHHHHHH-----------------
T ss_pred             chhccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCCCEEeChhHHHHHHH-----------------
Confidence            999999999999999999999998 9999999999999 999999999999999999874322                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         ++|+    +|+++||.+++.+|++++...
T Consensus       203 ---------------------------------------------------~~a~----~ia~~~p~a~~~~K~~l~~~~  227 (275)
T 3hin_A          203 ---------------------------------------------------ELGN----RVAQNAPLTNFAVLQALPMIA  227 (275)
T ss_dssp             ---------------------------------------------------HHHH----HHTTSCHHHHHHHHTHHHHHH
T ss_pred             ---------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh
Confidence                                                               3444    799999999999999999876


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                               ..+++++++.|...+..++.++|++||+++|+ +| |+|+|++..
T Consensus       228 ---------~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~-ek-R~p~f~~~~  270 (275)
T 3hin_A          228 ---------EANPQTGLLMESLMATVAQSDQEAKTRIRAFL-DH-KTAKVREGH  270 (275)
T ss_dssp             ---------HSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHH-HH-HHHHC----
T ss_pred             ---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCCCC
Confidence                     56899999999999999999999999999999 67 899998753

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=1.4e-55  Score=432.11  Aligned_cols=256  Identities=23%  Similarity=0.343  Sum_probs=216.9

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         4 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   81 (266)
T 3fdu_A            4 HPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE-HDFTAGNDMKDFMGFVQNPNAG   81 (266)
T ss_dssp             CTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHHHHHHSCCCS
T ss_pred             CCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeECCcCHHHHhhhccccchh
Confidence            46688887 799999999999999999999999999999999999999999999998 8999999999987432211110


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                      .                         ......+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        82 ~-------------------------~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe  136 (266)
T 3fdu_A           82 P-------------------------AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPF  136 (266)
T ss_dssp             C-------------------------GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCT
T ss_pred             h-------------------------HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECch
Confidence            0                         012233466778999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||  ++.+                      
T Consensus       137 ~~~Gl~p~~g~~~~l~r~vG~~-~A~~l~ltg~~i~-A~eA~~~GLv~~vv~--~l~~----------------------  190 (266)
T 3fdu_A          137 VSLGLSPEGGASQLLVKQAGYH-KAAELLFTAKKFN-AETALQAGLVNEIVE--DAYA----------------------  190 (266)
T ss_dssp             TTTTCCCCTTHHHHHHHHHCHH-HHHHHHHHCCEEC-HHHHHHTTSCSEECS--CHHH----------------------
T ss_pred             hhhCCCCcchHHHHHHHHhCHH-HHHHHHHhCCCcC-HHHHHHCCCHHHHHH--HHHH----------------------
Confidence            9999999999999999999998 9999999999999 999999999999998  6653                      


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                        .|.+++++|+++||.+++.+|++++...  
T Consensus       191 --------------------------------------------------~a~~~a~~la~~~~~a~~~~K~~l~~~~--  218 (266)
T 3fdu_A          191 --------------------------------------------------TAQATAQHLTALPLASLKQTKALMKHDL--  218 (266)
T ss_dssp             --------------------------------------------------HHHHHHHHHHTSCHHHHHHHHHHHTTTH--
T ss_pred             --------------------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHhhh--
Confidence                                                              2233334899999999999999998754  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                              .+++++++.|...+..++.++|++||+++|+ +| |+|+|++.
T Consensus       219 --------~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~-ek-R~p~~~~~  259 (266)
T 3fdu_A          219 --------DQIIECIDHEAEIFMQRVQSPEMLEAVQAFM-QK-RQPDFSQE  259 (266)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC------------
T ss_pred             --------ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCCC
Confidence                    3689999999999999999999999999999 77 89999875

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=6e-56  Score=434.61  Aligned_cols=257  Identities=21%  Similarity=0.228  Sum_probs=226.2

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| +.||+|+|++++......... 
T Consensus         8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~-   84 (265)
T 3swx_A            8 YETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEG-PLFTAGLDLASVAAEIQGGAS-   84 (265)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHC--CC-
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcChHHHhhcccchhH-
Confidence            67788887 799999999999999999999999999999999999999999999998 679999999998764322110 


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHH-hhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKI-SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                      ...                          ......+..+ .++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        85 ~~~--------------------------~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~p  138 (265)
T 3swx_A           85 LTP--------------------------EGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQL  138 (265)
T ss_dssp             CCC--------------------------TTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECG
T ss_pred             HHH--------------------------HHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECc
Confidence            000                          0001223456 8999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+|||++++.+.+.                  
T Consensus       139 e~~~Gl~p~~g~~~~l~r~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~------------------  198 (265)
T 3swx_A          139 EVNRGIYPFGGATIRFPRTAGWG-NAMRWMLTADTFD-AVEAHRIGIVQEIVPVGEHVDTAI------------------  198 (265)
T ss_dssp             GGGGTSCCCSSHHHHHHHHHCHH-HHHHHHTTCCCEE-HHHHHHTTSCSEEESTTCHHHHHH------------------
T ss_pred             ccccccCCCccHHHHHHHHhhHH-HHHHHHHcCCcCC-HHHHHHcCCCCEecChhHHHHHHH------------------
Confidence            99999999999999999999998 9999999999999 999999999999999998865322                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|+++||.+++.+|++++... 
T Consensus       199 --------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~-  223 (265)
T 3swx_A          199 --------------------------------------------------AIAQ----TIARQAPLGVQATLRNARLAV-  223 (265)
T ss_dssp             --------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHHHH-
T ss_pred             --------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh-
Confidence                                                              3444    799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                              ..+++++++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       224 --------~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~g~  265 (265)
T 3swx_A          224 --------REGDAAAEEQLVPTVRELFTSEDATLGVQAFL-SR-TTAEFVGR  265 (265)
T ss_dssp             --------HHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-CCCCCCCC
T ss_pred             --------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-cC-CCCCCCCC
Confidence                    45899999999999999999999999999999 67 89999874

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=2.1e-55  Score=433.67  Aligned_cols=258  Identities=22%  Similarity=0.312  Sum_probs=215.2

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      ..+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........ 
T Consensus        18 ~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~-   94 (278)
T 4f47_A           18 SGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAG-GYFCAGMDLKAATKKPPGDS-   94 (278)
T ss_dssp             -CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCC-----------------
T ss_pred             CCCceEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CcccCCcChHhhhccchhhh-
Confidence            346688887 799999999999999999999999999999999999999999999998 89999999999865321100 


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHh---hCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKIS---EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL  220 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f  220 (461)
                                               . ........++..+.   ++||||||+|||+|+|||++|+++|||||++++++|
T Consensus        95 -------------------------~-~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f  148 (278)
T 4f47_A           95 -------------------------F-KDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKF  148 (278)
T ss_dssp             --------------------------------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEE
T ss_pred             -------------------------H-HHHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEE
Confidence                                     0 00001112334455   999999999999999999999999999999999999


Q ss_pred             eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534          221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI  300 (461)
Q Consensus       221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~  300 (461)
                      ++||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.               
T Consensus       149 ~~pe~~~Gl~p~~g~~~~L~r~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~---------------  211 (278)
T 4f47_A          149 GISEAKWSLYPMGGSAVRLVRQIPYT-VACDLLLTGRHIT-AAEAKEMGLVGHVVPDGQALTKAL---------------  211 (278)
T ss_dssp             ECCGGGGTCCCTTSHHHHHHHHSCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECTTCHHHHHH---------------
T ss_pred             ECcccccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHCCCceEeeChhHHHHHHH---------------
Confidence            99999999999999999999999998 9999999999999 999999999999999998874322               


Q ss_pred             HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534          301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK  380 (461)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~  380 (461)
                                                                           ++|+    +|+++||.+++.+|++++.
T Consensus       212 -----------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~  234 (278)
T 4f47_A          212 -----------------------------------------------------EIAE----IIAANGPLAVQAILRTIRE  234 (278)
T ss_dssp             -----------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHH
Confidence                                                                 3444    7999999999999999998


Q ss_pred             HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      ..         ..+++++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       235 ~~---------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~-ek-r~p~f~g~  278 (278)
T 4f47_A          235 TE---------GMHENEAFKIDTRIGIEVFLSDDAKEGPQAFA-QK-RKPNFQNR  278 (278)
T ss_dssp             TT---------TSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             hc---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCCC
Confidence            76         56899999999999999999999999999999 77 89999864

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=7e-56  Score=434.48  Aligned_cols=257  Identities=24%  Similarity=0.309  Sum_probs=222.6

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.......   
T Consensus         8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~---   83 (267)
T 3r9t_A            8 APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLY---   83 (267)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCS---
T ss_pred             CCcEEEEE-ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchh---
Confidence            46688887 79999999999999999999999999999999999999999999999867999999999986421110   


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                      . ..                . .   .+.   ...+ .+.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        84 ~-~~----------------~-~---~~~---~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe  138 (267)
T 3r9t_A           84 H-PD----------------H-P---EWG---FAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPE  138 (267)
T ss_dssp             C-TT----------------C-G---GGC---GGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGG
T ss_pred             h-HH----------------H-H---hHH---HHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcc
Confidence            0 00                0 0   000   0111 1238999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                   
T Consensus       139 ~~~Gl~p~~g~~~~L~r~vG~~-~A~~l~ltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~-------------------  197 (267)
T 3r9t_A          139 VKRGLIAAAGGVFRIAEQLPRK-VAMRLLLTGEPLS-AAAARDWGLINEVVEAGSVLDAAL-------------------  197 (267)
T ss_dssp             GGTTCCCTTTHHHHHHHHSCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECTTCHHHHHH-------------------
T ss_pred             cccCCCCCccHHHHHHHHcCHH-HHHHHHHcCCCCC-HHHHHHCCCccEEcChhHHHHHHH-------------------
Confidence            9999999999999999999998 9999999999999 999999999999999999874322                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHH---HHHH
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKY---FSKV  381 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~---l~~~  381 (461)
                                                                       ++|+    +|+++||.+++.+|++   ++..
T Consensus       198 -------------------------------------------------~~a~----~la~~~p~a~~~~K~~~~~l~~~  224 (267)
T 3r9t_A          198 -------------------------------------------------ALAS----AITVNAPLSVQASKRIAYGVDDG  224 (267)
T ss_dssp             -------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHTTEETT
T ss_pred             -------------------------------------------------HHHH----HHHhCChHHHHHHHHHHHHHHHh
Confidence                                                             3444    7999999999999999   8766


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      .         ..+++++++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       225 ~---------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~-ek-R~P~f~g~  267 (267)
T 3r9t_A          225 V---------VVGDEPGWDRTMREMRALLKSEDAKEGPRAFA-EK-REPVWQAR  267 (267)
T ss_dssp             E---------EGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             h---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCCC
Confidence            5         45799999999999999999999999999999 77 89999864

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.9e-56  Score=444.83  Aligned_cols=270  Identities=21%  Similarity=0.299  Sum_probs=182.4

Q ss_pred             CCccceEEEEecC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           63 GAEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        63 ~~~~~i~~~~~~~-~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      ..++.|.++. ++ +|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus        26 ~~~~~v~~~~-~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~~  103 (298)
T 3qre_A           26 DAQDAVLYEA-TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRG-RGFCAGAYLGSADAAAGYD  103 (298)
T ss_dssp             --CCSEEEEE-CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC------------
T ss_pred             CCCCeEEEEE-eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhccccc
Confidence            3568899988 67 9999999999999999999999999999999999999999999998 8999999999986410000


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                      ......                   .....+....+.++..|.++||||||+|||+|+|||++|+++|||||++++++|+
T Consensus       104 ~~~~~~-------------------~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~  164 (298)
T 3qre_A          104 KTMAKA-------------------KDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFA  164 (298)
T ss_dssp             ------------------------------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEE
T ss_pred             cccccc-------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEE
Confidence            000000                   0000011222345667899999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                
T Consensus       165 ~pe~~~Gl~p~~g~~~~L~r~vG~~-~A~ellltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~----------------  226 (298)
T 3qre_A          165 AVFARRGLIAEFGISWILPRLTSWA-VALDLLLSGRTFL-AEEAAQLGLVKEVVTPEQLMPRAL----------------  226 (298)
T ss_dssp             CCCCHHHHHCTTSHHHHHHHHSCHH-HHHHHHHHCCEEE-HHHHHHTTSCSEEECGGGHHHHHH----------------
T ss_pred             CcccccCCCcchhHHHHHHHhcCHH-HHHHHHHcCCCCC-HHHHHHcCCCeEecCHHHHHHHHH----------------
Confidence            9999999999999999999999998 9999999999999 999999999999999988765322                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSK  380 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~-sp~al~~tk~~l~~  380 (461)
                                                                          ++|+    +|+.+ ||.+++.+|++++.
T Consensus       227 ----------------------------------------------------~~A~----~la~~~~p~a~~~~K~~l~~  250 (298)
T 3qre_A          227 ----------------------------------------------------EYAE----DIARYCSPSSMAVIKRQVYG  250 (298)
T ss_dssp             ----------------------------------------------------HHHH----HHHHHSCHHHHHHHHHHHHG
T ss_pred             ----------------------------------------------------HHHH----HHHccCCHHHHHHHHHHHHh
Confidence                                                                4444    78888 99999999999998


Q ss_pred             HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCcc
Q 012534          381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLE  438 (461)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~  438 (461)
                      ..         ..++.+.+..|...+..++.++|++||+++|+ +| |+|+|+++..+
T Consensus       251 ~~---------~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~-ek-R~P~f~~~~~~  297 (298)
T 3qre_A          251 DA---------TRDVVEATSHAEVLLREAMPRPDVIEGIVSFL-EK-RPPQFPSLTSS  297 (298)
T ss_dssp             GG---------GC---------------------------------------------
T ss_pred             hh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCCCCCC
Confidence            76         56789999999999999999999999999999 77 89999987443

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=3.3e-55  Score=430.31  Aligned_cols=262  Identities=21%  Similarity=0.270  Sum_probs=228.7

Q ss_pred             ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      .|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......      
T Consensus         4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~------   75 (269)
T 1nzy_A            4 AIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGV------   75 (269)
T ss_dssp             SEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHH------
T ss_pred             eEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCcccCcCHHHHhhcccc------
Confidence            477776 789999999999999999999999999999999999999999999998 899999999986421000      


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                      .........+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        76 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~  139 (269)
T 1nzy_A           76 ----------------AGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHT  139 (269)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHH
T ss_pred             ----------------cChHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccc
Confidence                            0000001124444567788999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                     
T Consensus       140 ~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~---------------------  196 (269)
T 1nzy_A          140 IGIGNDTATSYSLARIVGMR-RAMELMLTNRTLY-PEEAKDWGLVSRVYPKDEFREVAW---------------------  196 (269)
T ss_dssp             HTCCCCTTHHHHHHHHHHHH-HHHHHHHHCCCBC-HHHHHHHTSCSCEECHHHHHHHHH---------------------
T ss_pred             cCCCCCccHHHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCccEeeCHHHHHHHHH---------------------
Confidence            99999999999999999997 9999999999999 999999999999999766653221                     


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                     ++|+    +|+++||.+++.+|++++...    
T Consensus       197 -----------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~----  221 (269)
T 1nzy_A          197 -----------------------------------------------KVAR----ELAAAPTHLQVMAKERFHAGW----  221 (269)
T ss_dssp             -----------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHHHT----
T ss_pred             -----------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhh----
Confidence                                                           4444    799999999999999999876    


Q ss_pred             CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCc
Q 012534          387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASL  437 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~  437 (461)
                           ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|+++++
T Consensus       222 -----~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~-ek-r~p~f~~~~l  265 (269)
T 1nzy_A          222 -----MQPVEECTEFEIQNVIASVTHPHFMPCLTRFL-DG-HRADRPQVEL  265 (269)
T ss_dssp             -----TSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHH-TT-CCTTCCSSCC
T ss_pred             -----cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hc-CCCCCCCCCC
Confidence                 56899999999999999999999999999999 77 8999999875

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=5.5e-55  Score=425.97  Aligned_cols=255  Identities=26%  Similarity=0.470  Sum_probs=222.2

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......     
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-----   75 (257)
T 2ej5_A            3 ETIRYEV-KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGVTEEMDH-----   75 (257)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCC-------CH-----
T ss_pred             CceEEEe-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCcCHHHHhhccch-----
Confidence            4577777 789999999999999999999999999999999999999999999998 899999999987531100     


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                           ......  ..+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        76 ---------------------~~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~  132 (257)
T 2ej5_A           76 ---------------------GDVLRS--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFI  132 (257)
T ss_dssp             ---------------------HHHHHH--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGG
T ss_pred             ---------------------hHHHHH--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCccc
Confidence                                 000111  245677889999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                    
T Consensus       133 ~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~--------------------  190 (257)
T 2ej5_A          133 HVGLVPDAGHLYYLPRLVGRA-KALELAVLGEKVT-AEEAAALGLATKVIPLSDWEEEVK--------------------  190 (257)
T ss_dssp             GGTCCCCTTHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTCCSEEECGGGHHHHHH--------------------
T ss_pred             ccCCCCcchHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCcceecChhHHHHHHH--------------------
Confidence            999999999999999999998 9999999999999 999999999999999888764222                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      ++|+    +|+.+||.+++.+|++++...   
T Consensus       191 ------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---  215 (257)
T 2ej5_A          191 ------------------------------------------------QFAE----RLSAMPTKAIGLIKRLLRESE---  215 (257)
T ss_dssp             ------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHH---
T ss_pred             ------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---
Confidence                                                            3444    799999999999999999876   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                            ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       216 ------~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~~~~~  257 (257)
T 2ej5_A          216 ------ETTFDRYLEREAECQRIAGLTSDHREGVKAFF-EK-RKPLFQGN  257 (257)
T ss_dssp             ------HSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHT-TT-CCCCCCCC
T ss_pred             ------cCCHHHHHHHHHHHHHHHhCChHHHHHHHHHh-cC-CCCCCCCC
Confidence                  46899999999999999999999999999999 77 89999863

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=4.5e-55  Score=428.43  Aligned_cols=254  Identities=19%  Similarity=0.274  Sum_probs=220.6

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++ ...   .... 
T Consensus         8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~---~~~~-   80 (265)
T 3rsi_A            8 ARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLS-DGW---MVRD-   80 (265)
T ss_dssp             -CCEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC---------------
T ss_pred             CCcEEEEE-ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCCC-ccc---ccch-
Confidence            56788887 799999999999999999999999999999999999999999999998 8999999998 211   0000 


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHH-HHHHH-h--hCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYS-LICKI-S--EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL  220 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l-~--~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f  220 (461)
                                               ..+....+. ++..+ .  ++||||||+|||+|+|||++|+++|||||++++++|
T Consensus        81 -------------------------~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f  135 (265)
T 3rsi_A           81 -------------------------GSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATF  135 (265)
T ss_dssp             -----------------------------CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEE
T ss_pred             -------------------------HHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEE
Confidence                                     002212234 66778 8  999999999999999999999999999999999999


Q ss_pred             eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534          221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI  300 (461)
Q Consensus       221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~  300 (461)
                      ++||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.               
T Consensus       136 ~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~---------------  198 (265)
T 3rsi_A          136 GLPEVQRGLVPGAGSMVRLKRQIPYT-KAMEMILTGEPLT-AFEAYHFGLVGHVVPAGTALDKAR---------------  198 (265)
T ss_dssp             ECGGGGGTCCCTTTHHHHHHHHSCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEESTTCHHHHHH---------------
T ss_pred             ECchhccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCccEecChhHHHHHHH---------------
Confidence            99999999999999999999999998 9999999999999 999999999999999998875322               


Q ss_pred             HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534          301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK  380 (461)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~  380 (461)
                                                                           ++|+    +|+++||.+++.+|++++.
T Consensus       199 -----------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~  221 (265)
T 3rsi_A          199 -----------------------------------------------------SLAD----RIVRNGPLAVRNAKEAIVR  221 (265)
T ss_dssp             -----------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHH
Confidence                                                                 3444    7999999999999999998


Q ss_pred             HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      ..         ..+++++++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       222 ~~---------~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~g~  265 (265)
T 3rsi_A          222 SG---------WLAEEDARAIEARLTRPVITSADAREGLAAFK-EK-REARFTGR  265 (265)
T ss_dssp             HT---------TCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-HT-SCCCCCCC
T ss_pred             hh---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCCC
Confidence            76         56899999999999999999999999999999 67 89999874

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=8.6e-55  Score=430.62  Aligned_cols=260  Identities=22%  Similarity=0.292  Sum_probs=231.4

Q ss_pred             CCccceEEEEec--CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhh
Q 012534           63 GAEEFVKGNVHP--NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK  140 (461)
Q Consensus        63 ~~~~~i~~~~~~--~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~  140 (461)
                      |+++ |.++. +  ++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...   
T Consensus        22 m~~~-v~~~~-~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~---   95 (286)
T 3myb_A           22 MSEP-LLLQD-RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEMRAE---   95 (286)
T ss_dssp             --CC-SEEEE-ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECS-SCSBCCBCHHHHHSS---
T ss_pred             Ccee-EEEEE-ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcChhhhhcc---
Confidence            3444 77887 6  89999999999999999999999999999999999999999999998 899999999998640   


Q ss_pred             cCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE
Q 012534          141 DRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL  220 (461)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f  220 (461)
                      .                       .......++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|
T Consensus        96 ~-----------------------~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f  152 (286)
T 3myb_A           96 P-----------------------SREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARF  152 (286)
T ss_dssp             C-----------------------CHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEE
T ss_pred             c-----------------------cHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEE
Confidence            0                       01123345666778889999999999999999999999999999999999999999


Q ss_pred             eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534          221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI  300 (461)
Q Consensus       221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~  300 (461)
                      ++||+++|++ ++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.               
T Consensus       153 ~~pe~~lGl~-~~g~~~~L~r~vG~~-~A~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~---------------  214 (286)
T 3myb_A          153 AVSGINVGLF-CSTPGVALSRNVGRK-AAFEMLVTGEFVS-ADDAKGLGLVNRVVAPKALDDEIE---------------  214 (286)
T ss_dssp             ECGGGGGTCC-CHHHHHHHTTTSCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHH---------------
T ss_pred             ECcccccCCC-CchHHHHHHHHcCHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCHHHHHHHHH---------------
Confidence            9999999999 788999999999998 9999999999999 999999999999999888764322               


Q ss_pred             HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534          301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK  380 (461)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~  380 (461)
                                                                           +||+    +|+++||.+++.+|++++.
T Consensus       215 -----------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~  237 (286)
T 3myb_A          215 -----------------------------------------------------AMVS----KIVAKPRAAVAMGKALFYR  237 (286)
T ss_dssp             -----------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHH
Confidence                                                                 4444    7899999999999999998


Q ss_pred             HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCc
Q 012534          381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASL  437 (461)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~  437 (461)
                      ..         ..+++++++.|.+.+..++.++|++||+++|+ +| |+|+|+++..
T Consensus       238 ~~---------~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFl-ek-r~p~f~g~~p  283 (286)
T 3myb_A          238 QI---------ETDIESAYADAGTTMACNMMDPSALEGVSAFL-EK-RRPEWHTPQP  283 (286)
T ss_dssp             HH---------TSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHH-TT-SCCCCCCCC-
T ss_pred             hh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cc-CCCCCCCCCC
Confidence            87         56899999999999999999999999999999 77 8999998753

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.4e-55  Score=433.92  Aligned_cols=262  Identities=25%  Similarity=0.311  Sum_probs=220.1

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus        11 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   88 (274)
T 3tlf_A           11 DTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVKEIPEDGKVIYERP   88 (274)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBC--------------C
T ss_pred             CceEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCC-CCcccCcCHHHHhhccccccccc
Confidence            5688887 799999999999999999999999999999999999999999999998 89999999999865322000000


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                      ...                    ....+...+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        89 ~~~--------------------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~  148 (274)
T 3tlf_A           89 YLS--------------------TYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHV  148 (274)
T ss_dssp             TTC--------------------SGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGG
T ss_pred             hhh--------------------HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECccc
Confidence            000                    000111223455678999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCC--CCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK--RISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~--~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      ++|++| +|++++|++++|.. ++++|++||+  .|+ |+||+++||||+|||++++.+.+.                  
T Consensus       149 ~~Gl~p-~g~~~~L~r~vG~~-~A~~l~ltg~~~~~~-A~eA~~~GLv~~vv~~~~l~~~a~------------------  207 (274)
T 3tlf_A          149 SIGLVA-GRELVRVSRVLPRS-IALRMALMGKHERMS-AQRAYELGLISEIVEHDRLLERAH------------------  207 (274)
T ss_dssp             GGTCCC-CHHHHHHTTTSCHH-HHHHHHHHGGGCCEE-HHHHHHHTSSSEEECGGGHHHHHH------------------
T ss_pred             ccCccc-chHHHHHHHHhCHH-HHHHHHHcCCCCccC-HHHHHHCCCCCeecCHHHHHHHHH------------------
Confidence            999999 99999999999998 9999999999  999 999999999999999888764222                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|    ++|+++||.+++.+|++++... 
T Consensus       208 --------------------------------------------------~~a----~~la~~~~~a~~~~K~~l~~~~-  232 (274)
T 3tlf_A          208 --------------------------------------------------EIA----DIVNSNAPLAVRGTRLAILKGL-  232 (274)
T ss_dssp             --------------------------------------------------HHH----HHHHTSCHHHHHHHHHHHHHHT-
T ss_pred             --------------------------------------------------HHH----HHHHhCCHHHHHHHHHHHHHHh-
Confidence                                                              344    4799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                              ..+++++++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       233 --------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~g~  274 (274)
T 3tlf_A          233 --------NVPLHEAEILAETFRERVLRTEDAAEGPRAFV-EK-RQPNWQCR  274 (274)
T ss_dssp             --------TSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             --------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCCC
Confidence                    56899999999999999999999999999999 78 89999863

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.6e-54  Score=424.67  Aligned_cols=257  Identities=18%  Similarity=0.221  Sum_probs=217.5

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      |+++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.| ++|+|||||.| ++||+|+|++++........
T Consensus         4 m~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   80 (267)
T 3hp0_A            4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLP-EVFCFGADFQEIYQEMKRGR   80 (267)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCS-SCSBCCBCHHHHHHTTTTTC
T ss_pred             CCCceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCC-CceecCcCHHHHHhcccChH
Confidence            4567798987 799999999999999999999999999999999986 59999999998 89999999999876321111


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                      .   ..                      .+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        81 ~---~~----------------------~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  135 (267)
T 3hp0_A           81 K---QA----------------------SSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSL  135 (267)
T ss_dssp             C---SC----------------------CCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEEC
T ss_pred             H---HH----------------------HHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEEC
Confidence            0   00                      0223445677889999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++| +++|++++|.. +|++|++||+.|+ |+||+++||||+|||+.+..  +                  
T Consensus       136 pe~~~Gl~p~~g-~~~l~r~vG~~-~A~ellltg~~i~-A~eA~~~GLV~~vv~~~~~~--~------------------  192 (267)
T 3hp0_A          136 SELLFGLYPACV-LPFLIRRIGRQ-KAHYMTLMTKPIS-VQEASEWGLIDAFDAESDVL--L------------------  192 (267)
T ss_dssp             CGGGGTCCCTTT-HHHHHHHHCHH-HHHHHHHHCCCBC-HHHHHHHTSSSCBCSCTTHH--H------------------
T ss_pred             chhccCcCchhH-HHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCcceecCCHHHH--H------------------
Confidence            999999999886 67899999998 9999999999999 99999999999999864421  1                  


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                        .++|+    +|+++||.+++.+|++++...
T Consensus       193 --------------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~~  218 (267)
T 3hp0_A          193 --------------------------------------------------RKHLL----RLRRLNKKGIAHYKQFMSSLD  218 (267)
T ss_dssp             --------------------------------------------------HHHHH----HHTTSCHHHHHHHHHHHHHHC
T ss_pred             --------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhcc
Confidence                                                              14444    799999999999999999854


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                                ..+.+.++.|.+.+..++.++|++||+++|+ +| |+|+|++..
T Consensus       219 ----------~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~-ek-r~P~~~~~~  260 (267)
T 3hp0_A          219 ----------HQVSRAKATALTANQDMFSDPQNQMGIIRYV-ET-GQFPWEDQE  260 (267)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHT-TS-CCC------
T ss_pred             ----------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHH-hc-CCCCCCCCC
Confidence                      3478888999999999999999999999999 78 899998753

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=1.1e-54  Score=424.00  Aligned_cols=255  Identities=22%  Similarity=0.310  Sum_probs=225.3

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      +..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....     
T Consensus         4 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~-----   76 (258)
T 2pbp_A            4 FVSIAARQ-EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RAFAAGADIQEMAKDDP-----   76 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCCCHHHHHTCCH-----
T ss_pred             cceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccc-----
Confidence            45677777 789999999999999999999999999999999999999999999997 89999999998753110     


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                          .   ...+...+ .++..|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        77 --------------------~---~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe  132 (258)
T 2pbp_A           77 --------------------I---RLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPE  132 (258)
T ss_dssp             --------------------H---HHHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGG
T ss_pred             --------------------h---hHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcc
Confidence                                0   00111112 45678899999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                   
T Consensus       133 ~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-------------------  191 (258)
T 2pbp_A          133 VNLGVMPGAGGTQRLTKLIGPK-RALEWLWTGARMS-AKEAEQLGIVNRVVSPELLMEETM-------------------  191 (258)
T ss_dssp             GGGTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECGGGHHHHHH-------------------
T ss_pred             cccCCCCcccHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCcceeeChHHHHHHHH-------------------
Confidence            9999999999999999999997 9999999999999 999999999999999888764222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       +||+    +|+++||.+++.+|++++...  
T Consensus       192 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  216 (258)
T 2pbp_A          192 -------------------------------------------------RLAG----RLAEQPPLALRLIKEAVQKAV--  216 (258)
T ss_dssp             -------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHH--
T ss_pred             -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh--
Confidence                                                             4444    799999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                             ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       217 -------~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~~~~~  258 (258)
T 2pbp_A          217 -------DYPLYEGMQFERKNFYLLFASEDQKEGMAAFL-EK-RKPRFQGK  258 (258)
T ss_dssp             -------HSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             -------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cc-CCCCCCCC
Confidence                   46899999999999999999999999999999 67 89999863

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=3.1e-56  Score=436.59  Aligned_cols=257  Identities=26%  Similarity=0.425  Sum_probs=224.2

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus         6 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~   82 (265)
T 3qxz_A            6 VTELHEEI-RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAP-PAFCSGAQISAAAETFAAP-RN   82 (265)
T ss_dssp             CCEEEEEE-ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCSTTCTTCCCCC-CS
T ss_pred             cceEEEEE-ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CccccCcChHHHhhccchh-HH
Confidence            45688887 799999999999999999999999999999999999999999999998 8999999999875421110 00


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                      .                          ++.. +.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus        83 ~--------------------------~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe  135 (265)
T 3qxz_A           83 P--------------------------DFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQ  135 (265)
T ss_dssp             S--------------------------CCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCG
T ss_pred             H--------------------------HHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcc
Confidence            0                          1111 234557889999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                   
T Consensus       136 ~~~Gl~p~~g~~~~l~r~vG~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~-------------------  194 (265)
T 3qxz_A          136 VRFGVAPDALAHWTLPRLVGTA-VAAELLLTGASFS-AQRAVETGLANRCLPAGKVLGAAL-------------------  194 (265)
T ss_dssp             GGGTSCCCTTHHHHTHHHHHHH-HHHHHHHHCCCBC-HHHHHHHTSCSEEECHHHHHHHHH-------------------
T ss_pred             cccCcCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHCCCccEeeCHHHHHHHHH-------------------
Confidence            9999999999999999999997 9999999999999 999999999999999876653222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSKVAS  383 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~-sp~al~~tk~~l~~~~~  383 (461)
                                                                       ++|+    +|+++ ||.+++.+|++++... 
T Consensus       195 -------------------------------------------------~~a~----~la~~~~p~a~~~~K~~l~~~~-  220 (265)
T 3qxz_A          195 -------------------------------------------------RMAH----DIATNVAPESAALTKRLLWDAQ-  220 (265)
T ss_dssp             -------------------------------------------------HHHH----HHHHHSCHHHHHHHHHHHHHHH-
T ss_pred             -------------------------------------------------HHHH----HHHccCCHHHHHHHHHHHHHhh-
Confidence                                                             3444    78888 9999999999999876 


Q ss_pred             hcCCCccccCCHHHH--HHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGV--MKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~--l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                              ..++.++  ++.|...+..++.++|++||+++|+ +| |+|+|++++
T Consensus       221 --------~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~-ek-r~P~f~g~r  265 (265)
T 3qxz_A          221 --------MTGMSAAEVAARETADHLRLMGSQDAAEGPRAFI-DG-RPPRWAGQR  265 (265)
T ss_dssp             --------HHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHH-HT-SCCCCCCC-
T ss_pred             --------cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH-cC-CCCCCCCCC
Confidence                    4567788  9999999999999999999999999 67 899999863

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=4.4e-55  Score=426.27  Aligned_cols=250  Identities=21%  Similarity=0.292  Sum_probs=222.0

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........   
T Consensus         7 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~---   81 (256)
T 3trr_A            7 DEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFCAGMDLKAFVSGEAVLS---   81 (256)
T ss_dssp             CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGG-GCCCCCBCHHHHHHTCCCEE---
T ss_pred             CceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceecCcCHHHhccccchhh---
Confidence            4578887 799999999999999999999999999999999999999999999998 89999999999875210000   


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                        .               .      .+     . +..+ .+||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        82 --~---------------~------~~-----~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~  131 (256)
T 3trr_A           82 --E---------------R------GL-----G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEV  131 (256)
T ss_dssp             --T---------------T------EE-----T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGG
T ss_pred             --h---------------h------hh-----h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhh
Confidence              0               0      01     1 1234 89999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                    
T Consensus       132 ~~Gl~p~~g~~~~l~r~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~--------------------  189 (256)
T 3trr_A          132 KRGLVAGAGGLLRLPNRIPYQ-VAMELALTGESFT-AEDAAKYGFINRLVDDGQALDTAL--------------------  189 (256)
T ss_dssp             GGTCCCCSSHHHHHHHHSCHH-HHHHHHHHCCCEE-HHHHGGGTCCSEEECTTCHHHHHH--------------------
T ss_pred             ccCCCCCccHHHHHHHHhCHH-HHHHHHHhCCCcC-HHHHHHCCCeeEecChHHHHHHHH--------------------
Confidence            999999999999999999998 9999999999999 999999999999999998874322                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      ++|+    +|+++||.+++.+|++++...   
T Consensus       190 ------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---  214 (256)
T 3trr_A          190 ------------------------------------------------ELAA----KITANGPLAVAATKRIIIESA---  214 (256)
T ss_dssp             ------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHGG---
T ss_pred             ------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhh---
Confidence                                                            3443    799999999999999999876   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                            ..+++++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       215 ------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~g~  256 (256)
T 3trr_A          215 ------SWAPEEAFAKQGEILMPIFVSEDAKEGAKAFA-EK-RAPVWQGK  256 (256)
T ss_dssp             ------GSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             ------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-cC-CCCCCCCC
Confidence                  56899999999999999999999999999999 77 89999874

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=3.4e-55  Score=428.37  Aligned_cols=257  Identities=19%  Similarity=0.256  Sum_probs=223.9

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-cCCCccccCCChhhHHHHhhhcC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-SGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg-~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      +|+.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+||||| .|+++||+|+|++++....... 
T Consensus         2 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~-   78 (261)
T 1ef8_A            2 SYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP-   78 (261)
T ss_dssp             CCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT-
T ss_pred             CcceEEEEE-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh-
Confidence            456788887 7899999999999999999999999999999999999 99999999 8768999999999875421100 


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                       ..                          ++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        79 -~~--------------------------~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  131 (261)
T 1ef8_A           79 -LS--------------------------YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSM  131 (261)
T ss_dssp             -TC--------------------------TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred             -HH--------------------------HHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeC
Confidence             00                          112235667789999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                 
T Consensus       132 pe~~~Gl~p~~g~~~~l~r~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-----------------  192 (261)
T 1ef8_A          132 TPVNLGVPYNLVGIHNLTRDAGFH-IVKELIFTASPIT-AQRALAVGILNHVVEVEELEDFTL-----------------  192 (261)
T ss_dssp             CHHHHTCCCCHHHHHTTSSSSCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECHHHHHHHHH-----------------
T ss_pred             chhccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHCCCcccccCHHHHHHHHH-----------------
Confidence            999999999999999999999997 9999999999999 999999999999998766653222                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         +||+    +|+++||.+++.+|++++...
T Consensus       193 ---------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~  217 (261)
T 1ef8_A          193 ---------------------------------------------------QMAH----HISEKAPLAIAVIKEELRVLG  217 (261)
T ss_dssp             ---------------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh
Confidence                                                               4444    799999999999999999876


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHH--hhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVAL--RSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~--~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                               ..+++++++.|.+.+.  .++.++|++||+++|+ +| |+|+|+++
T Consensus       218 ---------~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~-ek-r~p~~~~~  261 (261)
T 1ef8_A          218 ---------EAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFL-EK-RKPNFVGH  261 (261)
T ss_dssp             ---------HCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             ---------cCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHH-cc-CCCCCCCC
Confidence                     4578889999999998  8999999999999999 67 89999863

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=8.9e-55  Score=425.81  Aligned_cols=260  Identities=17%  Similarity=0.248  Sum_probs=222.7

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCcc-ccCCChhhHHHHhhhcC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF-CAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~F-caG~Dl~~~~~~~~~~~  142 (461)
                      +++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++| |+|+|++++........
T Consensus         2 s~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FF~aG~Dl~~~~~~~~~~~   79 (263)
T 3lke_A            2 SLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKH-RAYFSSGPRLEDLLICASDQS   79 (263)
T ss_dssp             -CCSEEEEE-CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESC-TTEEECBSCHHHHHHHHHCSS
T ss_pred             CCcEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-CceEecCcCHHHHHhhcccCC
Confidence            467788887 799999999999999999999999999999999999999999999998 788 99999999875211110


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                             ......++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        80 -----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  136 (263)
T 3lke_A           80 -----------------------DVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLE  136 (263)
T ss_dssp             -----------------------SHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEEC
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeC
Confidence                                   012233566667888999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecC-CCChHHHHHHHHhcccCCChHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP-SGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~-~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+||| ++++.+.+.                
T Consensus       137 pe~~~Gl~p~~g~~~~L~~~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~a~----------------  198 (263)
T 3lke_A          137 NFHKMGISPDLGASYFLPRIIGYE-QTMNLLLEGKLFT-SEEALRLGLIQEICENKQELQERVK----------------  198 (263)
T ss_dssp             CHHHHTCCCCTTHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEESSHHHHHHHHH----------------
T ss_pred             chHhhCCCCCccHHHHHHHHhCHH-HHHHHHHhCCCcC-HHHHHHcCCCcEecCChhHHHHHHH----------------
Confidence            999999999999999999999998 9999999999999 999999999999998 666653222                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          +||+    +|+++||.+++.+|++++..
T Consensus       199 ----------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~  222 (263)
T 3lke_A          199 ----------------------------------------------------NYLK----AVSEGYVPAIAATKKLLKGK  222 (263)
T ss_dssp             ----------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHTT
T ss_pred             ----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHh
Confidence                                                                3444    89999999999999999987


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN  433 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~  433 (461)
                      .         ..+++++++.|...+..++.++|++||+++|+ +| ++|.|.
T Consensus       223 ~---------~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~-~~-~~~~~~  263 (263)
T 3lke_A          223 A---------AEELKQQLEQETEELVALFKQTEIKKRLEALV-EG-HHHHHH  263 (263)
T ss_dssp             H---------HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC-----------
T ss_pred             h---------hcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhh-cc-CCCCCC
Confidence            6         45799999999999999999999999999999 66 788884

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=9.5e-55  Score=427.59  Aligned_cols=254  Identities=18%  Similarity=0.264  Sum_probs=225.1

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCC
Q 012534           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLK  153 (461)
Q Consensus        74 ~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (461)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.....              
T Consensus        19 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~--------------   84 (272)
T 1hzd_A           19 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS--------------   84 (272)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH--------------
T ss_pred             cCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccCh--------------
Confidence            689999999999999999999999999999999999999999999998679999999998642100              


Q ss_pred             CCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCc
Q 012534          154 CGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV  233 (461)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~  233 (461)
                                   .....+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++
T Consensus        85 -------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  151 (272)
T 1hzd_A           85 -------------SEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGG  151 (272)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCS
T ss_pred             -------------HHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCc
Confidence                         0112244455678889999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCC
Q 012534          234 GFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG  313 (461)
Q Consensus       234 G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~  313 (461)
                      |++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+                             
T Consensus       152 g~~~~l~r~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~~-----------------------------  200 (272)
T 1hzd_A          152 GGTQRLPRAIGMS-LAKELIFSARVLD-GKEAKAVGLISHVLEQNQEGDAA-----------------------------  200 (272)
T ss_dssp             SHHHHHHHHHCHH-HHHHHHHHTCEEE-HHHHHHHTSCSEEECCCTTSCHH-----------------------------
T ss_pred             hHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHCCCcceecChhhhhHHH-----------------------------
Confidence            9999999999997 9999999999999 99999999999999998875311                             


Q ss_pred             CchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccC
Q 012534          314 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS  393 (461)
Q Consensus       314 ~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~  393 (461)
                                                             .+.|.+++++|+.+||.+++.+|++++...         ..
T Consensus       201 ---------------------------------------~~~a~~~a~~la~~~p~a~~~~K~~l~~~~---------~~  232 (272)
T 1hzd_A          201 ---------------------------------------YRKALDLAREFLPQGPVAMRVAKLAINQGM---------EV  232 (272)
T ss_dssp             ---------------------------------------HHHHHHHHHTTTTSCHHHHHHHHHHHHHHH---------TS
T ss_pred             ---------------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cC
Confidence                                                   133444445899999999999999999876         56


Q ss_pred             CHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          394 KLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       394 ~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      ++.++++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       233 ~~~~~l~~e~~~~~~~~~s~d~~egi~af~-ek-r~p~~~g~  272 (272)
T 1hzd_A          233 DLVTGLAIEEACYAQTIPTKDRLEGLLAFK-EK-RPPRYKGE  272 (272)
T ss_dssp             CHHHHHHHHHHHHHTTTTCHHHHHHHHHHT-TT-SCCCCCCC
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-cC-CCCCCCCC
Confidence            899999999999999999999999999999 67 89999863

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=5.3e-54  Score=420.80  Aligned_cols=255  Identities=22%  Similarity=0.338  Sum_probs=226.7

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-cCCCccccCCChhhHHHHhhhcC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-SGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg-~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      .++.+.++. +++|++|||||| ++|+||.+|+.+|.++++.++.|+++|+||||| .| ++||+|+|++++.. .  . 
T Consensus         7 ~~~~i~~~~-~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~-~--~-   79 (265)
T 2ppy_A            7 KKQYLTVFK-EDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVP-KFFSAGADINFLRS-A--D-   79 (265)
T ss_dssp             ECSSEEEEE-ETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECST-TEEECCBCHHHHTT-S--C-
T ss_pred             CCCeEEEEe-eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCC-CeeeeCcCHHHHhc-c--c-
Confidence            356788887 789999999999 999999999999999999999999999999999 76 89999999998642 0  0 


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHH-HHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCc-eE
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT-LL  220 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a-~f  220 (461)
                                           .   ....+...+ +.++.+|.++||||||+|||+|+|||++|+++|||||+++++ +|
T Consensus        80 ---------------------~---~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f  135 (265)
T 2ppy_A           80 ---------------------P---RFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKI  135 (265)
T ss_dssp             ---------------------H---HHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCE
T ss_pred             ---------------------h---hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEE
Confidence                                 0   011123334 567788999999999999999999999999999999999999 99


Q ss_pred             eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534          221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI  300 (461)
Q Consensus       221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~  300 (461)
                      ++||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.               
T Consensus       136 ~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~---------------  198 (265)
T 2ppy_A          136 GLPEVSLGVLAGTGGTQRLARLIGYS-RALDMNITGETIT-PQEALEIGLVNRVFPQAETRERTR---------------  198 (265)
T ss_dssp             ECCGGGGTCCCTTTHHHHHHHHHCHH-HHHHHHHHCCCBC-HHHHHHHTSSSEEECGGGHHHHHH---------------
T ss_pred             ECcccccCCCCCchHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHCCCcceecCHHHHHHHHH---------------
Confidence            99999999999999999999999997 9999999999999 999999999999999888764322               


Q ss_pred             HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534          301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK  380 (461)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~  380 (461)
                                                                           ++|+    +|+++||.+++.+|++++.
T Consensus       199 -----------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~  221 (265)
T 2ppy_A          199 -----------------------------------------------------EYAR----KLANSATYAVSNIKLAIMN  221 (265)
T ss_dssp             -----------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHH
Confidence                                                                 4444    7999999999999999998


Q ss_pred             HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      ..         ..+++++++.|.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus       222 ~~---------~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~-ek-r~p~~~~  264 (265)
T 2ppy_A          222 GK---------EMPLNVAIRYEGELQNLLFRSEDAKEGLSAFL-EK-RQPNWKG  264 (265)
T ss_dssp             HT---------TSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCCC
T ss_pred             hh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCC
Confidence            76         56899999999999999999999999999999 77 8999986

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=2.5e-54  Score=427.48  Aligned_cols=256  Identities=22%  Similarity=0.288  Sum_probs=226.9

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      +..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....     
T Consensus        32 ~~~v~~~~-~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~-----  104 (287)
T 2vx2_A           32 PRPTSARQ-LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEG-PVFSSGHDLKELTEEQG-----  104 (287)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESS-SEEECCSCCC-CCGGGC-----
T ss_pred             CcceEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhcccc-----
Confidence            45678887 789999999999999999999999999999999999999999999998 89999999998642100     


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                           ......++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus       105 ---------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe  163 (287)
T 2vx2_A          105 ---------------------RDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPG  163 (287)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCG
T ss_pred             ---------------------hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECch
Confidence                                 01122344556678889999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|+++ |++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                   
T Consensus       164 ~~lGl~p~~g~~~-L~r~vG~~-~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~-------------------  221 (287)
T 2vx2_A          164 VNVGLFCSTPGVA-LARAVPRK-VALEMLFTGEPIS-AQEALLHGLLSKVVPEAELQEETM-------------------  221 (287)
T ss_dssp             GGGTCCCHHHHHH-HHTTSCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHH-------------------
T ss_pred             hhhCCCCchHHHH-HHHHhhHH-HHHHHHHhCCCCC-HHHHHHCCCcceecCHHHHHHHHH-------------------
Confidence            9999999999999 99999997 9999999999999 999999999999999888764322                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       +||+    +|+++||.+++.+|++++...  
T Consensus       222 -------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~--  246 (287)
T 2vx2_A          222 -------------------------------------------------RIAR----KIASLSRPVVSLGKATFYKQL--  246 (287)
T ss_dssp             -------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHT--
T ss_pred             -------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh--
Confidence                                                             4444    799999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                             ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus       247 -------~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~-ek-r~p~f~g  287 (287)
T 2vx2_A          247 -------PQDLGTAYYLTSQAMVDNLALRDGQEGITAFL-QK-RKPVWSH  287 (287)
T ss_dssp             -------TSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCCC
T ss_pred             -------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCC
Confidence                   56899999999999999999999999999999 77 8999974

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=2.3e-54  Score=425.69  Aligned_cols=264  Identities=22%  Similarity=0.288  Sum_probs=204.5

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      ..++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus         6 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~   83 (276)
T 2j5i_A            6 GRWKTVKVEI-EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEYFREVDAGP   83 (276)
T ss_dssp             TCCSSEEEEE-ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEEST-TCSBCCBCHHHHHHHHHHSC
T ss_pred             CCCceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCCcCCcChhhHhhccccch
Confidence            3466788887 789999999999999999999999999999999999999999999998 89999999999864221110


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHH-HHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSL-ICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                      ..                       ....+....+.+ +..|.++||||||+|||+|+|||++|+++||+||++++++|+
T Consensus        84 ~~-----------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~  140 (276)
T 2j5i_A           84 EI-----------------------LQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFG  140 (276)
T ss_dssp             TT-----------------------HHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEE
T ss_pred             hH-----------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEe
Confidence            00                       001122222333 567899999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                
T Consensus       141 ~pe~~~Gl~p~~g~~~~l~r~vG~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~----------------  202 (276)
T 2j5i_A          141 LSEINWGIPPGNLVSKAMADTVGHR-QSLMYIMTGKTFG-GQKAAEMGLVNESVPLAQLREVTI----------------  202 (276)
T ss_dssp             CGGGGGTCCCCTTHHHHHHHHSCHH-HHHHHHHHCCEEE-HHHHHHHTSSSEEECHHHHHHHHH----------------
T ss_pred             CcccccCCCCcchHHHHHHHHhCHH-HHHHHHHhCCccc-HHHHHHcCCccEeeCHHHHHHHHH----------------
Confidence            9999999999999999999999998 9999999999999 999999999999999776653222                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          ++|+    +|+++||.+++.+|++++..
T Consensus       203 ----------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~  226 (276)
T 2j5i_A          203 ----------------------------------------------------ELAR----NLLEKNPVVLRAAKHGFKRC  226 (276)
T ss_dssp             ----------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHH
Confidence                                                                4444    79999999999999999987


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhh--cCCC-cHHHHHHhhhcCCC-CCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRS--SLRS-DFAEGVRAVLVDKD-QNPKWNPA  435 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~--~~s~-d~~egv~afl~~K~-r~P~w~~~  435 (461)
                      .         ..++.++++.|...+..+  +.++ |++||+++|+ +|+ |+|+|++.
T Consensus       227 ~---------~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~-ekr~r~p~~~~~  274 (276)
T 2j5i_A          227 R---------ELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFL-DDKSIKPGLQAY  274 (276)
T ss_dssp             T---------TSCHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred             h---------cCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH-hcccCCCCcccC
Confidence            6         568999999888876654  6789 9999999999 674 69999874

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=3e-54  Score=427.62  Aligned_cols=262  Identities=19%  Similarity=0.229  Sum_probs=219.5

Q ss_pred             CCccceEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           63 GAEEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLn-rP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      ..++.|.++. +++|++|||| ||+++|+||.+|+.+|.++|+.++.|+. |+|||||.| ++||+|+|++++.......
T Consensus        20 ~~~~~v~~~~-~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G-~~FcaG~Dl~~~~~~~~~~   96 (291)
T 2fbm_A           20 STYRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAG-SVFCCGLDFGYFVKHLRNN   96 (291)
T ss_dssp             -CCSSEEEEE-CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECS-SCSBCCBCHHHHHHHHHHC
T ss_pred             CCcceEEEEE-eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCC-CCccCCcCHHHHHhccccc
Confidence            4677888887 7899999999 7999999999999999999999999875 999999998 8999999999986422110


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                      .                       ......+......++..|.++||||||+|||+|+|||++|+++||||||+++++|+
T Consensus        97 ~-----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~  153 (291)
T 2fbm_A           97 R-----------------------NTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQ  153 (291)
T ss_dssp             H-----------------------HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEE
T ss_pred             c-----------------------hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEE
Confidence            0                       00111233445567788999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                
T Consensus       154 ~pe~~lGl~p~~g~~~~L~r~vG~~-~A~el~ltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~----------------  215 (291)
T 2fbm_A          154 TPYTTFGQSPDGCSSITFPKMMGKA-SANEMLIAGRKLT-AREACAKGLVSQVFLTGTFTQEVM----------------  215 (291)
T ss_dssp             CCHHHHTCCCCTTHHHHHHHHHCHH-HHHHHHTSCCEEE-HHHHHHTTSCSEEECSTTSHHHHH----------------
T ss_pred             CcHHhcCCCCcccHHHHHHHHHhHH-HHHHHHHcCCccC-HHHHHHCCCcceecChhHHHHHHH----------------
Confidence            9999999999999999999999997 9999999999999 999999999999999998875322                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          ++|+    +|+++||.+++.+|++++..
T Consensus       216 ----------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~  239 (291)
T 2fbm_A          216 ----------------------------------------------------IQIK----ELASYNPIVLEECKALVRCN  239 (291)
T ss_dssp             ----------------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHTT
T ss_pred             ----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhh
Confidence                                                                4444    79999999999999999976


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhh-hcCCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAV-LVDKDQNPKWNPA  435 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~af-l~~K~r~P~w~~~  435 (461)
                      .         ..+++++++.|.+.+..++.++|++||+++| + +| |+|+|+++
T Consensus       240 ~---------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~-ek-R~P~f~~~  283 (291)
T 2fbm_A          240 I---------KLELEQANERECEVLRKIWSSAQGIESMLKIPL-LG-YKAAFPPR  283 (291)
T ss_dssp             T---------HHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC--------------
T ss_pred             h---------ccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh-cC-CCCCCCCC
Confidence            5         3478999999999999999999999999999 9 77 89999986

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=1.5e-54  Score=426.11  Aligned_cols=261  Identities=18%  Similarity=0.229  Sum_probs=220.6

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      ..++.|.++.++++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... 
T Consensus        10 ~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-   86 (272)
T 3qk8_A           10 QDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG-KAFSSGGSFELIDETIGDY-   86 (272)
T ss_dssp             GGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESS-SCSBCEECHHHHHHHHHCH-
T ss_pred             CCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCeeCCcCHHHHhccccch-
Confidence            356789998844589999999999 9999999999999999999999999999999998 8999999999986532110 


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                              .....++...+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++
T Consensus        87 ------------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  142 (272)
T 3qk8_A           87 ------------------------EGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIID  142 (272)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEEC
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEEC
Confidence                                    11223555667788899999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                 
T Consensus       143 pe~~~Gl~p~~g~~~~L~r~vG~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~-----------------  203 (272)
T 3qk8_A          143 GHTKLGVAAGDHAAICWPLLVGMA-KAKYYLLTCETLS-GEEAERIGLVSTCVDDDEVLPTAT-----------------  203 (272)
T ss_dssp             CHHHHTSCSCSSHHHHTHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHH-----------------
T ss_pred             chhccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCCcEeeCHhHHHHHHH-----------------
Confidence            999999999999999999999998 9999999999999 999999999999999988764222                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         ++|+    +|+++||.+++.+|++++...
T Consensus       204 ---------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~  228 (272)
T 3qk8_A          204 ---------------------------------------------------RLAE----NLAQGAQNAIRWTKRSLNHWY  228 (272)
T ss_dssp             ---------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHHH
Confidence                                                               3444    799999999999999999764


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                      ..      ....+++.++.|    ..++.++|++||+++|+ +| |+|+|+++.
T Consensus       229 ~~------~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~-ek-R~p~f~g~~  270 (272)
T 3qk8_A          229 RM------FGPTFETSLGLE----FLGFTGPDVQEGLAAHR-QK-RPARFTDRT  270 (272)
T ss_dssp             HH------THHHHHHHHHHH----HHHTTSSHHHHHHHHHH-TT-SCCCC----
T ss_pred             hh------cchhHHHHHHHH----HHHhCCHHHHHHHHHHH-cC-CCCCCCCCC
Confidence            10      012344444444    46789999999999999 77 899999864

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=7.6e-55  Score=428.77  Aligned_cols=260  Identities=20%  Similarity=0.206  Sum_probs=219.1

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-----cCCCccccCCChhhHHHHh
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-----SGPRAFCAGMDIKGVVAEI  138 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg-----~G~~~FcaG~Dl~~~~~~~  138 (461)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||     .|+++||+|+|++++....
T Consensus         8 ~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~   86 (275)
T 4eml_A            8 HYDDILYYK-AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG   86 (275)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC------
T ss_pred             CCceEEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc
Confidence            467788987 7999999999999999999999999999999999999999999999     8867999999999986411


Q ss_pred             hhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCc
Q 012534          139 QKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT  218 (461)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a  218 (461)
                      ......                          ......+.++..|.++||||||+|||+|+|||++|+++||||||++++
T Consensus        87 ~~~~~~--------------------------~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a  140 (275)
T 4eml_A           87 YIDDQG--------------------------TPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNA  140 (275)
T ss_dssp             ----------------------------------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             ccchhh--------------------------HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCC
Confidence            100000                          000112456778999999999999999999999999999999999999


Q ss_pred             eEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHH
Q 012534          219 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQ  298 (461)
Q Consensus       219 ~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~  298 (461)
                      +|++||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.             
T Consensus       141 ~f~~pe~~~Gl~p~~~g~~~L~r~vG~~-~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~-------------  205 (275)
T 4eml_A          141 IFGQTGPKVGSFDGGFGSSYLARIVGQK-KAREIWYLCRQYS-AQEAERMGMVNTVVPVDRLEEEGI-------------  205 (275)
T ss_dssp             EEECCHHHHTCCCCSTTTHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHH-------------
T ss_pred             EEECcccccCCCCCccHHHHHHHHhHHH-HHHHHHHhCCCcC-HHHHHHcCCccEeeCHHHHHHHHH-------------
Confidence            9999999999999988899999999998 9999999999999 999999999999999988764322             


Q ss_pred             HHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 012534          299 DIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYF  378 (461)
Q Consensus       299 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l  378 (461)
                                                                             ++|+    +|+++||.+++.+|+++
T Consensus       206 -------------------------------------------------------~~a~----~la~~~~~a~~~~K~~l  226 (275)
T 4eml_A          206 -------------------------------------------------------QWAK----EILSKSPLAIRCLKAAF  226 (275)
T ss_dssp             -------------------------------------------------------HHHH----HHHTSCHHHHHHHHHHH
T ss_pred             -------------------------------------------------------HHHH----HHHhCCHHHHHHHHHHH
Confidence                                                                   4444    79999999999999999


Q ss_pred             HHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          379 SKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       379 ~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                      +...          ....+..+.|.+.+..++.++|++||++||+ +| |+|+|++..
T Consensus       227 ~~~~----------~~~~~~~~~~~~~~~~~~~s~d~~eg~~AF~-ek-R~p~f~~~~  272 (275)
T 4eml_A          227 NADC----------DGQAGLQELAGNATLLYYMTEEGSEGKQAFL-EK-RPPDFSQYP  272 (275)
T ss_dssp             HHTT----------SHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCTTCC
T ss_pred             Hhhh----------ccchhHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCCCC
Confidence            9754          1244555677777778899999999999999 78 899999854

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=1.5e-54  Score=429.35  Aligned_cols=264  Identities=18%  Similarity=0.207  Sum_probs=220.5

Q ss_pred             cCCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           62 AGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        62 ~~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      .+.++.|+++.+.++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.......
T Consensus        23 ~~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  102 (289)
T 3t89_A           23 SEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYK  102 (289)
T ss_dssp             CTTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC---------
T ss_pred             CCCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccch
Confidence            35678899988338999999999999999999999999999999999999999999999866999999999875421100


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                      ..                         ........+.++..|.++||||||+|||+|+|||++|+++|||||++++++|+
T Consensus       103 ~~-------------------------~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~  157 (289)
T 3t89_A          103 DD-------------------------SGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFG  157 (289)
T ss_dssp             --------------------------------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEE
T ss_pred             hh-------------------------hHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEe
Confidence            00                         00011123457778999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                
T Consensus       158 ~pe~~~Gl~~~~~g~~~L~r~vG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~----------------  219 (289)
T 3t89_A          158 QTGPKVGSFDGGWGASYMARIVGQK-KAREIWFLCRQYD-AKQALDMGLVNTVVPLADLEKETV----------------  219 (289)
T ss_dssp             CCHHHHTCCCCSTTTHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHH----------------
T ss_pred             ccccccCCCCCchHHHHHHHhcCHH-HHHHHHHcCCccc-HHHHHHCCCceEeeCHHHHHHHHH----------------
Confidence            9999999888888899999999998 9999999999999 999999999999999988764322                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          ++|+    +|+.+||.+++.+|++++..
T Consensus       220 ----------------------------------------------------~~A~----~la~~~~~a~~~~K~~l~~~  243 (289)
T 3t89_A          220 ----------------------------------------------------RWCR----EMLQNSPMALRCLKAALNAD  243 (289)
T ss_dssp             ----------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHT
T ss_pred             ----------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhh
Confidence                                                                3444    79999999999999999976


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                      .         . ...+..+.|.+.+..++.++|++||+++|+ +| |+|+|++..
T Consensus       244 ~---------~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~-ek-R~P~f~~~~  286 (289)
T 3t89_A          244 C---------D-GQAGLQELAGNATMLFYMTEEGQEGRNAFN-QK-RQPDFSKFK  286 (289)
T ss_dssp             T---------S-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHH-TT-SCCCCTTSC
T ss_pred             c---------c-cchHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCCCC
Confidence            4         1 234455677777788899999999999999 78 899999764

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=5.2e-55  Score=427.10  Aligned_cols=252  Identities=18%  Similarity=0.184  Sum_probs=203.2

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus        10 m~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   87 (262)
T 3r9q_A           10 QPAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN-GTFCAGADLKAMGTDRGNELHP   87 (262)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCTTTTTSTTSCCCCT
T ss_pred             CCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHhccChhhHHH
Confidence            44588887 799999999999999999999999999999999999999999999998 8999999999976422110000


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                         .                       .   ...+...+.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        88 ---~-----------------------~---~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe  138 (262)
T 3r9q_A           88 ---H-----------------------G---PGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFC  138 (262)
T ss_dssp             ---T-----------------------S---SCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTH
T ss_pred             ---h-----------------------h---hhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecch
Confidence               0                       0   0012224568999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                   
T Consensus       139 ~~~Gl~p~~g~~~~L~r~vG~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~-------------------  197 (262)
T 3r9q_A          139 RRWGVPLIDGGTIRLPRLIGHS-RAMDLILTGRPVH-ANEALDIGLVNRVVARGQAREAAE-------------------  197 (262)
T ss_dssp             HHHTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECTTCHHHHHH-------------------
T ss_pred             hccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHcCCccEecChhHHHHHHH-------------------
Confidence            9999999999999999999998 9999999999999 999999999999999999875322                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++|+    +|+++||.+++.+|++++...  
T Consensus       198 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~~~~~~--  222 (262)
T 3r9q_A          198 -------------------------------------------------TLAA----EIAAFPQQCVRADRDSAIAQW--  222 (262)
T ss_dssp             -------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHHTT--
T ss_pred             -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh--
Confidence                                                             3444    799999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                             ..+++++++.|.+ +..++.+ |++||++||+ +| ++|.|++
T Consensus       223 -------~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~-ek-r~p~~~~  261 (262)
T 3r9q_A          223 -------GMAEEAALDNEFG-SIERVAT-EALEGAGRFA-AG-EGRHGAG  261 (262)
T ss_dssp             -------TSCHHHHHHHHHT-HHHHHHC----------------------
T ss_pred             -------cCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHH-cC-CCCCCCC
Confidence                   5689999999999 8888888 9999999999 77 8999985

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1e-54  Score=425.81  Aligned_cols=254  Identities=19%  Similarity=0.290  Sum_probs=216.3

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      ..++.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus        12 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   89 (265)
T 3qxi_A           12 DTEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLKAFARGENVVV   89 (265)
T ss_dssp             ---CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCCCSBC-------CCCEE
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeeCCCChhhhhccchhhh
Confidence            3567788987 799999999999999999999999999999999999999999999998 79999999999864211000


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                      ..                   .      .+     . +..+.. ||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        90 ~~-------------------~------~~-----~-~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  137 (265)
T 3qxi_A           90 EG-------------------R------GL-----G-FTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGI  137 (265)
T ss_dssp             TT-------------------T------EE-----T-TTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred             hh-------------------h------hh-----h-HHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEEC
Confidence            00                   0      00     0 122334 999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                 
T Consensus       138 pe~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-----------------  198 (265)
T 3qxi_A          138 PEVKRGLVAGGGGLLRLPERIPYA-IAMELALTGDNLS-AERAHALGMVNVLAEPGAALDAAI-----------------  198 (265)
T ss_dssp             GGGGGTCCCCSSHHHHHHHHSCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECTTCHHHHHH-----------------
T ss_pred             cccccCcCCcccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHCCCccEeeChhHHHHHHH-----------------
Confidence            999999999999999999999998 9999999999999 999999999999999998874322                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         +||+    +|+++||.+++.+|++++...
T Consensus       199 ---------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~  223 (265)
T 3qxi_A          199 ---------------------------------------------------ALAE----KITANGPLAVAATKRIITESR  223 (265)
T ss_dssp             ---------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHT
T ss_pred             ---------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhh
Confidence                                                               4444    799999999999999999876


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                               ..+++++++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       224 ---------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~g~  265 (265)
T 3qxi_A          224 ---------GWSLDTRFAQQMKILFPIFTSNDAKEGAIAFA-EK-RPPRWTGT  265 (265)
T ss_dssp             ---------TCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             ---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCCC
Confidence                     56899999999999999999999999999999 77 89999874

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=5e-55  Score=432.40  Aligned_cols=262  Identities=16%  Similarity=0.119  Sum_probs=224.5

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhh--
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK--  140 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~--  140 (461)
                      ..++.|.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++......  
T Consensus         6 ~~~~~i~~~~-~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~   83 (287)
T 3gkb_A            6 DAYSTLRVSS-EHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQE   83 (287)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHH
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccch
Confidence            3577899987 7999999999999 79999999999999999999999999999999987899999999987532110  


Q ss_pred             --cCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcC-C
Q 012534          141 --DRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-K  217 (461)
Q Consensus       141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e-~  217 (461)
                        ....                          .++..++.++.+|.++||||||+|||+|+|||++|+++|||||+++ +
T Consensus        84 ~~~~~~--------------------------~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~  137 (287)
T 3gkb_A           84 LAASAP--------------------------ADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAET  137 (287)
T ss_dssp             HHHTSC--------------------------TTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTT
T ss_pred             hhHHHH--------------------------HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCC
Confidence              0000                          0122234577789999999999999999999999999999999999 9


Q ss_pred             ceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChH
Q 012534          218 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH  297 (461)
Q Consensus       218 a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~  297 (461)
                      ++|++||+++|++|++|++++|++++|.. +|++|++||+.|+ |+||+++||||+|||++++.+.+.            
T Consensus       138 a~f~~pe~~lGl~p~~g~~~~L~r~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~------------  203 (287)
T 3gkb_A          138 AGLGQIEALMGIIPGGGGTQYLRGRVGRN-RALEVVLTADLFD-AETAASYGWINRALPADELDEYVD------------  203 (287)
T ss_dssp             CEEECGGGGGTSCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECHHHHHHHHH------------
T ss_pred             cEEECcccccCCCCCchHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCCcEEeChhHHHHHHH------------
Confidence            99999999999999999999999999998 9999999999999 999999999999999877653222            


Q ss_pred             HHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHH
Q 012534          298 QDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKY  377 (461)
Q Consensus       298 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~  377 (461)
                                                                              ++|    ++|+++||.+++.+|++
T Consensus       204 --------------------------------------------------------~lA----~~la~~~p~a~~~~K~~  223 (287)
T 3gkb_A          204 --------------------------------------------------------RVA----RNIAALPDGVIEAAKRS  223 (287)
T ss_dssp             --------------------------------------------------------HHH----HHHHTSCTTHHHHHHHH
T ss_pred             --------------------------------------------------------HHH----HHHHcCCHHHHHHHHHH
Confidence                                                                    344    37999999999999999


Q ss_pred             HHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccC
Q 012534          378 FSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEE  439 (461)
Q Consensus       378 l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~  439 (461)
                      ++..            .+.++++.|...+..++.++|++||+++|++.+++.|+|+. ++.+
T Consensus       224 l~~~------------~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~~~P~f~~-~l~~  272 (287)
T 3gkb_A          224 LPAD------------DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGAQTPAGER-DLEG  272 (287)
T ss_dssp             SCCC------------CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTTTSHHHHH-THHH
T ss_pred             HHcc------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCchhh-hHHH
Confidence            9862            24589999999999999999999999999954334599994 4543

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.9e-54  Score=422.89  Aligned_cols=256  Identities=24%  Similarity=0.315  Sum_probs=223.0

Q ss_pred             ccceEEEE--ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           65 EEFVKGNV--HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        65 ~~~i~~~~--~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      |+.+.++.  ..++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......  
T Consensus         3 ~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--   79 (260)
T 1mj3_A            3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNRTFQ--   79 (260)
T ss_dssp             CSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTCCHH--
T ss_pred             cccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCccCCcChHhhhcccch--
Confidence            55666664  2578999999999999999999999999999999999999999999998 899999999986421000  


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                                 ..+...+...+.++.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        80 ---------------------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  132 (260)
T 1mj3_A           80 ---------------------------DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQ  132 (260)
T ss_dssp             ---------------------------HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred             ---------------------------HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeC
Confidence                                       00111112234578899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                 
T Consensus       133 pe~~~Gl~p~~g~~~~l~r~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-----------------  193 (260)
T 1mj3_A          133 PEILLGTIPGAGGTQRLTRAVGKS-LAMEMVLTGDRIS-AQDAKQAGLVSKIFPVETLVEEAI-----------------  193 (260)
T ss_dssp             GGGGGTCCCCSSTTTHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECTTTHHHHHH-----------------
T ss_pred             cccccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHcCCccEEeChHHHHHHHH-----------------
Confidence            999999999999999999999997 9999999999999 999999999999999988864222                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         ++|+    +|+.+||.+++.+|++++...
T Consensus       194 ---------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~  218 (260)
T 1mj3_A          194 ---------------------------------------------------QCAE----KIANNSKIIVAMAKESVNAAF  218 (260)
T ss_dssp             ---------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHGGG
T ss_pred             ---------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh
Confidence                                                               3444    799999999999999999876


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                               ..++.++++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus       219 ---------~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~-~k-r~p~~~g~  260 (260)
T 1mj3_A          219 ---------EMTLTEGNKLEKKLFYSTFATDDRREGMSAFV-EK-RKANFKDH  260 (260)
T ss_dssp             ---------SSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             ---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCCC
Confidence                     56899999999999999999999999999999 77 89999863

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.7e-53  Score=417.72  Aligned_cols=257  Identities=23%  Similarity=0.321  Sum_probs=219.3

Q ss_pred             cceEEE----EecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           66 EFVKGN----VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        66 ~~i~~~----~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      +.+.++    . +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus         7 ~~v~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   84 (267)
T 3oc7_A            7 ALVDYAGPAAT-GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEAGSGGSPS   84 (267)
T ss_dssp             SSEEEECHHHH-SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SEEECCBC-----------
T ss_pred             cccCCCCccce-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CceeCCcCchhhhhccCch
Confidence            456666    4 789999999999999999999999999999999999999999999998 7999999999976211000


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                                            ........+....+.++.++.++||||||+|||+|+|||++|+++|||||++++++|+
T Consensus        85 ----------------------~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~  142 (267)
T 3oc7_A           85 ----------------------SAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFA  142 (267)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEE
T ss_pred             ----------------------hhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEe
Confidence                                  0001122355666778889999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|+ ++|.. ++++|++||+.|+ |+||+++||||++  ++++.+.+.                
T Consensus       143 ~pe~~~Gl~p~~g~~~~l~-~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~v--~~~l~~~a~----------------  201 (267)
T 3oc7_A          143 LTEARIGVAPAIISLTLLP-KLSAR-AAARYYLTGEKFD-ARRAEEIGLITMA--AEDLDAAID----------------  201 (267)
T ss_dssp             CCGGGGTCCCTTTHHHHTT-TSCHH-HHHHHHHHCCCBC-HHHHHHHTSSSEE--CSSHHHHHH----------------
T ss_pred             CcccccCCCcchhHHHHHH-HhCHH-HHHHHHHcCCccC-HHHHHHCCChhhh--hHHHHHHHH----------------
Confidence            9999999999999999999 89998 9999999999999 9999999999999  677764222                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          ++|+    +|+++||.+++.+|++++..
T Consensus       202 ----------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~  225 (267)
T 3oc7_A          202 ----------------------------------------------------QLVT----DVGRGSPQGLAASKALTTAA  225 (267)
T ss_dssp             ----------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHh
Confidence                                                                3444    79999999999999999987


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      .         ..+++++++.|...+..++.++|++||+++|+ +| |+|+|+.
T Consensus       226 ~---------~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~~  267 (267)
T 3oc7_A          226 V---------LERFDRDAERLAEESARLFVSDEAREGMLAFL-EK-RSPNWTS  267 (267)
T ss_dssp             H---------HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-HT-CCCTTC-
T ss_pred             h---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCC
Confidence            6         45799999999999999999999999999999 67 8999973

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.3e-53  Score=417.77  Aligned_cols=256  Identities=18%  Similarity=0.209  Sum_probs=224.8

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.+.++.++++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++ +.......   
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~~~~~~---   82 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFG-LIEEMRAS---   82 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHH-HHHHHHHC---
T ss_pred             CCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCCcccCccc-cccccccc---
Confidence            4567777535899999999999 9999999999999999999999999999999998 8999999999 75421100   


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                           ......++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        83 ---------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe  141 (264)
T 1wz8_A           83 ---------------------HEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGH  141 (264)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCH
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCch
Confidence                                 00011244455678889999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                   
T Consensus       142 ~~~Gl~p~~g~~~~l~r~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-------------------  200 (264)
T 1wz8_A          142 LRLGVAAGDHAVLLWPLLVGMA-KAKYHLLLNEPLT-GEEAERLGLVALAVEDEKVYEKAL-------------------  200 (264)
T ss_dssp             HHHTSCCTTTHHHHTHHHHCHH-HHHHHHHHTCCEE-HHHHHHHTSSSEEECGGGHHHHHH-------------------
T ss_pred             hhcCcCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCceeecChhHHHHHHH-------------------
Confidence            9999999999999999999997 9999999999999 999999999999999888764322                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++|+    +|+++||.+++.+|++++...  
T Consensus       201 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  225 (264)
T 1wz8_A          201 -------------------------------------------------EVAE----RLAQGPKEALHHTKHALNHWY--  225 (264)
T ss_dssp             -------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHH--
T ss_pred             -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHH--
Confidence                                                             4444    799999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN  433 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~  433 (461)
                             .. +++.++.|...+..++.++|++||+++|+ +| |+|+|+
T Consensus       226 -------~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~f~  264 (264)
T 1wz8_A          226 -------RS-FLPHFELSLALEFLGFSGKELEEGLKALK-EK-RPPEFP  264 (264)
T ss_dssp             -------HT-THHHHHHHHHHHHHGGGSHHHHHHHHHHH-TT-SCCCCC
T ss_pred             -------HH-HHHHHHHHHHHHHHHhcChHHHHHHHHHH-cc-CCCCCC
Confidence                   45 88999999999999999999999999999 77 899995

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2e-53  Score=414.05  Aligned_cols=252  Identities=25%  Similarity=0.356  Sum_probs=221.3

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      |.++  +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........     
T Consensus         2 i~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~-----   73 (253)
T 1uiy_A            2 VQVE--KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTELGA-----   73 (253)
T ss_dssp             EEEE--CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTTSCH-----
T ss_pred             EEEE--eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcChHHHHhcccCCc-----
Confidence            4455  588999999999999999999999999999999999999999999998 89999999999864210000     


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                        .... ......+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus        74 ------------------~~~~-~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~  134 (253)
T 1uiy_A           74 ------------------EENY-RHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKI  134 (253)
T ss_dssp             ------------------HHHH-HHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHH
T ss_pred             ------------------hhHH-HHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCccccc
Confidence                              0000 111114667888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|++| +++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                      
T Consensus       135 Gl~p~~g-~~~l~r~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~----------------------  189 (253)
T 1uiy_A          135 GFVAALV-SVILVRAVGEK-AAKDLLLTGRLVE-AREAKALGLVNRIAPPGKALEEAK----------------------  189 (253)
T ss_dssp             TCCCHHH-HHHHHHHSCHH-HHHHHHHHCCEEE-HHHHHHHTSCSEEECTTCHHHHHH----------------------
T ss_pred             CcCCchH-HHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHCCCcceecChhHHHHHHH----------------------
Confidence            9999999 99999999997 9999999999999 999999999999999988875322                      


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                    +||+    +|+++||.+++.+|++++...     
T Consensus       190 ----------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-----  214 (253)
T 1uiy_A          190 ----------------------------------------------ALAE----EVAKNAPTSLRLTKELLLALP-----  214 (253)
T ss_dssp             ----------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHHGG-----
T ss_pred             ----------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhh-----
Confidence                                                          4444    788999999999999999876     


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW  432 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w  432 (461)
                          ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|
T Consensus       215 ----~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~-~k-r~p~~  253 (253)
T 1uiy_A          215 ----GMGLEDGFRLAALANAWVRETGDLAEGIRAFF-EK-RPPRF  253 (253)
T ss_dssp             ----GSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHH-TT-SCCCC
T ss_pred             ----cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-Cc-CCCCC
Confidence                56899999999999999999999999999999 67 89998

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=3.3e-54  Score=420.24  Aligned_cols=251  Identities=24%  Similarity=0.274  Sum_probs=187.6

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .+..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.........
T Consensus         4 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   81 (256)
T 3qmj_A            4 SMVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLAEMQARITDPNF   81 (256)
T ss_dssp             --CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCHHHHHHHHHSSSC
T ss_pred             CcceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhcccchhH
Confidence            456688887 799999999999999999999999999999999999999999999998 899999999998764332210


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                      ..                          +....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        82 ~~--------------------------~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~p  135 (256)
T 3qmj_A           82 SE--------------------------GKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCP  135 (256)
T ss_dssp             CC--------------------------CSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECC
T ss_pred             HH--------------------------HHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECc
Confidence            10                          1222356778899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                  
T Consensus       136 e~~~Gl~p~~g~~~~l~r~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~------------------  195 (256)
T 3qmj_A          136 FTSLGVAPEAASSYLLPQLVGRQ-NAAWLLMSSEWID-AEEALRMGLVWRICSPEELLPEAR------------------  195 (256)
T ss_dssp             GGGC---CCTTHHHHHHHHHHHH-HHHHHHHSCCCEE-HHHHHHHTSSSEEECGGGHHHHHH------------------
T ss_pred             ccccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCccEEeCHhHHHHHHH------------------
Confidence            99999999999999999999997 9999999999999 999999999999999888764322                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        +||+    +|+++||.+++.+|++++... 
T Consensus       196 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-  220 (256)
T 3qmj_A          196 --------------------------------------------------RHAE----ILAAKPISSLMAVKHTMVEPN-  220 (256)
T ss_dssp             --------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHCC--
T ss_pred             --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh-
Confidence                                                              4444    799999999999999999865 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                              ..+++++++.|...+..++.++|++||+++|+ +|
T Consensus       221 --------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek  254 (256)
T 3qmj_A          221 --------RAQIAAASARENAHFAELMGAQANAAALADFT-DR  254 (256)
T ss_dssp             -------------------------------------------
T ss_pred             --------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cc
Confidence                    45899999999999999999999999999999 66

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=6.1e-54  Score=419.47  Aligned_cols=258  Identities=19%  Similarity=0.226  Sum_probs=223.9

Q ss_pred             CccceEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           64 AEEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLn-rP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      .++.|.++. +++|++|||| ||+++|+||.+|+.+|.++++.++.|+. |+|||||.| ++||+|+|++++........
T Consensus         3 ~~~~i~~~~-~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~g-~~F~aG~Dl~~~~~~~~~~~   79 (261)
T 2gtr_A            3 RYRDIVVRK-QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVG-SVFCCGLDFIYFIRRLTDDR   79 (261)
T ss_dssp             CCSSEEEEE-ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEESS-SCSBCEECHHHHHHHHHHCH
T ss_pred             ccceEEEEE-eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecCC-CccccccCchhhhhccccch
Confidence            356688887 7899999999 6999999999999999999999999874 999999998 89999999999864221110


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                             ......+....+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        80 -----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  136 (261)
T 2gtr_A           80 -----------------------KRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQT  136 (261)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEEC
T ss_pred             -----------------------hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeC
Confidence                                   001122334456677889999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                 
T Consensus       137 pe~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-----------------  197 (261)
T 2gtr_A          137 PYTTFGQSPDGCSTVMFPKIMGGA-SANEMLLSGRKLT-AQEACGKGLVSQVFWPGTFTQEVM-----------------  197 (261)
T ss_dssp             CTTTTTCCCCTTHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECGGGHHHHHH-----------------
T ss_pred             chhccCCCccchHHHHHHHHcCHH-HHHHHHHcCCCCC-HHHHHHCCCcccccChhHHHHHHH-----------------
Confidence            999999999999999999999997 9999999999999 999999999999999888764222                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         ++|+    +|+++||.+++.+|++++...
T Consensus       198 ---------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~  222 (261)
T 2gtr_A          198 ---------------------------------------------------VRIK----ELASCNPVVLEESKALVRCNM  222 (261)
T ss_dssp             ---------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHTTT
T ss_pred             ---------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhcc
Confidence                                                               4444    789999999999999999765


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW  432 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w  432 (461)
                               ..++++.++.|...+..++.++|++||+++|+ +| |+|+|
T Consensus       223 ---------~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~P~f  261 (261)
T 2gtr_A          223 ---------KMELEQANERECEVLKKIWGSAQGMDSMLKYL-QR-KIDEF  261 (261)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHH-HH-HHHC-
T ss_pred             ---------ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cc-CCCCC
Confidence                     34689999999999999999999999999999 67 89998

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1.1e-53  Score=420.11  Aligned_cols=258  Identities=19%  Similarity=0.212  Sum_probs=220.6

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCC-ccccCCChhhHHHHhhhcC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR-AFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~-~FcaG~Dl~~~~~~~~~~~  142 (461)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| + +||+|+|++++.... ...
T Consensus        11 ~~~~i~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~~FcaG~Dl~~~~~~~-~~~   87 (273)
T 2uzf_A           11 EYDEIKYEF-YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEG-DLAFCSGGDQKKRGHGG-YVG   87 (273)
T ss_dssp             CCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SEEEECCCCCC---------C
T ss_pred             CCceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCC-CCceecCcCcHhhhccc-cch
Confidence            356688887 689999999999999999999999999999999999999999999998 6 999999999875411 000


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                       .....                        ....+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus        88 -~~~~~------------------------~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~  142 (273)
T 2uzf_A           88 -EDQIP------------------------RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQ  142 (273)
T ss_dssp             -CSSSC------------------------CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred             -hhhHH------------------------HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEEC
Confidence             00000                        00023456678899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                 
T Consensus       143 pe~~~Gl~p~~g~~~~l~~~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-----------------  203 (273)
T 2uzf_A          143 TGPKVGSFDAGYGSGYLARIVGHK-KAREIWYLCRQYN-AQEALDMGLVNTVVPLEKVEDETV-----------------  203 (273)
T ss_dssp             CGGGTTCCCCSTTTHHHHHHHCHH-HHHHHHHTCCCEE-HHHHHHHTSSSEEECGGGSHHHHH-----------------
T ss_pred             chhhhCCCCchhHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHcCCCccccCHHHHHHHHH-----------------
Confidence            999999999999999999999998 9999999999999 999999999999999888764222                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         +||+    +|+++||.+++.+|++++.. 
T Consensus       204 ---------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~-  227 (273)
T 2uzf_A          204 ---------------------------------------------------QWCK----EIMKHSPTALRFLKAAMNAD-  227 (273)
T ss_dssp             ---------------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHHH-
T ss_pred             ---------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHcc-
Confidence                                                               4444    79999999999999999942 


Q ss_pred             hhcCCCccccCCHHHHHHHHH-HHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEY-RVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~-~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                                .++.++++.|. ..+..++.++|++||+++|+ +| |+|+|+++.
T Consensus       228 ----------~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~-ek-r~p~f~~~~  270 (273)
T 2uzf_A          228 ----------TDGLAGLQQMAGDATLLYYTTDEAKEGRDAFK-EK-RDPDFDQFP  270 (273)
T ss_dssp             ----------HSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCSSSC
T ss_pred             ----------CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHH-hc-CCCCCCCCC
Confidence                      36889999999 88888999999999999999 67 899999863

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=2.8e-54  Score=434.71  Aligned_cols=271  Identities=18%  Similarity=0.211  Sum_probs=190.0

Q ss_pred             CccceEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCC------ccccCCChhhHHH
Q 012534           64 AEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR------AFCAGMDIKGVVA  136 (461)
Q Consensus        64 ~~~~i~~~~~-~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~------~FcaG~Dl~~~~~  136 (461)
                      .++.|++++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||.|++      +||+|+|++++..
T Consensus        53 ~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~  132 (334)
T 3t8b_A           53 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR  132 (334)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-
T ss_pred             CCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhc
Confidence            4778999873 48999999999999999999999999999999999999999999999854      9999999998643


Q ss_pred             HhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEc-
Q 012534          137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-  215 (461)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~-  215 (461)
                      ..........                ................++..|.++||||||+|||+|+|||++|+++||||||+ 
T Consensus       133 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~  196 (334)
T 3t8b_A          133 SGYQYASGDT----------------ADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASR  196 (334)
T ss_dssp             -------------------------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEET
T ss_pred             cccccccccc----------------chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeC
Confidence            1100000000                00000000112223457778999999999999999999999999999999999 


Q ss_pred             CCceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCC
Q 012534          216 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSED  295 (461)
Q Consensus       216 e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~  295 (461)
                      ++++|++||+++|++|++|++++|++++|.. +|++|++||+.|+ |+||+++||||+|||++++.+.+.          
T Consensus       197 ~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~----------  264 (334)
T 3t8b_A          197 EYARFKQTDADVGSFDGGYGSAYLARQVGQK-FAREIFFLGRTYT-AEQMHQMGAVNAVAEHAELETVGL----------  264 (334)
T ss_dssp             TTCEEECCCTTCSSSSCCSCHHHHHHHHHHH-HHHHHHHHCCEEE-HHHHHHHTSCSEEECGGGHHHHHH----------
T ss_pred             CCcEEECcccccCCCCcccHHHHHHHHhhHH-HHHHHHHhCCcCC-HHHHHHCCCCcEecCHHHHHHHHH----------
Confidence            9999999999999999999999999999998 9999999999999 999999999999999988764322          


Q ss_pred             hHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHH
Q 012534          296 PHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQ  375 (461)
Q Consensus       296 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk  375 (461)
                                                                                +||+    +|+++||.+++.+|
T Consensus       265 ----------------------------------------------------------~~A~----~ia~~~p~a~~~~K  282 (334)
T 3t8b_A          265 ----------------------------------------------------------QWAA----EINAKSPQAQRMLK  282 (334)
T ss_dssp             ----------------------------------------------------------HHHH----HHHTSCHHHHHHHH
T ss_pred             ----------------------------------------------------------HHHH----HHHhCCHHHHHHHH
Confidence                                                                      4454    79999999999999


Q ss_pred             HHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          376 KYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       376 ~~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                      ++++...          ..+.+.+..|.+.+..++.++|++||++||+ +| |+|+|++..
T Consensus       283 ~~l~~~~----------~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFl-eK-R~P~f~~~~  331 (334)
T 3t8b_A          283 FAFNLLD----------DGLVGQQLFAGEATRLAYMTDEAVEGRDAFL-QK-RPPDWSPFP  331 (334)
T ss_dssp             HHHHHTC----------CCC-----------------------------------------
T ss_pred             HHHHhhh----------cchHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCCCC
Confidence            9999764          2345556677777788899999999999999 77 899998753

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=1e-52  Score=413.72  Aligned_cols=248  Identities=19%  Similarity=0.256  Sum_probs=222.1

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......     
T Consensus        28 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-----  100 (276)
T 3rrv_A           28 TEIDVRA-DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFGYLKELSAD-----  100 (276)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHHC-----
T ss_pred             CeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CcccCCcCHHHHhhcccc-----
Confidence            4688877 799999999999999999999999999999999999999999999998 899999999998753211     


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                          ......++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus       101 --------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~  160 (276)
T 3rrv_A          101 --------------------ADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHV  160 (276)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHH
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchh
Confidence                                011223555667788899999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++|  +++.+.+.                    
T Consensus       161 ~~Gl~p~~g~~~~L~r~vG~~-~A~ellltG~~i~-A~eA~~~GLv~~vv--~~l~~~a~--------------------  216 (276)
T 3rrv_A          161 QVGLVAADGGPLTWPLHISLL-LAKEYALTGTRIS-AQRAVELGLANHVA--DDPVAEAI--------------------  216 (276)
T ss_dssp             HHTCCCCSSHHHHGGGTSCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEE--SSHHHHHH--------------------
T ss_pred             ccCcCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCHHHHH--HHHHHHHH--------------------
Confidence            999999999999999999998 9999999999999 99999999999999  77764222                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      +||+    +|+++||.+++.+|++++...   
T Consensus       217 ------------------------------------------------~~A~----~la~~~~~a~~~~K~~l~~~~---  241 (276)
T 3rrv_A          217 ------------------------------------------------ACAK----KILELPQQAVESTKRVLNIHL---  241 (276)
T ss_dssp             ------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHHHH---
T ss_pred             ------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh---
Confidence                                                            4444    799999999999999999876   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                            ..++.++++.|...+..++.++|++||+++|+ +|
T Consensus       242 ------~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~-ek  275 (276)
T 3rrv_A          242 ------ERAVLASLDYALSAESQSFVTEDFRSIVTKLA-DK  275 (276)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH-CC
T ss_pred             ------hcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC
Confidence                  45689999999999999999999999999999 66

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8e-54  Score=418.65  Aligned_cols=248  Identities=19%  Similarity=0.304  Sum_probs=212.9

Q ss_pred             cCCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           62 AGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        62 ~~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      ..+++.|.++. +++|++||||||+++|+||.+|+.+|.++++.+++| ++|+|||||.| ++||+|+|++....    .
T Consensus        17 ~~~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G-~~FcaG~Dl~~~~~----~   89 (264)
T 3he2_A           17 QGPGSMIGITQ-AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQG-TAFCAGADLSGDAF----A   89 (264)
T ss_dssp             -----CEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESS-SCSBCCBCCTTCTT----G
T ss_pred             CCCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCC-CCccCCcCCccchh----h
Confidence            35677899987 799999999999999999999999999999999988 99999999998 89999999982100    0


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                                                  ..+....+.++.+|.++||||||+|||+|+|||++|+++||+||++++++|+
T Consensus        90 ----------------------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~  141 (264)
T 3he2_A           90 ----------------------------ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQ  141 (264)
T ss_dssp             ----------------------------GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEE
T ss_pred             ----------------------------HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEE
Confidence                                        0134445677888999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|++   +.   ++               
T Consensus       142 ~pe~~~Gl~p~~g~~~~L~r~vG~~-~A~~llltG~~i~-A~eA~~~GLV~~v~~---~~---~a---------------  198 (264)
T 3he2_A          142 FPTSKYGLALDNWSIRRLSSLVGHG-RARAMLLSAEKLT-AEIALHTGMANRIGT---LA---DA---------------  198 (264)
T ss_dssp             CTHHHHTCCCCHHHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEECC---HH---HH---------------
T ss_pred             CcccccCcCCcchHHHHHHHHhCHH-HHHHHHHcCCCcc-HHHHHHCCCeEEEec---HH---HH---------------
Confidence            9999999999999999999999998 9999999999999 999999999999985   21   11               


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                         .+||+    +|+++||.+++.+|++++..
T Consensus       199 ---------------------------------------------------~~~A~----~la~~~p~a~~~~K~~l~~~  223 (264)
T 3he2_A          199 ---------------------------------------------------QAWAA----EIARLAPLAIQHAKRVLNDD  223 (264)
T ss_dssp             ---------------------------------------------------HHHHH----HHHTSCHHHHHHHHHHHHTS
T ss_pred             ---------------------------------------------------HHHHH----HHHcCCHHHHHHHHHHHHcc
Confidence                                                               25555    79999999999999999974


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                      .           ++++.++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus       224 ~-----------~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~-ek-R~P~f~g~  264 (264)
T 3he2_A          224 G-----------AIEEAWPAHKELFDKAWGSQDVIEAQVARM-EK-RPPKFQGA  264 (264)
T ss_dssp             S-----------CSCCCCHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             C-----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-cC-CCCCCCCC
Confidence            2           345567788888999999999999999999 78 89999864

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.2e-52  Score=414.19  Aligned_cols=256  Identities=18%  Similarity=0.235  Sum_probs=210.4

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++ +|||||.| ++||+|+|++++......   
T Consensus        24 ~~~~i~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g-~~FcaG~Dl~~~~~~~~~---   97 (280)
T 2f6q_A           24 GFETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPPG---   97 (280)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCTT---
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCC-CCcccCCCHHHHhhcCcc---
Confidence            466788887 789999999999999999999999999999999999999 99999998 899999999987521000   


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                          ........+......++.+|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        98 --------------------~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~p  157 (280)
T 2f6q_A           98 --------------------GVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTP  157 (280)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECC
T ss_pred             --------------------hhhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECc
Confidence                                000001112333456778899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                  
T Consensus       158 e~~~Gl~p~~g~~~~L~r~vG~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~------------------  217 (280)
T 2f6q_A          158 FSHLGQSPEGCSSYTFPKIMSPA-KATEMLIFGKKLT-AGEACAQGLVTEVFPDSTFQKEVW------------------  217 (280)
T ss_dssp             TGGGTCCCCTTHHHHHHHHHCHH-HHHHHHTTCCCEE-HHHHHHTTSCSEEECTTTHHHHHH------------------
T ss_pred             hHhhCCCCcccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCcceEECHHHHHHHHH------------------
Confidence            99999999999999999999997 9999999999999 999999999999999988864322                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|+.+||.+++.+|++++... 
T Consensus       218 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-  242 (280)
T 2f6q_A          218 --------------------------------------------------TRLK----AFAKLPPNALRISKEVIRKRE-  242 (280)
T ss_dssp             --------------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHGGG-
T ss_pred             --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh-
Confidence                                                              4444    799999999999999999865 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNP  430 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P  430 (461)
                              ..+++++++.|.+.+..++.++|++||+++|+ +| |+|
T Consensus       243 --------~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek-R~p  279 (280)
T 2f6q_A          243 --------REKLHAVNAEECNVLQGRWLSDECTNAVVNFL-SR-KSK  279 (280)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHTSHHHHC-------------
T ss_pred             --------hcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cc-CCC
Confidence                    34689999999999999999999999999999 67 676

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=9e-54  Score=417.59  Aligned_cols=249  Identities=18%  Similarity=0.169  Sum_probs=189.6

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      +.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| +.||+|+|++++........
T Consensus         9 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   86 (258)
T 3lao_A            9 SGPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHG-EHFTAGLDLMELAPKLAASG   86 (258)
T ss_dssp             CSSCCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHGGGCBTTB
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCeecCcCHHHHhhccchhh
Confidence            3567788887 799999999999999999999999999999999999999999999998 68999999999865322110


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHH-hhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKI-SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                      . .                          +....+.++.++ .++||||||+|||+|+|||++|+++|||||++++++|+
T Consensus        87 ~-~--------------------------~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~  139 (258)
T 3lao_A           87 F-R--------------------------YPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFA  139 (258)
T ss_dssp             C-C--------------------------CCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEE
T ss_pred             H-H--------------------------HHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEe
Confidence            0 0                          001111234567 89999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                
T Consensus       140 ~pe~~~Gl~p~~g~~~~L~r~vG~~-~A~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~----------------  201 (258)
T 3lao_A          140 HLEVLRGIPPLGGSTVRFPRAAGWT-DAMRYILTGDEFD-ADEALRMRLLTEVVEPGEELARAL----------------  201 (258)
T ss_dssp             CGGGGTCCCSSCCCCSHHHHHHCHH-HHHHHHTTCCCEE-HHHHHHTTSCSEEECTTCHHHHHH----------------
T ss_pred             CcccccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCCcEeeChhHHHHHHH----------------
Confidence            9999999999999999999999998 9999999999999 999999999999999998864322                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          ++|+    +|+++||.+++.+|++++..
T Consensus       202 ----------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~  225 (258)
T 3lao_A          202 ----------------------------------------------------EYAE----RIARAAPLAVRAALQSAFQG  225 (258)
T ss_dssp             ----------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHh
Confidence                                                                3444    79999999999999999987


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhh
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL  423 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl  423 (461)
                      .         ..+++++++.|.+.+..++.++|++||+++|+
T Consensus       226 ~---------~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          226 R---------DEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             T---------C-------------------------------
T ss_pred             h---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence            6         56899999999999999999999999999996

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=2.4e-53  Score=413.83  Aligned_cols=247  Identities=22%  Similarity=0.328  Sum_probs=198.7

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....     
T Consensus         7 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g-~~F~aG~Dl~~~~~~~-----   79 (256)
T 3pe8_A            7 DSPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGAD-PVFCAGLDLKELGDTT-----   79 (256)
T ss_dssp             -CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEEST-TCSBCCBCTTTC---------
T ss_pred             CCCcEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhhhH-----
Confidence            356788887 799999999999999999999999999999999999999999999998 8999999999876420     


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                                  .+   ..+...+.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        80 ----------------------------~~---~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~p  128 (256)
T 3pe8_A           80 ----------------------------EL---PDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADT  128 (256)
T ss_dssp             ------------------------------------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECC
T ss_pred             ----------------------------HH---HHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECc
Confidence                                        00   11235678999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                  
T Consensus       129 e~~~Gl~p~~g~~~~L~r~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~------------------  188 (256)
T 3pe8_A          129 HARVGLMPTWGLSVRLPQKVGVG-LARRMSLTGDYLS-AQDALRAGLVTEVVAHDDLLTAAR------------------  188 (256)
T ss_dssp             HHHHTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSCEECGGGHHHHHH------------------
T ss_pred             hhhhCCCCcccHHHHHHHhcCHH-HHHHHHHcCCCCC-HHHHHHCCCCeEEeCHhHHHHHHH------------------
Confidence            99999999999999999999998 9999999999999 999999999999999988764322                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|+++||.+++.+|++++... 
T Consensus       189 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~~~~~~-  213 (256)
T 3pe8_A          189 --------------------------------------------------RVAA----SIVGNNQKAVRALLDSYHRID-  213 (256)
T ss_dssp             --------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHH-
T ss_pred             --------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhh-
Confidence                                                              3444    799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHh---hcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALR---SSLRSDFAEGVRAVLVDKDQNPKWN  433 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~---~~~s~d~~egv~afl~~K~r~P~w~  433 (461)
                              ..+++++++.|.+.+..   ...++|++|++++|+ +| ++|.|+
T Consensus       214 --------~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~afl-ek-~k~~~~  256 (256)
T 3pe8_A          214 --------ALQTGGALWAEAEAARQWMRSTSGDDIAASRASVI-ER-GRSQVR  256 (256)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHC-----------------------
T ss_pred             --------cCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH-hc-cCccCC
Confidence                    45799999999998654   477889999999999 67 899995

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=5e-52  Score=408.77  Aligned_cols=250  Identities=19%  Similarity=0.210  Sum_probs=212.8

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.|.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....      
T Consensus        24 ~~v~~~~-~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~------   94 (277)
T 4di1_A           24 EFVSVVA-DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGH-EIFSAGDDMPELRTLNA------   94 (277)
T ss_dssp             CSEEEEE-ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SCSBCCBCHHHHHTCCH------
T ss_pred             ceEEEEE-ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCEecCcCcccccccCh------
Confidence            5688887 79999999999999 999999999999999999999999999999997 89999999999864210      


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                           .....+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        95 ---------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~  153 (277)
T 4di1_A           95 ---------------------PEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEI  153 (277)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGG
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECccc
Confidence                                 11223455566788899999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                    
T Consensus       154 ~lGl~p~~g~~~~L~r~vG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~--------------------  211 (277)
T 4di1_A          154 LAGLIPGGGGMGRLTRVVGSS-RAKELVFSGRFFD-AEEALALGLIDDMVAPDDVYDSAV--------------------  211 (277)
T ss_dssp             GGTCCCCTTHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHH--------------------
T ss_pred             ccCCCCCchHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCccEEeChhHHHHHHH--------------------
Confidence            999999999999999999998 9999999999999 999999999999999888764332                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      ++|+    +|+++||.+++.+|++++...   
T Consensus       212 ------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---  236 (277)
T 4di1_A          212 ------------------------------------------------AWAR----RYLECPPRALAAAKAVINDVF---  236 (277)
T ss_dssp             ------------------------------------------------HHHH----TTTTSCHHHHHHHHHHHHHTT---
T ss_pred             ------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhh---
Confidence                                                            3444    799999999999999999876   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCC--CCCCCccCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPK--WNPASLEEV  440 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~--w~~~~~~~v  440 (461)
                            ..++.++++.|...+..++.++           +| |+|+  |+++.+.|-
T Consensus       237 ------~~~l~~~l~~e~~~~~~~~~s~-----------ek-R~P~~~f~g~~~~~~  275 (277)
T 4di1_A          237 ------ELEATERAAAERRRYVELFAAG-----------QR-GPDGRGPGGGNTGDQ  275 (277)
T ss_dssp             ------TSCHHHHHHHHHHHHHHTTSGG-----------GC----------------
T ss_pred             ------cCCHHHHHHHHHHHHHHHhcCc-----------cc-CCCcCcCCCCCcCCC
Confidence                  5689999999999999999888           67 8999  999987764

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=2.2e-52  Score=405.94  Aligned_cols=246  Identities=22%  Similarity=0.199  Sum_probs=199.6

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-cCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-SGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg-~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+||||| .| ++||+|+|++++.....       
T Consensus         2 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~~~~-------   72 (250)
T 2a7k_A            2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAE-RSFSAGGDFNEVKQLSR-------   72 (250)
T ss_dssp             EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTT-SCSBCBSCHHHHHTC-C-------
T ss_pred             eEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCC-CCccCCcCHHHHhhcCc-------
Confidence            55666 6899999999999999999999999999999999999999999999 76 89999999998753110       


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                                         ......++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus        73 -------------------~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~  133 (250)
T 2a7k_A           73 -------------------SEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELK  133 (250)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGG
T ss_pred             -------------------hhhHHHHHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccc
Confidence                               0001224445567888999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534          227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  306 (461)
Q Consensus       227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~  306 (461)
                      +|++|++|++ +|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                     
T Consensus       134 ~Gl~p~~g~~-~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~---------------------  189 (250)
T 2a7k_A          134 HGIGCSVGAA-ILGFTHGFS-TMQEIIYQCQSLD-APRCVDYRLVNQVVESSALLDAAI---------------------  189 (250)
T ss_dssp             GTCCCHHHHH-HHHHHHCHH-HHHHHHHHCCCBC-HHHHHHHTCCSEEECHHHHHHHHH---------------------
T ss_pred             cCCCCCcHHH-HHHHHhHHH-HHHHHHHcCCccc-HHHHHHcCCcceecCHHHHHHHHH---------------------
Confidence            9999999999 999999997 9999999999999 999999999999999766653221                     


Q ss_pred             hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534          307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG  386 (461)
Q Consensus       307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~  386 (461)
                                                                     ++|+    +|+++||.+++.+|++++...    
T Consensus       190 -----------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~----  214 (250)
T 2a7k_A          190 -----------------------------------------------TQAH----VMASYPASAFINTKRAVNKPF----  214 (250)
T ss_dssp             -----------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHH----
T ss_pred             -----------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh----
Confidence                                                           4444    799999999999999999876    


Q ss_pred             CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                           ..++.++++.|.+.+..++.++|++||+++|+ +|
T Consensus       215 -----~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~-ek  248 (250)
T 2a7k_A          215 -----IHLLEQTRDASKAVHKAAFQARDAQGHFKNVL-GK  248 (250)
T ss_dssp             -----HHHHHHHHHHHHHHCC-------------------
T ss_pred             -----hcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-hc
Confidence                 34789999999999999999999999999999 66

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1.4e-52  Score=415.19  Aligned_cols=252  Identities=16%  Similarity=0.149  Sum_probs=220.6

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      +.++.|.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++........
T Consensus         5 ~~~~~v~~~~-~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~   82 (289)
T 3h0u_A            5 ASYETIKARL-DGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAA   82 (289)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHH
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchh
Confidence            4678899988 7999999999998 7999999999999999999999999999999998666777889999876432211


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEe
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLA  221 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~  221 (461)
                      ...                        ..+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++ ++|+
T Consensus        83 ~~~------------------------~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~  138 (289)
T 3h0u_A           83 KAG------------------------GPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILG  138 (289)
T ss_dssp             TTS------------------------STTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEE
T ss_pred             hhH------------------------HHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEe
Confidence            000                        002223456778899999999999999999999999999999999998 9999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                
T Consensus       139 ~pe~~lGl~p~~g~~~~L~r~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~----------------  200 (289)
T 3h0u_A          139 QPEVGIGAPPGAGAIQHLTRLLGRG-RALEAVLTSSDFD-ADLAERYGWVNRAVPDAELDEFVA----------------  200 (289)
T ss_dssp             CTHHHHTSCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECHHHHHHHHH----------------
T ss_pred             CchhhcCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCccEecCHHHHHHHHH----------------
Confidence            9999999999999999999999998 9999999999999 999999999999999877653222                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          ++|+    +|+++||.+++.+|++++..
T Consensus       201 ----------------------------------------------------~lA~----~la~~~p~a~~~~K~~l~~~  224 (289)
T 3h0u_A          201 ----------------------------------------------------GIAA----RMSGFPRDALIAAKSAINAI  224 (289)
T ss_dssp             ----------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhh
Confidence                                                                3444    79999999999999999987


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV  424 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~  424 (461)
                      .         . ++.++++.|...+..++.++|++||+++|++
T Consensus       225 ~---------~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          225 S---------L-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             H---------S-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             c---------c-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            6         4 7899999999999999999999999999994

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=9.6e-52  Score=404.33  Aligned_cols=253  Identities=19%  Similarity=0.227  Sum_probs=207.2

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      +++.+.++..+++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........ 
T Consensus         4 ~~~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~-   80 (263)
T 3l3s_A            4 SQDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG-RIFCAGHDLKEIGRHRADPD-   80 (263)
T ss_dssp             ----CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCSCSCCCCC-----C-
T ss_pred             CccceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhcccccc-
Confidence            345667776689999999999999 999999999999999999999999999999998 89999999998753210000 


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                          ........++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        81 --------------------~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~p  140 (263)
T 3l3s_A           81 --------------------EGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLP  140 (263)
T ss_dssp             --------------------CSHHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECC
T ss_pred             --------------------ccHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCc
Confidence                                011223346666778889999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++ ++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                  
T Consensus       141 e~~~Gl~-~~g~~~~l~r~vG~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~------------------  199 (263)
T 3l3s_A          141 GVQNGGF-CTTPAVAVSRVIGRR-AVTEMALTGATYD-ADWALAAGLINRILPEAALATHVA------------------  199 (263)
T ss_dssp             TTTTTSC-CHHHHHHHHTTSCHH-HHHHHHHHCCEEE-HHHHHHHTSSSEECCHHHHHHHHH------------------
T ss_pred             hhccCCC-CccHHHHHHHHcCHH-HHHHHHHcCCCCC-HHHHHHCCCccEEeCHHHHHHHHH------------------
Confidence            9999999 578999999999998 9999999999999 999999999999999776653222                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|+++||.+++.+|++++... 
T Consensus       200 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-  224 (263)
T 3l3s_A          200 --------------------------------------------------DLAG----ALAARNQAPLRRGLETLNRHL-  224 (263)
T ss_dssp             --------------------------------------------------HHHH----HHHSSCHHHHHHHHHHHHHHT-
T ss_pred             --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh-
Confidence                                                              3444    799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhh
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL  423 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl  423 (461)
                              ..+++++++.|.+.+..++.++|++||++||.
T Consensus       225 --------~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~  256 (263)
T 3l3s_A          225 --------ELPLEQAYALATPVMVEHFMDPGRRHLDWIDE  256 (263)
T ss_dssp             --------TSCHHHHHHHHHHHHHHHHC------------
T ss_pred             --------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhh
Confidence                    56899999999999999999999999999998

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=3.8e-52  Score=406.51  Aligned_cols=250  Identities=17%  Similarity=0.227  Sum_probs=213.0

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      +.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++....         
T Consensus         7 v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~---------   75 (260)
T 1sg4_A            7 VEPDA-GAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS---------   75 (260)
T ss_dssp             EEEET-TTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC---------
T ss_pred             EEEEe-cCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccC---------
Confidence            44444 6899999999997 699999999999999999999999999999999558999999999864210         


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEc--CCceEecccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT--EKTLLAMPEN  225 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~--e~a~f~~pe~  225 (461)
                                        ......++...+.++.+|.++||||||+|||+|+|||++|+++|||||++  ++++|++||+
T Consensus        76 ------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~  137 (260)
T 1sg4_A           76 ------------------PAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNET  137 (260)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGG
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchh
Confidence                              00122244556678889999999999999999999999999999999999  8999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                    
T Consensus       138 ~~Gl~p~~g~~~~l~~~vG~~-~a~~llltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~--------------------  195 (260)
T 1sg4_A          138 QLGIIAPFWLKDTLENTIGHR-AAERALQLGLLFP-PAEALQVGIVDQVVPEEQVQSTAL--------------------  195 (260)
T ss_dssp             GGTCCCCHHHHHHHHHHHCHH-HHHHHHHHTCCBC-HHHHHHHTSSSEEECGGGHHHHHH--------------------
T ss_pred             hhCCCCchhHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHcCCCCEecCHHHHHHHHH--------------------
Confidence            999999999999999999997 9999999999999 999999999999999888764222                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      +||+    +|+.+||.+++.+|++++...   
T Consensus       196 ------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---  220 (260)
T 1sg4_A          196 ------------------------------------------------SAIA----QWMAIPDHARQLTKAMMRKAT---  220 (260)
T ss_dssp             ------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHH---
T ss_pred             ------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---
Confidence                                                            4444    799999999999999999875   


Q ss_pred             CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCC
Q 012534          386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPK  431 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~  431 (461)
                            ..++.++++.|.+.+..++.++|++||+++|+ +| |+|+
T Consensus       221 ------~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~~~  258 (260)
T 1sg4_A          221 ------ASRLVTQRDADVQNFVSFISKDSIQKSLQMYL-ER-LKEE  258 (260)
T ss_dssp             ------HHHHHTTHHHHHHHHHHHHTSHHHHHHHTC----------
T ss_pred             ------hccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-Hh-hccc
Confidence                  34688889999999999999999999999999 67 7775

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.7e-51  Score=400.65  Aligned_cols=244  Identities=16%  Similarity=0.194  Sum_probs=203.7

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.+++ +++|+|||||.| ++||+|+|++++.....        
T Consensus         9 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--------   77 (254)
T 3isa_A            9 LAIER-RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAG-RNFSAGFDFTDYETQSE--------   77 (254)
T ss_dssp             EEEEE-CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEST-TCSCCCBCCTTCTTSCH--------
T ss_pred             EEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCC-CceeeCcChHHhhccCc--------
Confidence            77887 79999999999999999999999999999999987 589999999998 89999999998743110        


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                         ......+...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus        78 -------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~  138 (254)
T 3isa_A           78 -------------------GDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKF  138 (254)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGG
T ss_pred             -------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhcc
Confidence                               0111233445678889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|   ++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                      
T Consensus       139 Gl~p---g~~~l~~~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~----------------------  191 (254)
T 3isa_A          139 GLVL---GTRRFRDIVGAD-QALSILGSARAFD-ADEARRIGFVRDCAAQAQWPALID----------------------  191 (254)
T ss_dssp             TCCC---SHHHHHHHHCHH-HHHHHHTTTCEEE-HHHHHHTTSSSEECCGGGHHHHHH----------------------
T ss_pred             CccH---HHHHHHHHcCHH-HHHHHHHhCCCCc-HHHHHHCCCccEEeChhHHHHHHH----------------------
Confidence            9998   478999999998 9999999999999 999999999999999988764322                      


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                    ++++    ++++.||.+++.+|++++.       
T Consensus       192 ----------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~-------  214 (254)
T 3isa_A          192 ----------------------------------------------AAAE----AATALDPATRATLHRVLRD-------  214 (254)
T ss_dssp             ----------------------------------------------HHHH----HHTTSCHHHHHHHHHHHSC-------
T ss_pred             ----------------------------------------------HHHH----HHHcCCHHHHHHHHHHHhh-------
Confidence                                                          3333    7999999999999999853       


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCC
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPAS  436 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~  436 (461)
                           ..    ++.|...+...+.++|++||+++|+ +| |+|.|++..
T Consensus       215 -----~~----~~~e~~~~~~~~~s~d~~egi~af~-ek-r~p~~~~~~  252 (254)
T 3isa_A          215 -----DH----DDADLAALARSAAQPGFKARIRDYL-AQ-PAAEGHHHH  252 (254)
T ss_dssp             -----CC----HHHHHHHHHHHHHSTTHHHHHHHHH-HC----------
T ss_pred             -----hh----HHHHHHHHHHHhCCHHHHHHHHHHH-hc-CCCCCCCCC
Confidence                 12    2457777888889999999999999 67 899999864

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=3.7e-51  Score=395.68  Aligned_cols=239  Identities=16%  Similarity=0.205  Sum_probs=210.9

Q ss_pred             eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      +.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... . .  
T Consensus         5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~-~--   78 (243)
T 2q35_A            5 QLTEL-GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFSSGASKEFLIRKTRGE-V-E--   78 (243)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECBSCHHHHHHHHTTC-C-C--
T ss_pred             EEEEe-eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCCChHHHhhccchh-h-H--
Confidence            34454 789999999999999999999999999999999999999999999998 8999999999886532110 0 0  


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                                  .+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus        79 ----------------------------~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~  130 (243)
T 2q35_A           79 ----------------------------VLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKY  130 (243)
T ss_dssp             ----------------------------CCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHH
T ss_pred             ----------------------------HHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCcccc
Confidence                                        0234557889999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  307 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~  307 (461)
                      |++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                      
T Consensus       131 Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~----------------------  186 (243)
T 2q35_A          131 GFTPVGATSLILREKLGSE-LAQEMIYTGENYR-GKELAERGIPFPVVSRQDVLNYAQ----------------------  186 (243)
T ss_dssp             TSCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHTTCSSCEECHHHHHHHHH----------------------
T ss_pred             CCCCcchHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCCCEecChhHHHHHHH----------------------
Confidence            9999999999999999997 9999999999999 999999999999998776653221                      


Q ss_pred             cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534          308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK  387 (461)
Q Consensus       308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~  387 (461)
                                                                    +||+    +|+++||.+++.+|++++...     
T Consensus       187 ----------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-----  211 (243)
T 2q35_A          187 ----------------------------------------------QLGQ----KIAKSPRLSLVALKQHLSADI-----  211 (243)
T ss_dssp             ----------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHHHH-----
T ss_pred             ----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh-----
Confidence                                                          4444    799999999999999999876     


Q ss_pred             CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhh
Q 012534          388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL  423 (461)
Q Consensus       388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl  423 (461)
                          ..++.++++.|.+.+..++.++|++||+++|.
T Consensus       212 ----~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          212 ----KAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             ----hcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence                34688999999999999999999999999873

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.5e-49  Score=392.27  Aligned_cols=195  Identities=19%  Similarity=0.203  Sum_probs=166.4

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      |.|+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus         6 m~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~   83 (280)
T 1pjh_A            6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDT   83 (280)
T ss_dssp             CCBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC------
T ss_pred             ccCCceEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcCHHHHhhcccccc
Confidence            4567788887 789999999999999999999999999999999999999999999998 89999999998753211000


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHH-HHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEc-CCceE
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEM-IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLL  220 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~-e~a~f  220 (461)
                      . .. .               ...... ..++...+.++..|.++||||||+|||+|+|||++|+++|||||++ ++++|
T Consensus        84 ~-~~-~---------------~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f  146 (280)
T 1pjh_A           84 N-KY-P---------------SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL  146 (280)
T ss_dssp             --CC-S---------------SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEE
T ss_pred             c-ch-h---------------hhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEE
Confidence            0 00 0               000001 1223334567788999999999999999999999999999999999 99999


Q ss_pred             eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534          221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  278 (461)
Q Consensus       221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~  278 (461)
                      ++||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++
T Consensus       147 ~~pe~~lGl~p~~g~~~~l~r~vG~~-~A~~llltg~~~~-a~eA~~~GLv~~vv~~~  202 (280)
T 1pjh_A          147 LYPFANLGLITEGGTTVSLPLKFGTN-TTYECLMFNKPFK-YDIMCENGFISKNFNMP  202 (280)
T ss_dssp             ECCHHHHTCCCCTTHHHHHHHHHCHH-HHHHHHHTTCCEE-HHHHHHTTCCSEECCCC
T ss_pred             eCchhhcCCCCCccHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHCCCcceeeCCc
Confidence            99999999999999999999999998 9999999999999 99999999999999986

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=7.6e-48  Score=384.19  Aligned_cols=254  Identities=15%  Similarity=0.111  Sum_probs=214.9

Q ss_pred             CCccceEEEE-ecCcEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEecCCCccccCCChh
Q 012534           63 GAEEFVKGNV-HPNGVAVITLDRPKA----LNAMNLDMDIKYKSFLDEWES-----DPRVKCVLIEGSGPRAFCAGMDIK  132 (461)
Q Consensus        63 ~~~~~i~~~~-~~~~V~~ItLnrP~~----~Nal~~~m~~eL~~~l~~~~~-----d~~vr~vVltg~G~~~FcaG~Dl~  132 (461)
                      ..|+.|.+.. .+++|++||||||++    +|+||.+|+.+|.++|+.++.     |+++|+|||||.| ++||+|+|++
T Consensus        27 ~~y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G-~~FcaG~Dl~  105 (305)
T 3m6n_A           27 NIGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDS-DVFNLGGDLA  105 (305)
T ss_dssp             --CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESS-SSSBCCBCHH
T ss_pred             cCCceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC-CCeecCcCHH
Confidence            3467776653 378999999999998    559999999999999999987     5899999999987 8999999999


Q ss_pred             hHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHH---hhCCCcEEEEeCCccchhhhHhhhcC
Q 012534          133 GVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKI---SEYKKPYISLMDGVTMGFGIGISGHG  209 (461)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~kPvIAavnG~a~GgG~~Lalac  209 (461)
                      ++........                       ......++...+..+..+   ..+||||||+|||+|+|||++|+++|
T Consensus       106 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~Lalac  162 (305)
T 3m6n_A          106 LFCQLIREGD-----------------------RARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSC  162 (305)
T ss_dssp             HHHHHHHHTC-----------------------HHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHS
T ss_pred             HHHhcccccc-----------------------HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhC
Confidence            9876432110                       011223444444444444   56999999999999999999999999


Q ss_pred             CeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHh
Q 012534          210 RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA  289 (461)
Q Consensus       210 D~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~  289 (461)
                      ||||++++++|++||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.    
T Consensus       163 D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~-~A~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~----  236 (305)
T 3m6n_A          163 HTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAH-LAQKIMLEGNLYS-AEQLLGMGLVDRVVPRGQGVAAVE----  236 (305)
T ss_dssp             SEEEEETTCEEECGGGGGTCCCCSSHHHHHTTTSCHH-HHHHHHHHCCEEE-HHHHHHHTSCSEEECTTCHHHHHH----
T ss_pred             CEEEEcCCCEEECchhccCcCCCccHHHHHHHHhcHH-HHHHHHHcCCCCC-HHHHHHCCCCCEecChhHHHHHHH----
Confidence            9999999999999999999999999999999999998 9999999999999 999999999999999999875332    


Q ss_pred             cccCCChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCch
Q 012534          290 VTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPF  369 (461)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~  369 (461)
                                                                                      ++|+    +|++ +|.
T Consensus       237 ----------------------------------------------------------------~~a~----~la~-~p~  247 (305)
T 3m6n_A          237 ----------------------------------------------------------------QVIR----ESKR-TPH  247 (305)
T ss_dssp             ----------------------------------------------------------------HHHH----HHTT-CHH
T ss_pred             ----------------------------------------------------------------HHHH----HHhh-ChH
Confidence                                                                            4444    6875 899


Q ss_pred             HHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534          370 SLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV  424 (461)
Q Consensus       370 al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~  424 (461)
                      +++.+|++++...         ..+++++++.|.+.+..++.++|....+-+.++
T Consensus       248 a~~~~K~~l~~~~---------~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~  293 (305)
T 3m6n_A          248 AWAAMQQVREMTT---------AVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLV  293 (305)
T ss_dssp             HHHHHHHHHHTTT---------CCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            9999999999876         578999999999999999999999888888775

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=5.7e-49  Score=384.39  Aligned_cols=240  Identities=15%  Similarity=0.181  Sum_probs=206.2

Q ss_pred             CCccceEEEEecC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           63 GAEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        63 ~~~~~i~~~~~~~-~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      ..++.|.++. ++ +|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....  
T Consensus        20 ~~~~~i~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~--   95 (263)
T 2j5g_A           20 TKYENLHFHR-DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG-DAWMAEIDFPSLGDVTN--   95 (263)
T ss_dssp             GSCTTEEEEE-CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECEECSGGGCCTTS--
T ss_pred             CCCCeEEEEE-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCcccCcCHHHHhccCC--
Confidence            3466788887 67 9999999999999999999999999999999999999999999998 89999999998642100  


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                                              ......++.....++.++.++||||||+|||+|+ ||++|+++|||||++++++|+
T Consensus        96 ------------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~  150 (263)
T 2j5g_A           96 ------------------------PREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQ  150 (263)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEEC
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEe
Confidence                                    0011123444556778899999999999999999 599999999999999999999


Q ss_pred             c-cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534          222 M-PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI  300 (461)
Q Consensus       222 ~-pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~  300 (461)
                      + ||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.               
T Consensus       151 ~~pe~~lGl~p~~g~~~~L~r~vG~~-~A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~---------------  213 (263)
T 2j5g_A          151 DMPHLNAGIVPGDGVHILWPLALGLY-RGRYFLFTQEKLT-AQQAYELNVVHEVLPQSKLMERAW---------------  213 (263)
T ss_dssp             CCHHHHHTCCCCSSHHHHHHHHHHHH-HHHHHHHTTCCEE-HHHHHHTTSCSEEECGGGHHHHHH---------------
T ss_pred             cCcccccccCCCccHHHHHHHHcCHH-HHHHHHHcCCCCC-HHHHHHCCCccEecChHHHHHHHH---------------
Confidence            9 999999999999999999999997 9999999999999 999999999999999888764222               


Q ss_pred             HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534          301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK  380 (461)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~  380 (461)
                                                                           ++|+    +|+++||.+++.+|++++.
T Consensus       214 -----------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~  236 (263)
T 2j5g_A          214 -----------------------------------------------------EIAR----TLAKQPTLNLRYTRVALTQ  236 (263)
T ss_dssp             -----------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHh
Confidence                                                                 4444    7999999999999999998


Q ss_pred             HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                      ..         ..++.+++..|.           ..|||+||+ .|
T Consensus       237 ~~---------~~~l~~~l~~e~-----------~~eg~~af~-~~  261 (263)
T 2j5g_A          237 RL---------KRLVNEGIGYGL-----------ALEGITATD-LR  261 (263)
T ss_dssp             HH---------HHHHHHHHHHHH-----------HHHHHHHHH-TT
T ss_pred             hh---------hccHHHHHHHHH-----------HHhhHHHHH-hc
Confidence            76         346777777764           449999999 55

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=1.7e-48  Score=393.34  Aligned_cols=281  Identities=17%  Similarity=0.214  Sum_probs=209.2

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      ..++.|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++++........
T Consensus        32 ~~~~~i~~e~-~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G-~~FcaG~Dl~~~~~~~~~~~  109 (333)
T 3njd_A           32 DNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDLSAYAEGSSSAG  109 (333)
T ss_dssp             TSCSSEEEEE-ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEEST-TSSBCCBC------------
T ss_pred             CCCCeEEEEE-ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecCcCHHHHhhcccccc
Confidence            4678899998 799999999999999999999999999999999999999999999998 89999999999865321110


Q ss_pred             CCCCCCCCCCCCCCcchhhh---------hhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEE
Q 012534          143 NTPLVPKVPLKCGDVKEIST---------QNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI  213 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ri  213 (461)
                      .....      .........         .-.......++..+..++..|.++||||||+|||+|+|||++|+++|||||
T Consensus       110 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ri  183 (333)
T 3njd_A          110 GGSPY------EGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVI  183 (333)
T ss_dssp             ---CC------TTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEE
T ss_pred             ccccc------ccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEE
Confidence            00000      000000000         000001123455566778889999999999999999999999999999999


Q ss_pred             EcCCceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccC
Q 012534          214 VTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFS  293 (461)
Q Consensus       214 a~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~  293 (461)
                      |+++++|++||+++|++|++|   +|++++|.. ++++|+|||+.|+ |+||+++||||+|||++++.+.+.        
T Consensus       184 as~~a~f~~pe~~lG~~P~~g---~l~~~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~--------  250 (333)
T 3njd_A          184 AAADAKIGYPPMRVWGVPAAG---LWAHRLGDQ-RAKRLLFTGDCIT-GAQAAEWGLAVEAPDPADLDARTE--------  250 (333)
T ss_dssp             ECTTCEEECGGGGTTCCCTTC---CHHHHHCHH-HHHHHHTTCCEEE-HHHHHHTTSSSBCCCGGGHHHHHH--------
T ss_pred             ECCCCeeechhhceeccCHHH---HHHHHHHHH-HHHHHHhcCCCCC-HHHHHHCCCccEecChHHHHHHHH--------
Confidence            999999999999999999887   478999998 9999999999999 999999999999999988764322        


Q ss_pred             CChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHH
Q 012534          294 EDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL  373 (461)
Q Consensus       294 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~  373 (461)
                                                                                  ++|+    +|+++||.+++.
T Consensus       251 ------------------------------------------------------------~lA~----~ia~~~~~al~~  266 (333)
T 3njd_A          251 ------------------------------------------------------------RLVE----RIAAMPVNQLIM  266 (333)
T ss_dssp             ------------------------------------------------------------HHHH----HHHTSCHHHHHH
T ss_pred             ------------------------------------------------------------HHHH----HHHcCCHHHHHH
Confidence                                                                        4444    799999999999


Q ss_pred             HHHHHHHHhhhcCCCccccCCHHHH--HHHHHHHHHhh------cCCCcHHHHHHhhhcCCCCCCCCCCCCcc
Q 012534          374 TQKYFSKVASAHGKTDNELSKLSGV--MKYEYRVALRS------SLRSDFAEGVRAVLVDKDQNPKWNPASLE  438 (461)
Q Consensus       374 tk~~l~~~~~~~~~~~~~~~~l~~~--l~~E~~~~~~~------~~s~d~~egv~afl~~K~r~P~w~~~~~~  438 (461)
                      +|++++....        ...+...  +...+......      +......+|+++|+ +| |.|.|.+....
T Consensus       267 ~K~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~g~~a~~-ek-R~~~f~~~~~~  329 (333)
T 3njd_A          267 AKLACNTALL--------NQGVATSQMVSTVFDGIARHTPEGHAFVATAREHGFREAV-RR-RDEPMGDHGRR  329 (333)
T ss_dssp             HHHHHHHHHH--------TTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHCHHHHH-HH-HHGGGTCCTTC
T ss_pred             HHHHHHHHHH--------hcchhHHHHHHHHHHHHHhcChHHHHHHHHhhhHHHHHHH-Hh-cCCCCCCcccC
Confidence            9999998762        3344433  22222222111      11122379999999 67 89999986543

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=6e-48  Score=370.98  Aligned_cols=227  Identities=18%  Similarity=0.151  Sum_probs=199.2

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.+++| ++|+|||||.| ++||+|+|++++....       
T Consensus         5 ~~v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g-~~F~aG~Dl~~~~~~~-------   73 (233)
T 3r6h_A            5 GPVTYTH-DDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNH-RVFSGGFDLKVLTSGE-------   73 (233)
T ss_dssp             CCEEEEE-ETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCS-SEEECCSCHHHHC----------
T ss_pred             CceEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCC-CCccCCcChHHHhccC-------
Confidence            3577887 7999999999995 6999999999999999999987 58999999998 8999999999985421       


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN  225 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~  225 (461)
                                          ......++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus        74 --------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~  133 (233)
T 3r6h_A           74 --------------------AKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEV  133 (233)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGG
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchh
Confidence                                011234566667888999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534          226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  305 (461)
Q Consensus       226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~  305 (461)
                      ++|++|++|++++|++++|.. +++++++||+.++ |+||+++||||++||++++.+.+.                    
T Consensus       134 ~~Gl~~~~~g~~~l~~~~g~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------  191 (233)
T 3r6h_A          134 AIGMTIPYAAMEVLKLRLTPS-AYQQAAGLAKTFF-GETALAAGFIDEISLPEVVLSRAE--------------------  191 (233)
T ss_dssp             GGTCCCCHHHHHHHHHHSCHH-HHHHHHHSCCEEC-HHHHHHHTSCSEECCGGGHHHHHH--------------------
T ss_pred             hhCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHcCCCcEeeCHHHHHHHHH--------------------
Confidence            999999999999999999997 9999999999999 999999999999999988764322                    


Q ss_pred             hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534          306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH  385 (461)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~  385 (461)
                                                                      +||+    +|+++||.+++.+|++++...   
T Consensus       192 ------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---  216 (233)
T 3r6h_A          192 ------------------------------------------------EAAR----EFAGLNQQAHNATKLRARAEA---  216 (233)
T ss_dssp             ------------------------------------------------HHHH----HHHTSCHHHHHHHHHHTTHHH---
T ss_pred             ------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHHH---
Confidence                                                            4444    799999999999999999876   


Q ss_pred             CCCccccCCHHHHHHHHHHHH
Q 012534          386 GKTDNELSKLSGVMKYEYRVA  406 (461)
Q Consensus       386 ~~~~~~~~~l~~~l~~E~~~~  406 (461)
                            ..+++++++.|...+
T Consensus       217 ------~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          217 ------LKAIRAGIDGIEAEF  231 (233)
T ss_dssp             ------HHHHHHHHHTSHHHH
T ss_pred             ------HhHHHHHHHHHHHHh
Confidence                  457899998887764

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=2.3e-47  Score=366.64  Aligned_cols=225  Identities=20%  Similarity=0.193  Sum_probs=198.2

Q ss_pred             cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+  |+|||||.| ++||+|+|++++....       
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~--~~vvltg~g-~~F~aG~Dl~~~~~~~-------   73 (232)
T 3ot6_A            6 DLVSYHL-DDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDR--AIVIVTGQP-GILSGGYDLKVMTSSA-------   73 (232)
T ss_dssp             HHEEEEE-ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHTT--CEEEEECBT-EEEECCBCHHHHHHCH-------
T ss_pred             cceEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCC--CEEEEECCC-CCccCCcCHHHHhhCh-------
Confidence            3577887 7999999999996 69999999999999999999874  999999998 8999999999986511       


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEeccc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPE  224 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe  224 (461)
                                           .....++...+.++.+|.++||||||+|||+|+|||++|+++|||||++++ ++|++||
T Consensus        74 ---------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe  132 (232)
T 3ot6_A           74 ---------------------EAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNE  132 (232)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCT
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcc
Confidence                                 012235566677889999999999999999999999999999999999998 8999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|+++++++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.                   
T Consensus       133 ~~~Gl~p~~~g~~~l~~~ig~~-~a~~l~ltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~-------------------  191 (232)
T 3ot6_A          133 VQIGMTMHHAGIELARDRLRKS-AFNRSVINAEMFD-PEGAMAAGFLDKVVSVEELQGAAL-------------------  191 (232)
T ss_dssp             TTTTCCCCHHHHHHHHHHSCHH-HHHHHHTSCCEEC-HHHHHHHTSCSEEECTTTHHHHHH-------------------
T ss_pred             cccCCCCchhHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHCCCCCEecCHHHHHHHHH-------------------
Confidence            9999998888899999999997 9999999999999 999999999999999998875322                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       ++|+    +|+++||.+++.+|++++...  
T Consensus       192 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  216 (232)
T 3ot6_A          192 -------------------------------------------------AVAA----QLKKINMNAHKKTKLKVRKGL--  216 (232)
T ss_dssp             -------------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHHHH--
T ss_pred             -------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHHh--
Confidence                                                             4444    799999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHH
Q 012534          385 HGKTDNELSKLSGVMKYEYRVA  406 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~  406 (461)
                             ..+++++++.|.+.+
T Consensus       217 -------~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          217 -------LDTLDAAIEQDRQHM  231 (232)
T ss_dssp             -------HHHHHHHHHHHHHHC
T ss_pred             -------HhHHHHHHHHHHHhc
Confidence                   457999999988753

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.7e-47  Score=372.83  Aligned_cols=236  Identities=16%  Similarity=0.203  Sum_probs=202.3

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      ++.|.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...   +   
T Consensus        15 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~---~---   86 (257)
T 1szo_A           15 YENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLG---T---   86 (257)
T ss_dssp             CTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCS---S---
T ss_pred             CceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CccccCcCchhhhcC---C---
Confidence            45688887 789999999999999999999999999999999999999999999998 899999999986310   0   


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec-c
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM-P  223 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~-p  223 (461)
                                           ......++...+.++.+|.++||||||+|||+|+ ||++|+++|||||++++++|++ |
T Consensus        87 ---------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~p  144 (257)
T 1szo_A           87 ---------------------PHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGP  144 (257)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTT
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCc
Confidence                                 0011123344566788899999999999999999 5999999999999999999999 9


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+.                  
T Consensus       145 e~~lGl~p~~g~~~~l~r~vG~~-~A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~------------------  204 (257)
T 1szo_A          145 HFPSGIVPGDGAHVVWPHVLGSN-RGRYFLLTGQELD-ARTALDYGAVNEVLSEQELLPRAW------------------  204 (257)
T ss_dssp             SGGGTCCCTTTHHHHHHHHHCHH-HHHHHHHTTCEEE-HHHHHHHTSCSEEECHHHHHHHHH------------------
T ss_pred             ccccccCCCccHHHHHHHHcCHH-HHHHHHHcCCCCC-HHHHHHCCCceEEeChHHHHHHHH------------------
Confidence            99999999999999999999997 9999999999999 999999999999998766653221                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        ++|+    +|+++||.+++.+|++++... 
T Consensus       205 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-  229 (257)
T 1szo_A          205 --------------------------------------------------ELAR----GIAEKPLLARRYARKVLTRQL-  229 (257)
T ss_dssp             --------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHSHHH-
T ss_pred             --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh-
Confidence                                                              4444    799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV  424 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~  424 (461)
                              ..++.+.++.|...           ||+.+|-.
T Consensus       230 --------~~~l~~~l~~~~~~-----------eg~~a~~~  251 (257)
T 1szo_A          230 --------RRVMEADLSLGLAH-----------EALAAIDL  251 (257)
T ss_dssp             --------HHHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred             --------hccHHHHHHHHHHH-----------hhhhhhhc
Confidence                    34677787776543           78888873

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=1.7e-47  Score=377.20  Aligned_cols=254  Identities=19%  Similarity=0.232  Sum_probs=201.1

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      +.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus        17 ~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~   94 (279)
T 3t3w_A           17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG-KHFSAGHDLRGGGPVPDKLT   94 (279)
T ss_dssp             --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SCSBCCBCCC--------CC
T ss_pred             ccCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceeeccChHhhhhcccccc
Confidence            3467899987 799999999999999999999999999999999999999999999998 89999999999865321100


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                            ............+.++.+|.++||||||+|||+|+|||++|+++||+||++++++|++
T Consensus        95 ----------------------~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~  152 (279)
T 3t3w_A           95 ----------------------LEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSD  152 (279)
T ss_dssp             ----------------------HHHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEEC
T ss_pred             ----------------------hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeC
Confidence                                  0011112233445677889999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|+ |++|+..+ ++++|.. ++++|++||+.++ |+||+++||||+|||++++.+.+.                 
T Consensus       153 pe~~~Gl-~~~~~~~~-~~~vG~~-~A~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~-----------------  211 (279)
T 3t3w_A          153 PVVLMDI-GGVEYHGH-TWELGPR-KAKEILFTGRAMT-AEEVAQTGMVNRVVPRDRLDAETR-----------------  211 (279)
T ss_dssp             CGGGGTC-SSCSSCCH-HHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHH-----------------
T ss_pred             cHHhcCC-CCchHHHH-HhhcCHH-HHHHHHHcCCccC-HHHHHHCCCCcEeeChHHHHHHHH-----------------
Confidence            9999999 44544444 8999998 9999999999999 999999999999999988764322                 


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                         +||+    +|+++||.+++.+|++++...
T Consensus       212 ---------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~  236 (279)
T 3t3w_A          212 ---------------------------------------------------ALAG----EIAKMPPFALRQAKRAVNQTL  236 (279)
T ss_dssp             ---------------------------------------------------HHHH----HHHTSCHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh
Confidence                                                               4444    799999999999999999876


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                              ....+.++++.++..       .++.|+. +|.. . ..|.+++
T Consensus       237 --------~~~~~~~~~~~~~~~-------~~~~~~~-~~~~-~-~~~~~~~  270 (279)
T 3t3w_A          237 --------DVQGFYAAIQSVFDI-------HQTGHGN-AMSV-S-GWPVLVD  270 (279)
T ss_dssp             --------HHTTHHHHHHHHHHH-------HHHHHHH-HHHH-T-SSCC---
T ss_pred             --------hcccHHHHHHHHhhH-------HHHHHHH-HHHh-c-CCccccC
Confidence                    245788888777765       4456666 5553 2 4665554

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=2.4e-47  Score=394.41  Aligned_cols=249  Identities=18%  Similarity=0.181  Sum_probs=201.1

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEec--------CCCccccCCChhhHHH
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--------GPRAFCAGMDIKGVVA  136 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~--------G~~~FcaG~Dl~~~~~  136 (461)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||.        |+++||+|+||+++..
T Consensus       166 ~~~v~~e~-~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~  244 (440)
T 2np9_A          166 MEAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQ  244 (440)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHT
T ss_pred             CceEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhc
Confidence            45688887 78999999999999999999999999999999999999999999995        5579999999998753


Q ss_pred             HhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHH------------hhCCCcEEEEeCCccchhhhH
Q 012534          137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKI------------SEYKKPYISLMDGVTMGFGIG  204 (461)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~kPvIAavnG~a~GgG~~  204 (461)
                      ...   ..  ..                .  .....+.....++..+            .++||||||+|||+|+|||++
T Consensus       245 ~~~---~~--~~----------------~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~e  301 (440)
T 2np9_A          245 GGI---SL--VD----------------F--LMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQ  301 (440)
T ss_dssp             TCC---CT--TT----------------T--HHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHH
T ss_pred             cCc---ch--hh----------------h--hhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchH
Confidence            110   00  00                0  0000111122333333            479999999999999999999


Q ss_pred             hhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHH
Q 012534          205 ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLK  284 (461)
Q Consensus       205 LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~  284 (461)
                      |+++|||||++++++|++||+++|++|++| +++|++++|.. ++++|+|||+.|+ |+||+++||||+|||++++.+.+
T Consensus       302 LALaCDirIAae~A~Fglpev~lGl~P~~g-~~~L~rlvG~~-~A~ellLtG~~i~-A~EA~~~GLV~~Vvp~~eL~~~a  378 (440)
T 2np9_A          302 LLLVFDRVLASSDAYFSLPAAKEGIIPGAA-NLRLGRFAGPR-VSRQVILEGRRIW-AKEPEARLLVDEVVEPDELDAAI  378 (440)
T ss_dssp             HGGGCSEEEEETTCEEECCCTTTCCCCTTH-HHHHHHHHHHH-HHHHHHHHCCCEE-TTSGGGGGTCSEEECHHHHHHHH
T ss_pred             HHhhCCEEEEcCCCEEECchhccCcCcchH-HHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecChHHHHHHH
Confidence            999999999999999999999999999887 68999999997 9999999999999 99999999999999977665322


Q ss_pred             HHHHhcccCCChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHh
Q 012534          285 EALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMG  364 (461)
Q Consensus       285 ~ala~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~  364 (461)
                      .                                                                    ++++    +| 
T Consensus       379 ~--------------------------------------------------------------------~~A~----~l-  385 (440)
T 2np9_A          379 E--------------------------------------------------------------------RSLT----RL-  385 (440)
T ss_dssp             H--------------------------------------------------------------------HHHH----TT-
T ss_pred             H--------------------------------------------------------------------HHHH----Hh-
Confidence            2                                                                    3333    33 


Q ss_pred             cCCchHHHHHHHHHHHHhhhcCCCccccCCH---HHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          365 KGAPFSLCLTQKYFSKVASAHGKTDNELSKL---SGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       365 ~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l---~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                        ++.+++.+|++++...         . .+   .+.+..|...+..++.++|++||+++|+ +|
T Consensus       386 --a~~Av~~~K~~l~~~~---------~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFl-eK  437 (440)
T 2np9_A          386 --DGDAVLANRRMLNLAD---------E-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFG-GR  437 (440)
T ss_dssp             --CSHHHHHHHHHHHHHH---------S-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC---
T ss_pred             --CHHHHHHHHHHHHhhh---------c-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hC
Confidence              5789999999999865         2 33   3566667777778889999999999999 66

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=1.1e-45  Score=405.87  Aligned_cols=267  Identities=22%  Similarity=0.241  Sum_probs=210.0

Q ss_pred             ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCC
Q 012534           73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPL  152 (461)
Q Consensus        73 ~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (461)
                      .+|+|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+||+++......            
T Consensus        27 ~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aGaDl~~~~~~~~~------------   92 (742)
T 3zwc_A           27 LPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN-GNFCAGADIHGFSAFTPG------------   92 (742)
T ss_dssp             CSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCSSSCCSSCSC------------
T ss_pred             eeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CccccCcChHhhhccChh------------
Confidence            37999999999998 5999999999999999999999999999999998 899999999987431100            


Q ss_pred             CCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCC
Q 012534          153 KCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD  232 (461)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~  232 (461)
                                           .....++.+|.+++|||||+|||+|+|||++|+++||||||+++++|++||+++|++|+
T Consensus        93 ---------------------~~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg  151 (742)
T 3zwc_A           93 ---------------------LALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPG  151 (742)
T ss_dssp             ---------------------SHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCT
T ss_pred             ---------------------HHHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCC
Confidence                                 01234667899999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCC
Q 012534          233 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE  312 (461)
Q Consensus       233 ~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~  312 (461)
                      +|++++|+|++|.. +|++|++||+.++ |+||+++||||+|+|++.+ +.+.++++.....                +.
T Consensus       152 ~ggt~rL~rlvG~~-~A~~l~ltG~~i~-a~eA~~~GLv~~vv~~d~~-~~A~~~A~~ia~~----------------~~  212 (742)
T 3zwc_A          152 ARGTQLLPRVVGVP-VALDLITSGKYLS-ADEALRLGILDAVVKSDPV-EEAIKFAQKIIDK----------------PI  212 (742)
T ss_dssp             TTHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEESSCHH-HHHHHHHHHHTTS----------------CS
T ss_pred             ccHHHHHHHhhhHH-HHHHHHHcCCchh-HHHHHHcCCccEecCchhh-HHHHHHHHHHhcC----------------Cc
Confidence            99999999999998 9999999999999 9999999999999997654 3444454432111                11


Q ss_pred             CCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCcccc
Q 012534          313 GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL  392 (461)
Q Consensus       313 ~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~  392 (461)
                      .......      +..........++               ..+....++ ....+.|...+++.++.+.         .
T Consensus       213 ~~~~~~~------~~~~~~~~~~~~~---------------~~~~~~~~k-~~~~~~A~~~~~~~v~~~~---------~  261 (742)
T 3zwc_A          213 EPRRIFN------KPVPSLPNMDSVF---------------AEAIAKVRK-QYPGVLAPETCVRSIQASV---------K  261 (742)
T ss_dssp             GGGCGGG------SCCCCCTTHHHHH---------------HHHHHHHHH-HSTTCHHHHHHHHHHHHHH---------H
T ss_pred             hhhhhhc------ccccccchhhhhH---------------HHHHHHHhh-hccchhHHHHHHHHHHHHh---------h
Confidence            0000000      0000000001000               111111111 1334579999999999887         6


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534          393 SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV  424 (461)
Q Consensus       393 ~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~  424 (461)
                      .+++++++.|.+.+..++.+++.++++++|+.
T Consensus       262 ~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~  293 (742)
T 3zwc_A          262 HPYEVGIKEEEKLFMYLRASGQAKALQYAFFA  293 (742)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            79999999999999999999999999999995

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-45  Score=406.42  Aligned_cols=296  Identities=19%  Similarity=0.188  Sum_probs=226.9

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      ++..+.++..+++|++|||||| +.|+||.+|+.+|.++++.++.|+++|+||||| |+++||+|+||+++.......  
T Consensus         5 ~~~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~--   80 (725)
T 2wtb_A            5 TKGKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGN--   80 (725)
T ss_dssp             --CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred             cCCeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchh--
Confidence            4566888734789999999999 789999999999999999999999999999999 745999999999885321000  


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                      .....                      .+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++|
T Consensus        81 ~~~~~----------------------~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglp  138 (725)
T 2wtb_A           81 VKEPK----------------------AGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLP  138 (725)
T ss_dssp             --CCS----------------------SSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECC
T ss_pred             hhhHH----------------------HHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCc
Confidence            00000                      02233445666789999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|+|++|.. +|++|++||+.++ |+||+++||||++||++++.+.+.+++...            
T Consensus       139 ev~lGl~P~~Ggt~~L~rlvG~~-~A~~l~ltG~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l------------  204 (725)
T 2wtb_A          139 ELQLGVIPGFGGTQRLPRLVGLT-KALEMILTSKPVK-AEEGHSLGLIDAVVPPAELVTTARRWALDI------------  204 (725)
T ss_dssp             GGGGTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEECCTTTHHHHHHHHHHHH------------
T ss_pred             hhccCCCCCccHHHHHHHhcCHH-HHHHHHHcCCCCC-HHHHHHCCccceEcChhHHHHHHHHHHHHH------------
Confidence            99999999999999999999997 9999999999999 999999999999999999988777665431            


Q ss_pred             HHhhcCCCCC-CchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          304 LAKYSSDPEG-EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       304 l~~~~~~~~~-~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                      ....  .|.. ........         + ......+            +-+++++.+++..+.. .|...+|++++.+.
T Consensus       205 a~~~--~p~~~~~~~~~~~---------~-~~~~~~~------------~~~~a~~~~~~~~~g~-pA~~~~k~~~~~~~  259 (725)
T 2wtb_A          205 VGRR--KPWVSSVSKTDKL---------P-PLGEARE------------ILTFAKAQTLKRAPNM-KHPLMCLDAIEVGI  259 (725)
T ss_dssp             HTTS--SCCCCGGGCCTTS---------C-CHHHHHH------------HHHHHHHHHHHHCTTC-CHHHHHHHHHHHHH
T ss_pred             HhcC--CChhhhhhhcccc---------C-ccchHHH------------HHHHHHHHHHHhccCC-cHHHHHHHHHHHhc
Confidence            1110  0110 00000000         0 0000000            1256777777787874 57788999999876


Q ss_pred             hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                               ..+++++++.|.+.+..++.++|+++++++|+ +| |.|++.+.
T Consensus       260 ---------~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~-~k-r~~~~~~~  301 (725)
T 2wtb_A          260 ---------VSGPRAGLEKEAEVASQVVKLDTTKGLIHVFF-SQ-RGTAKVPG  301 (725)
T ss_dssp             ---------HSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH-HGGGCCTT
T ss_pred             ---------cCCHHHHHHHHHHHHHHHhcchhHHHHHHHhh-hh-hhhcccCC
Confidence                     56899999999999999999999999999999 56 77776654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=1.9e-44  Score=396.96  Aligned_cols=295  Identities=16%  Similarity=0.174  Sum_probs=230.2

Q ss_pred             cceEEEEecCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           66 EFVKGNVHPNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        66 ~~i~~~~~~~~V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      +.+.++..+++|++||||||+ +.|+||.+|+.+|.++++.++.|+++|+||||| |+++||+|+||+++.......   
T Consensus         6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~---   81 (715)
T 1wdk_A            6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLP---   81 (715)
T ss_dssp             SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSC---
T ss_pred             CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCC---
Confidence            457777337899999999998 899999999999999999999999999999999 745999999999986421100   


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                           ......+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||
T Consensus        82 ---------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpe  140 (715)
T 1wdk_A           82 ---------------------DAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPE  140 (715)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGG
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChh
Confidence                                 00112234455678889999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCC-hHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSED-PHQDIVAL  303 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~-~~~~~~~~  303 (461)
                      +++|++|++|++++|+|++|.. +|++|++||+.++ |+||+++||||++||++++.+.+.+++....... |. .... 
T Consensus       141 v~lGl~P~~ggt~~L~r~vG~~-~A~~l~ltG~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~-~~~~-  216 (715)
T 1wdk_A          141 VKLGIYPGFGGTVRLPRLIGVD-NAVEWIASGKENR-AEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDY-KAKR-  216 (715)
T ss_dssp             GGGTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCH-HHHH-
T ss_pred             hccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCc-chhc-
Confidence            9999999999999999999998 9999999999999 9999999999999999999887777765421110 10 0000 


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                        +....|......               .....               -..+++.+.+-..+...|...+|++++.+. 
T Consensus       217 --~~~~~p~~~~~~---------------~~~~~---------------~~~~k~~~~~~~~g~~~A~~~~k~~v~~~~-  263 (715)
T 1wdk_A          217 --QPKLEKLKLNAI---------------EQMMA---------------FETAKGFVAGQAGPNYPAPVEAIKTIQKAA-  263 (715)
T ss_dssp             --GGGGSCCSCCHH---------------HHHHH---------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred             --ccccCccccCch---------------hHHHH---------------HHHHHHHHHHhcccCCchHHHHHHHHHHHh-
Confidence              000000000000               00000               123343444555666778999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW  432 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w  432 (461)
                              ..++.++++.|.+.+..++.++|+++++++|+ +| |.|+.
T Consensus       264 --------~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~-~k-r~~~~  302 (715)
T 1wdk_A          264 --------NFGRDKALEVEAAGFAKLAKTSASNCLIGLFL-ND-QELKK  302 (715)
T ss_dssp             --------TCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-HH-HHHHH
T ss_pred             --------cCCHHHHHHHHHHHHHHHhcchhHHHHHHHHH-hh-hhhhc
Confidence                    56899999999999999999999999999999 56 66654

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=2.9e-41  Score=352.16  Aligned_cols=188  Identities=15%  Similarity=0.201  Sum_probs=167.5

Q ss_pred             CccceEEEEecCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEe-cCCCccccCCCh
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWESD-PRVKCVLIEG-SGPRAFCAGMDI  131 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~----------~~Nal~~~m~~eL~~~l~~~~~d-~~vr~vVltg-~G~~~FcaG~Dl  131 (461)
                      .++.+.++. +++|++|+||||+          ++|+||.+|+.+|.++++.++.| +++|+||||| .| ++||+|+|+
T Consensus        19 ~~~~v~ve~-~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G-~~FcAGaDL   96 (556)
T 2w3p_A           19 QYKHWKLSF-NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD-RVFCSGANI   96 (556)
T ss_dssp             GCSSEEEEE-ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSS-SEEECEECH
T ss_pred             cCceEEEEe-eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCC-CcccCCcCH
Confidence            456788887 7899999999998          89999999999999999999999 9999999999 76 899999999


Q ss_pred             hhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHH----hhCCCcEEEEeCCccchhhhHhhh
Q 012534          132 KGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKI----SEYKKPYISLMDGVTMGFGIGISG  207 (461)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~kPvIAavnG~a~GgG~~Lal  207 (461)
                      +++......                           ....+....+.++..|    .++||||||+|||+|+|||++|++
T Consensus        97 ~el~~~~~~---------------------------~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLAL  149 (556)
T 2w3p_A           97 FMLGLSTHA---------------------------WKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELAL  149 (556)
T ss_dssp             HHHHHSCHH---------------------------HHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHH
T ss_pred             HHHhhcccH---------------------------HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHH
Confidence            998642100                           0112334445677788    999999999999999999999999


Q ss_pred             cCCeEEEcCC--ceEeccccc-cCCCCCchHHHHHh--cCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          208 HGRYRIVTEK--TLLAMPENG-IGLFPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       208 acD~ria~e~--a~f~~pe~~-lGl~P~~G~~~~L~--rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      +|||||++++  ++|++||++ +|++|++|++++|+  +++|.. ++++|++||+.|+ |+||+++||||+|||++++.+
T Consensus       150 ACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~-rA~eLlLTGr~is-A~EAl~lGLVdeVVp~~eL~~  227 (556)
T 2w3p_A          150 ACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHD-RADIFCTVVEGVR-GERAKAWRLVDEVVKPNQFDQ  227 (556)
T ss_dssp             HSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHH-HHHHHTTCSSCEE-HHHHHHTTSCSEEECHHHHHH
T ss_pred             hCCEEEEcCCCCcEEecccccccCCCCCccHHHHHHhhccCCHH-HHHHHHHcCCCCC-HHHHHHCCCceEEeChhHHHH
Confidence            9999999999  999999999 99999999999999  999997 9999999999999 999999999999998777654

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.84  E-value=3e-22  Score=216.01  Aligned_cols=169  Identities=15%  Similarity=0.078  Sum_probs=141.2

Q ss_pred             cCcEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCC
Q 012534           74 PNGVAVITLDRPKALNA--MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVP  151 (461)
Q Consensus        74 ~~~V~~ItLnrP~~~Na--l~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (461)
                      +++|++|+||+|.+.|+  ++..+.++|.++|+.++.|+++|+|||++.+     .|+|+....                
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-----pGG~~~~~~----------------  358 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-----PGGSVTASE----------------  358 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-----EEECHHHHH----------------
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-----CCCCHHHHH----------------
Confidence            57899999999998898  7899999999999999999999999999975     377776421                


Q ss_pred             CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc------
Q 012534          152 LKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN------  225 (461)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~------  225 (461)
                                             .+++.+.++..++|||||+|+|+|.|||+.|+++||+|||++++.|+.+++      
T Consensus       359 -----------------------~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~  415 (593)
T 3bf0_A          359 -----------------------VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITT  415 (593)
T ss_dssp             -----------------------HHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEE
T ss_pred             -----------------------HHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCc
Confidence                                   123455677889999999999999999999999999999999999999875      


Q ss_pred             ------ccCCCCCc-------------hHH---------------HHHhcCCCchHH-----HHHHhhcCCCCCcHHHHH
Q 012534          226 ------GIGLFPDV-------------GFS---------------YIAAKGPGGGSV-----GAYLGMTGKRISTPSDAL  266 (461)
Q Consensus       226 ------~lGl~P~~-------------G~~---------------~~L~rlvG~~~~-----a~~l~LtG~~i~~A~eA~  266 (461)
                            ++|+.|+.             +++               ..+.+.+|.. +     +.+++++|+.|+ |+||+
T Consensus       416 ~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~-Rg~~~~a~~~l~~G~~~t-a~eA~  493 (593)
T 3bf0_A          416 VENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADA-RHSTPEQIDKIAQGHVWT-GQDAK  493 (593)
T ss_dssp             CHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHTTCTTCEEE-HHHHH
T ss_pred             hHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhcCCCcC-HHHHH
Confidence                  68987643             222               4566667665 6     889999999999 99999


Q ss_pred             HcCccceecCCCChHHHHHHHH
Q 012534          267 FAGLGTDYVPSGNLGSLKEALL  288 (461)
Q Consensus       267 ~~GLv~~vv~~~~l~~~~~ala  288 (461)
                      ++||||++++.+++.+.+.+++
T Consensus       494 ~~GLVD~v~~~~~~~~~a~~~a  515 (593)
T 3bf0_A          494 ANGLVDSLGDFDDAVAKAAELA  515 (593)
T ss_dssp             HHTSCSEECCHHHHHHHHHHHS
T ss_pred             HCCCCcCccCHHHHHHHHHHHc
Confidence            9999999998777766555543

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.80  E-value=3.5e-19  Score=171.36  Aligned_cols=168  Identities=15%  Similarity=0.050  Sum_probs=126.7

Q ss_pred             cCcEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534           74 PNGVAVITLDRPKALNAMNLD-------MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (461)
Q Consensus        74 ~~~V~~ItLnrP~~~Nal~~~-------m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (461)
                      +++|++|.++.+=..+.-...       .+.+|.++|+.+..|+++|+|||++.     |.|+|+.....          
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~~~~----------   66 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYESAE----------   66 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHHHHH----------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHHHHH----------
Confidence            577999999876332210111       36899999999999999999999986     46888865321          


Q ss_pred             CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhh-CCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc--
Q 012534          147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISE-YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP--  223 (461)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p--  223 (461)
                                                   +++.+..+.. ++|||||+|+|+|.|||+.|+++||+||+++++.|+.+  
T Consensus        67 -----------------------------i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv  117 (240)
T 3rst_A           67 -----------------------------IHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGV  117 (240)
T ss_dssp             -----------------------------HHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCC
T ss_pred             -----------------------------HHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccce
Confidence                                         2334556666 89999999999999999999999999999999999999  


Q ss_pred             -------------------ccccCCCCCchHH--------------------------HHHhcCCCchHHHHHHhhcCCC
Q 012534          224 -------------------ENGIGLFPDVGFS--------------------------YIAAKGPGGGSVGAYLGMTGKR  258 (461)
Q Consensus       224 -------------------e~~lGl~P~~G~~--------------------------~~L~rlvG~~~~a~~l~LtG~~  258 (461)
                                         +++.|-+++.+..                          ..-.|-+...  ..+.+++|+.
T Consensus       118 ~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~--~~~~~~~g~~  195 (240)
T 3rst_A          118 IMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKA--EVKKIADGRV  195 (240)
T ss_dssp             EEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHCSSCE
T ss_pred             eeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHhcCCc
Confidence                               6677777776622                          2233444533  3344789999


Q ss_pred             CCcHHHHHHcCccceecCCCChHHHHHHHH
Q 012534          259 ISTPSDALFAGLGTDYVPSGNLGSLKEALL  288 (461)
Q Consensus       259 i~~A~eA~~~GLv~~vv~~~~l~~~~~ala  288 (461)
                      ++ |++|+++||||++.+.+++.+.+.+++
T Consensus       196 ~~-a~~A~~~GLVD~i~~~~~~~~~~~~~~  224 (240)
T 3rst_A          196 YD-GRQAKKLNLVDELGFYDDTITAMKKDH  224 (240)
T ss_dssp             EE-HHHHHHTTSSSEECCHHHHHHHHHHHC
T ss_pred             cc-HHHHHHcCCCcccCCHHHHHHHHHHHh
Confidence            99 999999999999998777665444443

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.77  E-value=1.8e-18  Score=164.66  Aligned_cols=148  Identities=16%  Similarity=0.161  Sum_probs=124.2

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCC
Q 012534           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLK  153 (461)
Q Consensus        74 ~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (461)
                      .+.|++|+++     |+++..+.+.|.++|+.++++ ++++|||+..     |.|+|+....                  
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~~~~------------------   57 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADAMM------------------   57 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHHHHH------------------
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHHHHH------------------
Confidence            4679999998     479999999999999999875 6999999875     5677765432                  


Q ss_pred             CCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEe---CCccchhhhHhhhcCCeEEEcCCceEeccccccCCC
Q 012534          154 CGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM---DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF  230 (461)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav---nG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~  230 (461)
                                              .++..|..++||||++|   +|+|.|+|+.|+++||+++|.++++|+.+++..++ 
T Consensus        58 ------------------------~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-  112 (230)
T 3viv_A           58 ------------------------NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-  112 (230)
T ss_dssp             ------------------------HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-
T ss_pred             ------------------------HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-
Confidence                                    24445778999999999   99999999999999999999999999999987533 


Q ss_pred             CCchHH---------------HHHhcCCCc--hHHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          231 PDVGFS---------------YIAAKGPGG--GSVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       231 P~~G~~---------------~~L~rlvG~--~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      |..|.+               ..+++..|.  . .+.+++.++..++ |+||+++||||+++++
T Consensus       113 ~~~G~~~~~~~k~~~~~~~~~~~la~~~Gr~~~-~a~~~~~~~~~lt-A~EAle~GliD~V~~~  174 (230)
T 3viv_A          113 SQNGSIIEAPPAITNYFIAYIKSLAQESGRNAT-IAEEFITKDLSLT-PEEALKYGVIEVVARD  174 (230)
T ss_dssp             CTTSCEEECCHHHHHHHHHHHHHHHHHTTCCHH-HHHHHHHTCCEEC-HHHHHHTTSCSEECSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhCcCHH-HHHHHHhcCCeec-HHHHHHcCCceEecCC
Confidence            444432               246777886  5 8999999999999 9999999999999974

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.57  E-value=7.4e-15  Score=145.40  Aligned_cols=153  Identities=14%  Similarity=0.135  Sum_probs=118.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |+++..+..-..|+|+..+.+++.++++.+.++ .+.+|+|+++|      |+|+.+....                   
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG------Garlqeg~~~-------------------  173 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG------GARMQEALMS-------------------  173 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTHHH-------------------
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC------CcCHHHHHHH-------------------
Confidence            666666666678999999999999999999998 89999999986      7787653210                   


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhh-hHhhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFG-IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG-~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~  235 (461)
                                  + ..+......+..+...++|+|++|+|.|.||| +.++++||++||.++|+|++.           +
T Consensus       174 ------------l-~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------G  229 (304)
T 2f9y_B          174 ------------L-MQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------G  229 (304)
T ss_dssp             ------------H-HHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------C
T ss_pred             ------------H-HHHHHHHHHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------c
Confidence                        0 01122222233345569999999999999999 888999999999999999987           3


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHH
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL  287 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~al  287 (461)
                      ...+.+++|..       ++++..+ |+++.++|+||.|++++++.+.+.++
T Consensus       230 p~~i~~~ig~~-------l~~~~~~-Ae~~~~~Glvd~Vv~~~el~~~l~~l  273 (304)
T 2f9y_B          230 PRVIEQTVREK-------LPPGFQR-SEFLIEKGAIDMIVRRPEMRLKLASI  273 (304)
T ss_dssp             HHHHHHHHTSC-------CCTTTTB-HHHHGGGTCCSEECCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcc-------CCcccCC-HHHHHhcCCccEEeCcHHHHHHHHHH
Confidence            45667777754       5788887 99999999999999887665544444

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.55  E-value=2.9e-14  Score=134.97  Aligned_cols=141  Identities=12%  Similarity=0.077  Sum_probs=107.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEM  169 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (461)
                      .++.++.++|.+.|..++.|+.++.|+|.=     .|.|+++...                                   
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-----nSPGG~v~ag-----------------------------------   92 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV-----NTPGGSVSAG-----------------------------------   92 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-----EECCBCHHHH-----------------------------------
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEE-----ECcCCCHHHH-----------------------------------
Confidence            388999999999999999887778777752     3334443321                                   


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchH------------
Q 012534          170 IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGF------------  235 (461)
Q Consensus       170 ~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~------------  235 (461)
                             ..++..|..+++||++.++|.|.++|+.|+++||.  |+|.++++|++++.. |.+|..|.            
T Consensus        93 -------~~I~~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~  164 (218)
T 1y7o_A           93 -------LAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLL  164 (218)
T ss_dssp             -------HHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHH
T ss_pred             -------HHHHHHHHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHH
Confidence                   12334567789999999999999999999999999  999999999999987 44443333            


Q ss_pred             ------HHHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCCC
Q 012534          236 ------SYIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN  279 (461)
Q Consensus       236 ------~~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~  279 (461)
                            ...+++..|.. ..+.+++.+|+.|+ |+||+++||||+++++++
T Consensus       165 ~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~t-a~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          165 KTRNTLEKILAENSGQSMEKVHADAERDNWMS-AQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBC-HHHHHHHTSCSEECCCC-
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHhCCCEEc-HHHHHHCCCCcEEcCcCC
Confidence                  24566666762 26788899999999 999999999999998765

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.46  E-value=6.3e-13  Score=132.75  Aligned_cols=153  Identities=11%  Similarity=0.045  Sum_probs=109.0

Q ss_pred             cCcEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           74 PNGVAVITLDRPK---------ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        74 ~~~V~~ItLnrP~---------~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      +|.-..|.-|+|.         ..++++++....+.++++.+++.. +-+|.|.-.+ +++. |.+..+..         
T Consensus       115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~-Ga~~-g~~ae~~g---------  182 (327)
T 2f9i_A          115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTK-GAYP-GKAAEERG---------  182 (327)
T ss_dssp             TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES-CSCC-CHHHHHTT---------
T ss_pred             CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCC-CCCc-chhhhhhh---------
Confidence            4444445555554         457899999999999999998765 4455555443 2332 32211100         


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                                 .......++..+..+++|+|++|+|.|.|||+.++++||++||.++++|++  
T Consensus       183 ---------------------------~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v--  233 (327)
T 2f9i_A          183 ---------------------------QSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV--  233 (327)
T ss_dssp             ---------------------------HHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS--
T ss_pred             ---------------------------hHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee--
Confidence                                       223344566788999999999999999999999999999999999999885  


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                          +.|.++++..+.+..+.. .+.++    ..++ |++|+++|+||+|++.
T Consensus       234 ----~~peg~a~il~~~~~~a~-~A~e~----~~it-A~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          234 ----ISPEGAAALLWKDSNLAK-IAAET----MKIT-AHDIKQLGIIDDVISE  276 (327)
T ss_dssp             ----SCHHHHHHHHSSCGGGHH-HHHHH----HTCB-HHHHHHTTSSSEEECC
T ss_pred             ----cCchHHHHHHHHHhcchH-HHHHH----cCCC-HHHHHHcCCceEEecC
Confidence                345555554444443334 67666    6798 9999999999999983

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.46  E-value=7.8e-13  Score=132.57  Aligned_cols=140  Identities=12%  Similarity=-0.007  Sum_probs=108.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhh
Q 012534           87 ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQL  166 (461)
Q Consensus        87 ~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (461)
                      ..++++++....+.++++.+++.. +-+|.|.-.+ +++. |....+..                               
T Consensus       151 ~~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~-Ga~~-g~~aE~~g-------------------------------  196 (339)
T 2f9y_A          151 NFGMPAPEGYRKALRLMQMAERFK-MPIITFIDTP-GAYP-GVGAEERG-------------------------------  196 (339)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES-CSCC-SHHHHHTT-------------------------------
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCC-CCcc-chHHHHHH-------------------------------
Confidence            457899999999999999988765 4555555443 2332 22211100                               


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCch
Q 012534          167 SEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  246 (461)
Q Consensus       167 ~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~  246 (461)
                           .......++..+..+++|+|++|+|.|.|||+.++++||++||.++++|++      +.|.++++.++.+..+..
T Consensus       197 -----~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~  265 (339)
T 2f9y_A          197 -----QSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAP  265 (339)
T ss_dssp             -----HHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHH
T ss_pred             -----HHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHH
Confidence                 233345567789999999999999999999999999999999999999996      567788887777776665


Q ss_pred             HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          247 SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       247 ~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                       .+.++    ..++ |++|+++|+||+|++.
T Consensus       266 -~Aae~----~~it-A~~a~~~GlVd~VV~e  290 (339)
T 2f9y_A          266 -LAAEA----MGII-RPRLKELKLIDSIIPE  290 (339)
T ss_dssp             -HHHHH----HTCS-HHHHHTTTSCSCCCCC
T ss_pred             -HHHHH----cCCC-HHHHHHcCCeeEEecC
Confidence             77777    6798 9999999999999983

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.88  E-value=8.2e-09  Score=96.71  Aligned_cols=138  Identities=11%  Similarity=0.032  Sum_probs=96.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEE--ecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVlt--g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .++..+.+.+.+.|..++.++.++.|+|.  +.|+.+|       .-                                 
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~-------a~---------------------------------   74 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSIS-------AG---------------------------------   74 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHH-------HH---------------------------------
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHH-------HH---------------------------------
Confidence            36789999999999999877666666553  4442221       11                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCC---CchH-------
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFP---DVGF-------  235 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P---~~G~-------  235 (461)
                               ..++..|..+++||++.+.|.|.++|..++++||.  |++.+++.+++....-|...   +...       
T Consensus        75 ---------~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~  145 (208)
T 2cby_A           75 ---------MAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAV  145 (208)
T ss_dssp             ---------HHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHH
T ss_pred             ---------HHHHHHHHhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHH
Confidence                     23444577789999999999999999999999999  99999999988765432210   0000       


Q ss_pred             -----HHHHhcCCCchH-HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          236 -----SYIAAKGPGGGS-VGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       236 -----~~~L~rlvG~~~-~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                           ...+.+..|... ...+++..|+.++ |+||+++||||++.+.
T Consensus       146 ~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~t-a~eA~e~GLvD~i~~~  192 (208)
T 2cby_A          146 IKKEMFRLNAEFTGQPIERIEADSDRDRWFT-AAEALEYGFVDHIITR  192 (208)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHTTCEEE-HHHHHHHTSCSEECSC
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHhCCcEEc-HHHHHHcCCCcEecCc
Confidence                 011333334431 3456778899999 9999999999999964

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.43  E-value=2.3e-06  Score=79.59  Aligned_cols=140  Identities=11%  Similarity=0.084  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .++..+.+.+.+.|..++.++..+.|+|  -+.|       +++...                                 
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG-------G~v~~~---------------------------------   74 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG-------GSVTAG---------------------------------   74 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHHH---------------------------------
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC-------CCHHHH---------------------------------
Confidence            4889999999999999987665665554  4444       222211                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCC---CCCchHH-H----
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGL---FPDVGFS-Y----  237 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl---~P~~G~~-~----  237 (461)
                               ..+...|..+++||++.+.|.|.++|..|+++||  .|++.+++.|.+....-|.   ..+.--. .    
T Consensus        75 ---------~~I~~~i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~  145 (203)
T 3qwd_A           75 ---------FAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILK  145 (203)
T ss_dssp             ---------HHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTT
T ss_pred             ---------HHHHHHHHHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHH
Confidence                     1234457778999999999999999999999999  6999999999886554322   1111100 0    


Q ss_pred             -------HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCCC
Q 012534          238 -------IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN  279 (461)
Q Consensus       238 -------~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~  279 (461)
                             .+.+.-|.. .....++-...-++ |+||+++||||+|+.+..
T Consensus       146 ~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lt-a~EA~e~GliD~I~~~~~  194 (203)
T 3qwd_A          146 TREKLNRILSERTGQSIEKIQKDTDRDNFLT-AEEAKEYGLIDEVMVPET  194 (203)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHTSCCCEE-HHHHHHHTSCSEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhhcCceec-HHHHHHcCCcCEecCCcc
Confidence                   112222322 13444444556677 999999999999997654

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.40  E-value=3.8e-06  Score=78.85  Aligned_cols=138  Identities=11%  Similarity=0.018  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .++..+...+.+.|..++.++. +.|+|  -+.|       +++..-                                 
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG-------Gsv~a~---------------------------------   85 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYINSPG-------GSINEG---------------------------------   85 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC-------BCHHHH---------------------------------
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC-------CCHHHH---------------------------------
Confidence            3788899999999998866554 65555  4544       222111                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCC---CCchHHH-----
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLF---PDVGFSY-----  237 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~---P~~G~~~-----  237 (461)
                               ..++..|..+++||++.+.|.|..+|.-|+++||.  |+|.+++.+++.....|..   .+.....     
T Consensus        86 ---------~~I~~~i~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~  156 (215)
T 2f6i_A           86 ---------LAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILY  156 (215)
T ss_dssp             ---------HHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHH
T ss_pred             ---------HHHHHHHHhcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHH
Confidence                     23444577788999999999999999999999999  9999999998766543321   1111000     


Q ss_pred             -------HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534          238 -------IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  278 (461)
Q Consensus       238 -------~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~  278 (461)
                             .+.+..|.. ....+++-.+.-++ |+||+++||||++.+..
T Consensus       157 ~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lt-a~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          157 LKKLLYHYLSSFTNQTVETIEKDSDRDYYMN-ALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHTTCEEC-HHHHHHHTSCSEECCCS
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHhCCeecC-HHHHHHCCCCCEecCCc
Confidence                   011111221 13333333344568 99999999999999753

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.38  E-value=9.3e-07  Score=81.66  Aligned_cols=138  Identities=14%  Similarity=0.044  Sum_probs=93.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEE--ecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVlt--g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .++..+.+.+.+.|..++.++..+.|+|.  +.|       +++..-                                 
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG-------G~v~a~---------------------------------   73 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG-------GVITAG---------------------------------   73 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHHH---------------------------------
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC-------CCHHHH---------------------------------
Confidence            37889999999999998876666766664  444       222211                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCC---CchHHH-----
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFP---DVGFSY-----  237 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P---~~G~~~-----  237 (461)
                               ..++..|..+++||++.+.|.|..+|.-|+++||.  |++.+++.++......|...   +.....     
T Consensus        74 ---------~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~  144 (193)
T 1yg6_A           74 ---------MSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILK  144 (193)
T ss_dssp             ---------HHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHhcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHH
Confidence                     22444577788999999999999999999999999  99999999887654433210   100000     


Q ss_pred             -------HHhcCCCchH-HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          238 -------IAAKGPGGGS-VGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       238 -------~L~rlvG~~~-~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                             .+.+.-|... ....++-.+.-++ |+||+++||||+++.+
T Consensus       145 ~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~t-a~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          145 VKGRMNELMALHTGQSLEQIERDTERDRFLS-APEAVEYGLVDSILTH  191 (193)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHTSSCEEEE-HHHHHHHTSSSEECCC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcCCeEEc-HHHHHHcCCCCEecCC
Confidence                   1222224321 2333433345568 9999999999999864

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.28  E-value=5.9e-06  Score=80.20  Aligned_cols=145  Identities=13%  Similarity=0.046  Sum_probs=95.5

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE--ecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        79 ~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVlt--g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      +|.++.+     ++.++...+...|..++.++..+.|+|.  +.|       +++..-                      
T Consensus        84 II~l~G~-----I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPG-------GsV~ag----------------------  129 (277)
T 1tg6_A           84 IVCVMGP-----IDDSVASLVIAQLLFLQSESNKKPIHMYINSPG-------GVVTAG----------------------  129 (277)
T ss_dssp             EEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHHH----------------------
T ss_pred             EEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC-------CCHHHH----------------------
Confidence            3555544     8888999999999988664445666664  444       222211                      


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCch
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVG  234 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G  234 (461)
                                          ..++..|..+++||++.+.|.|..+|.-|+++||.  |++.+++.++.....-|......
T Consensus       130 --------------------~aIyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~  189 (277)
T 1tg6_A          130 --------------------LAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQAT  189 (277)
T ss_dssp             --------------------HHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHH
T ss_pred             --------------------HHHHHHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHH
Confidence                                12344567788999999999999999999999999  99999999887655433211000


Q ss_pred             HHH---------------HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534          235 FSY---------------IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  278 (461)
Q Consensus       235 ~~~---------------~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~  278 (461)
                      -..               .+.+.-|.. ....+++-.+.-++ |+||+++||||+++...
T Consensus       190 Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lt-a~EAle~GLID~I~~~~  248 (277)
T 1tg6_A          190 DIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMS-PMEAQEFGILDKVLVHP  248 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEEC-HHHHHHHTSCSEECSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccC-HHHHHHCCCCCEecCcc
Confidence            000               111122322 13344444455678 99999999999999754

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.15  E-value=7.5e-06  Score=76.03  Aligned_cols=135  Identities=14%  Similarity=0.034  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .++..+.+.+.+.|..++.++..+.|+|  -+.|       +++...                                 
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~~~---------------------------------   77 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG-------GMVTAG---------------------------------   77 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHHH---------------------------------
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC-------CCHHHH---------------------------------
Confidence            4788999999999999887655565555  3444       222211                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH--------
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY--------  237 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~--------  237 (461)
                               ..++..|..+++||++.+.|.|.++|.-|+++||-  |++.+++.+.+....-|.   .|-..        
T Consensus        78 ---------~~I~~~i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~  145 (201)
T 3p2l_A           78 ---------MGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKN  145 (201)
T ss_dssp             ---------HHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHH
Confidence                     22444577789999999999999999999999998  999999998776654221   11100        


Q ss_pred             ----------HHhcCCCchH-HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          238 ----------IAAKGPGGGS-VGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       238 ----------~L~rlvG~~~-~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                                .+.+.-|... ...+++-...-++ |+||+++||||+++++
T Consensus       146 l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lt-a~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          146 ILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMM-ADEAKAYGLIDHVIES  195 (201)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEE-HHHHHHHTSCSEECCC
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHhhcCeeec-HHHHHHcCCccEecCC
Confidence                      1122223321 2333333334467 9999999999999975

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.87  E-value=4.3e-05  Score=81.59  Aligned_cols=156  Identities=13%  Similarity=0.013  Sum_probs=105.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+..-..-++.+...+.+.++++.+.+.. +-+|.|.-+      +|+.+.+-........              
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dS------gGArlqe~~~~l~~~~--------------  165 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNC------SGVKFDEQEKVYPNRR--------------  165 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECC------CEECGGGHHHHSSSTT--------------
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC------CCCCccccchhccccc--------------
Confidence            5555555555567899999999999999998764 456666543      3555655332110000              


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEec--cccccCCCCCc
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAM--PENGIGLFPDV  233 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~--pe~~lGl~P~~  233 (461)
                                     .+...+..+..+....+|+|++|.|.|.|||+.. ..||++|++++ +.+++  |++--++.|- 
T Consensus       166 ---------------~~g~i~~~~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~-  228 (587)
T 1pix_A          166 ---------------GGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPK-  228 (587)
T ss_dssp             ---------------STTHHHHHHHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSS-
T ss_pred             ---------------cHHHHHHHHHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccc-
Confidence                           0111223345677889999999999999999999 99999999875 88887  3222222111 


Q ss_pred             hHHHHHhcCCCchHHHHHHh-hcCCCCCcHHH-----HH--HcCccceecCCCC
Q 012534          234 GFSYIAAKGPGGGSVGAYLG-MTGKRISTPSD-----AL--FAGLGTDYVPSGN  279 (461)
Q Consensus       234 G~~~~L~rlvG~~~~a~~l~-LtG~~i~~A~e-----A~--~~GLv~~vv~~~~  279 (461)
                             -.+|.. +|.+++ .||+.++ +++     .+  +.|++|.++++++
T Consensus       229 -------~~~d~~-~A~el~~~tge~v~-~e~lgga~~h~~~~GvvD~vv~~e~  273 (587)
T 1pix_A          229 -------GHVDLE-YANEIADMVDRTGK-TEPPGAVDIHYTETGFMREVYASEE  273 (587)
T ss_dssp             -------SSCCHH-HHHHHHHHHHTTCC-CCCSSBHHHHTTTSCCSCEEESSHH
T ss_pred             -------cccchh-HHHHHHHHhCCccC-hhhcccHHHHHhhcCceeEecCCHH
Confidence                   135766 999999 8988876 443     33  5999999998755

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.79  E-value=0.00026  Score=65.62  Aligned_cols=101  Identities=13%  Similarity=0.126  Sum_probs=68.4

Q ss_pred             HHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCC----CCCchHHH------------H
Q 012534          177 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGL----FPDVGFSY------------I  238 (461)
Q Consensus       177 ~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl----~P~~G~~~------------~  238 (461)
                      ..++..|...+.||...+-|.|.+.|.-|++++|  .|++.+++++-+-....|.    ..+.--..            .
T Consensus        86 laIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~i  165 (205)
T 4gm2_A           86 ISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEI  165 (205)
T ss_dssp             HHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            3455567788999999999999999999999999  5999999998775554333    22211000            1


Q ss_pred             HhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534          239 AAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  278 (461)
Q Consensus       239 L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~  278 (461)
                      +.+.-|.. ....+++-...-++ |+||+++||||+|+..+
T Consensus       166 ya~~TG~~~e~I~~~m~rd~~ms-a~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          166 ISKNTEKDTNVISNVLERDKYFN-ADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHHTCCHHHHHHHTTSCEEEE-HHHHHHTTSCSEECCC-
T ss_pred             HHHHhCCCHHHHHHHhcCCcccC-HHHHHHcCCccEeecCC
Confidence            11112321 12334444455687 99999999999999753

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.63  E-value=0.0018  Score=63.15  Aligned_cols=148  Identities=15%  Similarity=0.135  Sum_probs=96.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |+++..|..-..-+++....+.+.++++.+.+.. +-+|.|.-.| ++     -+.+-..                    
T Consensus       123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsg-Ga-----r~qEGi~--------------------  175 (285)
T 2f9i_B          123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASG-GA-----RMQEGII--------------------  175 (285)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC-SC-----CGGGHHH--------------------
T ss_pred             EEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-Cc-----chhhhhh--------------------
Confidence            5555444433567899999999999999988764 5677776655 33     1222000                    


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHh-hhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~L-alacD~ria~e~a~f~~pe~~lGl~P~~G~  235 (461)
                                 .+. ........+.++.....|.|++|-|.|.||+... ++.+|++++.++|.+++--.       -+.
T Consensus       176 -----------sl~-q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP-------~vi  236 (285)
T 2f9i_B          176 -----------SLM-QMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGR-------RVI  236 (285)
T ss_dssp             -----------HHH-HHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH-------HHH
T ss_pred             -----------hHh-HHHHHHHHHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCH-------HHH
Confidence                       000 1223334556677789999999999999998555 78999999998887766221       111


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      ...+    |.. .       -+.+.+|+.+.+.|+||.|++++++.+
T Consensus       237 ~~~~----~~~-~-------~e~~~~Ae~~~~~G~iD~Iv~~~e~r~  271 (285)
T 2f9i_B          237 EQTI----NEK-L-------PDDFQTAEFLLEHGQLDKVVHRNDMRQ  271 (285)
T ss_dssp             HHHH----TSC-C-------CTTTTBHHHHHHTTCCSEECCGGGHHH
T ss_pred             HHHh----ccc-c-------hHhHhhHHHHHhcCCccEEeChHHHHH
Confidence            1222    211 1       123444788889999999999877654

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.53  E-value=0.00038  Score=74.87  Aligned_cols=87  Identities=5%  Similarity=-0.022  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEecCCCccccC-CChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHH
Q 012534           95 MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAG-MDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVF  173 (461)
Q Consensus        95 m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (461)
                      ...++.+.|+.+..|+.++.|+|.-..+     | +++....                                      
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~insp-----GgG~v~~~~--------------------------------------  107 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLKNF-----AGGDQPSMQ--------------------------------------  107 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECTEE-----EECCHHHHH--------------------------------------
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeCCC-----CCCcHHHHH--------------------------------------
Confidence            4678899999999999999999975421     3 4444322                                      


Q ss_pred             HHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534          174 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  226 (461)
Q Consensus       174 ~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~  226 (461)
                       .+++.+..+....|||||.+++ +.-+|+-|+++||-+++.+.+.++...+.
T Consensus       108 -~I~~~i~~~k~~gkpvva~~~~-aas~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          108 -YIGKALKEFRDSGKPVYAVGEN-YSQGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             -HHHHHHHHHHHTTCCEEEEESC-EEHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             -HHHHHHHHHHhcCCeEEEEEcc-chhHHHHHHHhCCEEEECCCceEEEeccc
Confidence             2234445555567999999886 56788999999999999999988876654

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.50  E-value=0.0017  Score=68.44  Aligned_cols=138  Identities=19%  Similarity=0.137  Sum_probs=91.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+-.-..-++.....+.+.++++.+.+. .+-+|.|.-+| ++     -+.+-..                    
T Consensus        99 v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSg-Ga-----RmqEg~~--------------------  151 (530)
T 3iav_A           99 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-GA-----RIQEGVA--------------------  151 (530)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-SB-----CGGGTHH--------------------
T ss_pred             EEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----chhhhhh--------------------
Confidence            444444444467899999999999999999876 35667776544 23     3332110                    


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~~lGl~P~~G~  235 (461)
                                 .+..+ ...+..+.++.. ..|+|++|.|.|.|||......||++|++++ +.+++.            
T Consensus       152 -----------~l~~~-~~i~~~~~~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a------------  206 (530)
T 3iav_A          152 -----------SLGAY-GEIFRRNTHASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT------------  206 (530)
T ss_dssp             -----------HHHHH-HHHHHHHHHTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS------------
T ss_pred             -----------hHHHH-HHHHHHHHHHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec------------
Confidence                       01111 111122222333 3999999999999999999999999999875 887763            


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHH-------HHcCccceecCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDA-------LFAGLGTDYVPSG  278 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA-------~~~GLv~~vv~~~  278 (461)
                              |+.  ..+ ..||+.++ +++.       ...|++|.+++++
T Consensus       207 --------GP~--vi~-~~~ge~v~-~e~LGGa~~h~~~sGv~d~va~de  244 (530)
T 3iav_A          207 --------GPD--VIK-TVTGEDVG-FEELGGARTHNSTSGVAHHMAGDE  244 (530)
T ss_dssp             --------CHH--HHH-HHHCCCCC-HHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             --------CHH--HHH-HHhCCcCC-hhhcchHHHHHhccCceeEEecCh
Confidence                    322  111 15678887 7664       5799999999865

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.25  E-value=0.0042  Score=65.42  Aligned_cols=139  Identities=14%  Similarity=0.082  Sum_probs=91.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+-.-..-++.....+.+.++++.+.+.. +-+|.|.-+|      |+.+.+-..                    
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSG------GARmqeg~~--------------------  159 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGINDSG------GARIQEGVD--------------------  159 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------CBCGGGTHH--------------------
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeCCC------ccccCcccc--------------------
Confidence            4444444444568999999999999999987754 5566666544      333433111                    


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~~lGl~P~~G~  235 (461)
                                 .+..+-..++. +..+. -..|+|++|.|.|.|||.-...+||++|+.++ +.+++             
T Consensus       160 -----------sl~~~~~i~~~-~~~~s-~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~-------------  213 (531)
T 3n6r_B          160 -----------SLAGYGEVFQR-NIMAS-GVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV-------------  213 (531)
T ss_dssp             -----------HHHHHHHHHHH-HHHTT-TTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBS-------------
T ss_pred             -----------hhhhHHHHHHH-HHHHh-CCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEee-------------
Confidence                       01111111111 11222 45899999999999999999999999999985 66554             


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHH-------HHcCccceecCCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDA-------LFAGLGTDYVPSGN  279 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA-------~~~GLv~~vv~~~~  279 (461)
                             -|++  ..+ ..||+.++ +++.       ...|++|.++++++
T Consensus       214 -------aGP~--vI~-~~~ge~v~-~E~LGGa~~h~~~sG~~d~v~~~e~  253 (531)
T 3n6r_B          214 -------TGPD--VVK-TVTNEQVS-AEELGGATTHTRKSSVADAAFENDV  253 (531)
T ss_dssp             -------SCHH--HHH-HHHCCCCC-HHHHHBHHHHHHTTSCCSEEESSHH
T ss_pred             -------cCHH--HHH-HHhCCccC-hhhcchHHHHhhccCcceEEeCCHH
Confidence                   1322  222 15788898 8888       78999999998743

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.23  E-value=0.0029  Score=66.75  Aligned_cols=138  Identities=14%  Similarity=0.102  Sum_probs=90.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+-.=..-++.....+.+..+++.+.+. .+-+|.|..+|      |+.+.+-...                   
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~SG------GARmqeg~~s-------------------  150 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYDSG------GARIQEGIDS-------------------  150 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC------SBCGGGTHHH-------------------
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCChhhHHHH-------------------
Confidence            454555544467899999999999999999876 45677776544      4444432210                   


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS  236 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~  236 (461)
                                  +..+-.-++.. ..+ .-..|+|++|.|+|.||+......||++|+.+++.+++.             
T Consensus       151 ------------l~~~~~i~~~~-~~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a-------------  203 (523)
T 1on3_A          151 ------------LSGYGKMFFAN-VKL-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT-------------  203 (523)
T ss_dssp             ------------HHHHHHHHHHH-HHH-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS-------------
T ss_pred             ------------HHHHHHHHHHH-HHh-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec-------------
Confidence                        11111111121 222 345999999999999999999999999999998887664             


Q ss_pred             HHHhcCCCchHHHHHHhhcCCCCCcH-----HHHH--HcCccceecCCC
Q 012534          237 YIAAKGPGGGSVGAYLGMTGKRISTP-----SDAL--FAGLGTDYVPSG  278 (461)
Q Consensus       237 ~~L~rlvG~~~~a~~l~LtG~~i~~A-----~eA~--~~GLv~~vv~~~  278 (461)
                             |++  ..+- .+|+.++ .     .|.+  +.|++|.+++++
T Consensus       204 -------GP~--vI~~-~~ge~~~-~e~lggae~h~~~~G~vd~vv~d~  241 (523)
T 1on3_A          204 -------GPQ--VIKS-VTGEDVT-ADELGGAEAHMAISGNIHFVAEDD  241 (523)
T ss_dssp             -------CHH--HHHH-HHCCCCC-HHHHHSHHHHHHTTCCCSEEESSH
T ss_pred             -------CHH--HHHH-HhCCcCC-hHhcccHHHHhhccCceEEEeCCH
Confidence                   221  1111 3466666 4     3334  599999999853

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.11  E-value=0.0065  Score=64.34  Aligned_cols=138  Identities=13%  Similarity=0.044  Sum_probs=89.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+-.-..-++.....+.+.++++.+.+. .+-+|.|.-+|      |+.+.+-..                    
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSG------GARmqeg~~--------------------  162 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGINDGA------GARIQEGVV--------------------  162 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SCCGGGTTH--------------------
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCCchhHHH--------------------
Confidence            444444444466799999999999999999876 45677776544      444443211                    


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~~lGl~P~~G~  235 (461)
                                 .+..+-.-++.. ..+ .-..|+|++|.|+|.||+......||++|+.++ +.+++.            
T Consensus       163 -----------sl~~~~~i~~~~-~~~-s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a------------  217 (548)
T 2bzr_A          163 -----------SLGLYSRIFRNN-ILA-SGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT------------  217 (548)
T ss_dssp             -----------HHHHHHHHHHHH-HHT-TTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS------------
T ss_pred             -----------HHHHHHHHHHHH-HHh-cCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec------------
Confidence                       011111111111 122 344999999999999999999999999999986 777654            


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHH-----HHH--HcCccceecCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPS-----DAL--FAGLGTDYVPSG  278 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~-----eA~--~~GLv~~vv~~~  278 (461)
                              |++  ..+- .+|+.++ .+     +.+  ..|++|.+++++
T Consensus       218 --------GP~--vI~~-~~ge~v~-~e~lggae~h~~~sG~~d~vv~d~  255 (548)
T 2bzr_A          218 --------GPD--VIKT-VTGEEVT-MEELGGAHTHMAKSGTAHYAASGE  255 (548)
T ss_dssp             --------CHH--HHHH-HHCCCCC-HHHHHBHHHHHHTSSCCSEEESSH
T ss_pred             --------cHH--HHHH-HhCCcCC-hHhcccHHHHhhccCceeEEeCCH
Confidence                    322  1111 3466666 43     333  599999999853

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=97.09  E-value=0.028  Score=59.02  Aligned_cols=188  Identities=13%  Similarity=0.095  Sum_probs=122.4

Q ss_pred             ccceEEEE-ecCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHH-hcCCCceEEEEEecCCCccccCC
Q 012534           65 EEFVKGNV-HPNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGM  129 (461)
Q Consensus        65 ~~~i~~~~-~~~~V~~ItLnrP~~~-------------Nal~~~m~~eL~~~l~~~-~~d~~vr~vVltg~G~~~FcaG~  129 (461)
                      |+.+.... ...+++.++...|..-             +..-..|..||.++|-.+ -+++++...++...|+       
T Consensus       265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~-------  337 (556)
T 2w3p_A          265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGD-------  337 (556)
T ss_dssp             ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESC-------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCC-------
Confidence            34444433 2457899999886531             222345888996665554 5678899889888773       


Q ss_pred             ChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeC-Cccchh-hhHhhh
Q 012534          130 DIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD-GVTMGF-GIGISG  207 (461)
Q Consensus       130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavn-G~a~Gg-G~~Lal  207 (461)
                       ...+......-.                   ..++-.-..+......+.+.+|.-...-++|.|. |.|+.| =+||++
T Consensus       338 -~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~  397 (556)
T 2w3p_A          338 -ARHLLAADASLM-------------------QHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAF  397 (556)
T ss_dssp             -HHHHHHHHHHHH-------------------HTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHH
T ss_pred             -HHHHhhhHHHHH-------------------hccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHH
Confidence             233332110000                   0001111222333334566778788888999986 677655 689999


Q ss_pred             cCCeEEEcC-------CceEeccccccCCCCCchHHHHH-hcCCCchHHHHH--HhhcCCCCCcHHHHHHcCccceecCC
Q 012534          208 HGRYRIVTE-------KTLLAMPENGIGLFPDVGFSYIA-AKGPGGGSVGAY--LGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       208 acD~ria~e-------~a~f~~pe~~lGl~P~~G~~~~L-~rlvG~~~~a~~--l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      +||..++-+       .+.+.+.+.++|.+|-.-+..+| .|..|.. -..+  -...|+.++ +++|.++|||+...++
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  475 (556)
T 2w3p_A          398 AADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEET-EPLDAVRSRIGQAIK-PVEAERLGLVTASPDD  475 (556)
T ss_dssp             TSSEEEECCCTTCTTTSCCEECCGGGGTTSCCTTSSCHHHHHTTTCH-HHHHHHHTTTTSCBC-HHHHHHTTSSSBCCCT
T ss_pred             HhhhhhhhcCCCCCCCCceeEeeccccCcccCCCchhHHHHHhcCCc-chHHHHHHHhCCCCC-HHHHHhcCCeecCccc
Confidence            999999953       47899999999999977666666 5555653 3332  235699999 9999999999998876


Q ss_pred             CChH
Q 012534          278 GNLG  281 (461)
Q Consensus       278 ~~l~  281 (461)
                      -+.+
T Consensus       476 ~~~~  479 (556)
T 2w3p_A          476 IDWA  479 (556)
T ss_dssp             TTHH
T ss_pred             CChH
Confidence            5554

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.03  E-value=0.0022  Score=67.60  Aligned_cols=138  Identities=15%  Similarity=0.026  Sum_probs=89.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+-.=..-++.....+.+..+++.+.+. .+-+|.|..+|      |+.+.+-...                   
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~SG------GaRmqeg~~s-------------------  146 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGINDSG------GARIQEGALS-------------------  146 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SBCGGGTHHH-------------------
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCChhHHHHH-------------------
Confidence            444444444456799999999999999999875 46677776544      4445432210                   


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-c-eEeccccccCCCCCch
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-T-LLAMPENGIGLFPDVG  234 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a-~f~~pe~~lGl~P~~G  234 (461)
                                  +..+-.-++.+ ..+ .-..|+|++|.|+|.||+......||++|+.++ + .+++.           
T Consensus       147 ------------l~~~~~i~~~~-~~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a-----------  201 (522)
T 1x0u_A          147 ------------LEGYGAVFKMN-VMA-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT-----------  201 (522)
T ss_dssp             ------------HHHHHHHHHHH-HHH-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESS-----------
T ss_pred             ------------HHHHHHHHHHH-HHh-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEec-----------
Confidence                        11111111111 122 345999999999999999999999999999987 7 66551           


Q ss_pred             HHHHHhcCCCchHHHHHHhhcCCCCCcH-----HHHH--HcCccceecCCC
Q 012534          235 FSYIAAKGPGGGSVGAYLGMTGKRISTP-----SDAL--FAGLGTDYVPSG  278 (461)
Q Consensus       235 ~~~~L~rlvG~~~~a~~l~LtG~~i~~A-----~eA~--~~GLv~~vv~~~  278 (461)
                               |++  ..+- .+|+.++ .     .|.+  +.|++|.+++++
T Consensus       202 ---------GP~--vI~~-~~ge~~~-~e~lggae~~~~~~G~~d~vv~~~  239 (522)
T 1x0u_A          202 ---------GPE--ITKV-VLGEEVS-FQDLGGAVVHATKSGVVHFMVDSE  239 (522)
T ss_dssp             ---------CHH--HHHH-TTCCCCC-HHHHHBHHHHHHTTCCCSEEESCH
T ss_pred             ---------CHH--HHHH-HhCCcCC-hhhcchHHHHhhcCceeEEEeCCH
Confidence                     221  1111 4566666 4     3334  589999999863

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.66  E-value=0.0096  Score=62.76  Aligned_cols=159  Identities=12%  Similarity=0.044  Sum_probs=97.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |++|..|.--..-+++.+..+.+.++++.+.+. .+-+|.|.-.+  .|..|.+-....                     
T Consensus       327 V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~--G~~~G~~~E~~G---------------------  382 (522)
T 1x0u_A          327 VGIVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTP--GYVPGTDQEYKG---------------------  382 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCSHHHHHTT---------------------
T ss_pred             EEEEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCC--CCCCchHHHHHH---------------------
Confidence            444444433334589999999999999988764 56777776654  354443221110                     


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhc----CCeEEEcCCceEeccccccCCCCC
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGH----GRYRIVTEKTLLAMPENGIGLFPD  232 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lala----cD~ria~e~a~f~~pe~~lGl~P~  232 (461)
                                     .....-.++..+.....|+|++|-|.|.|||+-....    +|+++|.+++.+++       ..+
T Consensus       383 ---------------~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v-------~gp  440 (522)
T 1x0u_A          383 ---------------IIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAV-------TGP  440 (522)
T ss_dssp             ---------------HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEES-------SCH
T ss_pred             ---------------HHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEe-------cCH
Confidence                           2334445677788899999999999999997755544    99999988877765       222


Q ss_pred             chHHHHHhcC-CCc----hHHHHHHhh--cCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          233 VGFSYIAAKG-PGG----GSVGAYLGM--TGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       233 ~G~~~~L~rl-vG~----~~~a~~l~L--tG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      -|+...+-+. +-.    ...-.++.-  .-..-+ +..+.+.|+||.|+++.++..
T Consensus       441 egaa~Il~r~~i~~~~d~~~~~~~l~~~y~~~~~~-~~~~~~~G~iD~II~p~~tR~  496 (522)
T 1x0u_A          441 EGAVRILYRKEIQQASNPDDVLKQRIAEYRKLFAN-PYWAAEKGLVDDVIEPKDTRR  496 (522)
T ss_dssp             HHHHHHHTSSSSSSSSSSSSSSHHHHHHHHHHHSS-SHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhcCC-HHHHHhcCCCcEeECHHHHHH
Confidence            3333333222 110    000011110  001134 688999999999999877653

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.65  E-value=0.0067  Score=64.20  Aligned_cols=143  Identities=14%  Similarity=0.102  Sum_probs=92.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+..-..-++.....+.+..+++.+.+.. +-+|.|.-+| +++.     .+-     .... +...        
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSg-GARl-----~~q-----~~~~-~~~~--------  181 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALENR-LPCIYLVDSG-GANL-----PRQ-----DEVF-PDRE--------  181 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC-CBCG-----GGG-----GGTS-SSTT--------
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-CCCC-----CCc-----ceee-cccc--------
Confidence            5555555545667899999999999999998764 5566665544 3432     110     0000 0000        


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcC-CceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e-~a~f~~pe~~lGl~P~~G~  235 (461)
                                     .+...+..+..+.....|+|++|.|.|.|||.-....||++|+.+ ++.+       |+      
T Consensus       182 ---------------~~~~i~~~~~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i-------~~------  233 (555)
T 3u9r_B          182 ---------------HFGRIFFNQANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATI-------FL------  233 (555)
T ss_dssp             ---------------STTHHHHHHHHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBC-------BS------
T ss_pred             ---------------cHHHHHHHHHHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceE-------EE------
Confidence                           011112233346667899999999999999999999999988876 3433       32      


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHH-------HHcCccceecCCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDA-------LFAGLGTDYVPSGN  279 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA-------~~~GLv~~vv~~~~  279 (461)
                             -|+.  ..+ ..||+.++ +++.       ...|++|.++++++
T Consensus       234 -------aGP~--vik-~~~ge~~~-~e~LGGa~~h~~~sGv~d~v~~de~  273 (555)
T 3u9r_B          234 -------AGPP--LVK-AATGEVVS-AEELGGADVHCKVSGVADHYAEDDD  273 (555)
T ss_dssp             -------SCHH--HHH-HHHCCCCC-HHHHHBHHHHHHTTCSCSEEESSHH
T ss_pred             -------ccHH--HHH-HHhcCccC-hhhccchhhhhhccCceeEEeCCHH
Confidence                   1321  112 25789998 8877       68999999998654

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.30  E-value=0.033  Score=58.71  Aligned_cols=138  Identities=16%  Similarity=0.081  Sum_probs=87.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+-.-..-++.....+.+.++++.+.+.. +-+|.|.-+| +++.     .+-...                   
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dSg-GAR~-----qeg~~~-------------------  153 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSG-GARI-----QEGVDA-------------------  153 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC-SBCG-----GGTHHH-------------------
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHcC-CCEEEEECCC-CCCc-----cchhHH-------------------
Confidence            5555555444667899999999999999888764 4566665544 3433     221110                   


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~~lGl~P~~G~  235 (461)
                                  +..+-..+... . ......|+|++|.|.|.|||......||++|+.++ +.+++             
T Consensus       154 ------------l~g~~~~~~~~-~-~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~-------------  206 (527)
T 1vrg_A          154 ------------LAGYGEIFLRN-T-LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFI-------------  206 (527)
T ss_dssp             ------------HHHHHHHHHHH-H-HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBS-------------
T ss_pred             ------------HHHHHHHHHHH-H-HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEe-------------
Confidence                        00111111122 1 23566999999999999999999999999999987 65332             


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcH-----HHHH--HcCccceecCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTP-----SDAL--FAGLGTDYVPSG  278 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A-----~eA~--~~GLv~~vv~~~  278 (461)
                             -|++  ..+. .+|+.++ .     .+.+  ..|++|.+++++
T Consensus       207 -------aGP~--vi~~-~~ge~v~-~e~lggae~~~~~~G~vd~vv~d~  245 (527)
T 1vrg_A          207 -------TGPN--VIKA-VTGEEIS-QEDLGGAMVHNQKSGNAHFLADND  245 (527)
T ss_dssp             -------SCHH--HHHH-HHCCCCC-HHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             -------cCHH--HHHH-HhCCCCC-ccccccHHHHhhcccceEEEecCH
Confidence                   1321  2221 3466665 4     2333  599999999853

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.84  E-value=0.033  Score=59.35  Aligned_cols=162  Identities=11%  Similarity=-0.016  Sum_probs=94.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..+..-+.-++.....+.+.++++.+.+.. +-+|.|.-+| +++.     .+ .........             
T Consensus       108 V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dSg-GArl-----~~-qe~~~~~l~-------------  166 (588)
T 3gf3_A          108 VYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNCS-GVEF-----PN-QDKVYPNRR-------------  166 (588)
T ss_dssp             EEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECCC-CBCG-----GG-HHHHSSSTT-------------
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcCC-CcCc-----cc-ccccccchh-------------
Confidence            4444444444667899999999999999998754 5566666554 3443     11 000000000             


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc--cCCCCCch
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG--IGLFPDVG  234 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~--lGl~P~~G  234 (461)
                                     .+...+..+..+.....|+|++|-|.|.|||.-.++.+|++++.+++.+++.-.+  -|+-|.+ 
T Consensus       167 ---------------~~g~if~~~~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g-  230 (588)
T 3gf3_A          167 ---------------GGGTPFFRNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG-  230 (588)
T ss_dssp             ---------------STTHHHHHHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC----------
T ss_pred             ---------------hHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc-
Confidence                           0011122234456678999999999999998877888888888889988874433  2211211 


Q ss_pred             HHHHHhcCC---CchHHHHHHhhcCCCCCcHHHHH--HcCccceecCCCC
Q 012534          235 FSYIAAKGP---GGGSVGAYLGMTGKRISTPSDAL--FAGLGTDYVPSGN  279 (461)
Q Consensus       235 ~~~~L~rlv---G~~~~a~~l~LtG~~i~~A~eA~--~~GLv~~vv~~~~  279 (461)
                       . +.+.-+   ... ...+-..+.+.+. +.+.+  ..|++|.++++++
T Consensus       231 -~-~~~~~~~~~~~~-~~ge~~vs~eeLG-Ga~~h~~~sGv~d~~a~de~  276 (588)
T 3gf3_A          231 -Y-IDDEAAEQIIAA-QIENSKLKVPAPG-SVPIHYDETGFFREVYQNDL  276 (588)
T ss_dssp             --------CHHHHHH-HHHHHHTTCCCTT-BHHHHTTTSCCSCEEESSHH
T ss_pred             -c-ccccchhhhhhh-hccccccChhhcc-chhhhccccccceEEeCCHH
Confidence             0 111100   011 1222225778887 67777  5999999998654

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.54  E-value=0.1  Score=54.95  Aligned_cols=153  Identities=13%  Similarity=0.081  Sum_probs=93.4

Q ss_pred             EEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcch
Q 012534           81 TLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKE  159 (461)
Q Consensus        81 tLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (461)
                      .=|+|. ..-+++++-.....+.++.++.. .+-+|.|.-..  .|..|.+-....                        
T Consensus       335 ia~~~~~~~G~~~~~~~~Kaar~i~~a~~~-~~Plv~lvDtp--G~~~G~~~E~~g------------------------  387 (527)
T 1vrg_A          335 VANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDTP--GYLPGVAQEHGG------------------------  387 (527)
T ss_dssp             EEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHTT------------------------
T ss_pred             EEEcCcccCCCCCHHHHHHHHHHHHHHhhc-CCCeEEEecCC--CCcCchhhHHhH------------------------
Confidence            334444 33579999999999999888654 45666665442  355554322211                        


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhc----CCeEEEcCCceEeccccccCCCCCchH
Q 012534          160 ISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGH----GRYRIVTEKTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lala----cD~ria~e~a~f~~pe~~lGl~P~~G~  235 (461)
                                  .....-.++..+..+..|+|++|=|.|.|||+--...    +|+++|.+++.++       +.++-|+
T Consensus       388 ------------~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pega  448 (527)
T 1vrg_A          388 ------------IIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGA  448 (527)
T ss_dssp             ------------HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHH
T ss_pred             ------------HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHH
Confidence                        2333445667788899999999999998887744433    7887777666665       4433444


Q ss_pred             HHHHhcC-----CCchHHH-HHHhh--cCCCCCcHHHHHHcCccceecCCCChH
Q 012534          236 SYIAAKG-----PGGGSVG-AYLGM--TGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       236 ~~~L~rl-----vG~~~~a-~~l~L--tG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                      ...+-+.     --.. .. .++.-  .-..-+ +..+.+.|+||.|+++.++.
T Consensus       449 a~Il~r~~~~~~~d~~-~~~~~~~~~y~~~~~~-p~~~~~~g~iD~II~p~~tR  500 (527)
T 1vrg_A          449 ANIIFKREIEASSNPE-ETRRKLIEEYKQQFAN-PYIAASRGYVDMVIDPRETR  500 (527)
T ss_dssp             HHHHTHHHHHHSSCHH-HHHHHHHHHHHHHTSS-HHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHhhhhhhcccCHH-HHHHHHHHHHHHhhCC-HHHHHHcCCCCeeeCHHHHH
Confidence            3333221     0111 11 11221  111245 78999999999999986654

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=95.39  E-value=0.11  Score=54.82  Aligned_cols=157  Identities=13%  Similarity=0.162  Sum_probs=95.7

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG  155 (461)
Q Consensus        77 V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (461)
                      |++|- |+|. ..-+++.+-.....+.++.++.. .+-+|.|.-..  .|..|.+-.+..                    
T Consensus       349 Vgvia-n~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt~--Gf~~G~~~E~~G--------------------  404 (548)
T 2bzr_A          349 VGIVA-NQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDVP--GFLPGTDQEYNG--------------------  404 (548)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHTT--------------------
T ss_pred             EEEEE-ECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeecc--CCCCChHHHHhh--------------------
Confidence            44333 4444 33579999999999999988754 45666665442  466665433211                    


Q ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh----cCCeEEEcCCceEeccccccCCCC
Q 012534          156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFP  231 (461)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal----acD~ria~e~a~f~~pe~~lGl~P  231 (461)
                                      .......++..+.....|+|++|=|.|.|||.--..    .+|+++|.++++++       +.+
T Consensus       405 ----------------i~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~-------Vmg  461 (548)
T 2bzr_A          405 ----------------IIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMG  461 (548)
T ss_dssp             ----------------HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSC
T ss_pred             ----------------HHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEE-------ecC
Confidence                            333344566778889999999999999988775543    38887777776665       433


Q ss_pred             CchHHHHHhcC-CCc------h-HHHH-HHhh--cCCCCCcHHHHHHcCccceecCCCChH
Q 012534          232 DVGFSYIAAKG-PGG------G-SVGA-YLGM--TGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       232 ~~G~~~~L~rl-vG~------~-~~a~-~l~L--tG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                      +-|+...+-+. +-.      . ...+ ++.-  .-..-+ +..+.+.|+||.|+++.+..
T Consensus       462 pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~-p~~~a~~g~iD~II~p~~tR  521 (548)
T 2bzr_A          462 ASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVN-PYVAAERGYVGAVIPPSHTR  521 (548)
T ss_dssp             HHHHHHHHTCCC----------CHHHHHHHHHHHHHHHSB-SHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHHHhhCC-HHHHHhcCCCceeeCHHHHH
Confidence            34444444332 100      0 0111 1211  001133 57799999999999987654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=95.24  E-value=0.068  Score=56.30  Aligned_cols=154  Identities=12%  Similarity=0.054  Sum_probs=95.0

Q ss_pred             EEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcch
Q 012534           81 TLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKE  159 (461)
Q Consensus        81 tLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (461)
                      .=|+|. ..-+++++-.....+.++.++.- ++-+|.|.-.  ..|..|.+-.+..                        
T Consensus       331 ian~~~~~~G~~~~~~a~Kaar~i~~~~~~-~iPlv~lvDt--pGf~~G~~~E~~G------------------------  383 (523)
T 1on3_A          331 VANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV--PGFLPGVQQEYGG------------------------  383 (523)
T ss_dssp             EEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHTT------------------------
T ss_pred             EEecCCccCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeC--CCcCcchHHHHhh------------------------
Confidence            334554 23579999999999999888654 4566666544  2466665433211                        


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhc----CCeEEEcCCceEeccccccCCCCCchH
Q 012534          160 ISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGH----GRYRIVTEKTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lala----cD~ria~e~a~f~~pe~~lGl~P~~G~  235 (461)
                                  .....-.++..+..+..|+|+.|=|.+.|||+--...    +|+++|.+++.++       +.++-|+
T Consensus       384 ------------i~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pega  444 (523)
T 1on3_A          384 ------------IIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGA  444 (523)
T ss_dssp             ------------HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHH
T ss_pred             ------------HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHH
Confidence                        3344556777888999999999999999888755544    7777766666655       4444444


Q ss_pred             HHHHhcCC----CchHHHH-HHhh--cCCCCCcHHHHHHcCccceecCCCChH
Q 012534          236 SYIAAKGP----GGGSVGA-YLGM--TGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       236 ~~~L~rlv----G~~~~a~-~l~L--tG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                      ...+-+.-    ......+ ++.-  .-..-+ +..+.+.|+||.|+++.++.
T Consensus       445 a~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~-p~~~a~~g~iD~II~p~~tR  496 (523)
T 1on3_A          445 ANVIFRKEIKAADDPDAMRAEKIEEYQNAFNT-PYVAAARGQVDDVIDPADTR  496 (523)
T ss_dssp             HHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSS-HHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHhhhhhhcccCHHHHHHHHHHHHHHhhCC-HHHHHhcCCCCEeeCHHHHH
Confidence            33332210    0000111 1211  111244 78899999999999986654

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=95.04  E-value=0.11  Score=54.74  Aligned_cols=155  Identities=12%  Similarity=0.112  Sum_probs=95.8

Q ss_pred             EEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcc
Q 012534           80 ITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVK  158 (461)
Q Consensus        80 ItLnrP~~-~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (461)
                      |.=|+|.. .-+++++-.....+.++..+.. ++-+|.|.-.  ..|..|.+-.+..                       
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDt--pGf~~G~~~E~~G-----------------------  395 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDV--PGFLPGTSQEYGG-----------------------  395 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CSBCCSHHHHHTT-----------------------
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCC--CCCCCCHHHHHhh-----------------------
Confidence            33455542 3579999999999999877754 4666666554  2355554332211                       


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhc----CCeEEEcCCceEeccccccCCCCCch
Q 012534          159 EISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGH----GRYRIVTEKTLLAMPENGIGLFPDVG  234 (461)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lala----cD~ria~e~a~f~~pe~~lGl~P~~G  234 (461)
                                   .....-.++..+..+..|+|+.|=|.++|||.--...    +|+++|.+++.++       +.++-|
T Consensus       396 -------------i~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~-------Vm~peg  455 (531)
T 3n6r_B          396 -------------VIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVA-------VMGAKG  455 (531)
T ss_dssp             -------------HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHH
T ss_pred             -------------HHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEe-------cCCHHH
Confidence                         4455567788899999999999999999888744332    8888777666665       433334


Q ss_pred             HHHHH-hcCCCchHHHHHHh--hcCCCCCcHHHHHHcCccceecCCCChH
Q 012534          235 FSYIA-AKGPGGGSVGAYLG--MTGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       235 ~~~~L-~rlvG~~~~a~~l~--LtG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                      +...+ .+-+-....-.++.  +.-+.-+ +..|...|++|.|+++.+.-
T Consensus       456 aa~Il~r~~~~~~~~~~~~~~~y~~~~~~-p~~aa~~~~vD~vIdP~~TR  504 (531)
T 3n6r_B          456 ATEIIHRGDLGDPEKIAQHTADYEERFAN-PFVASERGFVDEVIQPRSTR  504 (531)
T ss_dssp             HHHHHCCTTTTSTTHHHHHHHHHHHHHSS-SHHHHHHTSSSEECCGGGHH
T ss_pred             HHHHHhcccccchhHHHHHHHHHHHHhcC-HHHHHhcCccCcccCHHHHH
Confidence            33333 22111000111111  1112234 66788999999999987765

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=93.53  E-value=0.92  Score=48.30  Aligned_cols=146  Identities=15%  Similarity=0.054  Sum_probs=94.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .-.++++-.....+.++.++. .++-+|.|.-.  ..|..|.+-.+..                                
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt--pGf~~G~~~E~~G--------------------------------  428 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT--TGIDVGNDAEKAE--------------------------------  428 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECC--CEECCSHHHHHTT--------------------------------
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC--CCCCCcHHHHHHH--------------------------------
Confidence            457999999999999987665 45677777655  3576665432211                                


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhc-----C--CeEEEcCCceEeccccccCCCCCchHHHHHh
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGH-----G--RYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  240 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lala-----c--D~ria~e~a~f~~pe~~lGl~P~~G~~~~L~  240 (461)
                          .....-.++..+..+..|+|+.|=|.+.|||. ++++     +  |+++|.+++.++       +.++-|....+-
T Consensus       429 ----i~~~gA~~~~a~a~a~vP~itvI~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~  496 (587)
T 1pix_A          429 ----LLGLGQSLIYSIQTSHIPQFEITLRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMY  496 (587)
T ss_dssp             ----HHHHHHHHHHHHHTCCCCEEEEECSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhCCCCEEEEEcCCCccHHH-HHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHH
Confidence                44555678888999999999999999998874 5555     4  887777777665       433344433332


Q ss_pred             cCC-------C--chHHH---HHHhh-cCCCCCcHHHHHHcCccceecCCCChH
Q 012534          241 KGP-------G--GGSVG---AYLGM-TGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       241 rlv-------G--~~~~a---~~l~L-tG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                      +.-       |  ....+   .++.- --+..+ +..|.+.|+||.|+++.+..
T Consensus       497 r~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~-p~~aa~~g~iD~VI~p~~tR  549 (587)
T 1pix_A          497 SRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSR-PKVCAELGLVDEIVDMNKIR  549 (587)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTS-HHHHHHHTSSSEECCTTTHH
T ss_pred             hhhhhhhhhcCCChHHHHHHHHHHHHHHHHhCC-HHHHHhcCCCccccCHHHHH
Confidence            210       0  00000   11110 011466 89999999999999987764

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=93.22  E-value=0.68  Score=48.90  Aligned_cols=141  Identities=9%  Similarity=0.050  Sum_probs=90.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE  168 (461)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      -+++++-.....+.++.++.- ++-+|.|.-..  .|..|.+-.+-.                                 
T Consensus       366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp--Gf~~G~~~E~~G---------------------------------  409 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNIT--GFMVGQKYEAGG---------------------------------  409 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC--CBCCSHHHHHTT---------------------------------
T ss_pred             CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCc--CCCCCHHHHHHH---------------------------------
Confidence            579999999999999888764 46777776653  366665432211                                 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh----cCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCC
Q 012534          169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  244 (461)
Q Consensus       169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal----acD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG  244 (461)
                         .....-.++.++..+..|+|+.|-|.++|||..-+.    .+|+++|.+++.++.       ..+-|....|-..  
T Consensus       410 ---i~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V-------mgpegaa~il~~~--  477 (555)
T 3u9r_B          410 ---IAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGV-------MGGEQAAGVLAQV--  477 (555)
T ss_dssp             ---HHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHHTTCGGGCCSEEEECTTCEEES-------SCHHHHHHHHHHH--
T ss_pred             ---HHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHhhcCccCCCCeEEEcCCcEEEc-------CCHHHHHHHHHHH--
Confidence               344456678889999999999999999887654332    368888877777664       3333333332210  


Q ss_pred             chHHHHHHhhcCCC--------------------CCcHHHHHHcCccceecCCCChH
Q 012534          245 GGSVGAYLGMTGKR--------------------ISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       245 ~~~~a~~l~LtG~~--------------------i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                         +-.++-..|+.                    .+ +..|-..|++|.|+++.+.-
T Consensus       478 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~-p~~aa~r~~vD~vIdP~~TR  530 (555)
T 3u9r_B          478 ---KREQAERAGQQLGVEEEAKIKAPILEQYEHQGH-PYYSSARLWDDGVIDPAQTR  530 (555)
T ss_dssp             ---HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHS-HHHHHHTTSSSCBCCGGGHH
T ss_pred             ---HHHHHHhccCCCCcchHHHHHHHHHHHHHHhCC-HHHHhhccccCcccChHHHH
Confidence               00111111222                    34 56667789999999887754

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=92.20  E-value=0.82  Score=48.07  Aligned_cols=154  Identities=14%  Similarity=0.158  Sum_probs=97.4

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcc
Q 012534           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVK  158 (461)
Q Consensus        80 ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (461)
                      |.=|+|. ..-+++++-.....+.++..+.. ++-+|.|.-..  .|-.|.+-.+-                        
T Consensus       336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp--Gf~~G~~~E~~------------------------  388 (530)
T 3iav_A          336 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP--GFLPGVDQEHD------------------------  388 (530)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHT------------------------
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC--CCCccHHHHHh------------------------
Confidence            4445554 23579999999999999877764 46677776542  37666653220                        


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhc-----CCeEEEcCCceEeccccccCCCCCc
Q 012534          159 EISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGH-----GRYRIVTEKTLLAMPENGIGLFPDV  233 (461)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lala-----cD~ria~e~a~f~~pe~~lGl~P~~  233 (461)
                                  ......-.++..+..+..|+|+.|-|.++|||. ++++     +|+++|.+++.++       +.++-
T Consensus       389 ------------gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~-------Vm~~e  448 (530)
T 3iav_A          389 ------------GIIRRGAKLIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIA-------VMGAQ  448 (530)
T ss_dssp             ------------THHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEE-------SSCHH
T ss_pred             ------------hHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEe-------cCCHH
Confidence                        155666678888999999999999999998766 5554     6887777776665       43333


Q ss_pred             hHHHHHhc-CCC-----chHHHHHHh--hcCCCCCcHHHHHHcCccceecCCCChH
Q 012534          234 GFSYIAAK-GPG-----GGSVGAYLG--MTGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       234 G~~~~L~r-lvG-----~~~~a~~l~--LtG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                      |+...+-+ -+-     ....-.++.  +.-+..+ +..|...|++|.|+++.+.-
T Consensus       449 gaa~il~r~~~~~~~~d~~~~~~~~~~~y~~~~~~-p~~aa~~~~vD~VIdP~~TR  503 (530)
T 3iav_A          449 GAVNILHRRTIADAGDDAEATRARLIQEYEDALLN-PYTAAERGYVDAVIMPSDTR  503 (530)
T ss_dssp             HHHHHHTSTTTSTTCTTCHHHHHHHHHHHHHHHSS-SHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhcCC-HHHHHhcCCCCcccCHHHHH
Confidence            44333322 111     000111111  1111235 67788999999999987764

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=91.75  E-value=1.5  Score=46.68  Aligned_cols=146  Identities=15%  Similarity=0.130  Sum_probs=91.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE  168 (461)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      .+++++-.....+.++..+.- ++-+|.|.-.  ..|..|.+-.+-                                  
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt--pGf~~G~~aE~~----------------------------------  429 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT--TGIDVGDEAEKA----------------------------------  429 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC--CEECCSHHHHHT----------------------------------
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC--CCCCCCHHHHHH----------------------------------
Confidence            468999999999999888764 5677777654  357777543321                                  


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcC-------CeEEEcCCceEeccccccCCCCCchHHHHHh-
Q 012534          169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHG-------RYRIVTEKTLLAMPENGIGLFPDVGFSYIAA-  240 (461)
Q Consensus       169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lalac-------D~ria~e~a~f~~pe~~lGl~P~~G~~~~L~-  240 (461)
                        ...+...+++.++..+.+|+|+.|=|.+.|||. +++++       |+++|.+++.++       +.++-|+...+- 
T Consensus       430 --Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~s-------Vm~pEgaa~Il~~  499 (588)
T 3gf3_A          430 --ELLGLGQSLIYSIENSKLPSLEITIRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYY-------VMPGETAANAMYS  499 (588)
T ss_dssp             --THHHHHHHHHHHHHHHCSCEEEEESSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEEcCCccHHHH-HHhcccccCCccceEEECCCceEE-------eCCHHHHHHHHhh
Confidence              145555678888999999999999999988765 55543       255555555554       444444433332 


Q ss_pred             cC------CCch-----HHHHHHh-hcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          241 KG------PGGG-----SVGAYLG-MTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       241 rl------vG~~-----~~a~~l~-LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      +.      .|..     ....++. ---+..+ +.-|-+.|++|.|+++.+...
T Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-p~~aA~r~~vD~VIdP~~TR~  552 (588)
T 3gf3_A          500 RKLVKAKKAGEDLQPIIGKMNDMIQMYTDKSR-PKYCTEKGMVDEIVDMTEVRP  552 (588)
T ss_dssp             HHHHHC-------CHHHHHHHHHHHHHHHTTS-HHHHHHTTSSSEECCGGGHHH
T ss_pred             hHHhhhhccccccchHHHHHHHHHHHHHHhCC-HHHHHhcCCCCeeeCHHHHHH
Confidence            11      1100     0000111 0011346 888899999999999887653

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=90.19  E-value=0.18  Score=54.89  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=32.6

Q ss_pred             CCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          186 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       186 ~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                      -..|+|++|.|.|.|||.-+...||++|+.+++.+.
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~if  280 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPII  280 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEE
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEE
Confidence            467999999999999999999999999999987543

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=87.72  E-value=0.33  Score=53.21  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=33.7

Q ss_pred             CCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          186 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       186 ~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                      ...|+|++|-|.|.|||+.++..||++|+.+++.+.+
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~l  294 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIIL  294 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEES
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEe
Confidence            4699999999999999999999999999999876654

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=81.43  E-value=2.9  Score=45.48  Aligned_cols=109  Identities=15%  Similarity=0.207  Sum_probs=73.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE  168 (461)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      ..++++-.....+.++.+++..++-+|.|.-.  ..|..|.+-.+-.                                 
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDt--pGf~~G~~aE~~G---------------------------------  491 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW--RGFSGGQRDMFNE---------------------------------  491 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCCEEECCCC--CEECCSHHHHHTT---------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCEEEEecC--CCCCCCHHHHHcc---------------------------------
Confidence            47899999999999998887345667777544  4677776533211                                 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEeC--CccchhhhHhhhcCCeEEEcCCc--eEeccccccCCCCCchHHHHH
Q 012534          169 MIEVFTAEYSLICKISEYKKPYISLMD--GVTMGFGIGISGHGRYRIVTEKT--LLAMPENGIGLFPDVGFSYIA  239 (461)
Q Consensus       169 ~~~~~~~~~~~~~~l~~~~kPvIAavn--G~a~GgG~~LalacD~ria~e~a--~f~~pe~~lGl~P~~G~~~~L  239 (461)
                         .......++.++..+..|+|+.|-  |.+.||++ +++.+.  + ..+.  .|..|...+|+.++-|+...+
T Consensus       492 ---i~k~gAkll~A~a~a~VP~itVI~RkGe~~GGA~-~am~~~--~-~ad~~~v~Awp~A~isVM~pEgaa~Il  559 (758)
T 3k8x_A          492 ---VLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSW-VVVDPT--I-NADQMEMYADVNARAGVLEPQGMVGIK  559 (758)
T ss_dssp             ---HHHHHHHHHHHHHTCCSCEEEEECTTCEEETHHH-HTTCGG--G-STTTEEEEEETTCEEESSCHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhCCCCEEEEEecCCccchHHH-HHhCcc--c-CCCHHHHhcCCCCEEEccCHHHHHHHH
Confidence               445556788899999999999998  99988776 565532  1 1222  455555555665555554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	461
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	8e-23
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	4e-16
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	2e-15
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	9e-15
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	2e-13
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	4e-13
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	4e-11
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	1e-10
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	2e-10
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	2e-10
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	2e-09
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	3e-09
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	1e-08
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	3e-08
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	9e-07

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.2 bits (236), Expect = 8e-23
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 31/186 (16%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V +I L+RPKALNA+   +  +    L+ +E DP V  + +   G +AF AG DIK  
Sbjct: 15  SSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAI-VLTGGEKAFAAGADIK-- 71

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                           +          S    I+  KKP I+ +
Sbjct: 72  ---------------------------EMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAV 104

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G  +G G  ++         EK     PE  +G  P  G +    +   G S+   + +
Sbjct: 105 NGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVL 163

Query: 255 TGKRIS 260
           TG RIS
Sbjct: 164 TGDRIS 169

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 76.3 bits (186), Expect = 4e-16
 Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 10/140 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +    +  +RP+  NA       +    LD     P V  VL+ G+GP     G      
Sbjct: 28  DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPS-PKDGGWAFCS 86

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             + +    +                 T + +            +   I    K  I L+
Sbjct: 87  GGDQRIRGRSG---------YQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLV 137

Query: 195 DGVTMGFGIGISGHGRYRIV 214
           +G   G G  +       + 
Sbjct: 138 NGWAAGGGHSLHVVCDLTLA 157

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.0 bits (180), Expect = 2e-15
 Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 17/179 (9%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           E ++       V  + L+RP+  NAMN     +      +   D   + V++ G+G    
Sbjct: 3   ESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFT 62

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISE 185
             G+D+  + ++I +                            + ++ +        I +
Sbjct: 63  S-GIDLMDMASDILQPPGDD----------------VARIAWYLRDLISRYQKTFTVIEK 105

Query: 186 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 244
             KP I+ + G  +G G+ +      R  T+     + E  +GL  DVG      K  G
Sbjct: 106 CPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIG 164

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 71.7 bits (174), Expect = 9e-15
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 28/195 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VAV+ L+ P+  N ++ +M +     LD+ E+DP V+ V++ G G             
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADL---- 62

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                   E  T+    E      +   L  ++  Y KP ++ +
Sbjct: 63  ---------------------AFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAV 101

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G  +  G G++      ++ E+  L   E  IG    +    +      G      L +
Sbjct: 102 NGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVR--AVGEKAAKDLLL 159

Query: 255 TGKRISTPSDALFAG 269
           TG+ +    +A   G
Sbjct: 160 TGRLVE-AREAKALG 173

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 2e-13
 Identities = 31/186 (16%), Positives = 71/186 (38%), Gaps = 28/186 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            G+ V+ ++R    N+++ ++       +D  +SD +V+ ++I    P  FCAG D+K  
Sbjct: 14  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK-- 71

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                       +   SE+    +   ++I  I+    P I+ +
Sbjct: 72  -------------------------ERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAI 106

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           DG+ +G G+ ++     R+      + + E  + + P  G +    +  G       +  
Sbjct: 107 DGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELI-F 165

Query: 255 TGKRIS 260
           + + + 
Sbjct: 166 SARVLD 171

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 4e-13
 Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 25/234 (10%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
               +I L  P  LNA+  +  I     L+  + +  V   +I+ S  R F +G D KG+
Sbjct: 13  GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGI 71

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                 D N                         +         +     ++ K  I  +
Sbjct: 72  AKAQGDDTNKYP----------------SETSKWVSNFVARNVYVTDAFIKHSKVLICCL 115

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 254
           +G  +G    +             +  +           G + ++     G +      M
Sbjct: 116 NGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLM 175

Query: 255 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS 308
             K           G  +             +  A  F+    +++   +    
Sbjct: 176 FNKPFK-YDIMCENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGLY 221

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 61.3 bits (147), Expect = 4e-11
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 23/141 (16%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I      AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMI-TGAEDAFCAGFYLR-- 67

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
             EI  D+                                  + +I KI   K+P ++ +
Sbjct: 68  --EIPLDK------------------GVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAI 107

Query: 195 DGVTMGFGIGISGHGRYRIVT 215
           +GV  G G+GIS      I  
Sbjct: 108 NGVAAGGGLGISLASDMAICA 128

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           + V VITLD P   N  +  ++   K  L    +D  V+ V++ G   R+F AG 
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGG 62

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 75  NGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           +G+  +  D + +++N  N     + +  +D  ++D  VK V++            
Sbjct: 15  SGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGAD 70

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 25/163 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I  +RPK  NA+N +M  +    L     D  +    +       + +G D+   
Sbjct: 11  DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIIT--VLTGNGDYYSSGNDLT-- 66

Query: 135 VAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM 194
                                +  +I       +           +    ++ KP I+++
Sbjct: 67  ---------------------NFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVV 105

Query: 195 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY 237
           +G  +G  + + G       +++     P + +G  P+   SY
Sbjct: 106 NGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSY 148

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
            GVAV+    P  +N+++L+   +    L++ E+D   + V++    P  F AG+D
Sbjct: 12  AGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLD 66

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 59  MAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           +A+  A    +       GV  IT  R + LNAM   +         + E+   V+ VL+
Sbjct: 1   LASLEARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLL 59

Query: 118 EGSGPRAFCAGM 129
            G G      G 
Sbjct: 60  RGEGGVFSAGGS 71

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 5/40 (12%), Positives = 10/40 (25%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKC 114
            GV ++T+               +      +   D   K 
Sbjct: 21  GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKV 60

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           N VAVI  +  + LNA++          L +         +L   SG + F AG DI 
Sbjct: 12  NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIH 69

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 9e-07
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 75  NGVAVITL-DRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           +G   I L  R    NA+N ++  +  + L+   +D   K VL   +G    C   
Sbjct: 10  DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCCGLD 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	461
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.9
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.85
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.66
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.63
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.48
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.28
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.08
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.82
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.68
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.5
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.49
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.18
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.12
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.93
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	94.92
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	93.92
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	93.47
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	93.27
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	92.65

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.7e-56  Score=432.75  Aligned_cols=256  Identities=24%  Similarity=0.315  Sum_probs=228.3

Q ss_pred             CccceEEEEe--cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534           64 AEEFVKGNVH--PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        64 ~~~~i~~~~~--~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      .|++|+++++  +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|++++...... 
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~-   79 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNRTFQ-   79 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTCCHH-
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccc-ccccccchhhhhhccchh-
Confidence            4788999973  468999999999999999999999999999999999999999999997 899999999987531110 


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                                                  ..+...+..++..+.++||||||+|||+|+|||++|+++||||||+++++|+
T Consensus        80 ----------------------------~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~  131 (260)
T d1mj3a_          80 ----------------------------DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFG  131 (260)
T ss_dssp             ----------------------------HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEE
T ss_pred             ----------------------------hhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEE
Confidence                                        1133334456678999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|++++|++++|.+ ++++|+++|++|+ |+||+++|||+++++.+++.+.+.                
T Consensus       132 ~pe~~~Gl~p~~~~~~~l~~~ig~~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~~~~~a~----------------  193 (260)
T d1mj3a_         132 QPEILLGTIPGAGGTQRLTRAVGKS-LAMEMVLTGDRIS-AQDAKQAGLVSKIFPVETLVEEAI----------------  193 (260)
T ss_dssp             CGGGGGTCCCCSSTTTHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECTTTHHHHHH----------------
T ss_pred             CchhccCcCCcccHHHHHHHHhCHH-HHHHHHHcCcccC-chhhccCCCceeeecccccccccc----------------
Confidence            9999999999999999999999997 9999999999999 999999999999999998864222                


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                          ++++    +++..+|.+++.+|++++..
T Consensus       194 ----------------------------------------------------~~a~----~i~~~~~~a~~~~K~~l~~~  217 (260)
T d1mj3a_         194 ----------------------------------------------------QCAE----KIANNSKIIVAMAKESVNAA  217 (260)
T ss_dssp             ----------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHGG
T ss_pred             ----------------------------------------------------cccc----cccchhhHHHHHHHHHHHHH
Confidence                                                                3333    79999999999999999988


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      .         ..+++++++.|.+.+..++.++|++||+++|+ +| |+|+|+.
T Consensus       218 ~---------~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFl-eK-R~P~f~~  259 (260)
T d1mj3a_         218 F---------EMTLTEGNKLEKKLFYSTFATDDRREGMSAFV-EK-RKANFKD  259 (260)
T ss_dssp             G---------SSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHH-TT-SCCCCCC
T ss_pred             H---------hCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-CC-CCCCCCC
Confidence            7         57899999999999999999999999999999 78 8999974

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-55  Score=429.52  Aligned_cols=258  Identities=18%  Similarity=0.254  Sum_probs=232.8

Q ss_pred             EEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCC
Q 012534           70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK  149 (461)
Q Consensus        70 ~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (461)
                      ++.+++||++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|.|++.+.....          
T Consensus         9 l~~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~----------   78 (266)
T d1hzda_           9 LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS----------   78 (266)
T ss_dssp             CCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH----------
T ss_pred             EEEecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccc----------
Confidence            3344678999999999999999999999999999999999999999999998789999999998764211          


Q ss_pred             CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCC
Q 012534          150 VPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL  229 (461)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl  229 (461)
                                       .....+....+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+
T Consensus        79 -----------------~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~  141 (266)
T d1hzda_          79 -----------------SEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAI  141 (266)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTC
T ss_pred             -----------------hhhhhhhhHHHHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceee
Confidence                             123346666778889999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcC
Q 012534          230 FPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS  309 (461)
Q Consensus       230 ~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~  309 (461)
                      +|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                         
T Consensus       142 ~p~~g~~~~l~~~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~~-------------------------  194 (266)
T d1hzda_         142 IPGGGGTQRLPRAIGMS-LAKELIFSARVLD-GKEAKAVGLISHVLEQNQEGDAA-------------------------  194 (266)
T ss_dssp             CCCSSHHHHHHHHHCHH-HHHHHHHHTCEEE-HHHHHHHTSCSEEECCCTTSCHH-------------------------
T ss_pred             cCCccceeeehhhhHHH-HHHhhhccCCccC-HHHhhcccccccccChhhhhhHH-------------------------
Confidence            99999999999999998 9999999999999 99999999999999998875321                         


Q ss_pred             CCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCc
Q 012534          310 DPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTD  389 (461)
Q Consensus       310 ~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~  389 (461)
                                                                 .++|.+++++++.+||.|++.+|++++...       
T Consensus       195 -------------------------------------------~~~a~~~a~~i~~~~p~a~~~~K~~l~~~~-------  224 (266)
T d1hzda_         195 -------------------------------------------YRKALDLAREFLPQGPVAMRVAKLAINQGM-------  224 (266)
T ss_dssp             -------------------------------------------HHHHHHHHHTTTTSCHHHHHHHHHHHHHHH-------
T ss_pred             -------------------------------------------HHHHHHHHHhcccCChHHHHHHHHHHHHHh-------
Confidence                                                       255666666899999999999999999887       


Q ss_pred             cccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534          390 NELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA  435 (461)
Q Consensus       390 ~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~  435 (461)
                        ..++.++++.|...+..++.++|++||++||+ +| |+|+|+++
T Consensus       225 --~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~-eK-R~P~f~Gk  266 (266)
T d1hzda_         225 --EVDLVTGLAIEEACYAQTIPTKDRLEGLLAFK-EK-RPPRYKGE  266 (266)
T ss_dssp             --TSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHT-TT-SCCCCCCC
T ss_pred             --cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-CC-CCCCCCCC
Confidence              57899999999999999999999999999999 78 89999985

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-54  Score=420.80  Aligned_cols=257  Identities=18%  Similarity=0.217  Sum_probs=231.0

Q ss_pred             ccceEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           65 EEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLn-rP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      |+.|.+++ +++|++|+|| ||+++|+||.+|+.+|.++|+.++.|+ +++|||||.| ++||+|+|++++.......  
T Consensus         1 y~~i~v~~-~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d~-~~~vvl~g~g-~~FsaG~Dl~~~~~~~~~~--   75 (258)
T d2fw2a1           1 YRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAG-SVFCCGLDFGYFVRHLRND--   75 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECS-SCSBCCBCHHHHHHHHHHC--
T ss_pred             CceEEEEE-ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCc-cccccccccchhhhccccc--
Confidence            57789987 7999999997 799999999999999999999999874 6999999998 8999999999987644322  


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                           ......++...++.++..+.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        76 ---------------------~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~p  134 (258)
T d2fw2a1          76 ---------------------RNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTP  134 (258)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECC
T ss_pred             ---------------------ccchhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeec
Confidence                                 11123346667778889999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.                  
T Consensus       135 e~~~Gl~p~~g~~~~l~r~ig~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------  194 (258)
T d2fw2a1         135 YTTFGQSPDGCSSITFPKMMGKA-SANEMLIAGRKLT-AREACAKGLVSQVFLTGTFTQEVM------------------  194 (258)
T ss_dssp             HHHHTCCCCTTHHHHHHHHHCHH-HHHHHHTTCCEEE-HHHHHHTTSCSEEECSTTHHHHHH------------------
T ss_pred             cccccccccccccccchhhcCcc-ccchhhccCcccc-cccccccccccccccccccccccc------------------
Confidence            99999999999999999999997 9999999999999 999999999999999998875322                  


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        +||+    +|++.||.+++.+|++++... 
T Consensus       195 --------------------------------------------------~~a~----~i~~~~~~a~~~~K~~~~~~~-  219 (258)
T d2fw2a1         195 --------------------------------------------------IQIK----ELASYNAIVLEECKALVRCNI-  219 (258)
T ss_dssp             --------------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHHHH-
T ss_pred             --------------------------------------------------hhhh----hhhhhhHHHHHHHHHHHHHhh-
Confidence                                                              4454    799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW  432 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w  432 (461)
                              ..+++++++.|.+.+..++.++|++|||++|+ +| |+|+|
T Consensus       220 --------~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~-EK-R~p~f  258 (258)
T d2fw2a1         220 --------KLELEQANERECEVLRKIWSSAQGIESMLKYV-EN-KIDEF  258 (258)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-HS-SCCCC
T ss_pred             --------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-CC-CCCCC
Confidence                    45799999999999999999999999999999 68 89998

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.5e-54  Score=419.07  Aligned_cols=271  Identities=19%  Similarity=0.248  Sum_probs=233.0

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      +|+.+.++..+++|++||||||+++|+||.+|+.+|.++|+.+++|+++++|||||.| ++||+|+|+.++.........
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~-~~F~aG~dl~~~~~~~~~~~~   79 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPG   79 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCC
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccCccHHHhhhccccccc
Confidence            3788888766789999999999999999999999999999999999999999999997 899999999999865433211


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                      ..                ..........+......++..+.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        80 ~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~p  143 (275)
T d1dcia_          80 DD----------------VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVK  143 (275)
T ss_dssp             SS----------------HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECC
T ss_pred             cc----------------ccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccch
Confidence            10                01111223345555667888999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|+++++++++|....+++++++|+.++ |+||+++||||+|+|+++...                     
T Consensus       144 e~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~-a~eA~~~Glv~~v~~~~~~l~---------------------  201 (275)
T d1dcia_         144 EVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMM-ADEALDSGLVSRVFPDKDVML---------------------  201 (275)
T ss_dssp             GGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEE-HHHHHHHTSSSEEESSHHHHH---------------------
T ss_pred             hcccccccccccccccccccccccccccccccccccc-hhhhccCCCceeeeehhhhhh---------------------
Confidence            9999999999999999999997524568999999999 999999999999998755331                     


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                        +.+.++++.|++++|.|++.+|+.+++.. 
T Consensus       202 --------------------------------------------------~~~~~~a~~i~~~~p~a~~~~K~~l~~~~-  230 (275)
T d1dcia_         202 --------------------------------------------------NAAFALAADISSKSPVAVQGSKINLIYSR-  230 (275)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHH-
T ss_pred             --------------------------------------------------hcccccccccccccHHHHHHHHHHHHHHh-
Confidence                                                              22233344899999999999999999887 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                              ..+++++++.|.+.+..++.++|++|||+||+ +| |+|+|..
T Consensus       231 --------~~~l~~~~~~e~~~~~~~~~~~d~~Egi~Afl-eK-R~pk~~~  271 (275)
T d1dcia_         231 --------DHSVDESLDYMATWNMSMLQTQDIIKSVQAAM-EK-KDSKSIT  271 (275)
T ss_dssp             --------HSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHH-TT-CCGGGCC
T ss_pred             --------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-CC-CCCCCCC
Confidence                    56899999999999999999999999999999 78 8999975

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-54  Score=422.05  Aligned_cols=256  Identities=18%  Similarity=0.179  Sum_probs=229.1

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .|+.|.++..++||++|+| ||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......   
T Consensus         7 ~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g-~~FsaG~Dl~~~~~~~~~---   81 (263)
T d1wz8a1           7 RYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFGLIEEMRAS---   81 (263)
T ss_dssp             HCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHHHHHHHHHC---
T ss_pred             CCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEeccc-ccccccchhhhhhhhccc---
Confidence            4788999887789999999 89999999999999999999999999999999999998 899999999998754211   


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                            .+....++...++++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        82 ----------------------~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~p  139 (263)
T d1wz8a1          82 ----------------------HEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDG  139 (263)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECC
T ss_pred             ----------------------ccccccchhhhhHHHHHhhhhhcceeeecccccccccccccccccccccccccccccc
Confidence                                  1123446677778899999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|+++++++++|.. ++++|+++|+.++ |+||+++||||+|||++++.+                     
T Consensus       140 e~~~Gl~p~~~~~~~l~~~~G~~-~a~~l~l~g~~i~-a~eA~~~Glv~~vv~~~~l~~---------------------  196 (263)
T d1wz8a1         140 HLRLGVAAGDHAVLLWPLLVGMA-KAKYHLLLNEPLT-GEEAERLGLVALAVEDEKVYE---------------------  196 (263)
T ss_dssp             HHHHTSCCTTTHHHHTHHHHCHH-HHHHHHHHTCCEE-HHHHHHHTSSSEEECGGGHHH---------------------
T ss_pred             ccccccccccccccccccccccc-hhhhhcccccccc-hhHHHhcCCcccccchhhhhH---------------------
Confidence            99999999999999999999998 9999999999999 999999999999999888764                     


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                         .+.+.+++|+++||.+++.+|+++++.. 
T Consensus       197 ---------------------------------------------------~a~~~a~~la~~~~~al~~~K~~l~~~~-  224 (263)
T d1wz8a1         197 ---------------------------------------------------KALEVAERLAQGPKEALHHTKHALNHWY-  224 (263)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHTSCHHHHHHHHHHHHHHH-
T ss_pred             ---------------------------------------------------HHHHHHHHhhccHHHHHHHHHHHHHHHH-
Confidence                                                               2233334799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW  432 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w  432 (461)
                              ... .+.++.|.......+.++|++||++||+ +| |+|+|
T Consensus       225 --------~~~-~~~~~~e~~~~~~~~~s~d~~Egi~Af~-eK-R~P~f  262 (263)
T d1wz8a1         225 --------RSF-LPHFELSLALEFLGFSGKELEEGLKALK-EK-RPPEF  262 (263)
T ss_dssp             --------HTT-HHHHHHHHHHHHHGGGSHHHHHHHHHHH-TT-SCCCC
T ss_pred             --------hCh-HHHHHHHHHHHHHHccCHHHHHHHHHHh-CC-CCCCC
Confidence                    333 4568999999999999999999999999 78 99999

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-54  Score=420.62  Aligned_cols=259  Identities=19%  Similarity=0.246  Sum_probs=220.7

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEec-CCCccccCCChhhHHHHhhhc
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS-GPRAFCAGMDIKGVVAEIQKD  141 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~-G~~~FcaG~Dl~~~~~~~~~~  141 (461)
                      |+|++|.++. +|+|++||||||+++|+||.+|+.+|.++|+++++ +++++|||+|. |+++||+|+||+++.......
T Consensus         1 M~~~~i~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~   78 (261)
T d1ef8a_           1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP   78 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-----CT
T ss_pred             CCCCEEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCccc
Confidence            4678999998 79999999999999999999999999999999985 57999999985 458999999999986532111


Q ss_pred             CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534          142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  221 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~  221 (461)
                      .  .                          +...++.++..|.++||||||+|||+|+|||++|+++||+||++++++|+
T Consensus        79 ~--~--------------------------~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~  130 (261)
T d1ef8a_          79 L--S--------------------------YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFS  130 (261)
T ss_dssp             T--C--------------------------TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEE
T ss_pred             c--c--------------------------cccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHh
Confidence            0  0                          22334567888999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV  301 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~  301 (461)
                      +||+++|++|++|+++++++++|.. +++++++||+.|+ |+||+++||||++|+++++.+                   
T Consensus       131 ~pe~~~Gl~~~~~~~~~l~r~~g~~-~a~~~~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~-------------------  189 (261)
T d1ef8a_         131 MTPVNLGVPYNLVGIHNLTRDAGFH-IVKELIFTASPIT-AQRALAVGILNHVVEVEELED-------------------  189 (261)
T ss_dssp             CCHHHHTCCCCHHHHHTTSSSSCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECHHHHHH-------------------
T ss_pred             hhhcccccccccccccccccccCcc-ccccccccCceEc-HHHHHHcCCcceeeechhhhh-------------------
Confidence            9999999999999999999999998 9999999999999 999999999999999877653                   


Q ss_pred             HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534          302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV  381 (461)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~  381 (461)
                                                                           .+.+++++|+..||.+++.+|++++..
T Consensus       190 -----------------------------------------------------~a~~~a~~la~~~~~a~~~~K~~l~~~  216 (261)
T d1ef8a_         190 -----------------------------------------------------FTLQMAHHISEKAPLAIAVIKEELRVL  216 (261)
T ss_dssp             -----------------------------------------------------HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------hhHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                                                                 233334489999999999999999986


Q ss_pred             hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      ...       .......++.+......++.++|++|||+||+ +| |+|+|++
T Consensus       217 ~~~-------~~~~~~~~e~~~~~~~~~~~s~D~~Egi~Afl-eK-R~P~f~G  260 (261)
T d1ef8a_         217 GEA-------HTMNSDEFERIQGMRRAVYDSEDYQEGMNAFL-EK-RKPNFVG  260 (261)
T ss_dssp             HHC-------CCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCCC
T ss_pred             Hhc-------CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHh-CC-CCCcCCC
Confidence            521       22344566666777777899999999999999 78 8999986

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=5.2e-54  Score=419.29  Aligned_cols=264  Identities=22%  Similarity=0.270  Sum_probs=233.2

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      |+.|.+++ +|||++||||||+++|+||.+|+.+|.++++.+++|+++++|||||.| ++||+|+|++++......    
T Consensus         2 y~~i~~~i-~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g-~~F~aG~Dl~~~~~~~~~----   75 (269)
T d1nzya_           2 YEAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGV----   75 (269)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHH----
T ss_pred             CCceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCc-ccccchhhHHHHhhcccc----
Confidence            67799988 799999999999999999999999999999999999999999999997 899999999987421100    


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                        ..............+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        76 ------------------~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~  137 (269)
T d1nzya_          76 ------------------AGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW  137 (269)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCH
T ss_pred             ------------------cchhhHHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccc
Confidence                              01112223344455678889999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      .++|+.|++|+++++++++|.. +++++++||+.|+ |+||+++||||+||+++++.+.+.                   
T Consensus       138 ~~~g~~~~~g~~~~l~~~ig~~-~a~~l~ltg~~i~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------  196 (269)
T d1nzya_         138 HTIGIGNDTATSYSLARIVGMR-RAMELMLTNRTLY-PEEAKDWGLVSRVYPKDEFREVAW-------------------  196 (269)
T ss_dssp             HHHTCCCCTTHHHHHHHHHHHH-HHHHHHHHCCCBC-HHHHHHHTSCSCEECHHHHHHHHH-------------------
T ss_pred             cccccccccccccccccccChh-hhhhccccccccc-hhHHHHcCCccccccccccccchh-------------------
Confidence            9999999999999999999997 9999999999999 999999999999999877654222                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       +||+    +|++.||.+++.+|+.+++..  
T Consensus       197 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  221 (269)
T d1nzya_         197 -------------------------------------------------KVAR----ELAAAPTHLQVMAKERFHAGW--  221 (269)
T ss_dssp             -------------------------------------------------HHHH----HHHHSCHHHHHHHHHHHHHHT--
T ss_pred             -------------------------------------------------hhhh----hhhhhhHHHHHHHHHHHHHHH--
Confidence                                                             4554    788999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCc
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASL  437 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~  437 (461)
                             ..+++++++.|.+.+...+.++|++|||++|+ +| |+|+|.+..|
T Consensus       222 -------~~~l~~~~~~e~~~~~~~~~~~~~~e~v~afl-ek-rkp~~~~~~~  265 (269)
T d1nzya_         222 -------MQPVEECTEFEIQNVIASVTHPHFMPCLTRFL-DG-HRADRPQVEL  265 (269)
T ss_dssp             -------TSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHH-TT-CCTTCCSSCC
T ss_pred             -------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-CC-CCCCcCCCCC
Confidence                   57899999999999999999999999999999 78 8999987654

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.9e-53  Score=408.79  Aligned_cols=248  Identities=25%  Similarity=0.354  Sum_probs=222.7

Q ss_pred             cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCC
Q 012534           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLK  153 (461)
Q Consensus        74 ~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (461)
                      +|+|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| +.||+|+|++++.......            
T Consensus         6 ~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g-~~f~aG~dl~~~~~~~~~~------------   72 (253)
T d1uiya_           6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTELG------------   72 (253)
T ss_dssp             CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTTSC------------
T ss_pred             eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-ccccccchhHHhhhccccC------------
Confidence            578999999999999999999999999999999999999999999998 8999999999987533211            


Q ss_pred             CCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCc
Q 012534          154 CGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV  233 (461)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~  233 (461)
                                  ......++...+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++| +
T Consensus        73 ------------~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~  139 (253)
T d1uiya_          73 ------------AEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-A  139 (253)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-H
T ss_pred             ------------cccccchhhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-c
Confidence                        122334566677888999999999999999999999999999999999999999999999999877 5


Q ss_pred             hHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCC
Q 012534          234 GFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG  313 (461)
Q Consensus       234 G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~  313 (461)
                      |++++|++++|.. ++++|+|||+.++ |+||+++||||+|+|++++.+.                              
T Consensus       140 ~~~~~l~~~~g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~~~~~------------------------------  187 (253)
T d1uiya_         140 LVSVILVRAVGEK-AAKDLLLTGRLVE-AREAKALGLVNRIAPPGKALEE------------------------------  187 (253)
T ss_dssp             HHHHHHHHHSCHH-HHHHHHHHCCEEE-HHHHHHHTSCSEEECTTCHHHH------------------------------
T ss_pred             cchhhhhcccCHH-HHHHHhhcCcCCC-HHHHHHhCCCcccccccccchh------------------------------
Confidence            6788999999998 9999999999999 9999999999999999998642                              


Q ss_pred             CchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccC
Q 012534          314 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS  393 (461)
Q Consensus       314 ~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~  393 (461)
                                                                +.++++++.+.||.++..+|++++...         ..
T Consensus       188 ------------------------------------------a~~~a~~~~~~~~~a~~~~K~~l~~~~---------~~  216 (253)
T d1uiya_         188 ------------------------------------------AKALAEEVAKNAPTSLRLTKELLLALP---------GM  216 (253)
T ss_dssp             ------------------------------------------HHHHHHHHHHSCHHHHHHHHHHHHHGG---------GS
T ss_pred             ------------------------------------------HHHHHHhhcccchHHHHHHHHHHHHhh---------cC
Confidence                                                      233334799999999999999999876         57


Q ss_pred             CHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534          394 KLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW  432 (461)
Q Consensus       394 ~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w  432 (461)
                      +++++++.|.+.+..++.++|++||++||+ +| |+|+|
T Consensus       217 ~l~~~l~~e~~~~~~~~~s~d~~egi~af~-eK-R~P~f  253 (253)
T d1uiya_         217 GLEDGFRLAALANAWVRETGDLAEGIRAFF-EK-RPPRF  253 (253)
T ss_dssp             CHHHHHHHHHHHHHHGGGCHHHHHHHHHHH-TT-SCCCC
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-CC-CCCCC
Confidence            899999999999999999999999999999 78 89999

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.5e-52  Score=410.50  Aligned_cols=270  Identities=18%  Similarity=0.206  Sum_probs=215.5

Q ss_pred             CCccceEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCccccCCChhhHH
Q 012534           63 GAEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSG------PRAFCAGMDIKGVV  135 (461)
Q Consensus        63 ~~~~~i~~~~~-~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G------~~~FcaG~Dl~~~~  135 (461)
                      +.++.|+++.. ++||++||||||+++||||.+|+.+|.++++.++.|+++|+|||||.|      ++.||+|.|++...
T Consensus        15 ~~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~   94 (297)
T d1q52a_          15 DDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRG   94 (297)
T ss_dssp             TTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC------
T ss_pred             CCCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhc
Confidence            45677888763 689999999999999999999999999999999999999999999974      35788888988765


Q ss_pred             HHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEc
Q 012534          136 AEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT  215 (461)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~  215 (461)
                      ..........                .....+.........+.++..|.++||||||+|||+|+|||++|+++||+||++
T Consensus        95 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~  158 (297)
T d1q52a_          95 RSGYQYASGD----------------TADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLAS  158 (297)
T ss_dssp             ---------------------------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEE
T ss_pred             cccccccccc----------------ccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccc
Confidence            4321111000                000111122234445678888999999999999999999999999999999998


Q ss_pred             CC-ceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCC
Q 012534          216 EK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE  294 (461)
Q Consensus       216 e~-a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~  294 (461)
                      ++ ++|++||+++|++|++|++++|++++|.+ +++++++||+.++ |+||+++||||+|||++++.+.+.         
T Consensus       159 ~~~~~f~~pe~~~Gl~p~~~~~~~L~r~iG~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~el~~~~~---------  227 (297)
T d1q52a_         159 REYARFKQTDADVGSFDGGYGSAYLARQVGQK-FAREIFFLGRTYT-AEQMHQMGAVNAVAEHAELETVGL---------  227 (297)
T ss_dssp             TTTCEEECCGGGGTCCCCSTTTHHHHHHHCHH-HHHHHHHHCCEEC-HHHHHHHTSCSEEECGGGHHHHHH---------
T ss_pred             cccccceeeeeccccccccccccccccccCcc-ceeeccccccccc-hHhhhhhccccccCchHHhhHHHH---------
Confidence            75 57999999999999999999999999998 9999999999999 999999999999999988864222         


Q ss_pred             ChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHH
Q 012534          295 DPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLT  374 (461)
Q Consensus       295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~t  374 (461)
                                                                                 ++|+    ++++.||.+++.+
T Consensus       228 -----------------------------------------------------------~~a~----~l~~~~~~a~~~~  244 (297)
T d1q52a_         228 -----------------------------------------------------------QWAA----EINAKSPQAQRML  244 (297)
T ss_dssp             -----------------------------------------------------------HHHH----HHHTSCHHHHHHH
T ss_pred             -----------------------------------------------------------HHhh----hhccCCHHHHHHH
Confidence                                                                       4444    7999999999999


Q ss_pred             HHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534          375 QKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP  434 (461)
Q Consensus       375 k~~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~  434 (461)
                      |++++...          ..+.+....|.+.+..++.++|++|||+||+ +| |+|+|++
T Consensus       245 K~~~~~~~----------~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~-eK-R~P~f~~  292 (297)
T d1q52a_         245 KFAFNLLD----------DGLVGQQLFAGEATRLAYMTDEAVEGRDAFL-QK-RPPDWSP  292 (297)
T ss_dssp             HHHHHHTT----------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT-SCCCCTT
T ss_pred             HHHHHHhh----------cChHHHHHHHHHHHHHHhcCHHHHHHHHHHh-CC-CCCCCCC
Confidence            99998754          3566667778888888999999999999999 78 9999987

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-49  Score=380.73  Aligned_cols=243  Identities=19%  Similarity=0.231  Sum_probs=211.7

Q ss_pred             ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~  144 (461)
                      |++|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+.+ +||++|.| ++||+|+|++++......    
T Consensus         2 ~~~i~~~~-~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g-~~F~aG~Dl~~~~~~~~~----   74 (245)
T d2f6qa1           2 FETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPPG----   74 (245)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCTT----
T ss_pred             cceEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCC-ccccCCccchhhhccccc----
Confidence            67899997 789999999999999999999999999999999999876 89999987 899999999998642110    


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534          145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  224 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe  224 (461)
                                         .............+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus        75 -------------------~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe  135 (245)
T d2f6qa1          75 -------------------GVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPF  135 (245)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCT
T ss_pred             -------------------ccccccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEeccc
Confidence                               0112233344555678889999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534          225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  304 (461)
Q Consensus       225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l  304 (461)
                      +++|++|++|++++|++++|.. ++++++++|+.++ |+||+++||||+|||++++.+.+.                   
T Consensus       136 ~~~G~~p~~g~~~~l~~~~g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------  194 (245)
T d2f6qa1         136 SHLGQSPEGCSSYTFPKIMSPA-KATEMLIFGKKLT-AGEACAQGLVTEVFPDSTFQKEVW-------------------  194 (245)
T ss_dssp             GGGTCCCCTTHHHHHHHHHCHH-HHHHHHTTCCCEE-HHHHHHTTSCSEEECTTTHHHHHH-------------------
T ss_pred             ccCCCCccccchhhcccccccc-hhhhhcccccccc-cccccccccccccCCcchHHHHHH-------------------
Confidence            9999999999999999999997 9999999999999 999999999999999999875322                   


Q ss_pred             HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534          305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA  384 (461)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~  384 (461)
                                                                       +||+    +|+++||.|++.+|++++...  
T Consensus       195 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--  219 (245)
T d2f6qa1         195 -------------------------------------------------TRLK----AFAKLPPNALRISKEVIRKRE--  219 (245)
T ss_dssp             -------------------------------------------------HHHH----HHTTSCHHHHHHHHHHHHGGG--
T ss_pred             -------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhh--
Confidence                                                             4555    799999999999999999876  


Q ss_pred             cCCCccccCCHHHHHHHHHHHHHhhcCCCcHH
Q 012534          385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFA  416 (461)
Q Consensus       385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~  416 (461)
                             ...+.+.++.|.+.+..++.++|++
T Consensus       220 -------~~~l~~~~~~e~~~~~~~~~s~d~~  244 (245)
T d2f6qa1         220 -------REKLHAVNAEECNVLQGRWLSDECT  244 (245)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             -------hcCHHHHHHHHHHHHHHHhcCcccC
Confidence                   4578999999999999999999975

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2.1e-48  Score=386.90  Aligned_cols=292  Identities=16%  Similarity=0.196  Sum_probs=229.1

Q ss_pred             ccceEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           65 EEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        65 ~~~i~~~~~~~~V~~ItLn-rP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      ++.|.++..++||++|+|| ||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........ 
T Consensus         5 ~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~-   82 (310)
T d1wdka4           5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DVFIVGADITEFVENFKLPD-   82 (310)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SSSBBCCCHHHHHHHTTSCH-
T ss_pred             CceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccchhhhhhhhhcccccc-
Confidence            4678888768899999998 89999999999999999999999999999999999997 89999999999876432110 


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p  223 (461)
                                             ..........+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus        83 -----------------------~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~p  139 (310)
T d1wdka4          83 -----------------------AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLP  139 (310)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECG
T ss_pred             -----------------------hhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceeccc
Confidence                                   112223344567888999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. +++++++||+.++ |+||+++||||++||++++.+.+.++++............. 
T Consensus       140 e~~~Gl~P~~gg~~~L~r~iG~~-~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~-  216 (310)
T d1wdka4         140 EVKLGIYPGFGGTVRLPRLIGVD-NAVEWIASGKENR-AEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKR-  216 (310)
T ss_dssp             GGGGTCCCCSSHHHHHHHHHCHH-HHHHHHHHCCCEE-HHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHH-
T ss_pred             ccccCCCccccchhhhhhhhhhh-hhhhhhccccccC-HHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhh-
Confidence            99999999999999999999998 9999999999999 99999999999999999999888887665322211100000 


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                        .........+ .++...             ..+..+..+.........+...+.+.++.+. 
T Consensus       217 ------------------~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~pA~~~~l~~v~~~~-  263 (310)
T d1wdka4         217 ------------------QPKLEKLKLN-AIEQMM-------------AFETAKGFVAGQAGPNYPAPVEAIKTIQKAA-  263 (310)
T ss_dssp             ------------------GGGGSCCSCC-HHHHHH-------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred             ------------------hhhccccccc-chhhhH-------------HHHHhhhhhhhhccCCChHHHHHHHHHHHHh-
Confidence                              0000000000 111000             0011111222334445556667788888876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK  426 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K  426 (461)
                              ..+++++|+.|.+.+.+++.+++.++++++|+ .|
T Consensus       264 --------~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~-~k  297 (310)
T d1wdka4         264 --------NFGRDKALEVEAAGFAKLAKTSASNCLIGLFL-ND  297 (310)
T ss_dssp             --------TCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-HH
T ss_pred             --------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-hh
Confidence                    67999999999999999999999999999999 45

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=2.8e-48  Score=370.31  Aligned_cols=226  Identities=21%  Similarity=0.197  Sum_probs=196.3

Q ss_pred             EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCC
Q 012534           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (461)
Q Consensus        69 ~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (461)
                      +++.++|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++......        
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~--------   73 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRS--------   73 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CH--------
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccc--------
Confidence            455568899999999999999999999999999999999999999999999887899999999998752211        


Q ss_pred             CCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccC
Q 012534          149 KVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG  228 (461)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lG  228 (461)
                                        .....+....+.++..+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|
T Consensus        74 ------------------~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G  135 (230)
T d2a7ka1          74 ------------------EDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHG  135 (230)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGT
T ss_pred             ------------------cccccchhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhcccccc
Confidence                              12334666777888999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhc
Q 012534          229 LFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS  308 (461)
Q Consensus       229 l~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~  308 (461)
                      ++|++|+ .+|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+                        
T Consensus       136 ~~p~~g~-~~l~~~iG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a------------------------  188 (230)
T d2a7ka1         136 IGCSVGA-AILGFTHGFS-TMQEIIYQCQSLD-APRCVDYRLVNQVVESSALLDAA------------------------  188 (230)
T ss_dssp             CCCHHHH-HHHHHHHCHH-HHHHHHHHCCCBC-HHHHHHHTCCSEEECHHHHHHHH------------------------
T ss_pred             ccccccc-cccccccccc-cccccccccccch-HHHHHHhhhcccCCChHHHHHHH------------------------
Confidence            9998776 5799999997 9999999999999 99999999999999987665422                        


Q ss_pred             CCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCC
Q 012534          309 SDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKT  388 (461)
Q Consensus       309 ~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~  388 (461)
                                                                  .+||+    +|++.||.+++.+|+++++..      
T Consensus       189 --------------------------------------------~~~a~----~ia~~~~~a~~~~K~~l~~~~------  214 (230)
T d2a7ka1         189 --------------------------------------------ITQAH----VMASYPASAFINTKRAVNKPF------  214 (230)
T ss_dssp             --------------------------------------------HHHHH----HHHTSCHHHHHHHHHHHHHHH------
T ss_pred             --------------------------------------------HHHHH----HHHcCCHHHHHHHHHHHHHHH------
Confidence                                                        14444    799999999999999999876      


Q ss_pred             ccccCCHHHHHHHHHH
Q 012534          389 DNELSKLSGVMKYEYR  404 (461)
Q Consensus       389 ~~~~~~l~~~l~~E~~  404 (461)
                         ...+++.++.|..
T Consensus       215 ---~~~l~~~~~~~~a  227 (230)
T d2a7ka1         215 ---IHLLEQTRDASKA  227 (230)
T ss_dssp             ---HHHHHHHHHHHHH
T ss_pred             ---hccHHHHHHHHHH
Confidence               3467777766644

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-48  Score=374.04  Aligned_cols=233  Identities=18%  Similarity=0.138  Sum_probs=196.3

Q ss_pred             CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (461)
Q Consensus        64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  143 (461)
                      .++.|.++. +|+|++||||||+++|+||.+|+.+|.++|+.+++|+++++|||+|.| ++||+|+||+++.........
T Consensus         3 ~~e~i~~~~-~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~~   80 (266)
T d1pjha_           3 QNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDTN   80 (266)
T ss_dssp             CBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC-------
T ss_pred             CCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccchhHHHHHhccccccc
Confidence            467899988 799999999999999999999999999999999999999999999998 899999999998753322111


Q ss_pred             CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEc-CCceEec
Q 012534          144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAM  222 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~-e~a~f~~  222 (461)
                      ..                ..........++...+.++..+.++||||||+|||+|+|||++|+++||||||+ ++++|++
T Consensus        81 ~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~  144 (266)
T d1pjha_          81 KY----------------PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLY  144 (266)
T ss_dssp             CC----------------SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEEC
T ss_pred             cc----------------cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccc
Confidence            00                001223344566677778889999999999999999999999999999999996 5678999


Q ss_pred             cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534          223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA  302 (461)
Q Consensus       223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~  302 (461)
                      ||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+||+.+++..  +++.              
T Consensus       145 pe~~lGl~p~~g~~~~l~r~~g~~-~a~~llltg~~~~-a~eA~~~Glv~~v~~~~~~~~--~~~~--------------  206 (266)
T d1pjha_         145 PFANLGLITEGGTTVSLPLKFGTN-TTYECLMFNKPFK-YDIMCENGFISKNFNMPSSNA--EAFN--------------  206 (266)
T ss_dssp             CHHHHTCCCCTTHHHHHHHHHCHH-HHHHHHHTTCCEE-HHHHHHTTCCSEECCCCTTCH--HHHH--------------
T ss_pred             cccccccccccccccccccccccc-hhhhhhccCCcCC-HHHHHHCCCEeEeeCchhhhH--HHHH--------------
Confidence            999999999999999999999997 9999999999999 999999999999998777643  2221              


Q ss_pred             HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534          303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA  382 (461)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~  382 (461)
                                                                        .+.++++++.+...++.++..+|++++...
T Consensus       207 --------------------------------------------------~~~~~~l~~~~~~~~~~s~~~~K~~l~~~~  236 (266)
T d1pjha_         207 --------------------------------------------------AKVLEELREKVKGLYLPSCLGMKKLLKSNH  236 (266)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHTTT
T ss_pred             --------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence                                                              134555556888999999999999998754

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=4.2e-48  Score=373.35  Aligned_cols=243  Identities=17%  Similarity=0.209  Sum_probs=214.4

Q ss_pred             ceEEEE-ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534           67 FVKGNV-HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (461)
Q Consensus        67 ~i~~~~-~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~  145 (461)
                      .|.++. ..+||++||||||+ .|+||.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++++....       
T Consensus         3 ~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~-------   74 (249)
T d1sg4a1           3 RVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS-------   74 (249)
T ss_dssp             SEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC-------
T ss_pred             cEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccc-------
Confidence            456665 25789999999997 599999999999999999999999999999999867899999999874311       


Q ss_pred             CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE--ecc
Q 012534          146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL--AMP  223 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f--~~p  223 (461)
                                          ......++..+++++.++.++||||||+|||+|+|||++|+++|||||++++++|  ++|
T Consensus        75 --------------------~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~p  134 (249)
T d1sg4a1          75 --------------------PAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLN  134 (249)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCC
T ss_pred             --------------------cccccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccc
Confidence                                1234457777788999999999999999999999999999999999999999976  789


Q ss_pred             ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534          224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL  303 (461)
Q Consensus       224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~  303 (461)
                      |+++|++|++|++++|++++|.. +++++++||++++ |++|+++||||+++|++++.+.+                   
T Consensus       135 e~~~Gl~p~~g~~~~l~~~iG~~-~a~~lll~g~~~~-a~~A~~~Glv~~v~~~~~l~~~a-------------------  193 (249)
T d1sg4a1         135 ETQLGIIAPFWLKDTLENTIGHR-AAERALQLGLLFP-PAEALQVGIVDQVVPEEQVQSTA-------------------  193 (249)
T ss_dssp             GGGGTCCCCHHHHHHHHHHHCHH-HHHHHHHHTCCBC-HHHHHHHTSSSEEECGGGHHHHH-------------------
T ss_pred             ccccccccccccccccccccccc-ccccccccccccc-HHHHHhhccccccCChHHHHHHH-------------------
Confidence            99999999999999999999997 9999999999999 99999999999999988876422                   


Q ss_pred             HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534          304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS  383 (461)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~  383 (461)
                                                                       .+||+    ++++.||.+++.+|++++... 
T Consensus       194 -------------------------------------------------~~~a~----~l~~~~~~a~~~~K~~~~~~~-  219 (249)
T d1sg4a1         194 -------------------------------------------------LSAIA----QWMAIPDHARQLTKAMMRKAT-  219 (249)
T ss_dssp             -------------------------------------------------HHHHH----HHHTSCHHHHHHHHHHHHHHH-
T ss_pred             -------------------------------------------------HHHHH----HHHcCCHHHHHHHHHHHHHHH-
Confidence                                                             24554    799999999999999999876 


Q ss_pred             hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 012534          384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVR  420 (461)
Q Consensus       384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~  420 (461)
                              ...+.+.++.|.+.+...+.+++++++|+
T Consensus       220 --------~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         220 --------ASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             --------HHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             --------hCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence                    45788899999999999999999998875

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=2.7e-45  Score=353.57  Aligned_cols=188  Identities=17%  Similarity=0.223  Sum_probs=169.1

Q ss_pred             CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (461)
Q Consensus        63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  142 (461)
                      ..|++|++++ +|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....    
T Consensus        10 ~~y~~i~~~~-~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g-~~FsaG~Dl~~~~~~~----   83 (249)
T d1szoa_          10 QKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLGT----   83 (249)
T ss_dssp             TSCTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCSS----
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeeccc-ccccccchhhhhhccc----
Confidence            4689999998 789999999999999999999999999999999999999999999998 8999999999863211    


Q ss_pred             CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe-
Q 012534          143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA-  221 (461)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~-  221 (461)
                                             ......++...+.++..+.++||||||+|||+|. ||++|+++||+||++++++|. 
T Consensus        84 -----------------------~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~  139 (249)
T d1szoa_          84 -----------------------PHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQD  139 (249)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEEC
T ss_pred             -----------------------ccchhhhhhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEE
Confidence                                   1123346666778899999999999999999885 577999999999999999995 


Q ss_pred             ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      +||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+|||++++.+
T Consensus       140 ~pe~~~g~~p~~g~~~~l~r~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~  198 (249)
T d1szoa_         140 GPHFPSGIVPGDGAHVVWPHVLGSN-RGRYFLLTGQELD-ARTALDYGAVNEVLSEQELLP  198 (249)
T ss_dssp             TTSGGGTCCCTTTHHHHHHHHHCHH-HHHHHHHTTCEEE-HHHHHHHTSCSEEECHHHHHH
T ss_pred             eeccccccccccccccccccccCcc-ceeeecccCCCCC-HHHHHHhCCcCcccCHHHHHH
Confidence            7999999999999999999999997 9999999999999 999999999999999877653

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=2.3e-05  Score=69.40  Aligned_cols=98  Identities=12%  Similarity=0.014  Sum_probs=68.1

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchHHH---------------HHhc
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAK  241 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~~~---------------~L~r  241 (461)
                      ++..|..++.|++..+.|.|.+.|.-|.++||  .|++.++++|-+-+...|..-...-..               .+.+
T Consensus        66 i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~  145 (183)
T d1yg6a1          66 IYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAL  145 (183)
T ss_dssp             HHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567889999999999999999999999998  799999999988777655421111000               1111


Q ss_pred             CCCchH-HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          242 GPGGGS-VGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       242 lvG~~~-~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      ..|... .-.+++-.-.-++ |+||+++||||+|+..
T Consensus       146 ~tg~~~e~i~~~~~~d~~lt-a~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         146 HTGQSLEQIERDTERDRFLS-APEAVEYGLVDSILTH  181 (183)
T ss_dssp             HHCCCHHHHHHHTSSCEEEE-HHHHHHHTSSSEECCC
T ss_pred             HHCcCHHHHHHHhccCcccc-HHHHHHcCCCcEEecc
Confidence            223221 2333333333467 9999999999999964

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=8.2e-05  Score=65.48  Aligned_cols=98  Identities=11%  Similarity=0.035  Sum_probs=66.4

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCch---HHH------------HHhc
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVG---FSY------------IAAK  241 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G---~~~------------~L~r  241 (461)
                      ++..|..++.||...+.|.|.+.|.-|.+++|  .|++.++++|-+.....|+.-...   ...            .+.+
T Consensus        63 i~d~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~  142 (179)
T d2cbya1          63 IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAE  142 (179)
T ss_dssp             HHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788999999999999999999999999  799999999988777555421110   000            1122


Q ss_pred             CCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          242 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       242 lvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      .-|.. ..-..++-...-++ |+||+++||||+|+..
T Consensus       143 ~tg~~~~~i~~~~~~d~~l~-a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         143 FTGQPIERIEADSDRDRWFT-AAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHCCCHHHHHHHHHTTCEEE-HHHHHHHTSCSEECSC
T ss_pred             HhCCCHHHHHHhhcCCceec-HHHHHHcCCCcEEecC
Confidence            22332 02334444556677 9999999999999864

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.66  E-value=0.00054  Score=60.73  Aligned_cols=98  Identities=12%  Similarity=0.081  Sum_probs=65.7

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhc--CCeEEEcCCceEeccccccCCCCCchHHH-----------------HH
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGH--GRYRIVTEKTLLAMPENGIGLFPDVGFSY-----------------IA  239 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~Lala--cD~ria~e~a~f~~pe~~lGl~P~~G~~~-----------------~L  239 (461)
                      ++..|..++.||...+.|.|.+.|.-|+++  +|.|++.++++|-+-....|.........                 .+
T Consensus        74 i~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~  153 (192)
T d1y7oa1          74 IVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKIL  153 (192)
T ss_dssp             HHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            455677899999999999999999999776  57999999999999888766532211110                 01


Q ss_pred             hcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          240 AKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       240 ~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      ....|.. ..-.+.+-...-++ |+||+++||||+|+..
T Consensus       154 ~~~tg~~~~~i~~~~~rd~~ls-a~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         154 AENSGQSMEKVHADAERDNWMS-AQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHTCCHHHHHHHHHSCCCBC-HHHHHHHTSCSEECCC
T ss_pred             HHHhCCCHHHHHHhhcCCceec-HHHHHHcCCCcEEecC
Confidence            1111221 12334444556788 9999999999999864

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.63  E-value=0.00032  Score=62.15  Aligned_cols=95  Identities=9%  Similarity=0.006  Sum_probs=67.8

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchHHH------------------H
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY------------------I  238 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~~~------------------~  238 (461)
                      ++..|..++.|+...+.|.|.+.|.-++++++  .|++.++++|-+.....|..   |...                  .
T Consensus        67 i~d~i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i  143 (190)
T d2f6ia1          67 ILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHY  143 (190)
T ss_dssp             HHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCceEEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788999999999999999999999998  69999999999988876653   2111                  1


Q ss_pred             HhcCCCchH-HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534          239 AAKGPGGGS-VGAYLGMTGKRISTPSDALFAGLGTDYVPS  277 (461)
Q Consensus       239 L~rlvG~~~-~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~  277 (461)
                      +.+.-|... .-.+++-.-.-++ |+||+++||||+|+..
T Consensus       144 ~a~~tg~~~~~i~~~~~~d~~l~-a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         144 LSSFTNQTVETIEKDSDRDYYMN-ALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHHHCCCHHHHHHHHHTTCEEC-HHHHHHHTSCSEECCC
T ss_pred             HHHHcCCCHHHHHHhccCCeeec-HHHHHHcCCCcEEccc
Confidence            222223220 1222333344577 9999999999999964

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.48  E-value=0.00053  Score=60.84  Aligned_cols=95  Identities=15%  Similarity=0.072  Sum_probs=67.8

Q ss_pred             HHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchHHH-----------------HH
Q 012534          179 LICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY-----------------IA  239 (461)
Q Consensus       179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~~~-----------------~L  239 (461)
                      ++..|..++.||...+-|.|.+.|.-|.+++|  .|++.++++|-+.....|..-.  ...                 .+
T Consensus        76 i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~--~~di~~~~~el~~~~~~i~~i~  153 (193)
T d1tg6a1          76 IYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQ--ATDIAIQAEEIMKLKKQLYNIY  153 (193)
T ss_dssp             HHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcC--HHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788999999999999999999999999  5999999999998877665311  111                 11


Q ss_pred             hcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecC
Q 012534          240 AKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVP  276 (461)
Q Consensus       240 ~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~  276 (461)
                      ...-|.. ..-..++-.-.-++ |+||+++||||+|+.
T Consensus       154 a~~Tg~~~~~i~~~~~rD~~lt-a~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         154 AKHTKQSLQVIESAMERDRYMS-PMEAQEFGILDKVLV  190 (193)
T ss_dssp             HHHHCCCHHHHHHHHSSCEEEC-HHHHHHHTSCSEECS
T ss_pred             HHHcCCCHHHHHHHhccCccCC-HHHHHHcCCCCEEcc
Confidence            1112221 02233333334477 999999999999985

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00088  Score=63.76  Aligned_cols=150  Identities=12%  Similarity=0.021  Sum_probs=102.6

Q ss_pred             cEEEEEEcCCCC--------CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534           76 GVAVITLDRPKA--------LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (461)
Q Consensus        76 ~V~~ItLnrP~~--------~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (461)
                      .|.+|--.+...        .-+++++-...-.+.++.++.-. +-+|-|--+ ++ |-.|.+-.+..            
T Consensus       109 ~V~vIg~~kg~~~~~~~~~n~G~~~p~~~rKa~r~~~~a~~~~-~Pii~~vDt-pG-~~~g~~~E~~g------------  173 (316)
T d2f9ya1         109 PVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFK-MPIITFIDT-PG-AYPGVGAEERG------------  173 (316)
T ss_dssp             EEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEE-SC-SCCSHHHHHTT------------
T ss_pred             eEEEEEeecCCCcccccccccccccHHHHHHHHHHHHHHHHcC-cceEEEEec-Cc-ccCCccccccc------------
Confidence            455565555321        24588999998888888887753 445555443 22 33443333221            


Q ss_pred             CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534          148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l  227 (461)
                                              ....+...+..+..+.+|+|+.|=|-+.|||.-....+|.++|-++|.|+.     
T Consensus       174 ------------------------~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~v~m~~~a~~sv-----  224 (316)
T d2f9ya1         174 ------------------------QSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSV-----  224 (316)
T ss_dssp             ------------------------HHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEES-----
T ss_pred             ------------------------HHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhHHHHHhhhHHhh-----
Confidence                                    334455677889999999999999999999999999999999999999983     


Q ss_pred             CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecC
Q 012534          228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP  276 (461)
Q Consensus       228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~  276 (461)
                       +.|.+.++..+...-    .+.+.. ....++ +++.+++|+||++++
T Consensus       225 -ispEg~AsILwkd~~----~a~eaA-ealklt-a~dL~~lgiIDeII~  266 (316)
T d2f9ya1         225 -ISPEGCASILWKSAD----KAPLAA-EAMGII-RPRLKELKLIDSIIP  266 (316)
T ss_dssp             -SCHHHHHHHHSSCST----THHHHH-HHHTCS-HHHHHTTTSCSCCCC
T ss_pred             -ccchhhhhHhhccch----hhcchH-HHHhhh-hHHHHHcCchhhccc
Confidence             345555554443332    232222 234588 999999999999996

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0031  Score=58.38  Aligned_cols=145  Identities=14%  Similarity=0.175  Sum_probs=88.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |+++..|--=..-+++..-.+.+..+++.+.+.. +-.|.++-.|      |+.+.+-...                   
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~sg------G~r~~e~~~s-------------------  151 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDN-CPLICFSASG------GARMQEALMS-------------------  151 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEEES------SBCGGGTHHH-------------------
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHcC-CCeEEEecCC------Ccccccccch-------------------
Confidence            5555555544667899999999999999887654 4455555433      3333332110                   


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhh-HhhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGI-GISGHGRYRIVTEKTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~-~LalacD~ria~e~a~f~~pe~~lGl~P~~G~  235 (461)
                                  +. ...........+.....|+|+++.|+|.|||. .+++.+|++++.+.+.+++.-.+         
T Consensus       152 ------------l~-~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP~---------  209 (263)
T d2f9yb1         152 ------------LM-QMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPR---------  209 (263)
T ss_dssp             ------------HH-HHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH---------
T ss_pred             ------------hh-cchhHHHHHHHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCHH---------
Confidence                        00 12222233444566789999999999999876 57788888888888776652211         


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN  279 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~  279 (461)
                        ......|..       +. +.+.+++-..+.|+||.++++++
T Consensus       210 --vve~~~ge~-------~~-e~~g~a~~~~~~G~iD~vv~~ee  243 (263)
T d2f9yb1         210 --VIEQTVREK-------LP-PGFQRSEFLIEKGAIDMIVRRPE  243 (263)
T ss_dssp             --HHHHHHTSC-------CC-TTTTBHHHHGGGTCCSEECCHHH
T ss_pred             --HHhhhcCCc-------CC-hhhccHHHHHhCCCCCEEECCHH
Confidence              011111211       12 22333666678899999997544

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.82  E-value=0.0027  Score=59.63  Aligned_cols=159  Identities=14%  Similarity=-0.042  Sum_probs=88.5

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcc
Q 012534           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVK  158 (461)
Q Consensus        80 ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (461)
                      |.-|.+. +.-+++..-.+.+.++++.+.+.. +-+|.|.-.|      |+.+.+-........                
T Consensus       108 v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~ds~------Ga~~~~~~e~~~~~~----------------  164 (287)
T d1pixa2         108 VVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNCS------GVKFDEQEKVYPNRR----------------  164 (287)
T ss_dssp             EEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECCC------EECGGGHHHHSSSTT----------------
T ss_pred             EEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEecCC------cccCCcchhhccchh----------------
Confidence            3334443 457888999999999988887754 4455554332      333332111100000                


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec--cccccCCCCCchHH
Q 012534          159 EISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM--PENGIGLFPDVGFS  236 (461)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~--pe~~lGl~P~~G~~  236 (461)
                                   .+...+..+..+....+|+|++|-|.|.|||.-.+++||++++.+++.+.+  |.+--+..+..+..
T Consensus       165 -------------~~g~~~~~~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~  231 (287)
T d1pixa2         165 -------------GGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVD  231 (287)
T ss_dssp             -------------STTHHHHHHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCC
T ss_pred             -------------hHHHHHHHHHHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhh
Confidence                         001111223346667899999999999999998888888888888888777  33322333322211


Q ss_pred             HHHhcCCCchHHHHHHhhcCCCCCcHHHHH--HcCccceecCCC
Q 012534          237 YIAAKGPGGGSVGAYLGMTGKRISTPSDAL--FAGLGTDYVPSG  278 (461)
Q Consensus       237 ~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~--~~GLv~~vv~~~  278 (461)
                      ......+.   ....--.+-+.+. +.+.+  .-|+++.+++++
T Consensus       232 ~~~~~ei~---~~~ge~~~~eeLG-Ga~~H~~~sG~~d~v~~~e  271 (287)
T d1pixa2         232 LEYANEIA---DMVDRTGKTEPPG-AVDIHYTETGFMREVYASE  271 (287)
T ss_dssp             HHHHHHHH---HHHHTTCCCCCSS-BHHHHTTTSCCSCEEESSH
T ss_pred             hhhHHHHH---hhhcccccccccc-cHHHhhhhcccceeecCCH
Confidence            11111110   0000112445565 45443  469999999764

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.015  Score=53.41  Aligned_cols=139  Identities=14%  Similarity=0.118  Sum_probs=87.5

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG  155 (461)
Q Consensus        76 ~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (461)
                      .|.++..+-.-+.-+++....+.+..+.+.+.++. +-+|.|.-.|      |+.+.+-...                  
T Consensus        90 ~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~dsg------Gar~~eg~~~------------------  144 (258)
T d2a7sa1          90 DVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDGA------GARIQEGVVS------------------  144 (258)
T ss_dssp             EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGCTHH------------------
T ss_pred             eEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEeccC------Cccccccccc------------------
Confidence            35555556555678999999999999999998765 4555554333      2333321100                  


Q ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEeccccccCCCCCch
Q 012534          156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVG  234 (461)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~~lGl~P~~G  234 (461)
                                   . ......+... ....-..|+|++|.|+|.|||......||++|+.++ +.++       +.    
T Consensus       145 -------------~-~~~~~~~~~~-~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~-------~a----  198 (258)
T d2a7sa1         145 -------------L-GLYSRIFRNN-ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMF-------IT----  198 (258)
T ss_dssp             -------------H-HHHHHHHHHH-HHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCB-------SS----
T ss_pred             -------------c-cchhhHHHHH-HHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEE-------cc----
Confidence                         0 0111112222 233456999999999999999999999999998764 4333       21    


Q ss_pred             HHHHHhcCCCchHHHHHHhhcCCCCCcHHHH-------HHcCccceecCCC
Q 012534          235 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDA-------LFAGLGTDYVPSG  278 (461)
Q Consensus       235 ~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA-------~~~GLv~~vv~~~  278 (461)
                               |++ .. + ..+|+.++ .+|.       .+.|++|.+++++
T Consensus       199 ---------GP~-vV-~-~~~ge~~~-~eeLGga~~h~~~sG~~D~v~~de  236 (258)
T d2a7sa1         199 ---------GPD-VI-K-TVTGEEVT-MEELGGAHTHMAKSGTAHYAASGE  236 (258)
T ss_dssp             ---------CHH-HH-H-HHHCCCCC-HHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             ---------Chh-HH-H-HhcCCccC-hhhccCHhHhhhhccccceEeCCH
Confidence                     211 11 1 24677776 6643       4579999999753

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.50  E-value=0.015  Score=53.17  Aligned_cols=138  Identities=17%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |+++..|---..-+++....+.+..+++.+.+.. +-+|.|...|      |+.+.+-....                  
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~dsg------G~r~~e~~~~l------------------  142 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSG------GARIQEGVDAL------------------  142 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC------SBCGGGTHHHH------------------
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Ccccccccccc------------------
Confidence            4444444444567899999999999998887664 3455554433      33443321100                  


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~~lGl~P~~G~  235 (461)
                                   . .....+... ....-..|+|++|.|+|.||+......||++|+.++ +.       +++.     
T Consensus       143 -------------~-~~~~~~~~~-~~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~-------i~~a-----  195 (251)
T d1vrga1         143 -------------A-GYGEIFLRN-TLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTAR-------MFIT-----  195 (251)
T ss_dssp             -------------H-HHHHHHHHH-HHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCB-------CBSS-----
T ss_pred             -------------c-cchHHHHHH-HHHCCCCCEEEEEccCccccceehhhhCceEEEEcccee-------EEec-----
Confidence                         0 111112222 233457999999999999999999999999998764 33       2221     


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHH-------HHcCccceecCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDA-------LFAGLGTDYVPSG  278 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA-------~~~GLv~~vv~~~  278 (461)
                              |+  ...+ ..+|+.++ .+|.       .+.|++|.+++++
T Consensus       196 --------Gp--~vv~-~~~ge~~~-~eelGga~~h~~~sG~~D~v~~de  233 (251)
T d1vrga1         196 --------GP--NVIK-AVTGEEIS-QEDLGGAMVHNQKSGNAHFLADND  233 (251)
T ss_dssp             --------CH--HHHH-HHHCCCCC-HHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             --------Cc--hhhh-hhcCCcCC-hHHccchhhhhhccccceEEECCH
Confidence                    11  1111 25677787 6664       4579999999764

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.49  E-value=0.0087  Score=54.94  Aligned_cols=105  Identities=13%  Similarity=0.117  Sum_probs=68.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI-EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG  155 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVl-tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (461)
                      |.++..+---..-+++....+.+..+++.+.++.- -+|.+ .|.|       +.+.+-...                  
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~l-PlV~l~~sgG-------~r~~eg~~~------------------  144 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTGT-PFLFFYDSGG-------ARIQEGIDS------------------  144 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEEEECS-------BCGGGTHHH------------------
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcCC-CeEEEEecCC-------Cccccccee------------------
Confidence            45455554446788999999999999999987653 44444 3433       223321110                  


Q ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534          156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  222 (461)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~  222 (461)
                                   +. .+...+.....+.. ..|+|+++.|+|.||+.....+||++|+++.+.+++
T Consensus       145 -------------l~-~~~~~~~~~~~ls~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~  196 (253)
T d1on3a1         145 -------------LS-GYGKMFFANVKLSG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFI  196 (253)
T ss_dssp             -------------HH-HHHHHHHHHHHHTT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEES
T ss_pred             -------------cc-ccceehHHHHHHhc-cceEEEEEecCcccceeeccchhhheeccccceEEe
Confidence                         00 11111222233333 589999999999999999999999999998777654

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.18  E-value=0.022  Score=52.22  Aligned_cols=138  Identities=18%  Similarity=0.159  Sum_probs=87.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD  156 (461)
Q Consensus        77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (461)
                      |.++..|-.=+.-+++....+.+..+++.+.+.. +-.|.|.-.|      |+.+.+-....                  
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~dsg------Garm~e~~~~~------------------  144 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSG------GARIQEGVASL------------------  144 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGTHHHH------------------
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecCC------CcccCcccccc------------------
Confidence            5555556555678899999999999999988764 4566665544      23333321100                  


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcC-CceEeccccccCCCCCchH
Q 012534          157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGF  235 (461)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e-~a~f~~pe~~lGl~P~~G~  235 (461)
                                    ......+..... ..-..|+|+++.|+|.||+.....+||++|+.+ .+.+++.            
T Consensus       145 --------------~~~~~~~~~~~~-~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~a------------  197 (258)
T d1xnya1         145 --------------GAYGEIFRRNTH-ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT------------  197 (258)
T ss_dssp             --------------HHHHHHHHHHHH-TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS------------
T ss_pred             --------------cchhHHHHHHHH-HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEec------------
Confidence                          011112222222 234699999999999999999999999988876 4444431            


Q ss_pred             HHHHhcCCCchHHHHHHhhcCCCCCcHHHH-------HHcCccceecCCC
Q 012534          236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDA-------LFAGLGTDYVPSG  278 (461)
Q Consensus       236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA-------~~~GLv~~vv~~~  278 (461)
                              |++  ..+ ..+|+.++ .+|+       ..-|++|.+++++
T Consensus       198 --------GP~--vv~-~~~ge~i~-~eelgga~~h~~~sG~~d~v~~de  235 (258)
T d1xnya1         198 --------GPD--VIK-TVTGEDVG-FEELGGARTHNSTSGVAHHMAGDE  235 (258)
T ss_dssp             --------CHH--HHH-HHHCCCCC-HHHHHBHHHHHHTSSCCSEEESSH
T ss_pred             --------CHH--HHH-HHhcCccC-hHHhccHHHHHhcCCeeEEEeCCH
Confidence                    111  111 24677777 6664       4569999999753

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.12  E-value=0.04  Score=50.86  Aligned_cols=158  Identities=12%  Similarity=0.135  Sum_probs=100.6

Q ss_pred             EEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG  155 (461)
Q Consensus        77 V~~ItLnrP~~-~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (461)
                      |++|. |+|.. ..+++.+-.....+.++..+.. ++-+|.|.-..  .|..|-+-....                    
T Consensus        72 vgvia-n~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dtp--Gf~~G~~~E~~g--------------------  127 (271)
T d2a7sa2          72 VGIVA-NQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDVP--GFLPGTDQEYNG--------------------  127 (271)
T ss_dssp             EEEEE-ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHHC--------------------
T ss_pred             EEEEe-ccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeechh--hhhhhccHHHhh--------------------
Confidence            44444 55543 3689999999999999988765 47788887653  577776544321                    


Q ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhh----hcCCeEEEcCCceEeccccccCCCC
Q 012534          156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFP  231 (461)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~La----lacD~ria~e~a~f~~pe~~lGl~P  231 (461)
                                      ..+...+++.++..+..|.|+.|=|.++|||....    +.+|++++.++++++.       .+
T Consensus       128 ----------------~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mg  184 (271)
T d2a7sa2         128 ----------------IIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MG  184 (271)
T ss_dssp             ----------------HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SC
T ss_pred             ----------------HHHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cC
Confidence                            45555678889999999999999999999774432    2367776666665554       33


Q ss_pred             CchHHHHH-hcCCCch---------HHHHH-HhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          232 DVGFSYIA-AKGPGGG---------SVGAY-LGMTGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       232 ~~G~~~~L-~rlvG~~---------~~a~~-l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                      +-|+...+ .+.+...         .+... .-.....-+ +-.|...|++|.|+++.+...
T Consensus       185 pegaa~v~~~~~l~~~~~~~~~~~~~~~~~~~e~~e~~~~-p~~aa~~g~iD~VIdP~dTR~  245 (271)
T d2a7sa2         185 ASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVN-PYVAAERGYVDAVIPPSHTRG  245 (271)
T ss_dssp             HHHHHHHHTTTTTTGGGTSSCCTTSSTTHHHHHHHTTTSB-SHHHHHHTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHhcC-HHHHHHcCCCCeeECHHHHHH
Confidence            33333333 2222110         00111 111222234 678888999999999877643

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.25  Score=47.49  Aligned_cols=109  Identities=16%  Similarity=0.223  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE  168 (461)
Q Consensus        89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (461)
                      -.+.++-...-.+++..+.+.-++-+|+|.-.  +.|+.|-+-..-                                  
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~--pGF~~G~~~E~~----------------------------------  151 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW--RGFSGGQRDMFN----------------------------------  151 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC--CCBCC------C----------------------------------
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecC--CcccCcHHHHHH----------------------------------
Confidence            46778888888898988877667778888654  468887653220                                  


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEe--CCccchhhhHhhhcCCeEEEcC-CceEeccccccCCCCCchHHHH
Q 012534          169 MIEVFTAEYSLICKISEYKKPYISLM--DGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYI  238 (461)
Q Consensus       169 ~~~~~~~~~~~~~~l~~~~kPvIAav--nG~a~GgG~~LalacD~ria~e-~a~f~~pe~~lGl~P~~G~~~~  238 (461)
                        ..++..-.++.++.++..|+|+.|  .|.+.||+..++ .+  .+-.+ -..|+.|..++|+.++-|+...
T Consensus       152 --gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~GGa~vv~-~~--~~~~~~~~~yAwP~a~~gVm~pEGav~I  219 (404)
T d1uyra2         152 --EVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVV-DP--TINADQMEMYADVNARAGVLEPQGMVGI  219 (404)
T ss_dssp             --THHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHTT-CG--GGGTTTEEEEEETTCEEESSCHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhcCCCEEEEEeCCcccchhhhhcc-cC--ccCCccceEEECCccccccCChhhhhhh
Confidence              145556678889999999999999  677777554433 11  11111 1245666677777666665543

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=94.92  E-value=0.065  Score=49.16  Aligned_cols=157  Identities=12%  Similarity=0.101  Sum_probs=98.6

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG  155 (461)
Q Consensus        77 V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (461)
                      |++|. |+|. ...+++.+-.+...+.++..+.- ++-+|.|.-.  ..|..|-+-..-.                    
T Consensus        69 vgvia-n~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~--pGf~~G~~~E~~g--------------------  124 (264)
T d1on3a2          69 VGIVA-NQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV--PGFLPGVQQEYGG--------------------  124 (264)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHTT--------------------
T ss_pred             EEEEe-ccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc--ccccccHHHHHHH--------------------
Confidence            55444 5554 46789999999999999888874 5777777665  2577776543311                    


Q ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh----cCCeEEEcCCceEeccccccCCCC
Q 012534          156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFP  231 (461)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal----acD~ria~e~a~f~~pe~~lGl~P  231 (461)
                                      ..+..-+++.++.++..|.|+.|=|.++|+|..-+.    ..|++++-+++       .+|..+
T Consensus       125 ----------------~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A-------~~~vMg  181 (264)
T d1on3a2         125 ----------------IIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSA-------EIAVMG  181 (264)
T ss_dssp             ----------------HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTC-------EEESSC
T ss_pred             ----------------HHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhh-------Hhhhcc
Confidence                            556667788899999999999999999998764443    24555555554       555544


Q ss_pred             CchHHHHHhcC-----CCchH-HHHHHhh-cCCCCCcHHHHHHcCccceecCCCChH
Q 012534          232 DVGFSYIAAKG-----PGGGS-VGAYLGM-TGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       232 ~~G~~~~L~rl-----vG~~~-~a~~l~L-tG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                      .-|+...+-+.     --... +...+.. .-+.-+ +-.|...|.+|.|+++.+.-
T Consensus       182 ~Egaa~v~~~~el~a~~~~~~~~~~~~~e~~~~~~~-p~~aA~~g~iD~VIdP~eTR  237 (264)
T d1on3a2         182 AEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNT-PYVAAARGQVDDVIDPADTR  237 (264)
T ss_dssp             HHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSS-HHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhcC-HHHHHHcCCCCeeECHHHHH
Confidence            44444333210     00000 0111111 111234 67788899999999987754

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.92  E-value=0.2  Score=45.77  Aligned_cols=157  Identities=13%  Similarity=0.099  Sum_probs=98.6

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG  155 (461)
Q Consensus        77 V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (461)
                      |++|. |+|. ...+++.+-.+...+.++..+.. ++=.|.|.-.  ..|-.|.+-..-.                    
T Consensus        69 vgvia-n~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt--pGf~~G~~~E~~g--------------------  124 (264)
T d1vrga2          69 VGIVA-NQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT--PGYLPGVAQEHGG--------------------  124 (264)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHTT--------------------
T ss_pred             EEEEe-ccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec--ccccccHHHHHHh--------------------
Confidence            55454 5544 44679999999999999988875 4667777665  2476665444311                    


Q ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhh----hcCCeEEEcCCceEeccccccCCCC
Q 012534          156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFP  231 (461)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~La----lacD~ria~e~a~f~~pe~~lGl~P  231 (461)
                                      ..+...+++.++..+..|.|+.|=|.++|||..-.    +.+|++++-+++.++.       ..
T Consensus       125 ----------------~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~  181 (264)
T d1vrga2         125 ----------------IIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MG  181 (264)
T ss_dssp             ----------------HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SC
T ss_pred             ----------------HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cC
Confidence                            45566678889999999999999999999876322    2477777776666654       33


Q ss_pred             CchHHHHHhc-C---CCch-HHHHHH--hhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534          232 DVGFSYIAAK-G---PGGG-SVGAYL--GMTGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       232 ~~G~~~~L~r-l---vG~~-~~a~~l--~LtG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                      +-|+...+-+ .   .... ....++  .+.-+.-+ +-.+...|++|.|+++.+..
T Consensus       182 pe~aa~v~~~~~l~~~~~~~~~~~~~~~~~~e~~~~-~~~aa~~g~iD~VIdP~dTR  237 (264)
T d1vrga2         182 PEGAANIIFKREIEASSNPEETRRKLIEEYKQQFAN-PYIAASRGYVDMVIDPRETR  237 (264)
T ss_dssp             HHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSS-HHHHHHTTSSSEECCGGGHH
T ss_pred             HHHhhhhhhhhhhhhhhCcHHHHHHHHHHHHHHhcC-HHHHHHcCCCCeeECHHHHH
Confidence            3333322211 0   0000 000110  01111234 78888999999999987764

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=93.47  E-value=0.69  Score=42.74  Aligned_cols=152  Identities=14%  Similarity=0.089  Sum_probs=92.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS  167 (461)
Q Consensus        88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (461)
                      .-+|+.+-.....+.++.++.. ++-+|.|.-.  ..|-.|-+-..-                                 
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~--pGf~~g~~~E~~---------------------------------  139 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT--TGIDVGNDAEKA---------------------------------  139 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHT-TCCEEEEECC--CEECCSHHHHHT---------------------------------
T ss_pred             CCccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC--CCcccchHHHhh---------------------------------
Confidence            3568999999999999988875 3566766544  247776443321                                 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE--eccccccCCCCCchHHHHHh-cCC-
Q 012534          168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL--AMPENGIGLFPDVGFSYIAA-KGP-  243 (461)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f--~~pe~~lGl~P~~G~~~~L~-rlv-  243 (461)
                         ...+..-+++.++..+.+|.|++|=|.++|||...+....   ...+..|  ..|...+|+.++-|+...+- +.+ 
T Consensus       140 ---g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~---~~~~~~~~~awP~aeigvMg~E~aa~vl~~~el~  213 (299)
T d1pixa3         140 ---ELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQ---GNDTNAFSIGTAATEIAVMNGETAATAMYSRRLA  213 (299)
T ss_dssp             ---THHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTT---CTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHhhcceeEEEEecccccccccccccCc---cCcccceecCCCccccccccchhhheeehhhhhh
Confidence               1455566788899999999999999999998854332221   1222233  33555666655444444331 111 


Q ss_pred             -----CchHH-----HHHHhh-cCCCCCcHHHHHHcCccceecCCCChHH
Q 012534          244 -----GGGSV-----GAYLGM-TGKRISTPSDALFAGLGTDYVPSGNLGS  282 (461)
Q Consensus       244 -----G~~~~-----a~~l~L-tG~~i~~A~eA~~~GLv~~vv~~~~l~~  282 (461)
                           +....     -.+++- .-+..+ +..|...|++|.|+++.+.-.
T Consensus       214 ~~~~~~~~~~e~~e~~~~~~~~~~~~~s-p~~aAs~~~iD~IIDP~dTR~  262 (299)
T d1pixa3         214 KDRKAGKDLQPTIDKMNNLIQAFYTKSR-PKVCAELGLVDEIVDMNKIRG  262 (299)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHTTS-HHHHHHHTSSSEECCTTTHHH
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHhcC-HHHHHHhCCcCeeECHHHHHH
Confidence                 11000     011110 012345 778889999999999988653

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.27  E-value=0.3  Score=44.47  Aligned_cols=157  Identities=15%  Similarity=0.193  Sum_probs=98.3

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG  155 (461)
Q Consensus        77 V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (461)
                      |++|. |+|. ...+++.+-.....+.++..+.. ++=+|.|.-..  .|-.|.+-..-.                    
T Consensus        67 vgvia-~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~p--Gf~~G~~~E~~g--------------------  122 (263)
T d1xnya2          67 VGIVA-NQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP--GFLPGVDQEHDG--------------------  122 (263)
T ss_dssp             EEEEE-ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHTT--------------------
T ss_pred             EEEEe-cccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeeccc--ccccchhHHHHh--------------------
Confidence            55444 5553 34689999999999999888875 46677776652  477766543211                    


Q ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh----cCCeEEEcCCceEeccccccCCCC
Q 012534          156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFP  231 (461)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal----acD~ria~e~a~f~~pe~~lGl~P  231 (461)
                                      ..+...+++.++.++..|.|+.|=|.++|||...+.    ..|+++|.+++.++.       .+
T Consensus       123 ----------------~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~  179 (263)
T d1xnya2         123 ----------------IIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MG  179 (263)
T ss_dssp             ----------------HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SC
T ss_pred             ----------------HHHHHHHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cC
Confidence                            455666788899999999999999999997765432    357777776666654       33


Q ss_pred             CchHHHHHhc-----CCCch-HHHHHHh--hcCCCCCcHHHHHHcCccceecCCCChH
Q 012534          232 DVGFSYIAAK-----GPGGG-SVGAYLG--MTGKRISTPSDALFAGLGTDYVPSGNLG  281 (461)
Q Consensus       232 ~~G~~~~L~r-----lvG~~-~~a~~l~--LtG~~i~~A~eA~~~GLv~~vv~~~~l~  281 (461)
                      +-|+...+-+     .-... ....++.  ..-...+ +..+...|++|.|+++.+..
T Consensus       180 pe~aa~il~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-p~~aA~~g~iD~VIdP~dTR  236 (263)
T d1xnya2         180 AQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLN-PYTAAERGYVDAVIMPSDTR  236 (263)
T ss_dssp             HHHHHHHHTHHHHHSCCTTCSSSHHHHHHHHHHHHSS-SHHHHHHTSSSEECCGGGHH
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcC-HHHHHHcccCCcccCHHHHH
Confidence            3333332211     00000 0001110  0011234 56788889999999988765

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.65  E-value=0.034  Score=52.64  Aligned_cols=77  Identities=14%  Similarity=0.071  Sum_probs=50.8

Q ss_pred             CCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHH
Q 012534          186 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDA  265 (461)
Q Consensus       186 ~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA  265 (461)
                      -..|+|++|.|.|+|+|+-++..||++|+.+++.+.+.-           ...+-...|.. .    -.+.+.+.+++=.
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ltG-----------p~~l~~~lG~e-V----y~s~~eLGG~~i~  302 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTG-----------APAINKMLGRE-V----YTSNLQLGGTQIM  302 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESSC-----------HHHHHHHSSSC-C----CSCTHHHHSHHHH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEeeC-----------HHHHHHhcCcc-c----cCChhHhCCHhHH
Confidence            469999999999999999999999999999987664421           11222223321 0    0011122223334


Q ss_pred             HHcCccceecCCC
Q 012534          266 LFAGLGTDYVPSG  278 (461)
Q Consensus       266 ~~~GLv~~vv~~~  278 (461)
                      .+-|+++.++++|
T Consensus       303 ~~nGv~h~~a~dd  315 (333)
T d1uyra1         303 YNNGVSHLTAVDD  315 (333)
T ss_dssp             HHHTSSSEEESSH
T ss_pred             hhCCCceEEeCCH
Confidence            5799999999854