Citrus Sinensis ID: 012542

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MLKPQVHQPQSIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEVYE
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccccEEEEEEEcccccccccccccHHHHcccccccccccEEEEEEEEEcccccccEEEEEEEccccEEEEEEEEEEccccccEEEEEccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccEEcccccccccccHHHHHHHHHccccHHHHHHccccccccccccccccccccccHHHHHHHccccHHHHHHHc
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEccccccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccHHHHHccccccccccEEEEEEEEEccccccccEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEcEHHHccccEEEEccccccHHHccHHHHHHHHHHHHHHHcccccccccccccccEEcEcccccHHHcHHHccccEcccccccccEEcccccEcccccccEcccccccccHHHccccccHHHcHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHcHcccHHHHcEccccccEEccccHHHcccccHHHcHHHHHHHHHHcccccccEEccccccccccccccccccccccccHHHccccccccHHHHHHc
mlkpqvhqpqsikplfplskpflhgnyghafrpvqststlfkgspklrigsvprntIKAIATSTEKSIKVKAVVTVkptvggflsnisldqglddlgDLFGKSLLLELVSaeldpktgldksTIQDYARKigadgdgnmqyesefevpsgfgeIGAILVENEHHKEMYLKDivldglpngpvnvtcnswlhskhdnkqkrvfftnklylpsqtpdglkrYRAEELTIlrgngqgerktydriydydvyndlgdpdkkpelarpvlggkqnpyprrcrtgrprcdtdqfsekregnfyvprdeaFSEVKQLTFSAKTVYSVLHALVPsletafvdpdlgfpyFSAIDALFnegvnlpplkqegfwnTLLPRLVKAIEDTgdnillfetpetmdrdkffwfrdeefsrqtlaglnpysirlitewplkstldpeiygppesaiTTELIEKEIGGMISVEEVYE
mlkpqvhqpqsikplfPLSKPFLHGNYGHAFRPVQSTSTLFkgspklrigsvprnTIKAIatsteksikvkaVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVsaeldpktgldkstIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKlylpsqtpdglkryRAEEltilrgngqgerktydrIYDYDVyndlgdpdkkpelarpvlggkqnpyprrcrtgrprcdtdqfsekregnfyvprdEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGdnillfetpetmdrDKFFWFRDEEFSrqtlaglnpySIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEVYE
MLKPQVHQPQSIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIkvkavvtvkptvGGFLSNISldqglddlgdlfgkslllelVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEVYE
***************FPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGL***TIQDYARKIG********YESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL********************************************FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMI*******
**********************************************************************KAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLE*******************YARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYP*********************NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVE**YE
**********SIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEVYE
************KPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEVYE
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLKPQVHQPQSIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEVYE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query461 2.2.26 [Sep-21-2011]
O24370 899 Linoleate 13S-lipoxygenas N/A no 0.973 0.499 0.579 1e-149
Q84YK8 941 Probable lipoxygenase 8, yes no 0.832 0.408 0.527 1e-113
P38418 896 Lipoxygenase 2, chloropla yes no 0.826 0.425 0.489 1e-107
P38419 924 Lipoxygenase 7, chloropla no no 0.822 0.410 0.522 1e-106
Q8GSM2 896 Lipoxygenase 2.3, chlorop N/A no 0.872 0.448 0.489 1e-106
Q9FNX8 926 Lipoxygenase 4, chloropla no no 0.889 0.442 0.438 4e-94
Q8H016 918 Probable lipoxygenase 6 O no no 0.872 0.437 0.429 2e-90
P93184 936 Lipoxygenase 2.1, chlorop N/A no 0.872 0.429 0.454 2e-89
Q9LNR3 919 Lipoxygenase 3, chloropla no no 0.841 0.422 0.445 2e-88
Q7XV13 899 Putative lipoxygenase 5 O no no 0.785 0.402 0.456 4e-86
>sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1 Back     alignment and function desciption
 Score =  529 bits (1363), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/471 (57%), Positives = 345/471 (73%), Gaps = 22/471 (4%)

Query: 1   MLKPQVHQP-QSIKPLFPL--SKPFLHGNYGHAFRPVQSTSTLF----KGSPKLRIGSVP 53
           MLKPQ+ Q  QS K L P   + P    ++     P+   +  F    K + ++      
Sbjct: 1   MLKPQLQQSSQSTKALIPSWNTNPLFLASF-----PINILNKNFRLKKKNNFRVHHNYNG 55

Query: 54  RNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAEL 113
            +T KA+ +STEK+  VKAVVTV+  V     N++L +GLDD+GDL GKSLLL +V+AEL
Sbjct: 56  ASTTKAVLSSTEKATGVKAVVTVQKQV-----NLNLSRGLDDIGDLLGKSLLLWIVAAEL 110

Query: 114 DPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIV 173
           D KTG++K  I+ YA + G D DG+  YE++F +P  FGE+GAIL+ENEHHKEMY+K+IV
Sbjct: 111 DHKTGIEKPGIRAYAHR-GRDVDGDTHYEADFVIPQDFGEVGAILIENEHHKEMYVKNIV 169

Query: 174 LDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQ 233
           +DG  +G V +TCNSW+HSK DN  KR+FFTNK YLPSQTP G+ R R EEL  LRG+G 
Sbjct: 170 IDGFVHGKVEITCNSWVHSKFDNPDKRIFFTNKSYLPSQTPSGVSRLREEELVTLRGDGI 229

Query: 234 GERKTYDRIYDYDVYNDLGDPDKKPELA-RPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR 292
           GERK ++RIYDYDVYNDLG+ D   + A RPVLGGK+ PYPRRC+TGRPR   D  SE R
Sbjct: 230 GERKVFERIYDYDVYNDLGEADSNNDDAKRPVLGGKELPYPRRCKTGRPRSKKDPLSETR 289

Query: 293 EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEG 352
               YVPRDEAFSEVK + FS  TVYSVLHA+VP+LE+   DP+LGFP+F AID+LFN G
Sbjct: 290 STFVYVPRDEAFSEVKSVAFSGNTVYSVLHAVVPALESVVTDPNLGFPHFPAIDSLFNVG 349

Query: 353 VNLPPL--KQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLA 410
           V+LP L  K+ G +N ++PRL+KAI DT  ++LLFE+P+ + RDKF WFRD EF+RQTLA
Sbjct: 350 VDLPGLGDKKSGLFN-VVPRLIKAISDTRKDVLLFESPQLVQRDKFSWFRDVEFARQTLA 408

Query: 411 GLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEVYE 461
           GLNPYSIRL+TEWPL+S LDP++YGPPES IT ELIEKEIG  ++VE+  +
Sbjct: 409 GLNPYSIRLVTEWPLRSKLDPKVYGPPESEITKELIEKEIGNYMTVEQAVQ 459
Plant lipoxygenase involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence. May not be involved in the bulk production of jasmonate upon wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Linolenic acid is the preferred substrate, before linoleic and arachidonic acids. Has also some activity with phosphatidylglycerol, but not with galactolipids.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 2
>sp|Q84YK8|LOXC2_ORYSJ Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1 Back     alignment and function description
>sp|P38418|LOX2_ARATH Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1 Back     alignment and function description
>sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2 Back     alignment and function description
>sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1 Back     alignment and function description
>sp|Q8H016|LOX6_ORYSJ Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2 Back     alignment and function description
>sp|P93184|LOX21_HORVU Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LNR3|LOX3_ARATH Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1 Back     alignment and function description
>sp|Q7XV13|LOX5_ORYSJ Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
224053392 897 predicted protein [Populus trichocarpa] 0.986 0.507 0.667 1e-177
224103783 565 predicted protein [Populus trichocarpa] 0.982 0.801 0.656 1e-173
71999169 898 lipoxygenase LOX1 [Populus deltoides] 0.982 0.504 0.654 1e-173
308943877 901 lipoxygenase [Camellia sinensis] 0.971 0.497 0.653 1e-170
229554825 901 lipoxygenase [Camellia sinensis] 0.971 0.497 0.650 1e-169
213876486 900 lipoxygenase [Camellia sinensis] 0.984 0.504 0.649 1e-168
255544764 900 lipoxygenase, putative [Ricinus communis 0.989 0.506 0.647 1e-167
71999171 903 lipoxygenase LOX2 [Populus deltoides] 0.991 0.506 0.644 1e-167
312837045 889 lipoxygenase [Vitis hybrid cultivar] 0.989 0.512 0.615 1e-158
32454712 900 lipoxygenase, partial [Nicotiana attenua 0.982 0.503 0.609 1e-158
>gi|224053392|ref|XP_002297796.1| predicted protein [Populus trichocarpa] gi|222845054|gb|EEE82601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/460 (66%), Positives = 373/460 (81%), Gaps = 5/460 (1%)

Query: 1   MLKPQVHQPQ-SIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKA 59
           MLKPQ+HQ   S K  F L KPF+HG+ GHA  PV S S   K + K+R+G     +IK+
Sbjct: 1   MLKPQLHQSHLSTKIPFLLPKPFIHGS-GHASFPVYSRSLSTKANKKVRVG-YKHGSIKS 58

Query: 60  IATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGL 119
           IA+ T++S  VKAVVTVK TV  F + I +++GLDD  DLFGK+LLLELVSAELDPKTGL
Sbjct: 59  IASVTQQSTDVKAVVTVKQTVVDFWTEIGIERGLDDFTDLFGKTLLLELVSAELDPKTGL 118

Query: 120 DKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN 179
           +K +I+ YA KI  +G+ +++YE++F VP  FGEIGAI VENEHHKEMYL D+VLDG P 
Sbjct: 119 EKPSIRKYAHKIDHEGE-DIKYEADFVVPPDFGEIGAIFVENEHHKEMYLHDVVLDGFPT 177

Query: 180 GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTY 239
           GPV+VTC+SW+HSK DNK+KR+FFTNK YLPSQTP G++R R EEL +LRGNGQG+RK  
Sbjct: 178 GPVHVTCDSWIHSKFDNKKKRLFFTNKSYLPSQTPSGIRRLREEELVLLRGNGQGQRKAG 237

Query: 240 DRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVP 299
           DRIYDYDVYND+G+PDKKPELARPVLGGK++PYPRRCRTGRPRC+TD  SEKR   FYVP
Sbjct: 238 DRIYDYDVYNDIGNPDKKPELARPVLGGKEHPYPRRCRTGRPRCETDPSSEKRVSAFYVP 297

Query: 300 RDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLK 359
           RDEAFSEVKQLTFSAKT+YS+ HAL+PS+     D +LGFPY +AID+LF+EG+ +PPL 
Sbjct: 298 RDEAFSEVKQLTFSAKTLYSLFHALIPSIGNVIDDANLGFPYMTAIDSLFSEGIEMPPLT 357

Query: 360 QEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRL 419
           +EGFW  ++PRL K I   GD +L FE P+ M+RDKFFWF+DEEF+RQTLAGLNPYSI+ 
Sbjct: 358 KEGFWKEVMPRLFKVIAGGGD-VLRFEVPKPMERDKFFWFKDEEFARQTLAGLNPYSIKS 416

Query: 420 ITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEV 459
           +TEWPLKS LDPEIYGPPESAIT+EL+E EIGG+  V++ 
Sbjct: 417 VTEWPLKSELDPEIYGPPESAITSELLEAEIGGVTRVDKA 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224103783|ref|XP_002334016.1| predicted protein [Populus trichocarpa] gi|222839571|gb|EEE77908.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|71999169|gb|AAZ57444.1| lipoxygenase LOX1 [Populus deltoides] Back     alignment and taxonomy information
>gi|308943877|gb|ADO51752.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|229554825|gb|ACQ76787.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|213876486|gb|ACJ54281.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|255544764|ref|XP_002513443.1| lipoxygenase, putative [Ricinus communis] gi|223547351|gb|EEF48846.1| lipoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|71999171|gb|AAZ57445.1| lipoxygenase LOX2 [Populus deltoides] Back     alignment and taxonomy information
>gi|312837045|dbj|BAJ34928.1| lipoxygenase [Vitis hybrid cultivar] Back     alignment and taxonomy information
>gi|32454712|gb|AAP83137.1| lipoxygenase, partial [Nicotiana attenuata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
UNIPROTKB|P38419 924 CM-LOX1 "Lipoxygenase 7, chlor 0.759 0.378 0.528 9.7e-96
TAIR|locus:2096915 896 LOX2 "lipoxygenase 2" [Arabido 0.737 0.379 0.5 2.1e-93
TAIR|locus:2030215 926 LOX4 "lipoxygenase 4" [Arabido 0.757 0.376 0.458 2.4e-83
TAIR|locus:2018848 919 LOX3 "lipoxygenase 3" [Arabido 0.757 0.379 0.450 1.1e-78
TAIR|locus:2008808 917 LOX6 "lipoxygenase 6" [Arabido 0.735 0.369 0.426 1.3e-70
TAIR|locus:2011030 859 LOX1 "lipoxygenase 1" [Arabido 0.750 0.402 0.408 5.5e-61
TAIR|locus:2087837 886 LOX5 [Arabidopsis thaliana (ta 0.683 0.355 0.401 9.9e-56
UNIPROTKB|P29250 870 LOX1.1 "Linoleate 9S-lipoxygen 0.696 0.368 0.403 3.1e-53
UNIPROTKB|P38419 CM-LOX1 "Lipoxygenase 7, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 192/363 (52%), Positives = 250/363 (68%)

Query:   109 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMY 168
             VS+ELD KTG +K+T++ YA  +  D    + YE++F+VPSGFG IGAI+V NE  +EM+
Sbjct:   119 VSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMF 178

Query:   169 LKDIVL---DGLPNGPV-NVTCNSWLHSK----HDNKQKRVFFTNKLYLPSQTPDGLKRY 220
             L+DI L   DG  N  V  + CNSW+  K         KR+FF NK YLP QTP GL+ Y
Sbjct:   179 LEDINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSY 238

Query:   221 RAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTG 279
             R  +L   RG+G GER+  DR+YDYDVYNDLG+PD   +LARPVLGG KQ PYPRRCRTG
Sbjct:   239 RKNDLQQKRGDGTGEREADDRVYDYDVYNDLGNPDSNGDLARPVLGGNKQFPYPRRCRTG 298

Query:   280 RPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP---D 336
             RP    D  SE R+GN YVPRDE FS  K+  F  KTV SVL A VP+ ++  +D    +
Sbjct:   299 RPPSKKDPKSETRKGNVYVPRDEEFSPEKEDYFLRKTVGSVLQAAVPAAQSLLLDKLKWN 358

Query:   337 LGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDT-GDNILLFETPETMDRDK 395
             L FP F  ID LF +GV LP + +  F  +++PRL++ + DT  + IL FETP  + +DK
Sbjct:   359 LPFPSFFVIDKLFEDGVELPGVDKLNFLESVVPRLLEHLRDTPAEKILRFETPANIQKDK 418

Query:   396 FFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMIS 455
             F W RDEEF+R+TLAG+NPY+I L+ E+PLKS LDP +YGP ESAIT +L+E+++  +++
Sbjct:   419 FAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMT 478

Query:   456 VEE 458
             VEE
Sbjct:   479 VEE 481
GO:0009607 "response to biotic stimulus" evidence=ISS;IMP
GO:0009611 "response to wounding" evidence=ISS;IMP
GO:0016166 "phytoene dehydrogenase activity" evidence=ISS;IDA
GO:0051707 "response to other organism" evidence=ISS;IDA
TAIR|locus:2096915 LOX2 "lipoxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030215 LOX4 "lipoxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018848 LOX3 "lipoxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008808 LOX6 "lipoxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011030 LOX1 "lipoxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087837 LOX5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P29250 LOX1.1 "Linoleate 9S-lipoxygenase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.13.11.12LOW CONFIDENCE prediction!
3rd Layer1.13.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
PLN02264 919 PLN02264, PLN02264, lipoxygenase 1e-122
PLN02305 918 PLN02305, PLN02305, lipoxygenase 1e-121
PLN02337 866 PLN02337, PLN02337, lipoxygenase 1e-107
pfam00305 667 pfam00305, Lipoxygenase, Lipoxygenase 1e-84
cd01751137 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipox 1e-55
smart00308105 smart00308, LH2, Lipoxygenase homology 2 (beta bar 4e-18
pfam01477115 pfam01477, PLAT, PLAT/LH2 domain 2e-11
>gnl|CDD|215148 PLN02264, PLN02264, lipoxygenase Back     alignment and domain information 
 Score =  377 bits (970), Expect = e-122
 Identities = 187/431 (43%), Positives = 274/431 (63%), Gaps = 23/431 (5%)

Query: 49  IGSVPRNTIKAIATST--------EKSI--KVKAVVTVKPTVGGFLSNISLDQGLDDLGD 98
           + ++  + +K +  ST        EK++  KV+AVVTV+      L   +L + LD   D
Sbjct: 56  VAAISEDLVKTLRVSTVRKSEEEEEKAVKFKVRAVVTVRNKNKEDLKE-TLVKHLDAFTD 114

Query: 99  LFGKSLLLELVSAELDPKTGLDK----STIQDYARKIGADGDGNMQYESEFEVPSGFGEI 154
             G++++LEL+S ++DPKT   K    + ++D+++K     +  + Y +EF V S FG  
Sbjct: 115 KIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKKSNIKAE-RVHYTAEFTVDSAFGSP 173

Query: 155 GAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTP 214
           GAI V N+H KE +L+ I ++G   GPV+  CNSW+ S+ D+  KR+FFTN+ YLPS+TP
Sbjct: 174 GAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETP 233

Query: 215 DGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPR 274
            GL+  R +EL  LRG+G+G RK  DRIYD+DVYNDLG+PDK  ELARP LGGK+ PYPR
Sbjct: 234 AGLRALREKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPR 293

Query: 275 RCRTGRPRCDTDQFSEKREGN---FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETA 331
           RCRTGR   D+D  +E R       YVPRDE F E KQ TF+A  + +VLH L+PSL+ +
Sbjct: 294 RCRTGRLPTDSDMMAESRVEKPLPMYVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKAS 353

Query: 332 FVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLVKAIEDTGDNILLFETPET 390
            +  D  F  F  ID+L+ EG+ L    Q+  +    LP++V  ++++ + +L ++TP+ 
Sbjct: 354 ILAED--FANFGEIDSLYKEGLLLKLGFQDDIFKKFPLPKVVTTLQESSEGLLKYDTPKI 411

Query: 391 MDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEI 450
           + +DKF W RD+EF+RQ +AG+NP +I  +  +P  S LDPEIYGP  SA+T + I   +
Sbjct: 412 LSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHL 471

Query: 451 GGMISVEEVYE 461
            G+ SV++  E
Sbjct: 472 DGL-SVQQALE 481

Length = 919
>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase Back     alignment and domain information
>gnl|CDD|215193 PLN02337, PLN02337, lipoxygenase Back     alignment and domain information
>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase Back     alignment and domain information
>gnl|CDD|238849 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>gnl|CDD|214608 smart00308, LH2, Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>gnl|CDD|216521 pfam01477, PLAT, PLAT/LH2 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
PLN02305 918 lipoxygenase 100.0
PLN02337 866 lipoxygenase 100.0
PLN02264 919 lipoxygenase 100.0
PF00305 667 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Li 100.0
cd01751137 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase re 100.0
smart00308105 LH2 Lipoxygenase homology 2 (beta barrel) domain. 99.39
PF01477113 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxyg 99.16
cd00113116 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin 99.03
cd02899109 PLAT_SR Scavenger receptor protein. A subfamily of 98.92
cd01753113 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a u 98.64
cd01756120 PLAT_repeat PLAT/LH2 domain repeats of family of p 98.55
cd01752120 PLAT_polycystin PLAT/LH2 domain of polycystin-1 li 98.39
cd01757114 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 inter 98.39
cd01754129 PLAT_plant_stress PLAT/LH2 domain of plant-specifi 98.28
>PLN02305 lipoxygenase Back     alignment and domain information 
Probab=100.00  E-value=2.8e-131  Score=1078.91  Aligned_cols=391  Identities=45%  Similarity=0.838  Sum_probs=361.0

Q ss_pred             eEEeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCCCCCCCc---ccccccccccCCCCCCceeEEEE
Q 012542           68 IKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK---STIQDYARKIGADGDGNMQYESE  144 (461)
Q Consensus        68 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~l~G~~v~lqLVSs~~~~~tg~~k---~~l~~w~~~~~~~~~~~~~y~v~  144 (461)
                      ..++++|+|+++++..++.. .++++|+++|++|++|+|||||++.+|+||++|   ++|++|+++. ...+++++|+|+
T Consensus        82 ~~i~~~v~~~~~~~~~~~~~-~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~~-~~~~~~~~~~~~  159 (918)
T PLN02305         82 IDVRAVITIRKKIKEKITEK-FEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPKP-SNDPHIVEYAAD  159 (918)
T ss_pred             CeEEEEEEEEeecccchhhc-ccchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccCC-CCCCCceEEEEE
Confidence            78888888888877666553 257899999999999999999999999999554   8999999763 321667899999


Q ss_pred             EeccCCCCceeEEEEEecCCCceEEeEEEEecCCCCcEEEeeCccccCCCCCCcceEEeeCceeccCCCChhHHHHHHHH
Q 012542          145 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE  224 (461)
Q Consensus       145 f~v~~~fG~pgAi~V~n~h~~e~fl~~Itl~~~p~~~v~FpCnSWV~~~~~~~~~RiFF~nk~yLP~eTP~~L~~lRe~E  224 (461)
                      |+||++||+||||+|+|.|++||||++|+|+++|+|+|||+|||||||+++|+.+||||+||+|||++||++|++|||+|
T Consensus       160 f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~Re~e  239 (918)
T PLN02305        160 FTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRRED  239 (918)
T ss_pred             EeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccccCeeeecccccCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCccccCC---CCcCCCC
Q 012542          225 LTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREG---NFYVPRD  301 (461)
Q Consensus       225 L~~lRGdG~GeRk~~DRIYdYdvYNDLG~PD~~~~l~RPvLGG~~~PYPRRcRTGR~~~~~dp~~Esr~~---~~yvPrD  301 (461)
                      |++|||||+||||+||||||||||||||+||++++++||||||++||||||||||||||++||.+|||..   .+|||||
T Consensus       240 L~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPrD  319 (918)
T PLN02305        240 LLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRD  319 (918)
T ss_pred             HHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCCC
Confidence            9999999999999999999999999999999999999999999779999999999999999999999953   4799999


Q ss_pred             CCcchhhhcchhhhHHHHHHHhhhhhhhhhcCCCCCCCCCHHHHHHhhcCCCCCCCccccccccchhh-hhHHhhhccCc
Q 012542          302 EAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDTGD  380 (461)
Q Consensus       302 E~Fs~~K~~~F~~~~lk~~~~~~~p~l~~~~~~~~~~F~sf~dI~~Ly~~g~~lp~~~~~~~~~~~~~-~~~~~i~~~~~  380 (461)
                      |+|+++|+++|+++++|+++|+++|+|+++++.+..+|++|+||++||++|++||......+.+..+| .+.+.++++++
T Consensus       320 E~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~p~~~~~~~~i~~~~~  399 (918)
T PLN02305        320 ETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGLNPFLGNFMKQVLSVSE  399 (918)
T ss_pred             CCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhhhhhhcCCchHHHHHHhhhccc
Confidence            99999999999999999999999999999999889999999999999999999997422222231143 55555688899


Q ss_pred             cccccCCccccccccccccccHHHHHHHhhCCCchhhhhhccCCCCCCCCCCccCCCCCCccHHHHhhhcCCCCCHHHhh
Q 012542          381 NILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEVY  460 (461)
Q Consensus       381 ~~lkf~~P~vi~~d~~aW~~DeEFaRQ~LAGvNP~~I~rl~efP~~SkLDp~~YG~~~saIT~e~Ie~~L~G~~TveeAl  460 (461)
                      .+||||+|+||++|+++|++|+|||||||||+||++|+||+|||++|||||++||||+|+||+|||+++|+| +||||||
T Consensus       400 ~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~TleeAl  478 (918)
T PLN02305        400 RLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-MTVEKAI  478 (918)
T ss_pred             ccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-CcHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 9999998


Q ss_pred             C
Q 012542          461 E  461 (461)
Q Consensus       461 ~  461 (461)
                      +
T Consensus       479 ~  479 (918)
T PLN02305        479 E  479 (918)
T ss_pred             H
Confidence            5

>PLN02337 lipoxygenase Back     alignment and domain information
>PLN02264 lipoxygenase Back     alignment and domain information
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1 Back     alignment and domain information
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1 Back     alignment and domain information
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain Back     alignment and domain information
>cd02899 PLAT_SR Scavenger receptor protein Back     alignment and domain information
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase Back     alignment and domain information
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function Back     alignment and domain information
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins Back     alignment and domain information
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family Back     alignment and domain information
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
2iuj_A 853 Crystal Structure Of Soybean Lipoxygenase-B Length 3e-69
1rov_A 857 Lipoxygenase-3 Treated With Cumene Hydroperoxide Le 8e-63
1ik3_A 857 Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydrope 9e-63
3bnc_A 839 Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 1e-60
3bne_A 839 Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 1e-60
3bnb_A 839 Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 1e-60
3bnd_A 839 Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 1e-60
3pzw_A 839 Soybean Lipoxygenase-1 - Re-Refinement Length = 839 1e-60
1fgo_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Leng 1e-60
1fgm_A 839 Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Leng 1e-60
1y4k_A 839 Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Leng 1e-60
1fgr_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Leng 1e-60
1fgq_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Leng 1e-60
2sbl_B 839 The Three-Dimensional Structure Of An Arachidonic A 1e-60
1fgt_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Leng 1e-60
2iuk_A 864 Crystal Structure Of Soybean Lipoxygenase-D Length 2e-59
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B Length = 853 Back     alignment and structure 
Iteration: 1

 Score =  258 bits (660), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 143/324 (44%), Positives = 193/324 (59%), Gaps = 6/324 (1%)
Query: 141 YESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQK 199
           Y+++F+  S FG  GA  ++N    E YLK ++L+ +PN G ++  CNSW+++    K  
Sbjct: 95  YDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTD 154
Query: 200 RVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPE 259
           R+FF N  YLPS+TP  L +YR EEL  +RG+G GERK +DRIYDYDVYNDLGDPDK  +
Sbjct: 155 RIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEK 214
Query: 260 LARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYS 319
            ARPVLGG   PYPRR RTGR +   D  SEK     Y+PRDEAF  +K   F A  + S
Sbjct: 215 YARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPGDFVYLPRDEAFGHLKSSDFLAYGIKS 274
Query: 320 VLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIED 377
           V   ++P L  AF      L F  F+ +  L+  GV LP         T +P + +    
Sbjct: 275 VAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVTLPTNFLSNI--TPIPIIKELFRT 332
Query: 378 TGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP 437
            G+  L +  P+ M  DK  W  DEEF+R+T+AGLNP  I++I E+PL S LD + YG  
Sbjct: 333 DGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDH 392
Query: 438 ESAITTELIEKEIGGMISVEEVYE 461
              IT E +E  +GG+ +VE+  +
Sbjct: 393 TCIITKEHLEPNLGGL-TVEQAIQ 415
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide Length = 857 Back     alignment and structure
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy- 9(Z),11(E)-Octadecadienoic Acid Length = 857 Back     alignment and structure
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 Back     alignment and structure
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 Back     alignment and structure
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 Back     alignment and structure
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 Back     alignment and structure
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement Length = 839 Back     alignment and structure
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Length = 839 Back     alignment and structure
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Length = 839 Back     alignment and structure
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Length = 839 Back     alignment and structure
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Length = 839 Back     alignment and structure
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Length = 839 Back     alignment and structure
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15- Lipoxygenase Length = 839 Back     alignment and structure
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Length = 839 Back     alignment and structure
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D Length = 864 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 1e-147
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 1e-141
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 1e-135
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 4e-23
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 6e-21
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 4e-18
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 2e-16
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 5e-16
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 5e-08
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Length = 839 Back     alignment and structure
 Score =  440 bits (1132), Expect = e-147
 Identities = 146/393 (37%), Positives = 201/393 (51%), Gaps = 12/393 (3%)

Query: 66  KSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQ 125
              K+K  V + P     ++       +D+L    G+S+ L+L+SA      G  K    
Sbjct: 4   AGHKIKGTVVLMPKNELEVNPDG--SAVDNLNAFLGRSVSLQLISATKADAHGKGKVGKD 61

Query: 126 DYARK----IGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-G 180
            +       +   G G   +   FE     G  GA  ++N    E +LK + L+ + N G
Sbjct: 62  TFLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQG 121

Query: 181 PVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYD 240
            +   CNSW+++    K  R+FF N  Y+PS+TP  L  YR EEL  LRGNG GERK YD
Sbjct: 122 TIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYD 181

Query: 241 RIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREGNFYVP 299
           RIYDYDVYNDLG+PDK  +LARPVLGG    PYPRR RTGR    TD  +EK+   FYVP
Sbjct: 182 RIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVP 241

Query: 300 RDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--DPDLGFPYFSAIDALFNEGVNLPP 357
           RDE    +K          S+   + P+ E+AF      + F  F  +  L+  G+ LP 
Sbjct: 242 RDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP- 300

Query: 358 LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSI 417
            +        LP + +     G +IL F  P  +   +  W  DEEF+R+ +AG+NP  I
Sbjct: 301 -RDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVI 359

Query: 418 RLITEWPLKSTLDPEIYGPPESAITTELIEKEI 450
           R + E+P KS LDP IYG   S IT + ++ + 
Sbjct: 360 RGLEEFPPKSNLDPAIYGDQSSKITADSLDLDG 392
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Length = 864 Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Length = 853 Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Length = 573 Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Length = 1066 Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Length = 662 Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Length = 696 Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Length = 691 Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Length = 541 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Length = 698 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 100.0
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 100.0
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 100.0
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 100.0
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 100.0
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 100.0
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 100.0
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 100.0
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 99.96
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 99.58
2wxu_A370 Phospholipase C; cytolysis, hydrolase, hemolysis, 98.78
1olp_A370 Alpha-toxin; zinc phospholipase C, GAS gangrene de 98.77
3cwz_B384 RAB6IP1, RAB6-interacting protein 1; RAB small GTP 97.72
1hpl_A449 Lipase; hydrolase(carboxylic esterase); 2.30A {Equ 82.21
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Back     alignment and structure
Probab=100.00  E-value=5.9e-123  Score=1018.94  Aligned_cols=401  Identities=36%  Similarity=0.658  Sum_probs=357.5

Q ss_pred             CCcceeeeEEeeeee-eEEeEEEEeeccc-----cCcccc-c-ccccccchhhhccCCcEEEEEEeeecCCCCCCCc---
Q 012542           53 PRNTIKAIATSTEKS-IKVKAVVTVKPTV-----GGFLSN-I-SLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK---  121 (461)
Q Consensus        53 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~-----~~~~~~-~-~~~~~~d~~~~l~G~~v~lqLVSs~~~~~tg~~k---  121 (461)
                      ..++++|+|++|+++ +++++..++++..     ++.+.. . .+++++|+++|++|++|+|||||++.+|+||++|   
T Consensus         7 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqlvs~~~~~~~~~~k~~~   86 (864)
T 2iuk_A            7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGK   86 (864)
T ss_dssp             -CCCEEEEEEEEEGGGSCHHHHTTC-----------------------CCSGGGSCSTTEEEEEEEEEEECSSSCEEEEE
T ss_pred             CCCEEEEEEEEEecccccccccccccccccccccccccccccccccchhhhHHHhccCeEEEEEEecccCCCCCCCcCCC
Confidence            456899999999987 7766544222111     111110 0 1257899999999999999999999999999884   


Q ss_pred             -ccccccccccCCCCCCceeEEEEEeccCCCCceeEEEEEecCCCceEEeEEEEecCC-CCcEEEeeCccccCCCCCCcc
Q 012542          122 -STIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLP-NGPVNVTCNSWLHSKHDNKQK  199 (461)
Q Consensus       122 -~~l~~w~~~~~~~~~~~~~y~v~f~v~~~fG~pgAi~V~n~h~~e~fl~~Itl~~~p-~~~v~FpCnSWV~~~~~~~~~  199 (461)
                       +.|++|.......++++++|+|+|+||++||+||||+|+|+|++||||++|+|+++| +|+|||+||||||++++|+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~fg~pgA~~v~n~~~~e~~l~~~~l~~~~~~~~~~f~cnswv~~~~~~~~~  166 (864)
T 2iuk_A           87 EVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKN  166 (864)
T ss_dssp             EEECCEEECSCSSCCTTCEEEEEEECCCSTTCCEEEEEEEECSSSCEEEEEEEEECCSSSCCEEEEEEEEECBGGGSSSC
T ss_pred             cccccccccCCCcCCCCcEEEEEEEEeeccCCCcceEEEEeCCCCceEEEEEEEecCCCCCcEEEecCccccCCCCCCCC
Confidence             999999944334567889999999999999999999999999999999999999999 599999999999999999999


Q ss_pred             eEEeeCceeccCCCChhHHHHHHHHHHHHhcCCCCCccccCeeeecccccCCCCCCCCCCCcccccCC-CCCCCCCccCC
Q 012542          200 RVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRT  278 (461)
Q Consensus       200 RiFF~nk~yLP~eTP~~L~~lRe~EL~~lRGdG~GeRk~~DRIYdYdvYNDLG~PD~~~~l~RPvLGG-~~~PYPRRcRT  278 (461)
                      ||||+||+|||++||++|++|||+||++|||||+||||+||||||||||||||+||++++  |||||| ++|||||||||
T Consensus       167 RifF~n~~ylp~~tp~~l~~~R~~el~~lrg~g~g~rk~~driydyd~yndlg~pd~~~~--rpvlggs~~~pyPrR~rt  244 (864)
T 2iuk_A          167 RIFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILGGCSIYPYPLRVRT  244 (864)
T ss_dssp             EEEEBSCCCCTTTSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCCSCBGGGTBC--CCCBSSSSSSCCCCEECC
T ss_pred             ceeccCCCcCcccCcHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhcCCCcccCCC--CcccCCCCCCCCCccccC
Confidence            999999999999999999999999999999999999999999999999999999999988  999999 99999999999


Q ss_pred             CCCCCCCCCCccccCCCCcCCCCCCcchhhhcchhhhHHHHHHHhhhhhhhhhcC--C-CCCCCCCHHHHHHhhcCCCCC
Q 012542          279 GRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--D-PDLGFPYFSAIDALFNEGVNL  355 (461)
Q Consensus       279 GR~~~~~dp~~Esr~~~~yvPrDE~Fs~~K~~~F~~~~lk~~~~~~~p~l~~~~~--~-~~~~F~sf~dI~~Ly~~g~~l  355 (461)
                      ||||+++||.+|||.. +||||||+|++.|+++|.++++++++|.++|+|+++++  + +..+|++|+||++||++|++|
T Consensus       245 gr~~~~~dp~~e~~~~-~yvPrDe~F~~~K~~~f~~~~~k~~~~~~~p~l~~~~~~~~~~~~~f~sf~di~~ly~~g~~l  323 (864)
T 2iuk_A          245 GRERTRTDPNSEKPGE-VYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKL  323 (864)
T ss_dssp             CCCBCSSCTTSBCCCC-CCCCGGGSCCCSSGGGCHHHHHHHHHHTTHHHHHHHHHSSCSSCSSCCSHHHHHTTTSSCEEC
T ss_pred             CCCCCCCCCCcccccc-CCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHhccccC
Confidence            9999999999999975 99999999999999999999999999999999999884  2 577999999999999999999


Q ss_pred             CCccccccccch--hhhhHHhhhccCccccccCCccccccccccccccHHHHHHHhhCCCchhhhhhccCCCCCCCCCCc
Q 012542          356 PPLKQEGFWNTL--LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEI  433 (461)
Q Consensus       356 p~~~~~~~~~~~--~~~~~~~i~~~~~~~lkf~~P~vi~~d~~aW~~DeEFaRQ~LAGvNP~~I~rl~efP~~SkLDp~~  433 (461)
                      |.   . .++.+  ++.+++++++++++++|||+|++|++|+++|++|+|||||+|||+||++|++|++||++|||||++
T Consensus       324 ~~---~-~~~~~~p~~~~~~~~~~~~e~~lk~p~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~  399 (864)
T 2iuk_A          324 PT---D-ILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTL  399 (864)
T ss_dssp             CH---H-HHHHHSSCTTTTTTCBCTTSSEEBCCCCSSCSCSSSSSSCHHHHHHHHHHSSSCSCCEECSSSSCCCCSCHHH
T ss_pred             ch---h-hhcccCcHHHHHHHhhccccchhcCCCcceecccchhhhchHHHHHHHhcCCCchhhhhhhccCCcccCChhh
Confidence            86   2 33333  345667777889999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccHHHHhhhcCCCCCHHHhhC
Q 012542          434 YGPPESAITTELIEKEIGGMISVEEVYE  461 (461)
Q Consensus       434 YG~~~saIT~e~Ie~~L~G~~TveeAl~  461 (461)
                      ||+|+|+||+|||+.+|+| +||+|||+
T Consensus       400 yg~~~s~it~e~i~~~l~g-~tl~eal~  426 (864)
T 2iuk_A          400 YGDQTSTITKEQLEINMGG-VTVEEALS  426 (864)
T ss_dssp             HCCCCCCCCHHHHGGGTTT-CCHHHHHH
T ss_pred             cCCcccccCHHHHhhccCC-CcHHHHHh
Confidence            9999999999999999999 99999984
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Back     alignment and structure
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A Back     alignment and structure
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3 Back     alignment and structure
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus} Back     alignment and structure
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 461
d3bnea1 690 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal dom 1e-115
d3bnea2143 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Gl 1e-46
d2p0ma1 551 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Ory 6e-19
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 690 Back     information, alignment and structure

class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

 Score =  351 bits (903), Expect = e-115
 Identities = 108/245 (44%), Positives = 141/245 (57%), Gaps = 7/245 (2%)

Query: 209 LPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGK 268
           +PS+TP  L  YR EEL  LRGNG GERK YDRIYDYDVYNDLG+PDK  +LARPVLGG 
Sbjct: 1   VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGS 60

Query: 269 QN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPS 327
              PYPRR RTGR    TD  +EK+   FYVPRDE    +K          S+   + P+
Sbjct: 61  STFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPA 120

Query: 328 LETAFV--DPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLVKAIEDTGDNILL 384
            E+AF      + F  F  +  L+  G+ LP   ++     + LP + +     G +IL 
Sbjct: 121 FESAFDLKSTPIEFHSFQDVHDLYEGGIKLP---RDVISTIIPLPVIKELYRTDGQHILK 177

Query: 385 FETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTE 444
           F  P  +   +  W  DEEF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT +
Sbjct: 178 FPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITAD 237

Query: 445 LIEKE 449
            ++ +
Sbjct: 238 SLDLD 242
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 143 Back     information, alignment and structure
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 551 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
d3bnea1 690 Lipoxigenase, C-terminal domain {Soybean (Glycine 100.0
d3bnea2143 Plant lipoxigenase {Soybean (Glycine max), isozyme 100.0
d2p0ma1 551 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 99.94
d2p0ma2111 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 98.45
d1olpa2121 Alpha-toxin, C-terminal domain {Clostridium absonu 98.3
d1ca1a2121 Alpha-toxin, C-terminal domain {Clostridium perfri 98.06
d1rp1a1113 Pancreatic lipase, C-terminal domain {Dog (Canis f 95.87
d1bu8a1114 Pancreatic lipase, C-terminal domain {Rat (Rattus 95.76
d1gpla1112 Pancreatic lipase, C-terminal domain {Guinea pig ( 92.13
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=100.00  E-value=1.6e-86  Score=718.16  Aligned_cols=247  Identities=45%  Similarity=0.765  Sum_probs=234.4

Q ss_pred             ccCCCChhHHHHHHHHHHHHhcCCCCCccccCeeeecccccCCCCCCCCCCCcccccCC-CCCCCCCccCCCCCCCCCCC
Q 012542          209 LPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQ  287 (461)
Q Consensus       209 LP~eTP~~L~~lRe~EL~~lRGdG~GeRk~~DRIYdYdvYNDLG~PD~~~~l~RPvLGG-~~~PYPRRcRTGR~~~~~dp  287 (461)
                      ||++||++|++|||+||++|||||+||||+||||||||||||||+||++++++|||||| ++||||||||||||||++||
T Consensus         1 lp~~tp~~l~~~r~~el~~lrg~g~g~~~~~driydy~~yndlg~pd~~~~~~rp~lgg~~~~pyprr~rtgr~~~~~dp   80 (690)
T d3bnea1           1 VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDP   80 (690)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCT
T ss_pred             CCccccHHHHHHHHHHHHHhCCCCCCCCCcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999 78999999999999999999


Q ss_pred             CccccCCCCcCCCCCCcchhhhcchhhhHHHHHHHhhhhhhhhhcC--CCCCCCCCHHHHHHhhcCCCCCCCcccccccc
Q 012542          288 FSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--DPDLGFPYFSAIDALFNEGVNLPPLKQEGFWN  365 (461)
Q Consensus       288 ~~Esr~~~~yvPrDE~Fs~~K~~~F~~~~lk~~~~~~~p~l~~~~~--~~~~~F~sf~dI~~Ly~~g~~lp~~~~~~~~~  365 (461)
                      .+|||...+||||||+|+++|+++|+++++|+++|+++|.|+++++  .+.++|+||+||++||++|+++|..   .+.+
T Consensus        81 ~~e~r~~~~yvPrde~f~~~k~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~f~~f~~i~~ly~~g~~~~~~---~~~~  157 (690)
T d3bnea1          81 NTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRD---VIST  157 (690)
T ss_dssp             TSBCCCSSCCCCGGGSCCCSSGGGCHHHHHHHHHHTHHHHHHHHHHTTSSCSSCCSHHHHHGGGTTCEECCHH---HHHH
T ss_pred             CcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccCchh---hhhh
Confidence            9999999999999999999999999999999999999999999875  4678999999999999999998842   2233


Q ss_pred             ch-hhhhHHhhhccCccccccCCccccccccccccccHHHHHHHhhCCCchhhhhhccCCCCCCCCCCccCCCCCCccHH
Q 012542          366 TL-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTE  444 (461)
Q Consensus       366 ~~-~~~~~~~i~~~~~~~lkf~~P~vi~~d~~aW~~DeEFaRQ~LAGvNP~~I~rl~efP~~SkLDp~~YG~~~saIT~e  444 (461)
                      .+ ++.++++++++++.+||||+|+||++|++||++|+|||||+|||+||++|+||++||++|+|||++||+++|+||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~W~~D~eFarQ~LaG~NP~~Irr~~e~P~~~~l~~~~~g~~~s~it~~  237 (690)
T d3bnea1         158 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITAD  237 (690)
T ss_dssp             HTTSTTGGGGCEECSSSEEECCCCGGGSSCSSGGGSHHHHHHHHHHSSSTTCCEECCSSSCCCCSCHHHHCCCCCCCCGG
T ss_pred             cccHHHHHHHhhccccceeecCCchhhhccccccccHHHHHHHHhcCCCchheeeccccCCcCCCCHHHhCchhhhhhHh
Confidence            33 67889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCHHHhhC
Q 012542          445 LIEKEIGGMISVEEVYE  461 (461)
Q Consensus       445 ~Ie~~L~G~~TveeAl~  461 (461)
                      ||+  ++| +||+|||+
T Consensus       238 ~i~--l~G-~Tl~~Al~  251 (690)
T d3bnea1         238 SLD--LDG-YTMDEALG  251 (690)
T ss_dssp             GCC--CTT-CCHHHHHH
T ss_pred             hhc--cCc-cHHHHHHH
Confidence            996  789 99999984
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium absonum [TaxId: 29369]} Back     information, alignment and structure
>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]} Back     information, alignment and structure
>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gpla1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Guinea pig (Cavia porcellus) [TaxId: 10141]} Back     information, alignment and structure