Citrus Sinensis ID: 012545
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 461 | 2.2.26 [Sep-21-2011] | |||||||
| Q43497 | 433 | Monodehydroascorbate redu | N/A | no | 0.939 | 1.0 | 0.785 | 0.0 | |
| Q40977 | 433 | Monodehydroascorbate redu | N/A | no | 0.932 | 0.993 | 0.763 | 0.0 | |
| Q42711 | 434 | Monodehydroascorbate redu | N/A | no | 0.941 | 1.0 | 0.774 | 0.0 | |
| Q9LFA3 | 434 | Probable monodehydroascor | yes | no | 0.941 | 1.0 | 0.735 | 0.0 | |
| Q93WJ8 | 435 | Probable monodehydroascor | no | no | 0.937 | 0.993 | 0.721 | 0.0 | |
| Q9SR59 | 441 | Probable monodehydroascor | no | no | 0.934 | 0.977 | 0.649 | 1e-161 | |
| Q9LK94 | 488 | Probable monodehydroascor | no | no | 0.919 | 0.868 | 0.517 | 1e-123 | |
| P92947 | 493 | Monodehydroascorbate redu | no | no | 0.876 | 0.819 | 0.451 | 2e-98 | |
| P83966 | 166 | Monodehydroascorbate redu | N/A | no | 0.308 | 0.855 | 0.605 | 1e-51 | |
| P16640 | 422 | Putidaredoxin reductase O | yes | no | 0.793 | 0.867 | 0.270 | 4e-27 |
| >sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/461 (78%), Positives = 394/461 (85%), Gaps = 28/461 (6%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEKSFKYVI+GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG
Sbjct: 1 MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGER LPEWY EKGI LILSTEIV+AD+ASKTL+SA G FKYQ LVI
Sbjct: 61 ARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVI 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATG+TV L+L+DFGV+GAD+KNIFYLREIDDAD+
Sbjct: 121 ATGTTV---------------------------LKLSDFGVQGADSKNIFYLREIDDADQ 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
LVEA+KAKKNGKAVVVGGGYIGLELSA L++NNI+V+MVYPEPWCMPRLFT IAAFYEG
Sbjct: 154 LVEALKAKKNGKAVVVGGGYIGLELSAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEG 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YY NKG+ IIKGTVAVGF T+ +GEVKEVKLKDGR LEADIVVVGVG RPL +LFKGQV
Sbjct: 214 YYKNKGVNIIKGTVAVGFDTHPNGEVKEVKLKDGRVLEADIVVVGVGARPLTTLFKGQVE 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGI+TD FFKTS DVYAVGDVATFP+K+Y E+RRVEHVDH+RKSAEQAVK I A+E
Sbjct: 274 EEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASE 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GK+V YDYLPYFYSRAFDLSWQFYGDNVG+TVLFGD D SATHKFG YWIKDGK+VG
Sbjct: 334 QGKSVDEYDYLPYFYSRAFDLSWQFYGDNVGETVLFGDADPNSATHKFGQYWIKDGKIVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
FLESG+PEENKAIAKVA+VQP +LD L EG+SFASKI
Sbjct: 394 AFLESGSPEENKAIAKVAKVQPPA-TLDQLAQEGISFASKI 433
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Solanum lycopersicum (taxid: 4081) EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4 |
| >sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/457 (76%), Positives = 380/457 (83%), Gaps = 27/457 (5%)
Query: 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP 64
SFKY+I+GGGVSAGYAAREF KQGV PGELAIISKEAVAPYERPALSKAYLFPE ARLP
Sbjct: 4 SFKYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFPESPARLP 63
Query: 65 GFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124
GFH CVGSGGERLLPEWY EKGI+L LSTEIV AD+A+K L SA G F YQ LVIATGS
Sbjct: 64 GFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGS 123
Query: 125 TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEA 184
V +RLTDFGV GA+AKNIFYLRE+DDADKL EA
Sbjct: 124 AV---------------------------IRLTDFGVIGANAKNIFYLREVDDADKLYEA 156
Query: 185 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 244
IK KKN K VVVGGGYIGLELSA LK+N++DV+MVYPEPWCMPRLFT++IAAFYEGYYAN
Sbjct: 157 IKRKKNAKRVVVGGGYIGLELSAVLKLNDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYAN 216
Query: 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKG 304
KGI IIKGTVAVGFT N+DGEVKEVKLKDGR LEADIV+VGVGGRP ISLFKGQV E G
Sbjct: 217 KGINIIKGTVAVGFTANSDGEVKEVKLKDGRVLEADIVIVGVGGRPQISLFKGQVEEQHG 276
Query: 305 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 364
GI+TD FFKTS DVYAVGDVATFP+KLY ++RRVEHVDHARKSAEQA K I A + GK+
Sbjct: 277 GIKTDSFFKTSVPDVYAVGDVATFPLKLYNDVRRVEHVDHARKSAEQAAKAIFAADVGKS 336
Query: 365 VTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLE 424
V YDYLPYFYSR+FDLSWQFYGDNVG+TVLFGDND AS+ KFGTYWIK+GKVVG FLE
Sbjct: 337 VEEYDYLPYFYSRSFDLSWQFYGDNVGETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLE 396
Query: 425 SGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
GTP+ENKAIAKVAR +P+VE ++ L EGLSFASKI
Sbjct: 397 GGTPDENKAIAKVARAKPAVEDVNQLAEEGLSFASKI 433
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/461 (77%), Positives = 392/461 (85%), Gaps = 27/461 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MA+++FKYVILGGGV+AGYAAREF KQG+ PGELAIISKEAVAPYERPALSKAYLFPE
Sbjct: 1 MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFPESP 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLP+WYKEKGIELILSTEIV AD+ +K L SA G I+ YQ L+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTLII 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGSTV ++L+DFGV+GADAKNIFYLREIDDAD+
Sbjct: 121 ATGSTV---------------------------IKLSDFGVQGADAKNIFYLREIDDADQ 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
LVEAIKAK+NGK VVVGGGYIGLEL AAL+INN DVSMVYPEPWCMPRLFT +IAAFYEG
Sbjct: 154 LVEAIKAKENGKVVVVGGGYIGLELGAALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEG 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YYA KGI IIKGTVAVGFT + +GEVKEVKLKDGR LEADIVVVGVG RPL SLFKGQ+
Sbjct: 214 YYAQKGITIIKGTVAVGFTVDTNGEVKEVKLKDGRVLEADIVVVGVGARPLTSLFKGQIV 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGI+TD+FFKTS DVYAVGDVATFP+KLY E+RRVEHVDH+RKSAEQAVK I A+E
Sbjct: 274 EEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLYNELRRVEHVDHSRKSAEQAVKAIKASE 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GK + YDYLPYFYSR+FDLSWQFYGDNVGD VLFGDN SATHKFG+YWIKDGKVVG
Sbjct: 334 EGKAIEEYDYLPYFYSRSFDLSWQFYGDNVGDAVLFGDNSPDSATHKFGSYWIKDGKVVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
FLESG+PEENKAIAKVAR+QPSVES D+L EG+SFASK+
Sbjct: 394 AFLESGSPEENKAIAKVARIQPSVESSDLLLKEGISFASKV 434
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/461 (73%), Positives = 390/461 (84%), Gaps = 27/461 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEKSFKY+ILGGGVSAGYAA+EFA QGV+PGELA+ISKEAVAPYERPALSK YLFPEG
Sbjct: 1 MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFH CVGSGGE+LLPE YK+KGIELILSTEIV+AD+++K+L+SATG +FKYQ L+I
Sbjct: 61 ARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLII 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGSTV LRLTDFGV+GAD+KNI YLREIDDADK
Sbjct: 121 ATGSTV---------------------------LRLTDFGVKGADSKNILYLREIDDADK 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
LVEAIKAKK GKAVVVGGGYIGLELSA L+INN+DV+MV+PEPWCMPRLFTADIAAFYE
Sbjct: 154 LVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPWCMPRLFTADIAAFYET 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YY NKG+KIIKGTVA GFT +GEVKEV+LKDGRTLEADIV+VGVG +PL SLFKGQV
Sbjct: 214 YYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLFKGQVE 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E+KGGI+TD FFKTS DVYAVGDVATFP+K+Y ++RRVEHVDH+RKSAEQAVK I A E
Sbjct: 274 EDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDHSRKSAEQAVKAIKAAE 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GG V YDYLP+FYSR+FDLSWQFYGDNVGD+VLFGD++ ++ +FG YW++ GKVVG
Sbjct: 334 GGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDSVLFGDSNPSNPKPRFGAYWVQGGKVVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
F+E G+ +ENKA+AKVA+ +PS ESLD L +G+SFA+KI
Sbjct: 394 AFMEGGSGDENKALAKVAKARPSAESLDELVKQGISFAAKI 434
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/459 (72%), Positives = 372/459 (81%), Gaps = 27/459 (5%)
Query: 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
EKSFKYVI+GGGV+AGYAAREF QGVKPGELAIIS+E V PYERPALSK Y+ E A
Sbjct: 4 EKSFKYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKAT 63
Query: 63 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
LP F+V G GGER P+WYKEKGIELIL TEIV+AD+A+KTL+S TG +FKYQ L+ AT
Sbjct: 64 LPNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAAT 123
Query: 123 GSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLV 182
GS+V +RL+DFGV GADAKNIFYLRE++DAD L
Sbjct: 124 GSSV---------------------------IRLSDFGVPGADAKNIFYLRELEDADYLA 156
Query: 183 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242
A++ K+ GKAVVVGGGYIGLEL AALK NN+DV+MVYPEPWCMPRLFTA IA+FYEGYY
Sbjct: 157 YAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCMPRLFTAGIASFYEGYY 216
Query: 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN 302
ANKGI I+KGTVA GFTTN++GEV EVKLKDGRTLEADIV+VGVGGRP+ISLFK QV E
Sbjct: 217 ANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLFKDQVEEE 276
Query: 303 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362
KGG++TD FFKTS DVYA+GDVATFPMKLY EMRRVEHVDHARKSAEQAVK I A E G
Sbjct: 277 KGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHARKSAEQAVKAIKAAEEG 336
Query: 363 KTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVF 422
++ YDYLPYFYSRAFDLSWQFYGDNVG++VLFGDND S KFG+YWIK+ KVVG F
Sbjct: 337 NSIPEYDYLPYFYSRAFDLSWQFYGDNVGESVLFGDNDPESPKPKFGSYWIKERKVVGAF 396
Query: 423 LESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
LE G+PEEN AIAK+AR QPSVESL+VL EGLSFA+ I
Sbjct: 397 LEGGSPEENNAIAKLARAQPSVESLEVLSKEGLSFATNI 435
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 298/459 (64%), Positives = 356/459 (77%), Gaps = 28/459 (6%)
Query: 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
EKS+KYVI+GGGV+ GYAAREF+ QG+KPGELAIISKE V P+ERP L+K Y+ E
Sbjct: 4 EKSYKYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPT 63
Query: 63 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
L +VC G+G + P WYKEKGI+LI+ TEIV+AD+ASKTL+S G I+KYQ L+IAT
Sbjct: 64 LANIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIAT 123
Query: 123 GSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLV 182
GST +RL++ GV+ AD KNIFYLREI+D+D+L
Sbjct: 124 GSTN---------------------------IRLSEIGVQEADVKNIFYLREIEDSDELA 156
Query: 183 EAIKAK-KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 241
A++ + GKAV++GGG++GLE+S+AL+ NN +V+MV+PEPW + R FTA+IA+FYE Y
Sbjct: 157 LAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPWLVHRFFTAEIASFYESY 216
Query: 242 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE 301
YANKGIKIIKGTVA GF+TN+DGEV EVKL+DGRTLEA+IVV GVG RP SLFKGQ+ E
Sbjct: 217 YANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATSLFKGQLEE 276
Query: 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 361
KGGI+TD FFKTS DVYA+GDVATFPMK+Y RRVEH D+ARKSA QAVK I A E
Sbjct: 277 EKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKSAAQAVKAIKAGEE 336
Query: 362 GKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 421
GKT+ YDYLPYFYSR F LSW+FYG+NVG++VLFGDND S KFGTYW+KDGKVVGV
Sbjct: 337 GKTIPDYDYLPYFYSRFFKLSWEFYGENVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGV 396
Query: 422 FLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASK 460
FLE GT EE+KAIAKVAR QPSVESLDVL EGLSFA+K
Sbjct: 397 FLEGGTQEEHKAIAKVARAQPSVESLDVLSEEGLSFATK 435
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/460 (51%), Positives = 309/460 (67%), Gaps = 36/460 (7%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
++F YVILGGGV+AGYAA EF ++GV GEL IIS+E VAPYERPALSK +L PE ARL
Sbjct: 3 RAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPARL 62
Query: 64 PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
P FH CVG+ E+L P+WYK+ GIEL+L T + D+ KTLLS+TG Y+ L+IATG
Sbjct: 63 PSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATG 122
Query: 124 STVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVE 183
+ + L+L +FGVEG+DA+N+ YLR++ DA++L
Sbjct: 123 A---------------------------RALKLEEFGVEGSDAENVCYLRDLADANRLAT 155
Query: 184 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243
I++ NG AVV+GGGYIG+E +A+L IN I+V+MV+PE CM RLFT IA+ YE YY
Sbjct: 156 VIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASLYEDYYR 215
Query: 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 303
KG+K IKGTV F +++ +V V LKDG L AD+VVVG+G RP SLF+GQ+ K
Sbjct: 216 AKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEK 275
Query: 304 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363
GGI+ + ++S VYA+GDVATFP+KL+ EMRR+EHVD ARKSA AV IM
Sbjct: 276 GGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARKSARHAVSAIM----DP 331
Query: 364 TVTG-YDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVF 422
TG +DYLP+FYSR F SWQFYGD GD V FG+ + + FG YW+K G +VG F
Sbjct: 332 IKTGDFDYLPFFYSRVFAFSWQFYGDPTGDVVHFGEYEDGKS---FGAYWVKKGHLVGSF 388
Query: 423 LESGTPEENKAIAKVARVQPSVE-SLDVLKNEGLSFASKI 461
LE GT EE + I+K +++P+V L+ L+ EGL FA +
Sbjct: 389 LEGGTKEEYETISKATQLKPAVTIDLEELEREGLGFAHTV 428
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 206/456 (45%), Positives = 275/456 (60%), Gaps = 52/456 (11%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--E 58
A ++ ++VI+GGG +AGYAAR F + G+ G L I++KEA APYERPAL+KAYLFP +
Sbjct: 56 FANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEK 115
Query: 59 GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
ARLPGFH CVG GGER P+WYKEKGIE+I + AD +TL + G KY L
Sbjct: 116 KPARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSL 175
Query: 119 VIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDA 178
+IATG T S R D G + Y+RE+ DA
Sbjct: 176 IIATGCTAS---------------------------RFPD--KIGGHLPGVHYIREVADA 206
Query: 179 DKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 238
D L+ ++ K K V+VGGGYIG+E++AA N+D ++V+PE + RLFT +A Y
Sbjct: 207 DSLIASLGKAK--KIVIVGGGYIGMEVAAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKY 264
Query: 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ 298
E Y G+K +KG +DG V VKL DG T+EAD VV+G+G +P I F+
Sbjct: 265 EELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFE-T 323
Query: 299 VAENK--GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 356
+A NK GGI+ D F+TS ++A+GDVA FP+K+Y M RVEHVDHAR+SA+ VK++
Sbjct: 324 LAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSL 383
Query: 357 MATEGGKTVTGYDYLPYFYSRAFDLS-------WQFYGDNVGDTVLFGDNDLASATHKFG 409
+ YDYLPYFYSR F+ WQF+GDNVG+TV G+ D K
Sbjct: 384 LTAH----TDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEVGNFD-----PKIA 434
Query: 410 TYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVE 445
T+WI+ G++ GV +ESG+PEE + + K+AR QP V+
Sbjct: 435 TFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVD 470
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|P83966|MDARF_CUCSA Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/190 (60%), Positives = 128/190 (67%), Gaps = 48/190 (25%)
Query: 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVY 320
+AD V+ +KLKDGRTL+ADIVVVGVGGRPL+SLFK TS DVY
Sbjct: 23 DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLFK-----------------TSIPDVY 65
Query: 321 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFD 380
AVGDVAT+P+KLY E+RRVEHVDHAR S E+ YDYLPYFYSR F+
Sbjct: 66 AVGDVATYPLKLYNELRRVEHVDHARLSIEE----------------YDYLPYFYSRTFN 109
Query: 381 LSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV 440
L+WQFYGDNVG+TVLF DN FGTYWI KVVGVFLE GTP+E KVARV
Sbjct: 110 LAWQFYGDNVGETVLFPDN--------FGTYWI---KVVGVFLEGGTPDE----YKVARV 154
Query: 441 QPSVESLDVL 450
QP VESLD L
Sbjct: 155 QPPVESLDQL 164
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 185/414 (44%), Gaps = 48/414 (11%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
VI+G G++ A G + G + ++ V P+ P LSKAYL + TA
Sbjct: 8 VIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66
Query: 69 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSI 128
P+ Y + I+L+ T++ + + ++ + G Y LV+ATG
Sbjct: 67 ----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRP-- 114
Query: 129 TSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 188
R LP+ G G A N YLR ++DA+ + + A
Sbjct: 115 -----------------RPLPVAS-------GAVG-KANNFRYLRTLEDAECIRRQLIA- 148
Query: 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 248
+ + VV+GGGYIGLE++A N+ V+++ + R+ ++AFYE + G+
Sbjct: 149 -DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVD 207
Query: 249 IIKGTVAVGFTTNADGE-VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIE 307
I GT GF + D + V V +DG L AD+V+ G+G P L + GI
Sbjct: 208 IRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNGIV 267
Query: 308 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 367
++ +TS + AVGD A F +LY R+E V +A + A + I A GK V
Sbjct: 268 INEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQA----RKIAAILCGK-VPR 322
Query: 368 YDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 421
+ P+F+S +++ + G + G + LA F ++++ +V+ V
Sbjct: 323 DEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQP--DFSVFYLQGDRVLAV 374
|
The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation. Pseudomonas putida (taxid: 303) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 461 | ||||||
| 146432261 | 434 | monodehydroascorbate reductase [Vitis vi | 0.941 | 1.0 | 0.809 | 0.0 | |
| 224069008 | 434 | predicted protein [Populus trichocarpa] | 0.941 | 1.0 | 0.806 | 0.0 | |
| 225440936 | 434 | PREDICTED: monodehydroascorbate reductas | 0.941 | 1.0 | 0.806 | 0.0 | |
| 15865451 | 477 | monodehydroascorbate reductase [Mesembry | 0.941 | 0.909 | 0.785 | 0.0 | |
| 198400317 | 434 | monodehydroascorbate reductase [Camellia | 0.941 | 1.0 | 0.780 | 0.0 | |
| 50400860 | 433 | RecName: Full=Monodehydroascorbate reduc | 0.939 | 1.0 | 0.785 | 0.0 | |
| 356533631 | 433 | PREDICTED: monodehydroascorbate reductas | 0.934 | 0.995 | 0.790 | 0.0 | |
| 132449587 | 434 | monodehydroascorbate reductase [Ipomoea | 0.941 | 1.0 | 0.776 | 0.0 | |
| 356577825 | 433 | PREDICTED: monodehydroascorbate reductas | 0.934 | 0.995 | 0.788 | 0.0 | |
| 225380882 | 434 | monodehydroascorbate reductase [Malus x | 0.941 | 1.0 | 0.772 | 0.0 |
| >gi|146432261|gb|ABQ41114.1| monodehydroascorbate reductase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/461 (80%), Positives = 399/461 (86%), Gaps = 27/461 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEK FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG
Sbjct: 1 MAEKHFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWYKEKGIELIL TEIV+AD+ASKTL+SA G FKY IL+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILGTEIVKADLASKTLISAAGETFKYHILII 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGSTV +RLTDF VEGADAKNI YLREIDDADK
Sbjct: 121 ATGSTV---------------------------IRLTDFRVEGADAKNILYLREIDDADK 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
L++ IKAKKNGKAV+VGGGYIGLELSA +KINN+DV MVYPEPWCMPRLFTA IAAFYEG
Sbjct: 154 LIDVIKAKKNGKAVIVGGGYIGLELSAVMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEG 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YYANKGIKIIKGTVAVGFT++A+GEVKEVKLKDGR LEADIVVVGVGGRPL +LFKGQV
Sbjct: 214 YYANKGIKIIKGTVAVGFTSDANGEVKEVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVE 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGI+TD+FFKTS DVYAVGDVATFP+KLY E+RRVEHVDHARKSAEQAVK I A+E
Sbjct: 274 EEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLYNEIRRVEHVDHARKSAEQAVKAIKASE 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GK+V YDYLPYFYSRAFDLSWQFYGDNVG+TVLFGDN+ AS KFGTYWIKDGKVVG
Sbjct: 334 EGKSVEEYDYLPYFYSRAFDLSWQFYGDNVGETVLFGDNNPASPKAKFGTYWIKDGKVVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
FLE GTPEEN AIAKVAR+QP+VE+LD L NEGL+FA KI
Sbjct: 394 AFLEGGTPEENTAIAKVARLQPAVENLDQLTNEGLTFACKI 434
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069008|ref|XP_002326252.1| predicted protein [Populus trichocarpa] gi|118481009|gb|ABK92458.1| unknown [Populus trichocarpa] gi|222833445|gb|EEE71922.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/461 (80%), Positives = 401/461 (86%), Gaps = 27/461 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEKSFKYVI+GGGVSAGYAAREF KQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT
Sbjct: 1 MAEKSFKYVIIGGGVSAGYAAREFCKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIV+AD+A+KTL+SA G IFKY IL+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADLAAKTLVSAAGEIFKYHILII 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGSTV ++LTDFGV+GADAKNI YLREIDDADK
Sbjct: 121 ATGSTV---------------------------IKLTDFGVQGADAKNILYLREIDDADK 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
LVEAIK KKNGKAV+VGGGYIGLELSAAL+INNIDV+MVYPEPWCMPRLFTA IAAFYEG
Sbjct: 154 LVEAIKGKKNGKAVIVGGGYIGLELSAALRINNIDVTMVYPEPWCMPRLFTAGIAAFYEG 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YYANKG+KI+KGTVAVGF +++GEVKEVKLKDGR LEADIVVVGVGGRPL +LFKGQV
Sbjct: 214 YYANKGVKIVKGTVAVGFNADSNGEVKEVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVE 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGI+TD FFKTS DVYAVGDVATFP+KLY ++RRVEHVDHARKSAEQAVK I + E
Sbjct: 274 EEKGGIKTDAFFKTSISDVYAVGDVATFPLKLYNDIRRVEHVDHARKSAEQAVKAIKSNE 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GKT+ YDYLP+FYSR+FDLSWQFYGDNVGD VLFGDND AS KFG+YWIKDGKVVG
Sbjct: 334 EGKTIDVYDYLPFFYSRSFDLSWQFYGDNVGDAVLFGDNDPASPKPKFGSYWIKDGKVVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
VFLE GTP+ENKAIAKVARVQP VE+LDVL EGLSFA KI
Sbjct: 394 VFLEGGTPDENKAIAKVARVQPPVENLDVLTKEGLSFACKI 434
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440936|ref|XP_002283000.1| PREDICTED: monodehydroascorbate reductase [Vitis vinifera] gi|297740090|emb|CBI30272.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/461 (80%), Positives = 399/461 (86%), Gaps = 27/461 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEK FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG
Sbjct: 1 MAEKHFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIV+AD+ASKTL+SA G FKY IL+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADLASKTLISAAGETFKYHILII 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGSTV +RLTDF VEGADAKNI YLREI+DADK
Sbjct: 121 ATGSTV---------------------------IRLTDFRVEGADAKNILYLREINDADK 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
L++ IKAKKNGKAV+VGGGYIGLELSA +KINN+DV MVYPEPWCMPRLFTA IAAFYEG
Sbjct: 154 LIDVIKAKKNGKAVIVGGGYIGLELSAVMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEG 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YYANKGIKIIKGTVAVGFT++A+GEVKEVKLKDGR LEADIVVVGVGGRPL +LFKGQV
Sbjct: 214 YYANKGIKIIKGTVAVGFTSDANGEVKEVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVE 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGI+TD+FFKTS DVYAVGDVATFP+KLY E+RRVEHVDHARKSAEQAVK I A+E
Sbjct: 274 EEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLYNEIRRVEHVDHARKSAEQAVKAIKASE 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GK+V YDYLPYFYSRAFDLSWQFYGDNVG+TVLFGDN+ AS KFGTYWIKDGKVVG
Sbjct: 334 EGKSVEEYDYLPYFYSRAFDLSWQFYGDNVGETVLFGDNNPASPKAKFGTYWIKDGKVVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
FLE GTPEEN AIAKVAR+QP+VE+LD L EGL+FA KI
Sbjct: 394 AFLEGGTPEENTAIAKVARLQPAVENLDQLTKEGLTFACKI 434
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15865451|emb|CAC82727.1| monodehydroascorbate reductase [Mesembryanthemum crystallinum] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/461 (78%), Positives = 398/461 (86%), Gaps = 27/461 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEK FKY+ LGGGVS GYAAREFAKQGV+PGELAIISKEAVAPYERPALSKAYLFPEGT
Sbjct: 44 MAEKHFKYIALGGGVSGGYAAREFAKQGVQPGELAIISKEAVAPYERPALSKAYLFPEGT 103
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERL+P+WYKEKGIELILSTEIV+AD++SK+L SA+G IFKY LVI
Sbjct: 104 ARLPGFHVCVGSGGERLVPDWYKEKGIELILSTEIVKADLSSKSLTSASGEIFKYDNLVI 163
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGSTV ++L+DFGV+GADAKNIFYLREIDDADK
Sbjct: 164 ATGSTV---------------------------IKLSDFGVQGADAKNIFYLREIDDADK 196
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
LVEAIK KKNGK V+VGGGYIGLELSAA+++N++DV+MVYPEPWCMPRLFTADIA FYEG
Sbjct: 197 LVEAIKTKKNGKVVLVGGGYIGLELSAAMRVNDLDVTMVYPEPWCMPRLFTADIAKFYEG 256
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YY NKG+KIIKGTVA GF+++ +GEVKEV+LKDGR L ADIVVVGVGGRPL +LFKGQVA
Sbjct: 257 YYTNKGVKIIKGTVAAGFSSHDNGEVKEVQLKDGRVLAADIVVVGVGGRPLTALFKGQVA 316
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGI+TD FFKTS DVYAVGDVATFP+KLY E+RRVEHVDHARKSAEQAVK I A+E
Sbjct: 317 EEKGGIKTDGFFKTSVPDVYAVGDVATFPLKLYGELRRVEHVDHARKSAEQAVKAIKASE 376
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GK V YDYLPYFYSRAFDLSWQFYGDNVGD VLFGDND AS+ HKFG+YWIKDGKVVG
Sbjct: 377 EGKAVEEYDYLPYFYSRAFDLSWQFYGDNVGDAVLFGDNDPASSPHKFGSYWIKDGKVVG 436
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
FLESGTPEENKAIAKVARVQP +SL+ L EGL+FASKI
Sbjct: 437 AFLESGTPEENKAIAKVARVQPPADSLEQLSKEGLTFASKI 477
|
Source: Mesembryanthemum crystallinum Species: Mesembryanthemum crystallinum Genus: Mesembryanthemum Family: Aizoaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|198400317|gb|ACH87167.1| monodehydroascorbate reductase [Camellia sinensis] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/461 (78%), Positives = 392/461 (85%), Gaps = 27/461 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEK+FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPE
Sbjct: 1 MAEKTFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEGVAPYERPALSKAYLFPESP 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWY +KGI LIL+TEIV+AD+A+KTL+SA G F Y L+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYAQKGIALILNTEIVKADLATKTLVSAAGETFNYHFLII 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGS+V +RLTDFGV+GADAKNI+YLREIDDADK
Sbjct: 121 ATGSSV---------------------------IRLTDFGVQGADAKNIYYLREIDDADK 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
LVEAI+ KKNGK V+VGGGYIGLELSA +K+NN+DV+MVYPEPWCMPRLFTA IAAFYEG
Sbjct: 154 LVEAIQVKKNGKVVIVGGGYIGLELSAVMKLNNLDVNMVYPEPWCMPRLFTAGIAAFYEG 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YYANKGIKIIKGTVAVGFT +A+GEVKEVKLKDGR LEADIVVVGVGGRPL +LFKGQV
Sbjct: 214 YYANKGIKIIKGTVAVGFTADANGEVKEVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVE 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGIETD FFKTSA VYAVGDVATFPMK+Y EMRRVEHVDHARKSAE AVK I A+
Sbjct: 274 EEKGGIETDSFFKTSAPHVYAVGDVATFPMKIYNEMRRVEHVDHARKSAEHAVKAIFAST 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GK++ YDYLP+FYSR+F+LSWQFYGDNVGDTVLFGDN S KFG+YWIKDGKVVG
Sbjct: 334 EGKSIEEYDYLPFFYSRSFNLSWQFYGDNVGDTVLFGDNSPTSENPKFGSYWIKDGKVVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
FLESGTPEENKAIAKVARVQP VESLD+L +GL+FA KI
Sbjct: 394 AFLESGTPEENKAIAKVARVQPPVESLDLLAKDGLTFACKI 434
|
Source: Camellia sinensis Species: Camellia sinensis Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|50400860|sp|Q43497.1|MDAR_SOLLC RecName: Full=Monodehydroascorbate reductase; Short=MDAR; AltName: Full=Ascorbate free radical reductase; Short=AFR reductase gi|832876|gb|AAC41654.1| ascorbate free radical reductase [Solanum lycopersicum] gi|1097368|prf||2113407A ascorbate free radical reductase | Back alignment and taxonomy information |
|---|
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/461 (78%), Positives = 394/461 (85%), Gaps = 28/461 (6%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEKSFKYVI+GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG
Sbjct: 1 MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGER LPEWY EKGI LILSTEIV+AD+ASKTL+SA G FKYQ LVI
Sbjct: 61 ARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVI 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATG+TV L+L+DFGV+GAD+KNIFYLREIDDAD+
Sbjct: 121 ATGTTV---------------------------LKLSDFGVQGADSKNIFYLREIDDADQ 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
LVEA+KAKKNGKAVVVGGGYIGLELSA L++NNI+V+MVYPEPWCMPRLFT IAAFYEG
Sbjct: 154 LVEALKAKKNGKAVVVGGGYIGLELSAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEG 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YY NKG+ IIKGTVAVGF T+ +GEVKEVKLKDGR LEADIVVVGVG RPL +LFKGQV
Sbjct: 214 YYKNKGVNIIKGTVAVGFDTHPNGEVKEVKLKDGRVLEADIVVVGVGARPLTTLFKGQVE 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGI+TD FFKTS DVYAVGDVATFP+K+Y E+RRVEHVDH+RKSAEQAVK I A+E
Sbjct: 274 EEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASE 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GK+V YDYLPYFYSRAFDLSWQFYGDNVG+TVLFGD D SATHKFG YWIKDGK+VG
Sbjct: 334 QGKSVDEYDYLPYFYSRAFDLSWQFYGDNVGETVLFGDADPNSATHKFGQYWIKDGKIVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
FLESG+PEENKAIAKVA+VQP +LD L EG+SFASKI
Sbjct: 394 AFLESGSPEENKAIAKVAKVQPPA-TLDQLAQEGISFASKI 433
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533631|ref|XP_003535365.1| PREDICTED: monodehydroascorbate reductase-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/458 (79%), Positives = 390/458 (85%), Gaps = 27/458 (5%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
K+FKY+ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE ARL
Sbjct: 3 KTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARL 62
Query: 64 PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
PGFHVCVGSGGERLLPEWY EKGIELILSTEIV+ D+A+K+L+SA G F YQIL++ATG
Sbjct: 63 PGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKVDLAAKSLISAGGETFSYQILIVATG 122
Query: 124 STVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVE 183
STV +RLTDFGVEGADAKNIFYLRE+DDADKL
Sbjct: 123 STV---------------------------IRLTDFGVEGADAKNIFYLREVDDADKLYA 155
Query: 184 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243
AIKAKKNGKAVVVGGGYIGLELSA LK+NNIDV+MVYPEPWCMPRLFTA IA FYEGYYA
Sbjct: 156 AIKAKKNGKAVVVGGGYIGLELSAVLKLNNIDVTMVYPEPWCMPRLFTAGIAEFYEGYYA 215
Query: 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 303
NKG+ IIKGTVAVGFT+N+DGEVKEVKLKDGR LEADIVVVGVGGRP L KGQV E K
Sbjct: 216 NKGVNIIKGTVAVGFTSNSDGEVKEVKLKDGRVLEADIVVVGVGGRPQTVLVKGQVEEEK 275
Query: 304 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363
GGI+TD FFKT+ DVYAVGDVATFP+KLY E+RRVEHVDH+RKSAEQAVK I A E GK
Sbjct: 276 GGIKTDAFFKTNLSDVYAVGDVATFPLKLYGELRRVEHVDHSRKSAEQAVKAIKAAEEGK 335
Query: 364 TVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFL 423
TV YDYLPYFYSR+FDLSWQFYGDNVGDTVLFGDN+ AS+ KFGTYWIKDGKVVGVFL
Sbjct: 336 TVEEYDYLPYFYSRSFDLSWQFYGDNVGDTVLFGDNNPASSKPKFGTYWIKDGKVVGVFL 395
Query: 424 ESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
E GTPEEN+AIAKVA+VQP V ++ L EGLSFASKI
Sbjct: 396 EGGTPEENQAIAKVAKVQPPVADVNQLAKEGLSFASKI 433
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|132449587|gb|ABO33631.1| monodehydroascorbate reductase [Ipomoea batatas] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/461 (77%), Positives = 392/461 (85%), Gaps = 27/461 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MA KSFKYVILGG V+AGYAAREF+KQGVKPGELA+ISKEAVAPYERPALSK YLFPEG
Sbjct: 1 MAGKSFKYVILGGDVAAGYAAREFSKQGVKPGELALISKEAVAPYERPALSKGYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWY EKGI LILSTEIV AD+ASKTL+SA G FKY++L+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYTEKGISLILSTEIVEADVASKTLISAAGETFKYEVLII 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGSTV LRL+DFGV+GAD+KNIFYLREID+ADK
Sbjct: 121 ATGSTV---------------------------LRLSDFGVQGADSKNIFYLREIDEADK 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
LVEAIKAKKNGKAVVVGGGYIGLELSA L++NNIDV+MV+PEPWCMPRLFTA IAAFYEG
Sbjct: 154 LVEAIKAKKNGKAVVVGGGYIGLELSAVLRMNNIDVTMVFPEPWCMPRLFTASIAAFYEG 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YY NKG+KIIKGTVAVGF T+ +GEVKEVKLKDGR+LEADIVVVGVG +PL +LFKGQV
Sbjct: 214 YYENKGVKIIKGTVAVGFDTHPNGEVKEVKLKDGRSLEADIVVVGVGAKPLTTLFKGQVE 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGI+TD FFKTS VYAVGDV TFP+KLY E RRVEHV+HARKSAEQAVK I A+E
Sbjct: 274 EEKGGIKTDAFFKTSVPGVYAVGDVVTFPLKLYNEQRRVEHVEHARKSAEQAVKAIFASE 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
G ++ YDYLPYFYSRAFDLSWQFYGDNVG+TVLFGDND S THKFG YWI++GKVVG
Sbjct: 334 KGTSIDEYDYLPYFYSRAFDLSWQFYGDNVGETVLFGDNDPKSPTHKFGQYWIQNGKVVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
FLESGTPEENKAIAKVARVQP SLD + N+GL+FASKI
Sbjct: 394 AFLESGTPEENKAIAKVARVQPPALSLDEMANQGLTFASKI 434
|
Source: Ipomoea batatas Species: Ipomoea batatas Genus: Ipomoea Family: Convolvulaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577825|ref|XP_003557022.1| PREDICTED: monodehydroascorbate reductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/458 (78%), Positives = 390/458 (85%), Gaps = 27/458 (5%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
K+FKY+ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE ARL
Sbjct: 3 KTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARL 62
Query: 64 PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
PGFHVCVGSGGERLLPEWY EKGIELILSTEIV+ D+A+K+L+SA G F YQIL++ATG
Sbjct: 63 PGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKVDLAAKSLISAGGETFSYQILIVATG 122
Query: 124 STVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVE 183
STV +RLTDFGVEGADAKNIFYLRE+DDADKL E
Sbjct: 123 STV---------------------------IRLTDFGVEGADAKNIFYLREVDDADKLYE 155
Query: 184 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243
AIKAKKNGKAVVVGGGYIGLELSA LK+NNIDV+MVYPEPWCMPRLFTA IA FYE YY
Sbjct: 156 AIKAKKNGKAVVVGGGYIGLELSAVLKLNNIDVTMVYPEPWCMPRLFTAGIAEFYEEYYK 215
Query: 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 303
NKG+ IIKGTVAVGFT+N+DGEVKEVKLKDGR LEADIVVVGVGGRP +L KGQV E K
Sbjct: 216 NKGVNIIKGTVAVGFTSNSDGEVKEVKLKDGRVLEADIVVVGVGGRPQTALVKGQVEEEK 275
Query: 304 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363
GGI+TD FFKT+ DVYAVGDVATFP+KLY E+RRVEHVDH+RKSAEQAVK I A E G+
Sbjct: 276 GGIKTDAFFKTNLSDVYAVGDVATFPLKLYGELRRVEHVDHSRKSAEQAVKAIKAAEEGR 335
Query: 364 TVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFL 423
TV YDYLPYFYSR+FDLSWQFYGDNVGDTVLFGDN+ AS+ KFGTYWIKDGKVVGVFL
Sbjct: 336 TVEEYDYLPYFYSRSFDLSWQFYGDNVGDTVLFGDNNPASSKPKFGTYWIKDGKVVGVFL 395
Query: 424 ESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
E GTPEEN+AIAKVA+VQP V +D L EGLSFASKI
Sbjct: 396 EGGTPEENQAIAKVAKVQPPVADVDQLAKEGLSFASKI 433
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225380882|gb|ACN88682.1| monodehydroascorbate reductase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/461 (77%), Positives = 391/461 (84%), Gaps = 27/461 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MA K+FKYVILGGGVSAGYAAREFAKQG+KPGELA+ISKEAVAPYERPALSKAYL PE
Sbjct: 1 MAAKNFKYVILGGGVSAGYAAREFAKQGLKPGELAVISKEAVAPYERPALSKAYLLPESP 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLP+WYKEKGIELILSTEIV+AD+ KTL+S TG FKY+ LVI
Sbjct: 61 ARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVKADLPGKTLVSGTGESFKYETLVI 120
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGSTV +RL+DFGV+GADAKNIFYLREIDDADK
Sbjct: 121 ATGSTV---------------------------IRLSDFGVKGADAKNIFYLREIDDADK 153
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
L EAIKAKKNGKAV+VGGGYIGLEL AAL+INN+DV MVYPEPWCMPRLFT+DIAAFYEG
Sbjct: 154 LNEAIKAKKNGKAVIVGGGYIGLELGAALRINNLDVKMVYPEPWCMPRLFTSDIAAFYEG 213
Query: 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 300
YY NKG++IIKGTVA GFT +++GEVKEV LKDG LEADIVVVGVGGRPL +LFKGQV
Sbjct: 214 YYKNKGVQIIKGTVATGFTADSNGEVKEVHLKDGTVLEADIVVVGVGGRPLTTLFKGQVE 273
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360
E KGGI+TD FFKTS +VYAVGDVATFP+KLY E+RRVEHVDHARKSAEQ+VK I A+E
Sbjct: 274 EEKGGIKTDAFFKTSVPNVYAVGDVATFPLKLYNEIRRVEHVDHARKSAEQSVKAIKASE 333
Query: 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVG 420
GKTV YDYLP+FYSR+FDLSWQFYGDNVG+TVLFGD++ A+ KFG+YWIKDGKVVG
Sbjct: 334 EGKTVEEYDYLPFFYSRSFDLSWQFYGDNVGETVLFGDSNPATPKAKFGSYWIKDGKVVG 393
Query: 421 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461
FLE GTPEENKAIAKVA+ QP V SLD L EGLSFASKI
Sbjct: 394 AFLEGGTPEENKAIAKVAKAQPPVASLDQLATEGLSFASKI 434
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 461 | ||||||
| TAIR|locus:2085176 | 466 | MDAR1 "monodehydroascorbate re | 0.670 | 0.663 | 0.711 | 6.4e-173 | |
| TAIR|locus:2144588 | 435 | ATMDAR2 [Arabidopsis thaliana | 0.670 | 0.710 | 0.747 | 3e-170 | |
| TAIR|locus:2100143 | 441 | MDHAR "monodehydroascorbate re | 0.665 | 0.696 | 0.685 | 5.7e-152 | |
| TAIR|locus:2086430 | 488 | MDAR4 "monodehydroascorbate re | 0.659 | 0.622 | 0.498 | 4.2e-115 | |
| TAIR|locus:2195503 | 493 | MDAR6 "monodehydroascorbate re | 0.622 | 0.582 | 0.418 | 2.3e-95 | |
| UNIPROTKB|P95034 | 406 | Rv0688 "PUTATIVE FERREDOXIN RE | 0.585 | 0.665 | 0.300 | 1.4e-30 | |
| WB|WBGene00017640 | 549 | F20D6.11 [Caenorhabditis elega | 0.600 | 0.504 | 0.288 | 3.5e-28 | |
| UNIPROTKB|Q19655 | 549 | F20D6.11 "Protein F20D6.11" [C | 0.600 | 0.504 | 0.288 | 3.5e-28 | |
| UNIPROTKB|P95146 | 411 | Rv1869c "Probable reductase" [ | 0.524 | 0.588 | 0.288 | 1.9e-27 | |
| TIGR_CMR|SPO_3737 | 403 | SPO_3737 "pyridine nucleotide- | 0.470 | 0.538 | 0.312 | 1.5e-25 |
| TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 6.4e-173, Sum P(3) = 6.4e-173
Identities = 220/309 (71%), Positives = 257/309 (83%)
Query: 153 VLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKIN 212
VLRLTDFGV+GAD+KNI YLREIDDADKLVE YIGLELSA L+IN
Sbjct: 158 VLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRIN 217
Query: 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 272
N+DV+MV+PEPWCMPRLFTADIAAFYE YY NKG+KIIKGTVA GFT +GEVKEV+LK
Sbjct: 218 NLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLK 277
Query: 273 DGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 332
DGRTLEADIV+VGVG +PL SLFKGQV E+KGGI+TD FFKTS DVYAVGDVATFP+K+
Sbjct: 278 DGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKM 337
Query: 333 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD 392
Y ++RRVEHVDH+RKSAEQAVK I A EGG V YDYLP+FYSR+FDLSWQFYGDNVGD
Sbjct: 338 YGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGD 397
Query: 393 TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKN 452
+VLFGD++ ++ +FG YW++ GKVVG F+E G+ +ENKA+AKVA+ +PS ESLD L
Sbjct: 398 SVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVK 457
Query: 453 EGLSFASKI 461
+G+SFA+KI
Sbjct: 458 QGISFAAKI 466
|
|
| TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1207 (429.9 bits), Expect = 3.0e-170, Sum P(2) = 3.0e-170
Identities = 231/309 (74%), Positives = 256/309 (82%)
Query: 153 VLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKIN 212
V+RL+DFGV GADAKNIFYLRE++DAD L YIGLEL AALK N
Sbjct: 127 VIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKAN 186
Query: 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 272
N+DV+MVYPEPWCMPRLFTA IA+FYEGYYANKGI I+KGTVA GFTTN++GEV EVKLK
Sbjct: 187 NLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLK 246
Query: 273 DGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 332
DGRTLEADIV+VGVGGRP+ISLFK QV E KGG++TD FFKTS DVYA+GDVATFPMKL
Sbjct: 247 DGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKL 306
Query: 333 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD 392
Y EMRRVEHVDHARKSAEQAVK I A E G ++ YDYLPYFYSRAFDLSWQFYGDNVG+
Sbjct: 307 YNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDNVGE 366
Query: 393 TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKN 452
+VLFGDND S KFG+YWIK+ KVVG FLE G+PEEN AIAK+AR QPSVESL+VL
Sbjct: 367 SVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSK 426
Query: 453 EGLSFASKI 461
EGLSFA+ I
Sbjct: 427 EGLSFATNI 435
|
|
| TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1089 (388.4 bits), Expect = 5.7e-152, Sum P(2) = 5.7e-152
Identities = 211/308 (68%), Positives = 247/308 (80%)
Query: 154 LRLTDFGVEGADAKNIFYLREIDDADKL-VEXXXXXXXXXXXXXXXXYIGLELSAALKIN 212
+RL++ GV+ AD KNIFYLREI+D+D+L + ++GLE+S+AL+ N
Sbjct: 128 IRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRAN 187
Query: 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 272
N +V+MV+PEPW + R FTA+IA+FYE YYANKGIKIIKGTVA GF+TN+DGEV EVKL+
Sbjct: 188 NHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLE 247
Query: 273 DGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 332
DGRTLEA+IVV GVG RP SLFKGQ+ E KGGI+TD FFKTS DVYA+GDVATFPMK+
Sbjct: 248 DGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKM 307
Query: 333 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD 392
Y RRVEH D+ARKSA QAVK I A E GKT+ YDYLPYFYSR F LSW+FYG+NVG+
Sbjct: 308 YGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGENVGE 367
Query: 393 TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKN 452
+VLFGDND S KFGTYW+KDGKVVGVFLE GT EE+KAIAKVAR QPSVESLDVL
Sbjct: 368 SVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLDVLSE 427
Query: 453 EGLSFASK 460
EGLSFA+K
Sbjct: 428 EGLSFATK 435
|
|
| TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 756 (271.2 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 155/311 (49%), Positives = 206/311 (66%)
Query: 152 QVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKI 211
+ L+L +FGVEG+DA+N+ YLR++ DA++L YIG+E +A+L I
Sbjct: 124 RALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVI 183
Query: 212 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 271
N I+V+MV+PE CM RLFT IA+ YE YY KG+K IKGTV F +++ +V V L
Sbjct: 184 NKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNL 243
Query: 272 KDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 331
KDG L AD+VVVG+G RP SLF+GQ+ KGGI+ + ++S VYA+GDVATFP+K
Sbjct: 244 KDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVK 303
Query: 332 LYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG 391
L+ EMRR+EHVD ARKSA AV IM + KT +DYLP+FYSR F SWQFYGD G
Sbjct: 304 LFGEMRRLEHVDSARKSARHAVSAIM--DPIKT-GDFDYLPFFYSRVFAFSWQFYGDPTG 360
Query: 392 DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVE-SLDVL 450
D V FG+ + + FG YW+K G +VG FLE GT EE + I+K +++P+V L+ L
Sbjct: 361 DVVHFGEYEDGKS---FGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEEL 417
Query: 451 KNEGLSFASKI 461
+ EGL FA +
Sbjct: 418 EREGLGFAHTV 428
|
|
| TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
Identities = 129/308 (41%), Positives = 180/308 (58%)
Query: 163 GADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPE 222
G + Y+RE+ DAD L+ YIG+E++AA N+D ++V+PE
Sbjct: 191 GGHLPGVHYIREVADADSLI--ASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIVFPE 248
Query: 223 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 282
+ RLFT +A YE Y G+K +KG +DG V VKL DG T+EAD V
Sbjct: 249 DQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTV 308
Query: 283 VVGVGGRPLISLFKGQVAENK--GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVE 340
V+G+G +P I F+ +A NK GGI+ D F+TS ++A+GDVA FP+K+Y M RVE
Sbjct: 309 VIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVE 367
Query: 341 HVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS-------WQFYGDNVGDT 393
HVDHAR+SA+ VK+++ T T YDYLPYFYSR F+ WQF+GDNVG+T
Sbjct: 368 HVDHARRSAQHCVKSLLTAH---TDT-YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 423
Query: 394 VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNE 453
V G+ D K T+WI+ G++ GV +ESG+PEE + + K+AR QP V+ +
Sbjct: 424 VEVGNFD-----PKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASAS 478
Query: 454 GLSFASKI 461
+ A +I
Sbjct: 479 SVEEALEI 486
|
|
| UNIPROTKB|P95034 Rv0688 "PUTATIVE FERREDOXIN REDUCTASE" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 86/286 (30%), Positives = 132/286 (46%)
Query: 165 DAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPW 224
D I LR D++ L + +IG E++A+L+ +DV +V P+P
Sbjct: 131 DLDGIRVLRSFDESMALRKHASAARHAVVVGAG--FIGCEVAASLRGLGVDVVLVEPQPA 188
Query: 225 CMPRLFTADIAAFYEGYYANKGIKIIKG-TVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283
+ + I + ++G+ + G TVA G V V L DG L AD+VV
Sbjct: 189 PLASVLGEQIGQLVTRLHRDEGVDVRTGVTVA---EVRGKGHVDAVVLTDGTELPADLVV 245
Query: 284 VGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVD 343
VG+G P +G E G+ D +TSA +V+A+GDVA++ + + R VEH
Sbjct: 246 VGIGSTPATEWLEGSGVEVDNGVICDKAGRTSAPNVWALGDVASWRDPMGHQAR-VEHWS 304
Query: 344 HARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD-NVGDTVLFGDNDLA 402
+ A+QA + A G TG +PYF+S +D+ Q G+ + D V ++D
Sbjct: 305 NV---ADQARVVVPAMLGTDVPTGV-VVPYFWSDQYDVKIQCLGEPHATDVVHLVEDD-- 358
Query: 403 SATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 448
KF Y+ +DG +VGV + K K+A P E LD
Sbjct: 359 --GRKFLAYYERDGVLVGVVGGGMAGKVMKVRGKIAAGAPIAEVLD 402
|
|
| WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 276 (102.2 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
Identities = 86/298 (28%), Positives = 148/298 (49%)
Query: 161 VEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVY 220
V G+D KNI YLR++++A+ + +IG+E+++AL V+++
Sbjct: 256 VPGSDLKNICYLRKVEEANII---SNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVIS 312
Query: 221 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 280
P +P +F +DI + KG+K V N GEV +V L++G+ L+ D
Sbjct: 313 NTPEPLP-VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVD 371
Query: 281 IVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMR 337
++V G+G P +G +N+G IE D+ F+T+ ++A+GDV T P+ L+ +
Sbjct: 372 LLVCGIGVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSI 431
Query: 338 RVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLF 396
++H A+ + TI+ GK G +PYF++ F +F G N G T +
Sbjct: 432 NIQHFQTAQAHGQHLGYTIV----GKPQPG-PIVPYFWTLFFFAFGLKFSGCNQGSTKEY 486
Query: 397 GDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV-QPSVE-SLDVLKN 452
+ D + T F Y++K KVV V +G P + ++ A + + +E +L LKN
Sbjct: 487 TNGDPETGT--FIRYFLKKDKVVAV--AAGGP--SSVASQFAEIFKKGIEVTLKDLKN 538
|
|
| UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 276 (102.2 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
Identities = 86/298 (28%), Positives = 148/298 (49%)
Query: 161 VEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVY 220
V G+D KNI YLR++++A+ + +IG+E+++AL V+++
Sbjct: 256 VPGSDLKNICYLRKVEEANII---SNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVIS 312
Query: 221 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 280
P +P +F +DI + KG+K V N GEV +V L++G+ L+ D
Sbjct: 313 NTPEPLP-VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVD 371
Query: 281 IVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMR 337
++V G+G P +G +N+G IE D+ F+T+ ++A+GDV T P+ L+ +
Sbjct: 372 LLVCGIGVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSI 431
Query: 338 RVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLF 396
++H A+ + TI+ GK G +PYF++ F +F G N G T +
Sbjct: 432 NIQHFQTAQAHGQHLGYTIV----GKPQPG-PIVPYFWTLFFFAFGLKFSGCNQGSTKEY 486
Query: 397 GDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV-QPSVE-SLDVLKN 452
+ D + T F Y++K KVV V +G P + ++ A + + +E +L LKN
Sbjct: 487 TNGDPETGT--FIRYFLKKDKVVAV--AAGGP--SSVASQFAEIFKKGIEVTLKDLKN 538
|
|
| UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 75/260 (28%), Positives = 122/260 (46%)
Query: 161 VEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVY 220
+ G+DA + YLR +DA L +IGLE++A+ + +DV++V
Sbjct: 119 IPGSDAAGVHYLRSYNDAVAL--NSVLVQGSSLAVVGAGWIGLEVAASARQRGVDVTVV- 175
Query: 221 PEPWCMPRLFTAD--IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 278
E P L + + + ++G+ + T T ADG+ +K++DG T+
Sbjct: 176 -ETAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGLKMRDGSTVA 233
Query: 279 ADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR 337
AD V+V VG +P + L + +A +GG+ D +TS D+YAVGD+A L
Sbjct: 234 ADAVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLGTRV 293
Query: 338 RVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-DTVLF 396
R EH +A K A ++ G Y LPY ++ +DL ++ G D V+F
Sbjct: 294 RTEHWANALKQPAVAAAGMLGRPGE-----YAELPYLFTDQYDLGMEYVGHAPSCDRVVF 348
Query: 397 GDNDLASATHKFGTYWIKDG 416
N A +F ++W+ DG
Sbjct: 349 RGN---VAGREFLSFWL-DG 364
|
|
| TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 75/240 (31%), Positives = 111/240 (46%)
Query: 163 GADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPE 222
G D + +R++ D D + YIGLE +A + V++V
Sbjct: 118 GGDLAGVHVVRDLADIDAMAPSVTEGARALIVGGG--YIGLEAAAVCAKRGVQVTLVEMA 175
Query: 223 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT--NADGEVKEVKLKDGRTLEAD 280
+ R+ + +A++ + G+ I +G VG T A G V L DG L D
Sbjct: 176 DRILQRVAAPETSAYFRALHTGHGVDIREG---VGLTRLIGAQGRVTGAVLTDGSELPVD 232
Query: 281 IVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 338
+VVVGVG P +L + G V EN GI TD +TS ++A GD A+FP K R R
Sbjct: 233 LVVVGVGIAPATALAEAAGLVLEN--GIRTDAQGRTSDPSIWAAGDCASFPYKGGRI--R 288
Query: 339 VEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL--PYFYSRAFDLSWQFYGDNVG-DTVL 395
+E V +A AE + + +G G DY+ P+F+S +D+ Q G N G D V+
Sbjct: 289 LESVPNAIDQAETVAQNM---QGA----GKDYVAQPWFWSDQYDVKLQIAGLNTGYDRVV 341
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LFA3 | MDAR3_ARATH | 1, ., 6, ., 5, ., 4 | 0.7353 | 0.9414 | 1.0 | yes | no |
| Q42711 | MDARS_CUCSA | 1, ., 6, ., 5, ., 4 | 0.7744 | 0.9414 | 1.0 | N/A | no |
| Q93WJ8 | MDAR4_ARATH | 1, ., 6, ., 5, ., 4 | 0.7211 | 0.9370 | 0.9931 | no | no |
| Q40977 | MDAR_PEA | 1, ., 6, ., 5, ., 4 | 0.7636 | 0.9327 | 0.9930 | N/A | no |
| Q43497 | MDAR_SOLLC | 1, ., 6, ., 5, ., 4 | 0.7852 | 0.9392 | 1.0 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 461 | |||
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 6e-54 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 5e-40 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 1e-34 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 4e-34 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 2e-29 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 9e-24 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 1e-23 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 5e-19 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 7e-19 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-17 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 9e-16 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 2e-15 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 5e-15 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 2e-14 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 1e-13 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 1e-12 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 4e-12 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 5e-12 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 3e-11 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 4e-11 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 4e-11 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 2e-10 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 2e-10 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 1e-09 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 2e-09 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 8e-09 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 2e-08 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 3e-08 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 6e-08 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 1e-07 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 2e-06 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 3e-06 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 3e-06 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 6e-06 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 1e-05 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 3e-05 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 3e-05 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 6e-05 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 1e-04 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 1e-04 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 2e-04 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 3e-04 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 3e-04 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 4e-04 | |
| TIGR03143 | 555 | TIGR03143, AhpF_homolog, putative alkyl hydroperox | 8e-04 | |
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 9e-04 | |
| PTZ00153 | 659 | PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi | 0.002 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 0.003 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 0.003 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 6e-54
Identities = 102/329 (31%), Positives = 145/329 (44%), Gaps = 51/329 (15%)
Query: 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGF 66
VI+GGG AG AA + ++A+I +E Y R L K L
Sbjct: 1 DVVIIGGG-PAGLAAAIRLAR--LGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELA- 56
Query: 67 HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSA---TGLIFKYQILVIATG 123
G L E YKE G+E++L TE+V D KT++ TG Y L+IATG
Sbjct: 57 ------IGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110
Query: 124 STVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVE 183
+ I G+ G + LR + D+D+++E
Sbjct: 111 ARPRI------------------------------PGIPGV---EVATLRGVIDSDEILE 137
Query: 184 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243
++ K + VVVGGGYIGLEL+AAL +V++V + R AA E
Sbjct: 138 LLELPK--RVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAALLE-KLE 194
Query: 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAE 301
+ + V V DG+V EVKL DG L+AD+V+V +G RP L + G +
Sbjct: 195 KLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTELLEQAGVELD 254
Query: 302 NKGGIETDDFFKTSADDVYAVGDVATFPM 330
+G I D++ +TS +YA GDVA
Sbjct: 255 ERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 5e-40
Identities = 110/424 (25%), Positives = 172/424 (40%), Gaps = 84/424 (19%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
K K VI+G G++ E + ++ + +E Y R LS L E TA
Sbjct: 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGEKTA-- 58
Query: 64 PGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
E + +WY+E GI L ++++ D A+K + + G Y L+I
Sbjct: 59 -----------EDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLII 107
Query: 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADK 180
ATGS I LP + G+D +F R IDD +
Sbjct: 108 ATGSYPFI-------------------LP-----------IPGSDLPGVFVYRTIDDVEA 137
Query: 181 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240
+++ + KK KAVV+GGG +GLE + LK ++V++V+ P M R
Sbjct: 138 MLDCARNKK--KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRR 195
Query: 241 YYANKGIKII--KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ 298
+ GIK++ K T + + +V+ V+ DG + AD+VV+ VG RP L K
Sbjct: 196 KLEDLGIKVLLEKNTEEIV----GEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEA 251
Query: 299 VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY------REMRRV--EHVDHARKSAE 350
GI +D+ +TS D+YAVG+ A K+Y E +V +H+ A
Sbjct: 252 GLAVNRGIVVNDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAY 311
Query: 351 QAVKT----------------IMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV 394
+ T TEG +++ D Y + D + V
Sbjct: 312 EGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLV-----LKDDKIVGAV 366
Query: 395 LFGD 398
L+GD
Sbjct: 367 LYGD 370
|
Length = 793 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 99/419 (23%), Positives = 154/419 (36%), Gaps = 57/419 (13%)
Query: 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
VI+GGG AG +A ++ + E+ +I +E Y R LS +
Sbjct: 1 IVIVGGGA-AGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDL--- 56
Query: 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVS 127
R P + + GI++ TE+ D +K +L G I Y LV+ATG+
Sbjct: 57 --------RYPPRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEIE-YDYLVLATGAR-- 105
Query: 128 ITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 187
R P +D + + LR +DA+ L +
Sbjct: 106 -----------------PRPPP-------------ISDWEGVVTLRLREDAEALKGGAEP 135
Query: 188 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247
K VVVG G IGLE + A V+++ +L ++A G+
Sbjct: 136 PK--DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGV 193
Query: 248 KIIKGTVAVGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAENK 303
+++ GT VG + V+ V DG ++AD+V++G G RP + L +A
Sbjct: 194 ELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAG 253
Query: 304 GGIETDDFFKTSAD-DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362
G + D+ TS D DVYA GDVA P + R+ A + I A
Sbjct: 254 GAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAG-----RIAAENIA 308
Query: 363 KTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 421
+ L S DL G G + S + ++VG+
Sbjct: 309 GALRIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVGI 367
|
Length = 415 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 105/402 (26%), Positives = 166/402 (41%), Gaps = 75/402 (18%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
M EK+ +I+GGG +A AA +QG GEL + S E PYERP LSK+ L +
Sbjct: 1 MKEKTI--IIVGGGQAAAMAAASLRQQGFT-GELHLFSDERHLPYERPPLSKSMLLEDSP 57
Query: 61 ARLPGFHVCVGSGGERLLPE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILV 119
+++LP W++E + L I ++ L+ G + + L
Sbjct: 58 QL------------QQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLF 105
Query: 120 IATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDAD 179
IATG+ R LPL L + F LR DA
Sbjct: 106 IATGAAA-------------------RPLPLLDAL-----------GERCFTLRHAGDAA 135
Query: 180 KLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239
+L E ++ ++ V+VG G IGLEL+A+ V+++ M R + +
Sbjct: 136 RLREVLQPER--SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLL 193
Query: 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQV 299
+ G++I+ DGE E+ L+ G TL+AD+V+ G+G Q+
Sbjct: 194 QRHQQAGVRILLNNAIE---HVVDGEKVELTLQSGETLQADVVIYGIGIS-----ANDQL 245
Query: 300 A-----ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE----MRRVEHVDHARKSAE 350
A + GI D+ +T ++A GDVA + R + R E ++A A+
Sbjct: 246 AREANLDTANGIVIDEACRTCDPAIFAGGDVA-----ITRLDNGALHRCESWENANNQAQ 300
Query: 351 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD 392
A ++ P+F+S + + QF GD GD
Sbjct: 301 IAAAAMLGLPLPLLPP-----PWFWSDQYSDNLQFIGDMRGD 337
|
Length = 396 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-29
Identities = 99/418 (23%), Positives = 158/418 (37%), Gaps = 82/418 (19%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR---LPG 65
V++G G++ E K E+ I +E Y R LS L E L
Sbjct: 2 VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGEADLDDITLNS 60
Query: 66 FHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST 125
+WY++ GI L +++ D K +++ G Y L++ATGS
Sbjct: 61 K-------------DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSY 107
Query: 126 VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI 185
I LP + GAD K ++ R I+D D ++
Sbjct: 108 PFI-------------------LP-----------IPGADKKGVYVFRTIEDLDAIMAM- 136
Query: 186 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 245
A++ KA V+GGG +GLE + L+ +DVS+++ P M + + K
Sbjct: 137 -AQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQK 195
Query: 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG 305
G+ + V + ++ KDG +LEAD++V+ G RP L + G
Sbjct: 196 GLTFLLEKDTV--EIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVNRG 253
Query: 306 IETDDFFKTSADDVYAVGDVATFPMKLY------REMRRVEHVDH----ARKSAEQAVKT 355
I +D +TS D+YAVG+ A ++Y E +V DH + E + +
Sbjct: 254 IIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVL-ADHICGVECEEYEGSDLS 312
Query: 356 ---------------IMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGD 398
TE ++ YD Y + D + VLFGD
Sbjct: 313 AKLKLLGVDVWSAGDAQETERTTSIKIYDEQKGIYKKLV-----LSDDKLLGAVLFGD 365
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 9e-24
Identities = 81/332 (24%), Positives = 139/332 (41%), Gaps = 62/332 (18%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
+I+ GG +AG +A AK+ K E+ + K + + G LP F
Sbjct: 3 IIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF-------------GACGLPYF-- 47
Query: 69 CVGS---GGERLL---PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIF--KYQI 117
VG ++ PE + + GI++ E+V+ D +KT+ TG IF Y
Sbjct: 48 -VGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDK 106
Query: 118 LVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDD 177
L+IATG+ I + +I + +N++ L+ ++D
Sbjct: 107 LMIATGARPIIPPIKNI------------------------------NLENVYTLKSMED 136
Query: 178 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 237
L E +K ++ V++G G+IGLE A K +V ++ E +P F +I
Sbjct: 137 GLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDV 196
Query: 238 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 297
E G+++ + +V+ V D EAD+V+V G +P +
Sbjct: 197 MEEELRENGVELHLNEFVKSLI--GEDKVEGVV-TDKGEYEADVVIVATGVKPNTEFLED 253
Query: 298 QVAE--NKGGIETDDFFKTSADDVYAVGDVAT 327
+ G I D++ +TS +++YA GD AT
Sbjct: 254 TGLKTLKNGAIIVDEYGETSIENIYAAGDCAT 285
|
Length = 444 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 54/257 (21%), Positives = 115/257 (44%), Gaps = 45/257 (17%)
Query: 80 EWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVSITSLTSI 134
+ K++GI++ + E++ + +T++ + T ++ Y L+++ G++ + +
Sbjct: 52 VFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN---- 107
Query: 135 RSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 194
+EG + +F LR ++D D + + I K V
Sbjct: 108 --------------------------IEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVV 141
Query: 195 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII--KG 252
++GGGYIG+E++ AL+ +V++++ + +LF ++ E I + +
Sbjct: 142 IIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEE 201
Query: 253 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAEN-KGGIETDD 310
++ +GE + G +AD+V++ G +P L K + G I ++
Sbjct: 202 VDSI------EGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNE 255
Query: 311 FFKTSADDVYAVGDVAT 327
F+TS ++YA GDVA
Sbjct: 256 KFQTSVPNIYAAGDVAE 272
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 5e-19
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
V+VGGG IGLE ++ L ++V++V +P A+++ G++++ G
Sbjct: 184 VIVGGGVIGLEWASMLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGA 242
Query: 254 VAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPL---ISLFKGQVAENKGGIET 308
+G T DG V V +G TLEAD V+V VG RP I L + G I+
Sbjct: 243 KVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQI 302
Query: 309 DDFFKTSADDVYAVGDVATFPMKLYREMRR----VEHV 342
DDF +T +YA+GDV P + M EH+
Sbjct: 303 DDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHI 340
|
Length = 472 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 7e-19
Identities = 84/396 (21%), Positives = 144/396 (36%), Gaps = 89/396 (22%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERPALSKAYLFPEGTARLPGF 66
VILGGG AA+ A++ E+ ++ + + ++ E +P
Sbjct: 7 VILGGGFGGLSAAKRLARKLPDV-EITLVDRRDYHLFTPLLYEVA-TGTLSESEIAIP-- 62
Query: 67 HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126
L ++ G + E+ D +K + A Y LV+A GS
Sbjct: 63 -----------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSET 111
Query: 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKL----- 181
+ FG+ GA A+ F L+ ++DA +L
Sbjct: 112 N------------------------------YFGIPGA-AEYAFGLKTLEDALRLRRHLL 140
Query: 182 --VEAIKAKKNGKA----VVVGGGYIGLELSAAL-----------KINNIDVSMVYPEPW 224
E +++ +A V+VGGG G+EL+ L +++ ++ ++ E
Sbjct: 141 EAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEA- 199
Query: 225 CMPRL---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEAD 280
PR+ F ++ + E G++++ GT V T + V LKDG + AD
Sbjct: 200 -GPRILPMFPPKLSKYAERALEKLGVEVLLGT-PV---TEVTPDG--VTLKDGEEEIPAD 252
Query: 281 IVV--VGVGGRPLISLFKGQVAENKGGIETDDFFK-TSADDVYAVGDVATFPMKLYREMR 337
VV GV PL+ G + +G + + + D++A GD A
Sbjct: 253 TVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPT 312
Query: 338 RVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY 373
A + E A K I A GK + + Y
Sbjct: 313 ----AQAAHQQGEYAAKNIKARLKGKPLKPFKYKDK 344
|
Length = 405 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-17
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 23/187 (12%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
V+VGGGYIGLE ++ V++V +P +I+ G+KI+ T
Sbjct: 177 VIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKGGVKILLNT 235
Query: 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGI 306
DG + ++ +G T+EAD V+V +G +P G EN +G I
Sbjct: 236 KVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT---DGLGLENAGVELDDRGFI 292
Query: 307 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 366
+ DD T+ +YA+GDV PM + HV A A + I G +T
Sbjct: 293 KVDDQMTTNVPGIYAIGDVIGGPM--------LAHV--AMAEGRIAAENIAG--GKRTPI 340
Query: 367 GYDYLPY 373
Y +P
Sbjct: 341 DYRLIPS 347
|
Length = 454 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 9e-16
Identities = 54/148 (36%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---FTADIAAFYEGYYANKGIK 248
VV+GGGYIG+E ++A +V++V E +PR+ +I+ E +GIK
Sbjct: 174 SLVVIGGGYIGVEFASAYASLGAEVTIV--E--ALPRILPGEDKEISKLAERALKKRGIK 229
Query: 249 IIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLIS---LFKGQVAEN 302
I G A DG V V L+DG TLEAD V+V VG RP L + V +
Sbjct: 230 IKTGAKAKKVEQTDDG-V-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD 287
Query: 303 KGGIETDDFFKTSADDVYAVGDVATFPM 330
+G IE D+ +T+ ++YA+GD+ PM
Sbjct: 288 RGFIEVDEQLRTNVPNIYAIGDIVGGPM 315
|
Length = 462 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
V++GGG IG+E ++ V+++ +P A+++ + KG+KI+ T
Sbjct: 174 VIIGGGVIGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNT 232
Query: 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETD 309
N D E K + TL + V+V VG +P G + +G I D
Sbjct: 233 KVTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVD 292
Query: 310 DFFKTSADDVYAVGDVATFPM 330
++ +T+ +YA+GDV PM
Sbjct: 293 EYMRTNVPGIYAIGDVIGGPM 313
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-15
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
+ VVVGGGYIGLE ++AL V++V + F +IA + GI+++
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLR-GFDEEIAKILQEKLEKNGIEVLL 59
Query: 252 GTVAVGFTTNADGEVKEVKLKDG 274
T N DG V ++K DG
Sbjct: 60 NTTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 58/257 (22%), Positives = 108/257 (42%), Gaps = 34/257 (13%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKH 138
+Y++ GI++++ + + K + S+ G Y L++ATGS I
Sbjct: 66 EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP-------- 117
Query: 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGG 198
++G++ ++ F R I+D +EA A+++ + VVGG
Sbjct: 118 ----------------------IKGSETQDCFVYRTIEDL-NAIEAC-ARRSKRGAVVGG 153
Query: 199 GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 258
G +GLE + ALK ++ ++ P M + G+++ +
Sbjct: 154 GLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEI 213
Query: 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSA 316
K ++ DG LE D +V G RP L G +GGI +D +TS
Sbjct: 214 VQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSD 273
Query: 317 DDVYAVGDVATFPMKLY 333
D+YA+G+ A++ +++
Sbjct: 274 PDIYAIGECASWNNRVF 290
|
Length = 847 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVY--PEPWCMPRLFTADIAAFYEGYYANKGIKI 249
+ VVG GYI +E + L + + P R F DI KGI++
Sbjct: 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL---RGFDPDIRETLVEEMEKKGIRL 225
Query: 250 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGG- 305
V NADG + + L+DG TL D ++ +G P + L V N+ G
Sbjct: 226 HTNAVPKAVEKNADGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGY 284
Query: 306 IETDDFFKTSADDVYAVGDV 325
I D++ T+ +YAVGDV
Sbjct: 285 IIVDEYQNTNVPGIYAVGDV 304
|
Length = 450 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 34/191 (17%)
Query: 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222
G ++ F LR ++D D + + IKA + KA+VVG GYI LE+ L + ++++
Sbjct: 121 GFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRS 180
Query: 223 PWCMPRLFTADI--AAFYE------GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 274
+ +L AD+ E Y N+ I I G EV K G
Sbjct: 181 DK-INKLMDADMNQPILDELDKREIPYRLNEEIDAING--------------NEVTFKSG 225
Query: 275 RTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKL 332
+ D+++ GVG P + + +KG I +D F+T+ ++YA+GD+ T
Sbjct: 226 KVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIIT---SH 282
Query: 333 YREMRRVEHVD 343
YR HVD
Sbjct: 283 YR------HVD 287
|
Length = 438 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 195 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV 254
VVGGG IG EL+ L V++V + L ++++ + G+ ++ +
Sbjct: 146 VVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQ 205
Query: 255 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT 314
G G L GR++E D V+ G RP +L + GI D + +T
Sbjct: 206 LQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRGIVVDSYLQT 263
Query: 315 SADDVYAVGDVA 326
SA D+YA+GD A
Sbjct: 264 SAPDIYALGDCA 275
|
Length = 377 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 5e-12
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 15/176 (8%)
Query: 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 219
GV + + + DKL +++ V+GGG IGLEL AL + V++
Sbjct: 147 GVWLILGDRLLTSDDAFELDKLPKSL--------AVIGGGVIGLELGQALSRLGVKVTVF 198
Query: 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLE 278
+P L +++ + + K KI G + D +V+E++ T+E
Sbjct: 199 ERGDRILP-LEDPEVSKQAQKILS-KEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIE 256
Query: 279 ADIVVVGVGGRPLI---SLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPM 330
AD V+V G RP L + + +G D+ +TS +YA GDV P
Sbjct: 257 ADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPP 312
|
Length = 460 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 13/156 (8%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA-FYEGYYANKGIKIIKG 252
V+VGGG+I E + + V++V + R DI+ F E A+K + G
Sbjct: 170 VIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDISERFTE--LASKRWDVRLG 226
Query: 253 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAENKGG-IET 308
VG + + G ++L DG T+EAD+++V G P L+ V ++ G +
Sbjct: 227 RNVVGVSQDGSG--VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVV 284
Query: 309 DDFFKTSADDVYAVGDVAT-FPMK--LYREMRRVEH 341
D++ +TSA+ V+A+GDV++ + +K E R V+H
Sbjct: 285 DEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQH 320
|
Length = 451 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
V+VGGGYI E + V++V + R DI+ + A K I G
Sbjct: 173 VIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDEDISDRFTEI-AKKKWDIRLGR 230
Query: 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAENKGG-IETD 309
+ DG + L DG T+ AD+++V G P L+ V ++ G I+ D
Sbjct: 231 NVTAVEQDGDGVT--LTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD 288
Query: 310 DFFKTSADDVYAVGDVATFPMKLYR----EMRRVEH 341
++ +TSA V+A+GDV++ P +L E R V+H
Sbjct: 289 EYGRTSARGVWALGDVSS-PYQLKHVANAEARVVKH 323
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
V+GGG IG+EL+ A +V+++ +PR +I+A E A +GI+++
Sbjct: 170 AVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSA 228
Query: 254 VAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLFKGQVA----ENKGGIET 308
+ G++ V+ G +EAD ++V G RP + A + +GGI
Sbjct: 229 QVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILV 288
Query: 309 DDFFKTSADDVYAVGDVATFPMKLY 333
D+ +TS +YA GDV Y
Sbjct: 289 DETLRTSNPGIYAAGDVTGGLQLEY 313
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
V++GGGYIGLE + + +V+++ P +PR D+AA +GI +
Sbjct: 175 VIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNA 233
Query: 254 VAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIET 308
+ + DG + G + ++V VG P L V + +G I+
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293
Query: 309 DDFFKTSADDVYAVGDV 325
DD +T+ +YA GD
Sbjct: 294 DDQLRTTNPGIYAAGDC 310
|
Length = 463 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
V+ G G IG+E + LK +DV++V +P A+++ Y G+KI+
Sbjct: 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-NEDAEVSKEIAKQYKKLGVKIL 231
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLIS---LFKGQVA-ENKG 304
GT N V KDG+ LEAD V+ +G P + L K VA ++G
Sbjct: 232 TGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRG 291
Query: 305 GIETDDFFKTSADDVYAVGDV 325
I DD+ +T+ +YA+GDV
Sbjct: 292 AIAIDDYMRTNVPHIYAIGDV 312
|
Length = 466 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 252
++ GGGYI +E + + + +++Y + R F D+ +GI+I+
Sbjct: 169 ILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEIL-RGFDDDMRRGLAAALEERGIRILPE 227
Query: 253 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAEN-KGGIET 308
+ + DG +K L + AD+V+ G P + L V N G I
Sbjct: 228 DSITSISKDDDGRLK-ATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAV 286
Query: 309 DDFFKTSADDVYAVGDV 325
D++ +TS +YAVGDV
Sbjct: 287 DEYSRTSTPSIYAVGDV 303
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 22/186 (11%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMV-YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 252
VV+G G IGLEL + + V++V Y + C P T + A + +G+K G
Sbjct: 178 VVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-PGTDT-ETAKTLQKALTKQGMKFKLG 235
Query: 253 TVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGGI 306
+ G T ADG ++ TL+AD V+V +G RP + L + +K G+
Sbjct: 236 SKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGM 295
Query: 307 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 366
+D +TS V+ +GDV + PM A K+ ++AV I G
Sbjct: 296 LANDHHRTSVPGVWVIGDVTSGPML-------------AHKAEDEAVACIERIAGKAGEV 342
Query: 367 GYDYLP 372
Y +P
Sbjct: 343 NYGLIP 348
|
Length = 466 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 26/155 (16%)
Query: 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY------PEPWCMPRLFTADIAAFYEGYY 242
K VV+GGG +E + L V++V+ E + RL
Sbjct: 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLK------------ 189
Query: 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR----TLEADIVVVGVGGRPLISLFKGQ 298
N I+++ TV + +V+ V LK+ + L D V + +G P L KG
Sbjct: 190 KNVKIEVLTNTVVKEILGD---DVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGL 246
Query: 299 VAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 332
++ G I D+ +TS ++A GDVA +
Sbjct: 247 GVLDENGYIVVDEEMETSVPGIFAAGDVADKNGRQ 281
|
Length = 305 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 155 RLTDFGVEGADAKNIFYLREIDDA----DKLVEAIKAKKNGKA-----------VVVGGG 199
R F + G + + F+L+E++ A ++V+ I+ VVVGGG
Sbjct: 124 RPNTFNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGG 182
Query: 200 YIGLELSAAL-KINNIDVSMVYPE--PWCMPRLFTA--DIAAFYEGYYANKGIKIIKGTV 254
G+E +A L DV + PE C + A ++ ++ G + ++
Sbjct: 183 PTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLR--- 239
Query: 255 AVGFTTNADGEVKEVK-----LKDGRTLEADIVV--VGVGGRPLISLFKGQVAENKGGIE 307
+G VKEV LKDG + +VV GVG PL K ++G I
Sbjct: 240 RLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVD-KTSRGRIS 298
Query: 308 TDDFFKTS-ADDVYAVGDVAT 327
DD + +V+A+GD A
Sbjct: 299 VDDHLRVKPIPNVFALGDCAA 319
|
Length = 424 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 192 KAVVVGGGYIGLELSA---ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 248
+ + VGGG+I +E + A K V++ Y + R F + + GI
Sbjct: 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-RGFDSTLRKELTKQLRANGIN 247
Query: 249 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA----ENKG 304
I+ T NADG K V + G+TL+ D+V++ +G P + KG
Sbjct: 248 IMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKG 306
Query: 305 GIETDDFFKTSADDVYAVGDV 325
I+ D+F +T+ ++YA+GDV
Sbjct: 307 AIQVDEFSRTNVPNIYAIGDV 327
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 23/154 (14%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA---DIAAFYEGYYANKGI 247
K V+G G IGLEL + + +V+++ +P A +A + +G+
Sbjct: 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILE----ALPAFLAAADEQVAKEAAKAFTKQGL 239
Query: 248 KIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAEN- 302
I G V +G V V D +TLE D ++V +G P G E
Sbjct: 240 DIHLG-VKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSIGRVPNT---DGLGLEAV 294
Query: 303 ------KGGIETDDFFKTSADDVYAVGDVATFPM 330
+G I DD +T+ +VYA+GDV PM
Sbjct: 295 GLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328
|
Length = 475 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 189 KNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 246
KN + VVGGG +E AL + I V++V+ F A+ + N
Sbjct: 139 KNKEVAVVGGGDSAIE--EALYLTRIAKKVTLVHRRD-----KFRAE-KILLDRLKKNPK 190
Query: 247 IKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGGRPLISLFKGQVAE 301
I+ + + D +V+ VK+K+ LE D V + +G P L KG +
Sbjct: 191 IEFLWNSTVKEIV--GDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKGLLEL 248
Query: 302 NKGG-IETDDFFKTSADDVYAVGDV 325
++ G I TD+ +TS V+A GDV
Sbjct: 249 DENGYIVTDEGMRTSVPGVFAAGDV 273
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
+ V+VG GYI +EL+ L + +V + R F + I+ Y +GI +
Sbjct: 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVH 225
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTL-EADIVVVGVGGRPL---ISLFKGQVAEN-KGG 305
K + V +G++ + +DG+++ + D ++ +G +P + L + N KG
Sbjct: 226 KLSKPVKVEKTVEGKLV-IHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQ 284
Query: 306 IETDDFFKTSADDVYAVGDV 325
I D++ T+ +YA+GDV
Sbjct: 285 IIVDEYQNTNVPGIYALGDV 304
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-RLFTADIAAFYEGYYANKGIKII 250
+AVV+GGGYI +E ++ + V + + + +P R F ++ A +GI +
Sbjct: 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE--LPLRGFDDEMRAVVARNLEGRGINLH 262
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA----ENKGGI 306
T T G +V G AD+V+ G P + + G +
Sbjct: 263 PRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAV 320
Query: 307 ETDDFFKTSADDVYAVGDV 325
+ D++ +T+ ++A+GDV
Sbjct: 321 KVDEYSRTNIPSIWAIGDV 339
|
Length = 499 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
++VGGG IG E ++ V++V P +P DIA N G+KI G
Sbjct: 174 LIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-DEDIAHILREKLENDGVKIFTGA 232
Query: 254 VAVGFTTNADGEVKEVKLK-DGRTLE--ADIVVVGVGGRPL---ISLFKGQVAENKGGIE 307
G + K+ + +G E A+ V+V VG +P ++L K V + GI
Sbjct: 233 ALKGL----NSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGIS 288
Query: 308 TDDFFKTSADDVYAVGDVA 326
++ +T+ +YA GDV
Sbjct: 289 VNEHMQTNVPHIYACGDVI 307
|
Length = 458 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVS-MVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 249
GK +VVG Y+ LE + L +DV+ MV R F D A + G+K
Sbjct: 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL---RGFDQDCANKVGEHMEEHGVKF 237
Query: 250 IKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRPL---ISLFKGQVAENK-- 303
+ V + + E G E D V++ +G ++L V NK
Sbjct: 238 KRQFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKT 297
Query: 304 GGIETDDFFKTSADDVYAVGDVA 326
G I D+ +T+ +YAVGD+
Sbjct: 298 GKIPADEEEQTNVPYIYAVGDIL 320
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
G ++GGGYIG+E ++ V+++ +PR DIA ++G+ II
Sbjct: 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE-DRDIADNIATILRDQGVDII 217
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ---VAEN-KGGI 306
V ++ + +V +V + + D +++ G +P + + +A N +G I
Sbjct: 218 L-NAHVERISHHENQV-QVHSEHAQLA-VDALLIASGRQPATASLHPENAGIAVNERGAI 274
Query: 307 ETDDFFKTSADDVYAVGDV 325
D + T+AD+++A+GDV
Sbjct: 275 VVDKYLHTTADNIWAMGDV 293
|
Length = 441 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
+VVG G G E ++A + V++V +P AD A E +A +G+ ++K +
Sbjct: 181 IVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE-DADAAEVLEEVFARRGMTVLKRS 239
Query: 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGG-IETD 309
A DG V V L DGRT+E ++ VG P + L + V G I D
Sbjct: 240 RAESVERTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD 297
Query: 310 DFFKTSADDVYAVGDV 325
+TS +YA GD
Sbjct: 298 RVSRTSVPGIYAAGDC 313
|
Length = 466 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 3e-05
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 25/149 (16%)
Query: 194 VVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA--NKGIK 248
++ G G IG E + AAL + V+++ + L A Y + G+
Sbjct: 179 IIYGAGVIGCEYASIFAAL---GVKVTLINTRDRLLSFLDDEISDALS---YHLRDSGVT 232
Query: 249 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--------GRPLISLFKGQVA 300
I DG + V LK G+ ++AD ++ G L A
Sbjct: 233 IRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTGNTDGLNLENAGL----EA 286
Query: 301 ENKGGIETDDFFKTSADDVYAVGDVATFP 329
+++G ++ ++ ++T+ +YAVGDV FP
Sbjct: 287 DSRGQLKVNENYQTAVPHIYAVGDVIGFP 315
|
Length = 461 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 22/169 (13%)
Query: 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223
AD+K+++ I + L E + ++GGG IGLE + V+++
Sbjct: 139 ADSKHVYDSTGIQSLETLPE--------RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190
Query: 224 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283
+PR +AA + Y GI + N +V + + + T D ++
Sbjct: 191 TILPR-EEPSVAALAKQYMEEDGITFLLN-AHTTEVKNDGDQV--LVVTEDETYRFDALL 246
Query: 284 VGVGGRPLISLFKGQVAEN-------KGGIETDDFFKTSADDVYAVGDV 325
G +P EN +G I+ DD+ +TS V+AVGDV
Sbjct: 247 YATGRKPNTE---PLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDV 292
|
Length = 438 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 39/197 (19%)
Query: 160 GVEGADAKNIF----YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE-LSAALKINNI 214
G+ G + ++ +L ++ A + K+ VV+GGG ++ A ++
Sbjct: 242 GIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKR---VVVIGGGNTAMDAARTAKRLGAE 298
Query: 215 DVSMVYPEPWCMPRLFTADI-AAFYEGYYA-NKGIKIIKGTVAVGFTTNADG----EVKE 268
V++VY R ++ A+ E +A +G++ V + E
Sbjct: 299 SVTIVY-------RRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVR 351
Query: 269 VKLKDGR--------------TLEADIVVVGVGGRP---LISLFKGQVAENKGGIETDDF 311
++L + TL AD+V+ +G P ++S G G I DD
Sbjct: 352 MELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDE 411
Query: 312 -FKTSADDVYAVGDVAT 327
+TS V+A GD+ T
Sbjct: 412 TGRTSLPGVFAGGDIVT 428
|
Length = 457 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 20/152 (13%)
Query: 191 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTA---DIAAFYEGYYAN 244
+ +V+GGG IGLE+ L V M ++ A DI +
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM-------FDQVIPAADKDIVKVFTKRIKK 227
Query: 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVA-- 300
+ I+ T DG ++ K D V+V VG P L + A
Sbjct: 228 Q-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGV 286
Query: 301 --ENKGGIETDDFFKTSADDVYAVGDVATFPM 330
+ +G I D +T+ ++A+GD+ PM
Sbjct: 287 EVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318
|
Length = 471 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 55/266 (20%), Positives = 94/266 (35%), Gaps = 65/266 (24%)
Query: 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCC 142
++ G +++ E D + +L A Y +L + GST ++
Sbjct: 65 RQAGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLS------------- 110
Query: 143 FFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK---KNGKA--VVVG 197
GVEG A ++ I++ EA+ G VVG
Sbjct: 111 -----------------GVEG-AADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVG 152
Query: 198 GGYIGLELSAAL-----------KINNIDVSMVYPE-PWCMPRLFTADIAAFYEGYYANK 245
GG G+E++ AL ++ I + + P P + RL +A +
Sbjct: 153 GGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLAR--------R 204
Query: 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA-ENKG 304
GI++ G + L DGRTL AD ++ G R L + + + G
Sbjct: 205 GIEVH------EGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDG 258
Query: 305 GIETDDFFKTSAD-DVYAVGDVATFP 329
+ D ++ + V+A GD A
Sbjct: 259 FLRVDPTLQSLSHPHVFAAGDCAVIT 284
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 68/280 (24%), Positives = 111/280 (39%), Gaps = 64/280 (22%)
Query: 86 GI-ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFF 144
GI E L +IV +I + L G+ F+ ++V G T++I L K F
Sbjct: 473 GIPEFRLPKKIVDVEIEN---LKKLGVKFETDVIV---GKTITIEELEEEGFKGI----F 522
Query: 145 LRT---LPLFQVLRLTDFGVEGADAKNIFYLRE-------IDDADKLVEA-IKAKKNGKA 193
+ + LP F + G ++ + E +D A + IK K K
Sbjct: 523 IASGAGLPNF-------MNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGK--KV 573
Query: 194 VVVGGGYIGLELS-AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK--GIKII 250
VVGGG ++ + A ++ V++VY R ++ A E K GI+ +
Sbjct: 574 AVVGGGNTAMDSARTAKRLGAERVTIVY-------RRSEEEMPARLEEVKHAKEEGIEFL 626
Query: 251 KGTVAVGFTTNADGEVKEVKLK---------DGR-----------TLEADIVVVGVGGRP 290
+ + + G VK+V L+ GR T++ D+V+V VG P
Sbjct: 627 TLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSP 686
Query: 291 ---LISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 327
+ S G KG I D+ ++S +YA GD+
Sbjct: 687 NPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVR 726
|
Length = 752 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD---IAAFYEGYYANKGIKII 250
+V+G + LEL+ A V+++ R+ + + + E + +GI+++
Sbjct: 182 LVIGASVVALELAQAFARLGSRVTVL-----ARSRVLSQEDPAVGEAIEAAFRREGIEVL 236
Query: 251 KGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRP---LISLFKGQVAENKGGI 306
K T A + D +E L+ + TL A+ ++V G P ++L V +G I
Sbjct: 237 KQTQA----SEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAI 292
Query: 307 ETDDFFKTSADDVYAVGDVATFPMKLY 333
D+ +T+ +YA GD P +Y
Sbjct: 293 RIDEHLQTTVSGIYAAGDCTDQPQFVY 319
|
Length = 468 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 4/142 (2%)
Query: 186 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 245
K K+ + + G GYI +EL + + S ++ + R F I E
Sbjct: 233 KIKEAKRIGIAGSGYIAVELINVVNRLGAE-SYIFARGNRLLRKFDETIINELENDMKKN 291
Query: 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAEN 302
I II + + + D V+ VG P ++L +
Sbjct: 292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTP 351
Query: 303 KGGIETDDFFKTSADDVYAVGD 324
KG I+ DD +TS +YAVGD
Sbjct: 352 KGYIKVDDNQRTSVKHIYAVGD 373
|
Length = 561 |
| >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 20/143 (13%)
Query: 195 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI----- 249
V+GGG+ E + L V+++ EP FT E + I++
Sbjct: 148 VIGGGFAAAEEAVFLTRYASKVTVIVREP-----DFTCA-KLIAEKVKNHPKIEVKFNTE 201
Query: 250 ---IKGTVAV---GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 303
G + F N GE+ E K V V VG P LFKG V +K
Sbjct: 202 LKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFG--VFVFVGYAPSSELFKGVVELDK 259
Query: 304 GG-IETDDFFKTSADDVYAVGDV 325
G I T++ +T+ VYA GD+
Sbjct: 260 RGYIPTNEDMETNVPGVYAAGDL 282
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 9e-04
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Query: 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 248
K K +VGGGYI LE + DV V+ + R F ++ F + +GI+
Sbjct: 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVH-VFIRQKKVLRGFDEEVRDFVAEQMSLRGIE 309
Query: 249 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP------LISLFKGQVAEN 302
+ADG + +K G V+ G +P L + G +
Sbjct: 310 FHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEV--GVKMDK 366
Query: 303 KGGIETDDFFKTSADDVYAVGDV 325
G IE D++ +TS ++AVGDV
Sbjct: 367 NGAIEVDEYSRTSVPSIWAVGDV 389
|
Length = 558 |
| >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 41/198 (20%)
Query: 195 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE---------GYYANK 245
+VG G IGLE +V P +P L AD+A ++E + N
Sbjct: 317 IVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-LLDADVAKYFERVFLKSKPVRVHLNT 375
Query: 246 GIKIIKGT-----VAVGFTTNADGEVKEVK--LKDGRTLEADIVVVGVGGRPL---ISLF 295
I+ ++ V +G + GE K + D + D +V G +P + L
Sbjct: 376 LIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD 435
Query: 296 KGQVAENKGGIETDDFFKTSADD------VYAVGDVATFPMKLYREMRRVEHVDHARKSA 349
K ++ +G + D+ + +D ++ +GD A L A ++
Sbjct: 436 KLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGD-ANGKQML------------AHTAS 482
Query: 350 EQAVKTI--MATEGGKTV 365
QA+K + + +G + V
Sbjct: 483 HQALKVVDWIEGKGKENV 500
|
Length = 659 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 54/232 (23%)
Query: 163 GADAKNIFYLREIDDADKLVEAI----KAKKNGKAV-------VVGGGYIGLELS-AALK 210
GAD L +++A+ + K G A+ VVGGG ++ + AAL+
Sbjct: 632 GADKNGGLKLEG--GNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689
Query: 211 INNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYA--NKGIKIIKGTVAVGFTTNADGEV- 266
+ + V++VY R ++ A+ E Y G++ + F +ADG +
Sbjct: 690 VPGVEKVTVVY-------RRTKQEMPAWREEYEEALEDGVEFKELLNPESF--DADGTLT 740
Query: 267 -KEVKLKD----GR----------TLEADIVVVGVGGRPLISLFK--GQVAENKGGIETD 309
+ +KL + GR TLEAD V+ +G + L K G + KG D
Sbjct: 741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVD 800
Query: 310 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 361
+TS +VY +GDV P + V + AR++A I++ EG
Sbjct: 801 ANGETSLTNVYMIGDVQRGPSTI------VAAIADARRAA----DAILSREG 842
|
Length = 1019 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 188 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247
K GK ++VG YIGLE + L DV++ R F + Y +G
Sbjct: 180 KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFDRQCSEKVVEYMKEQGT 237
Query: 248 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-----GQVAEN 302
++G V + D ++K V DG T D V+ G +P I V ++
Sbjct: 238 LFLEGVVPINI-EKMDDKIK-VLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKS 295
Query: 303 KGGIETDDFFKTSADDVYAVGDVA 326
I +D T+ +++AVGDV
Sbjct: 296 NKIIAPND--CTNIPNIFAVGDVV 317
|
Length = 499 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 461 | |||
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 100.0 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 100.0 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.98 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.98 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.97 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.97 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.97 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.97 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.97 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.97 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.96 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.96 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.96 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.95 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.95 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.95 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.95 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.94 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.93 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.88 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.87 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.86 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.85 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.83 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.8 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.78 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.76 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.75 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.74 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.73 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.73 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.69 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.65 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.63 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.63 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.5 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 99.37 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.37 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.28 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 99.21 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 99.14 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.13 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.09 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 99.06 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 99.06 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 99.03 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 99.02 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.98 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.97 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.96 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.96 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.96 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.95 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.95 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.95 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.94 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.94 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.93 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.92 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.92 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.92 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.91 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.89 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.89 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.88 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.87 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.86 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.85 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.82 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.82 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.81 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.81 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 98.8 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.8 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.79 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.78 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.76 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.75 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.73 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.72 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.71 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.7 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.7 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.69 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.69 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.68 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.68 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.68 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.67 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.67 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.66 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.65 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.65 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.65 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.64 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.64 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 98.63 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.63 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.63 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.63 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.62 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.62 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.6 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.59 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.58 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.58 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.58 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.58 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.58 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.57 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.57 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.56 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.55 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.55 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.54 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.54 | |
| PLN02612 | 567 | phytoene desaturase | 98.54 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.53 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.53 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.53 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.52 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 98.52 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.52 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.52 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.51 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.5 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.49 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.49 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.49 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.48 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.48 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.48 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.48 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.47 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.47 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.47 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.46 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.46 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.46 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.45 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.45 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.45 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.44 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.44 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.44 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.43 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.43 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.43 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.41 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.4 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.4 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.39 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.39 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 98.39 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.39 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.39 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.39 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.38 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.38 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.37 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.37 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.36 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.36 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.35 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.35 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.35 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.35 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.34 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.34 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.34 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.33 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.33 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.32 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 98.32 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.31 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.31 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.3 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.29 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.27 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 98.27 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.27 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.27 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.26 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 98.25 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.25 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.25 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.25 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.23 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.22 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.22 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.22 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.22 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.21 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.21 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 98.21 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.21 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.2 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.2 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.2 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.2 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.2 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.19 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.19 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.18 | |
| PF02852 | 110 | Pyr_redox_dim: Pyridine nucleotide-disulphide oxid | 98.17 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.17 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.17 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.16 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 98.16 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.16 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.15 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.15 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.15 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.14 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 98.14 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.14 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.13 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.13 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.12 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.11 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.11 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.1 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.1 | |
| PLN02487 | 569 | zeta-carotene desaturase | 98.1 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.1 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 98.09 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.09 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.09 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.08 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.08 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.08 | |
| PF14759 | 85 | Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX | 98.08 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 98.06 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.06 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 98.06 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.05 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.05 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 98.05 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.04 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.04 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.04 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.03 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.02 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 98.02 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.02 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.01 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.99 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.99 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.99 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.98 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.98 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.98 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 97.98 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.98 | |
| PLN02507 | 499 | glutathione reductase | 97.97 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.96 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.96 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.96 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.95 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.95 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.93 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.92 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.91 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 97.91 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.91 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.91 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.9 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.9 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.9 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.9 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.89 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.89 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.89 | |
| PLN02568 | 539 | polyamine oxidase | 97.87 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.87 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.85 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.85 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.85 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.84 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.84 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.83 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.83 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.83 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.82 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.82 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.8 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.8 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.8 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 97.8 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 97.79 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.79 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.79 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.78 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.77 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 97.77 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.76 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.76 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.76 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.76 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.75 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.73 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.73 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.72 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 97.71 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.69 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 97.68 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 97.68 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.68 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.68 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.67 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.67 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 97.67 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.66 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.65 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 97.64 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.64 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 97.63 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.63 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.63 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.62 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.61 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.6 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.57 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.56 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.55 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.55 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.55 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.54 | |
| PLN02546 | 558 | glutathione reductase | 97.53 | |
| PLN02985 | 514 | squalene monooxygenase | 97.51 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.51 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.51 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.5 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.48 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.47 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.47 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 97.47 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.47 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.46 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.45 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.45 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.44 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.43 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.42 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.41 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.41 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.39 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.38 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.37 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.36 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.36 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 97.36 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.35 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 97.34 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.32 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.31 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.31 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.3 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 97.3 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 97.29 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.28 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.27 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.25 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.22 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 97.22 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.21 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 97.19 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.12 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.12 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 97.08 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 97.07 | |
| PLN02676 | 487 | polyamine oxidase | 97.07 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.07 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 97.05 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.03 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 97.02 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.02 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.99 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.98 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 96.97 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.96 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 96.94 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 96.89 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.89 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 96.85 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 96.82 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 96.82 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.77 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 96.75 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 96.72 | |
| PLN02985 | 514 | squalene monooxygenase | 96.71 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 96.7 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 96.69 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 96.69 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 96.68 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 96.68 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.67 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.65 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 96.65 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 96.57 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 96.5 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 96.48 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.36 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.35 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 96.33 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.31 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.3 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.28 | |
| PLN03000 | 881 | amine oxidase | 96.27 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.24 | |
| PLN02785 | 587 | Protein HOTHEAD | 96.17 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 96.13 | |
| PF14721 | 133 | AIF_C: Apoptosis-inducing factor, mitochondrion-as | 96.12 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 96.11 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 96.09 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.04 | |
| PLN02976 | 1713 | amine oxidase | 95.99 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.91 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.83 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 95.78 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.76 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.72 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 95.66 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 95.58 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 95.56 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 95.49 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 95.41 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 95.39 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.34 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 95.31 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 95.26 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 95.19 | |
| PLN02815 | 594 | L-aspartate oxidase | 95.19 | |
| TIGR02352 | 337 | thiamin_ThiO glycine oxidase ThiO. This family con | 95.12 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 95.09 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.06 | |
| KOG3923 | 342 | consensus D-aspartate oxidase [Amino acid transpor | 95.04 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.01 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 95.0 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 94.92 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 94.91 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 94.83 |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=425.07 Aligned_cols=392 Identities=27% Similarity=0.404 Sum_probs=327.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|||||||+||++||..|++.+. +.+|+|+++++..+|.+|++++.++........ .....+++.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~ 69 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ 69 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence 46789999999999999999999875 567999999999999999888766543221110 123467788
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.+++++.++.|..++.+.+.+.+.+++++.||+||||||++| +.+| +++
T Consensus 70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~---------------------------~~~p---~~~ 119 (396)
T PRK09754 70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAA---------------------------RPLP---LLD 119 (396)
T ss_pred HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCC---------------------------CCCC---CCC
Confidence 8999999998999999999999998888999999999999999 3333 344
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
...++++++++++++.++++.+. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++..+++.+.+.+.+.++
T Consensus 120 ~~~~~v~~~~~~~da~~l~~~~~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~ 197 (396)
T PRK09754 120 ALGERCFTLRHAGDAARLREVLQ--PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQ 197 (396)
T ss_pred cCCCCEEecCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHH
Confidence 44577999999999999988775 4789999999999999999999999999999999999887678899999999999
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEe
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAV 322 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~ 322 (461)
+.||+++++++++++.. ++. ..+.+.+|+++++|.||+++|.+||..+++. ++.. +++|.||+++||+.|+|||+
T Consensus 198 ~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~ 273 (396)
T PRK09754 198 QAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAG 273 (396)
T ss_pred HCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEc
Confidence 99999999999999975 332 4578899999999999999999999987743 4444 46799999999999999999
Q ss_pred CcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCCcEE-EecCCcc
Q 012545 323 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV-LFGDNDL 401 (461)
Q Consensus 323 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ 401 (461)
|||+..+.. .+...+.++|..|..||++||+||++.. ..|...|++|+..|++.++.+|...++.+ ..++..
T Consensus 274 GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~- 346 (396)
T PRK09754 274 GDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGLP-----LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPE- 346 (396)
T ss_pred cceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCCC-----CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCC-
Confidence 999987766 6666778899999999999999999754 55788999999999999999997655433 333322
Q ss_pred ccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhhccCC
Q 012545 402 ASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGL 455 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (461)
...|..+++++|+|+|+.++| .+.+...+..+|+.+.++ +.+.|.++.+
T Consensus 347 ---~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 395 (396)
T PRK09754 347 ---TQKAIWFNLQNGVLIGAVTLN-QGREIRPIRKWIQSGKTF-DAKLLIDENI 395 (396)
T ss_pred ---CceEEEEEeeCCEEEEEEEEC-CHHHHHHHHHHHHCCCCC-CHHHhcCccc
Confidence 344666777899999999998 567888889999999888 7788888764
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=402.57 Aligned_cols=402 Identities=53% Similarity=0.887 Sum_probs=362.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
...++|||+|++|..|+.++++.+. ...++++.++..+||.++.+++.+.. .+.+...+..+|+++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~-------------~~~~~a~r~~e~Yke 139 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLT-------------VGEGLAKRTPEFYKE 139 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceee-------------ccccccccChhhHhh
Confidence 5789999999999999999999986 46689998888899998777665543 333445678889999
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.+|++++++.|+.+|...+++.+.+|+.++|++|+||||+.+ ++++ +||.
T Consensus 140 ~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~---------------------------~~l~---~pG~ 189 (478)
T KOG1336|consen 140 KGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSA---------------------------KTLD---IPGV 189 (478)
T ss_pred cCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcc---------------------------ccCC---CCCc
Confidence 999999999999999999999999999999999999999988 4444 5777
Q ss_pred CCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHh
Q 012545 165 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 244 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (461)
+.++++++++++++..+...+. ..++|+++|+|++|+|+|..|...+.+||++++.+.++++.|.+.+.+.+++.+++
T Consensus 190 ~~~nv~~ireieda~~l~~~~~--~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~ 267 (478)
T KOG1336|consen 190 ELKNVFYLREIEDANRLVAAIQ--LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYEN 267 (478)
T ss_pred cccceeeeccHHHHHHHHHHhc--cCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHh
Confidence 7899999999999999988886 37789999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhcc-cccCCCcEEeCCCCCCCCCCEEEeC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ-VAENKGGIETDDFFKTSADDVYAVG 323 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~-~~~~~g~i~vd~~~~t~~~~vya~G 323 (461)
+||++++++.+.+++.+++|++..|.+.||++++||.||+.+|.+||+.+++.+ ....+|+|.||+++||++|||||+|
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiG 347 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIG 347 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCccccc
Confidence 999999999999999988899999999999999999999999999999999854 4448999999999999999999999
Q ss_pred cccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCCcEEEecCCcccc
Q 012545 324 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLAS 403 (461)
Q Consensus 324 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 403 (461)
|++..+...++..+++.|+..|+.+|+.|...+...... .|+++|+|++..|+..|...|...++.+.+++.++
T Consensus 348 Dva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~----~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e~-- 421 (478)
T KOG1336|consen 348 DVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQD----AYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLEP-- 421 (478)
T ss_pred ceeecccccccccccchHHHHHHHHHHhhhhhhhccCcc----cccccchHHHHHhhhhccccCcCccceeeeccccc--
Confidence 999999998988888999999999999888877765432 27899999999999999999998889999998773
Q ss_pred CCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhhccCCCcccCC
Q 012545 404 ATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461 (461)
Q Consensus 404 ~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 461 (461)
..|..+|++ +..+++.+-+...++...++.+++.|+.+..++.+...+.+|+.++
T Consensus 422 --~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~~~~~~~~~~ 476 (478)
T KOG1336|consen 422 --GSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSKSGDSFWLTI 476 (478)
T ss_pred --ccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccccchhhHHhh
Confidence 459999999 9999999998888889999999999999998999999999887653
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=408.03 Aligned_cols=397 Identities=23% Similarity=0.281 Sum_probs=300.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC-CC---CCCCCcccccccCCCCCC----CCC-CceeecCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VA---PYERPALSKAYLFPEGTA----RLP-GFHVCVGS 72 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~-~~---~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~ 72 (461)
|++.||+||||+||||..||..+++.|.+ |+++|+.+ .. ....|.++|.++...... ... .+......
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~ 77 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEV 77 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCC
Confidence 34689999999999999999999999987 99999995 31 122355566666544221 010 01110000
Q ss_pred -----------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC--CcEEecCEEEEccCCCcccccccc
Q 012545 73 -----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT--GLIFKYQILVIATGSTVSITSLTS 133 (461)
Q Consensus 73 -----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~~d~liiAtG~~~~~~~~~g 133 (461)
........+++.++|+++.++ ..-+ +.++|.+.+ .++++++++|||||++|.+|++||
T Consensus 78 ~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a~f~--~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~ 154 (454)
T COG1249 78 PKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-ARFV--DPHTVEVTGEDKETITADNIIIATGSRPRIPPGPG 154 (454)
T ss_pred CCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-EEEC--CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCC
Confidence 011123344556799999984 3333 367777765 478999999999999995544333
Q ss_pred ccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCC
Q 012545 134 IRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINN 213 (461)
Q Consensus 134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g 213 (461)
.+...+++.++.....+ .|++++|||+|++|+|+|..++++|
T Consensus 155 ------------------------------~~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG 196 (454)
T COG1249 155 ------------------------------IDGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALG 196 (454)
T ss_pred ------------------------------CCCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcC
Confidence 33344555544332223 4899999999999999999999999
Q ss_pred CcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc--EEecCEEEEccCCCCC
Q 012545 214 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 214 ~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~--~i~aD~vi~a~G~~p~ 291 (461)
.+||++++.+++++. +|+++++.+.+.|++.|+++++++++++++..+++ ..+.+++|+ ++++|.+++|+|++||
T Consensus 197 ~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 197 SKVTVVERGDRILPG-EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred CcEEEEecCCCCCCc-CCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccC
Confidence 999999999999997 89999999999999999999999999999874444 578888776 7999999999999999
Q ss_pred hhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccC
Q 012545 292 ISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 367 (461)
Q Consensus 292 ~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 367 (461)
++-+ +.+++. ++|+|.||+++|||+|+|||+|||++.+. +...|..||++||.||++. .....+
T Consensus 274 ~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~--~~~~~d 341 (454)
T COG1249 274 TDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGG--KRTPID 341 (454)
T ss_pred CCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCC--CCCcCc
Confidence 9843 566777 56899999888889999999999998874 4667889999999999982 233467
Q ss_pred CCCCCeEEEecCCcceEEccCCC------CcEEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEE- 430 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~- 430 (461)
|..+|+.+++.|+++++ |.++ +..+.....+ .+ .+..+|.|+++ ++++|||+|++|+++.|
T Consensus 342 ~~~iP~~ift~Peia~V--Glte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~El 419 (454)
T COG1249 342 YRLIPSVVFTDPEIASV--GLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASEL 419 (454)
T ss_pred ccCCCEEEECCCcceee--eCCHHHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHH
Confidence 89999999999998888 5543 2112221111 11 34678999887 57999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 431 NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.++.+|.++++.+++....-+.+++.+
T Consensus 420 I~~~~~a~~~g~t~~~~~~~i~~HPT~sE 448 (454)
T COG1249 420 INEIALAIEMGATAEDLALTIHAHPTLSE 448 (454)
T ss_pred HHHHHHHHHCCCcHHHHhcCCCCCCChHH
Confidence 58999999999988887777777776654
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=397.83 Aligned_cols=398 Identities=18% Similarity=0.230 Sum_probs=299.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCC-CHhHHHHc
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERL-LPEWYKEK 85 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 85 (461)
+|||||||+||++||..|++++ ++.+|+|||+++.+.|.++.++...- . ...... ..... ...+.++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~~-~----~~~~~~-----~~~~~~~~~~~~~~ 71 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYIG-E----VVEDRK-----YALAYTPEKFYDRK 71 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhhc-C----ccCCHH-----HcccCCHHHHHHhC
Confidence 8999999999999999999875 45679999999988887654332110 0 000000 00111 23455678
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCCC---c--EEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCC
Q 012545 86 GIELILSTEIVRADIASKTLLSATG---L--IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFG 160 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~---~--~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (461)
+++++.+++|++||++++.|.+.++ + ++.||+||||||++|.+ ++
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~---------------------------~~--- 121 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS---------------------------LG--- 121 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC---------------------------CC---
Confidence 9999998899999999999887543 2 46899999999999932 21
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
.+.+++++++++.++..+.+.+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+
T Consensus 122 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~ 197 (438)
T PRK13512 122 ---FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILD 197 (438)
T ss_pred ---CCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHH
Confidence 23456888999999999888876656799999999999999999999999999999999988875 79999999999
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCCCCCC
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADD 318 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~ 318 (461)
.|++.||++++++++++++. ..+++++|+++++|.|++|+|++||.++++. ++.. ++|+|.||+++||++|+
T Consensus 198 ~l~~~gI~i~~~~~v~~i~~------~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~ 271 (438)
T PRK13512 198 ELDKREIPYRLNEEIDAING------NEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPN 271 (438)
T ss_pred HHHhcCCEEEECCeEEEEeC------CEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCC
Confidence 99999999999999999963 1467788889999999999999999988754 4555 56889999999999999
Q ss_pred EEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCCc------
Q 012545 319 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------ 392 (461)
Q Consensus 319 vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------ 392 (461)
|||+|||+..+....+.....+....|.+||+.+|+||++... .....+..+|...+ ++..+..+|.++.+
T Consensus 272 IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~--~~~~ia~vGlte~~a~~~~~ 348 (438)
T PRK13512 272 IYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT-IEFKGFLGNNIVKF--FDYTFASVGVKPNELKQFDY 348 (438)
T ss_pred EEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCc-cccCCcccceEEEE--cCceEEeecCCHHHHccCCc
Confidence 9999999975433333333345666788999999999986421 11113334555444 44455555766522
Q ss_pred EE-EecC--Ccc--ccCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhh-hccCCCcc
Q 012545 393 TV-LFGD--NDL--ASATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL-KNEGLSFA 458 (461)
Q Consensus 393 ~~-~~~~--~~~--~~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 458 (461)
.+ .+.. ... ...+.+|.|+++ ++++|||+|++|++ +++ ++.++.+|+.+++++|+..+ ..+.++|.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~ 424 (438)
T PRK13512 349 KMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYS 424 (438)
T ss_pred EEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence 11 1110 110 123467888877 57999999999986 666 78999999999999987765 55566654
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=395.84 Aligned_cols=405 Identities=21% Similarity=0.280 Sum_probs=304.8
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
+|||||||+||++||..|++.+. ..+|+|||+++.+.|..+.+.. +.... ...+ ........+.+++.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~--~~~~-------~~~~~~~~~~~~~~g 70 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGF--FDDP-------NTMIARTPEEFIKSG 70 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-Eeccc--cCCH-------HHhhcCCHHHHHHCC
Confidence 79999999999999999999763 4569999999887665433221 11100 0000 001234566788899
Q ss_pred cEEEcCCeEEEEeCCCCEEEcCC---CcEEe--cCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCC
Q 012545 87 IELILSTEIVRADIASKTLLSAT---GLIFK--YQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV 161 (461)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~---~~~~~--~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (461)
++++.+++|++++++.+.+.+.+ +.++. ||+||+|||++|..|. +
T Consensus 71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~------------------------------i 120 (444)
T PRK09564 71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP------------------------------I 120 (444)
T ss_pred CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC------------------------------C
Confidence 99998889999999998887754 55566 9999999999995443 4
Q ss_pred CCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHH
Q 012545 162 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 241 (461)
Q Consensus 162 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~ 241 (461)
+|.+.+++++++++.++.++++.+....+++++|+|+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.
T Consensus 121 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~ 200 (444)
T PRK09564 121 KNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEE 200 (444)
T ss_pred CCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHH
Confidence 45555678899999999888888876567999999999999999999999999999999999888755799999999999
Q ss_pred HHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCCCCCCE
Q 012545 242 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDV 319 (461)
Q Consensus 242 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~v 319 (461)
+++.||+++++++++++.. ++.+..+.+++ .++++|.+++|+|++|+.++++. ++.. ++|+|.||+++||+.|||
T Consensus 201 l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~-~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~I 277 (444)
T PRK09564 201 LRENGVELHLNEFVKSLIG--EDKVEGVVTDK-GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENI 277 (444)
T ss_pred HHHCCCEEEcCCEEEEEec--CCcEEEEEeCC-CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCE
Confidence 9999999999999999965 44444555554 47999999999999999987754 4655 578999999999999999
Q ss_pred EEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC------cE
Q 012545 320 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT 393 (461)
Q Consensus 320 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~ 393 (461)
||+|||+..+....+.....+.+..|.+||+++|+||++.... .+. ..+.....+++..+..+|.++. ..
T Consensus 278 yA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~---~~~-~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~ 353 (444)
T PRK09564 278 YAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVS---FKG-TLGSACIKVLDLEAARTGLTEEEAKKLGID 353 (444)
T ss_pred EEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCC---CCC-cccceEEEECCEEEEEecCCHHHHHHCCCC
Confidence 9999999876654454445578889999999999999975311 111 1222223345666677786642 11
Q ss_pred ---EEecCCcc----ccCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhhccC-CCccc
Q 012545 394 ---VLFGDNDL----ASATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNEG-LSFAS 459 (461)
Q Consensus 394 ---~~~~~~~~----~~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 459 (461)
..+..... .....+|.|+.+ ++++|||+|++|+. +.+ ++.++.+|+++++++++..+.-+- ++|++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~ 431 (444)
T PRK09564 354 YKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFAR 431 (444)
T ss_pred eEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence 11111111 123467888877 58999999999985 655 799999999999998865444222 44443
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=406.23 Aligned_cols=389 Identities=20% Similarity=0.336 Sum_probs=306.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+++|||||+|+||+.+|..|++++. +..+|+||++++..+|.++.++..+... .... ......++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~-----------l~~~~~~~~~ 70 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEE-----------LSLVREGFYE 70 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHH-----------ccCCCHHHHH
Confidence 4589999999999999999987642 3457999999999999987776543221 1111 1234578889
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.+++++.+++|+.++++.+.|.+.+++++.||+||||||++|++|. +||
T Consensus 71 ~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~------------------------------ipG 120 (847)
T PRK14989 71 KHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP------------------------------IKG 120 (847)
T ss_pred hCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCC------------------------------CCC
Confidence 99999999999999999999999988988999999999999995544 455
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
.+..+++.+++++++.++++.+. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++..++++..+.+.+.|+
T Consensus 121 ~~~~~v~~~rt~~d~~~l~~~~~--~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~ 198 (847)
T PRK14989 121 SETQDCFVYRTIEDLNAIEACAR--RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIE 198 (847)
T ss_pred CCCCCeEEECCHHHHHHHHHHHh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHH
Confidence 55667899999999999887765 4789999999999999999999999999999999999887689999999999999
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh-ccccc-CCCcEEeCCCCCCCCCCEEE
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYA 321 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vya 321 (461)
+.||++++++.++++..+.++....+.+++|+++++|.||+|+|++||+++++ .++.. ++|+|.||++|||++|+|||
T Consensus 199 ~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYA 278 (847)
T PRK14989 199 SMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYA 278 (847)
T ss_pred HCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEE
Confidence 99999999999999976333455678899999999999999999999999874 45665 57899999999999999999
Q ss_pred eCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC-CeEEEecCCcceEEccCCCCc-----EEE
Q 012545 322 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGD-----TVL 395 (461)
Q Consensus 322 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~-----~~~ 395 (461)
+|||+......+ ..+..|..||++||.||++.. ..|... .....+.+++.+..+|...+. .+.
T Consensus 279 iGD~a~~~~~~~------gl~~~a~~~a~vaa~~i~g~~-----~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~ 347 (847)
T PRK14989 279 IGECASWNNRVF------GLVAPGYKMAQVAVDHLLGSE-----NAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYV 347 (847)
T ss_pred eecceeEcCccc------ccHHHHHHHHHHHHHHhcCCC-----cCCCCcccceEEEECCcceEecccccCCCCCceeEE
Confidence 999998765433 467889999999999999764 223221 112344566666666754432 122
Q ss_pred ecCCccccCCCcEEEEEE--eCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCC-hhhhhcc
Q 012545 396 FGDNDLASATHKFGTYWI--KDGKVVGVFLESGTPEENKAIAKVARVQPSVES-LDVLKNE 453 (461)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~--~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 453 (461)
+.+. ....|.|+++ ++++|+|++++|+. .+...+..++.+++++.. .+.|..+
T Consensus 348 ~~~~----~~~~y~Klv~~~~~~~LlGa~lvGd~-~~~~~l~~~~~~~~~l~~~~~~l~~~ 403 (847)
T PRK14989 348 YLDE----SKEIYKRLIVSEDNKTLLGAVLVGDT-SDYGNLLQLVLNAIELPENPDSLILP 403 (847)
T ss_pred EEcC----CCCEEEEEEEECCCCEEEEEEEECCH-HHHHHHHHHHHcCCCCccchhheecC
Confidence 2221 1457888888 46799999999954 455556666667777753 4455443
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=400.11 Aligned_cols=399 Identities=19% Similarity=0.265 Sum_probs=287.0
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC------CCCCCceee--
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT------ARLPGFHVC-- 69 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~-- 69 (461)
|||..|||+||||||||++||..|+++|++ |+|+|+..... +..|.++|.++..... ....++...
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP 77 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 788899999999999999999999999987 99999975321 2223334433221100 000011000
Q ss_pred cCCC--------------CCCCCHhHHHHc-CcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccc
Q 012545 70 VGSG--------------GERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
...+ .......++++. +++++.++.+. .+.+++.+ +++++.||++|||||++|.+|++||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~ 153 (463)
T PRK06370 78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGL 153 (463)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCC
Confidence 0000 011233455565 99999885442 35667766 45679999999999999976665554
Q ss_pred cccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC
Q 012545 135 RSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 214 (461)
Q Consensus 135 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~ 214 (461)
+...+++..+..+.. ..+++++|||+|++|+|+|..|++.|.
T Consensus 154 ------------------------------~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~ 195 (463)
T PRK06370 154 ------------------------------DEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGS 195 (463)
T ss_pred ------------------------------CcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 223344333222211 147899999999999999999999999
Q ss_pred cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCcEEecCEEEEccCCCCChh
Q 012545 215 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+|+++++.+.+++. +++++.+.+.+.|++.||+++++++|.+++.++++....+... ++.++++|.||+|+|++||++
T Consensus 196 ~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 196 EVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred eEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 99999999999887 7999999999999999999999999999987333322233333 345799999999999999998
Q ss_pred hh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC
Q 012545 294 LF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD 369 (461)
Q Consensus 294 ~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 369 (461)
.+ ..++.. .+|+|.||+++||+.|+|||+|||++.+ .....|..||+.||+||++... ....+.
T Consensus 275 ~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~ 342 (463)
T PRK06370 275 DLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGR--RKVSDR 342 (463)
T ss_pred CcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--CCcccc
Confidence 32 344555 5788999999999999999999999765 4567899999999999987532 124556
Q ss_pred CCCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 370 YLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
.+|+..+..+++..+ |.++ |..+.. .+.... ...++|.|+++ ++++|||+|++|+++.+ ++
T Consensus 343 ~~p~~~~~~p~ia~v--G~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~ 420 (463)
T PRK06370 343 IVPYATYTDPPLARV--GMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIH 420 (463)
T ss_pred cCCeEEEcCCCcEee--eCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHH
Confidence 678877666655544 6553 322221 221111 23567888888 48999999999999888 68
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 433 AIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.++.+|+.+++++|+..+.-+.+++.+
T Consensus 421 ~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (463)
T PRK06370 421 EILDAMYAGAPYTTLSRAIHIHPTVSE 447 (463)
T ss_pred HHHHHHHCCCCHHHHhcCcccCCChHH
Confidence 999999999999998888877777764
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=397.29 Aligned_cols=399 Identities=18% Similarity=0.181 Sum_probs=290.0
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCcccccccCCCC----CCCCCCc---eee
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEG----TARLPGF---HVC 69 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~---~~~ 69 (461)
|++..|||+||||||||++||..|++.|++ |+|+|+++... +..|..++.+..... ....+.+ ...
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~ 77 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK 77 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 777889999999999999999999999987 99999964321 112222332211100 0000000 000
Q ss_pred cCCC--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcccccccc
Q 012545 70 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVSITSLTS 133 (461)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g 133 (461)
...+ ......+++++.+++++.+ .+..++.....+...+++ ++.||++|||||++|..|++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~-- 154 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD-- 154 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC--
Confidence 0000 0012234556789999998 566565544445555554 68999999999999944322
Q ss_pred ccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCC
Q 012545 134 IRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINN 213 (461)
Q Consensus 134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g 213 (461)
++.+..++++..+ +..+. ..+++++|||+|++|+|+|..|++.|
T Consensus 155 ----------------------------~~~~~~~v~~~~~---~~~~~-----~~~~~v~IiGgG~~g~E~A~~l~~~g 198 (461)
T PRK05249 155 ----------------------------VDFDHPRIYDSDS---ILSLD-----HLPRSLIIYGAGVIGCEYASIFAALG 198 (461)
T ss_pred ----------------------------CCCCCCeEEcHHH---hhchh-----hcCCeEEEECCCHHHHHHHHHHHHcC
Confidence 2223344554332 22221 14789999999999999999999999
Q ss_pred CcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 214 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 214 ~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.+|+++++.+++++. +++++.+.+.+.+++.||++++++++++++.++++ ..+++.+|+++++|.|++|+|++||++
T Consensus 199 ~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 199 VKVTLINTRDRLLSF-LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred CeEEEEecCCCcCCc-CCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCcccc
Confidence 999999999999986 89999999999999999999999999999863332 456678888999999999999999998
Q ss_pred hh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC
Q 012545 294 LF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD 369 (461)
Q Consensus 294 ~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 369 (461)
.+ ..++.. ++|+|.||+++||+.|+|||+|||++.+ .....|..||+.||.+|++.. ....+.
T Consensus 276 ~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~ 342 (461)
T PRK05249 276 GLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEA---TAHLIE 342 (461)
T ss_pred CCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCC---cccccC
Confidence 54 344555 5788999999999999999999999754 457789999999999999643 125667
Q ss_pred CCCeEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 370 YLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
.+|+.+++.++++.+ |.++ |..+. +.....+ ....+|.|+++ ++++|||+|++|+++.+ ++
T Consensus 343 ~~p~~i~~~p~ia~v--G~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~ 420 (461)
T PRK05249 343 DIPTGIYTIPEISSV--GKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIH 420 (461)
T ss_pred CCCeEEECCCcceEe--cCCHHHHHHcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHH
Confidence 899998888877655 5543 22111 2222211 23567888887 57999999999999888 68
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 433 AIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.++.+|+.++|++|+..+.-+.+++.+
T Consensus 421 ~~~~ai~~~~t~~~l~~~~~~~Pt~~e 447 (461)
T PRK05249 421 IGQAIMEQKGTIEYFVNTTFNYPTMAE 447 (461)
T ss_pred HHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence 999999999999998777766666653
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=393.27 Aligned_cols=394 Identities=19% Similarity=0.217 Sum_probs=288.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC---------C-C---CCCCCCcccccccCCCCC----CCCCCce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---------A-V---APYERPALSKAYLFPEGT----ARLPGFH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~---------~-~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (461)
.||++||||||||+.||..++++|.+ |+|||+. . . +.+..|.++|.++..... .....+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999987 9999962 1 1 112223344554322110 0000000
Q ss_pred eecCCC------------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcc
Q 012545 68 VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVS 127 (461)
Q Consensus 68 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~ 127 (461)
...... ........+...+++++.+ ++..+++....|.+.+|+ ++.||+||||||++|.
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 000000 0011223445579999998 778888776677777775 5889999999999996
Q ss_pred ccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHH
Q 012545 128 ITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 207 (461)
Q Consensus 128 ~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~ 207 (461)
.|.+||.+ . .. +.+++..+. . .+++++|||+|++|+|+|.
T Consensus 181 ~p~ipG~~------------------------------~--~~---~~~~~~~l~----~-~~k~vvVIGgG~ig~E~A~ 220 (499)
T PLN02507 181 RPNIPGKE------------------------------L--AI---TSDEALSLE----E-LPKRAVVLGGGYIAVEFAS 220 (499)
T ss_pred CCCCCCcc------------------------------c--ee---chHHhhhhh----h-cCCeEEEECCcHHHHHHHH
Confidence 55544421 1 11 233333332 1 3689999999999999999
Q ss_pred HHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 208 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 208 ~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.|++.|.+|+++++.+++++. +++++.+.+.+.|++.||+++++++|++++.++++ ..+.+.+|+++++|.|++++|
T Consensus 221 ~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G 297 (499)
T PLN02507 221 IWRGMGATVDLFFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATG 297 (499)
T ss_pred HHHHcCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeec
Confidence 999999999999999988886 89999999999999999999999999999863333 457778888999999999999
Q ss_pred CCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCC
Q 012545 288 GRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363 (461)
Q Consensus 288 ~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 363 (461)
++||++++ ..++.. ++|+|.||+++||+.|||||+|||++.+ .....|..||++||+||++...
T Consensus 298 ~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~-- 365 (499)
T PLN02507 298 RAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQP-- 365 (499)
T ss_pred CCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCC--
Confidence 99999863 344555 5688999999999999999999999754 3567899999999999986532
Q ss_pred cccCCCCCCeEEEecCCcceEEccCCC-------CcEEEec--CCccc------cCCCcEEEEEE--eCCEEEEEEEecC
Q 012545 364 TVTGYDYLPYFYSRAFDLSWQFYGDNV-------GDTVLFG--DNDLA------SATHKFGTYWI--KDGKVVGVFLESG 426 (461)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~~~~~~--~~~~~------~~~~~~~~~~~--~~~~i~G~~~~g~ 426 (461)
....|..+|+.+++.++++.+ |.++ +..+... ...+. ...++|.|+++ ++++|||+|++|+
T Consensus 366 ~~~~~~~~p~~if~~p~ia~v--Glte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~ 443 (499)
T PLN02507 366 TKPDYENVACAVFCIPPLSVV--GLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGP 443 (499)
T ss_pred CcCCCCCCCeEEECCCccEEE--eCCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECC
Confidence 224566789888887777666 5443 1112111 11111 12457888887 5899999999999
Q ss_pred CHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 427 TPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 427 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+ ++.++.+|+.++|++|+..+.-+.+++.+
T Consensus 444 ~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E 477 (499)
T PLN02507 444 DAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAE 477 (499)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHH
Confidence 9877 69999999999999998877777777764
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=393.32 Aligned_cols=396 Identities=21% Similarity=0.244 Sum_probs=288.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--C-CCCCcccccccCCCCC----CC-CCCceeecCC-
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--P-YERPALSKAYLFPEGT----AR-LPGFHVCVGS- 72 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--~-~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~- 72 (461)
|+..|||+||||||||++||..|+++|++ |+|+|++... + ...|.++|.++..... .. .+.+......
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN 77 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence 34579999999999999999999999987 9999997431 1 1223334433322100 00 0000000000
Q ss_pred ----------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccc
Q 012545 73 ----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRS 136 (461)
Q Consensus 73 ----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~ 136 (461)
.........+++.+++++.+ ++..++ .++|.+ +++++.||+||||||++|.+|.+||.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~- 152 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPDIPGAE- 152 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcc-
Confidence 00011223355679999998 566554 467777 667899999999999999766655532
Q ss_pred cCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 012545 137 KHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDV 216 (461)
Q Consensus 137 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~V 216 (461)
.+++. .+...+. ..+++++|||+|++|+|+|..|.+.|.+|
T Consensus 153 -------------------------------~~~~~---~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~V 193 (450)
T PRK06116 153 -------------------------------YGITS---DGFFALE-----ELPKRVAVVGAGYIAVEFAGVLNGLGSET 193 (450)
T ss_pred -------------------------------eeEch---hHhhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 11111 1111110 13689999999999999999999999999
Q ss_pred EEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh-
Q 012545 217 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF- 295 (461)
Q Consensus 217 tli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~- 295 (461)
+++++.+.+++. +++++.+.+.+.|++.||+++++++|++++.++++. ..+.+.+|+++++|.||+|+|++|+++.+
T Consensus 194 tlv~~~~~~l~~-~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~ 271 (450)
T PRK06116 194 HLFVRGDAPLRG-FDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLG 271 (450)
T ss_pred EEEecCCCCccc-cCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCC
Confidence 999999988876 799999999999999999999999999998743442 35778889899999999999999999843
Q ss_pred --hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 --~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++.. ++|+|.||+++||++|+|||+|||++.+ +.+..|..||+.||+||++... .....|..+|
T Consensus 272 l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~p 340 (450)
T PRK06116 272 LENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKP-DEKLDYSNIP 340 (450)
T ss_pred chhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCC-CCcCCcCCCC
Confidence 345555 5788999999999999999999999654 4677899999999999987432 0235677899
Q ss_pred eEEEecCCcceEEccCCC-------Cc-EEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 373 YFYSRAFDLSWQFYGDNV-------GD-TVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~-------~~-~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
+.+++.++++.+ |.++ .+ .+.....+ .. ..+++|.|+++ ++++|||+|++|+++.+ ++.
T Consensus 341 ~~if~~p~~a~v--Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~ 418 (450)
T PRK06116 341 TVVFSHPPIGTV--GLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQG 418 (450)
T ss_pred eEEeCCCccEEe--eCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHH
Confidence 988887776666 5443 11 12211111 00 24578899888 47999999999999888 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCccc
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+|+.++|++|+..+.-+.+++.+
T Consensus 419 ~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T PRK06116 419 FAVAIKMGATKADFDNTVAIHPTAAE 444 (450)
T ss_pred HHHHHHCCCCHHHHhcccccCCChHH
Confidence 99999999999998888777777764
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-48 Score=390.87 Aligned_cols=393 Identities=21% Similarity=0.263 Sum_probs=288.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC----CCCCCceeecCC-----
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVGS----- 72 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 72 (461)
.|||+||||||||++||..++++|++ |+|+|++.... ...|.++|.++..... .+.+.+......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 58999999999999999999999987 99999964321 2223344433322110 111111110000
Q ss_pred ------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCcc
Q 012545 73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCL 140 (461)
Q Consensus 73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~ 140 (461)
.........+++.+++++.+ ++..++.....+. .++++++||+||||||++|..|++||..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i~G~~----- 151 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNLPGHE----- 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCCCCcc-----
Confidence 00112334456789999987 7777765433332 4567899999999999999666555532
Q ss_pred ccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 012545 141 CCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220 (461)
Q Consensus 141 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~ 220 (461)
. .+ +..++..+. . .+++++|||+|++|+|+|..+++.|.+|++++
T Consensus 152 -------------------------~--~~---~~~~~~~l~----~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~ 196 (446)
T TIGR01424 152 -------------------------L--GI---TSNEAFHLP----T-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIY 196 (446)
T ss_pred -------------------------c--ee---chHHhhccc----c-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEE
Confidence 0 11 112222221 1 37899999999999999999999999999999
Q ss_pred cCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh---hc
Q 012545 221 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KG 297 (461)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~---~~ 297 (461)
+.+.+++. +++++.+.+.+.|++.||++++++++++++.++++ ..+++.+|+++++|.||+|+|++||++.+ ..
T Consensus 197 ~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~ 273 (446)
T TIGR01424 197 RGELILRG-FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAA 273 (446)
T ss_pred eCCCCCcc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCcccc
Confidence 99998887 79999999999999999999999999999863333 45677788899999999999999999853 34
Q ss_pred cccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEE
Q 012545 298 QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYS 376 (461)
Q Consensus 298 ~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~ 376 (461)
++.. ++|+|.||+++||++|+|||+|||++.+ .....|.+||+.||+||++... ....+..+|+.++
T Consensus 274 g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~~i~~~~~--~~~~~~~~p~~if 341 (446)
T TIGR01424 274 GVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRI----------NLTPVAIMEATCFANTEFGNNP--TKFDHDLIATAVF 341 (446)
T ss_pred CeEECCCCcEEeCCCCccCCCCEEEeeccCCCc----------cchhHHHHHHHHHHHHHhcCCC--CccCcCCCCeEEe
Confidence 4555 5688999999999999999999999754 4577899999999999987431 1245667899888
Q ss_pred ecCCcceEEccCCC------C-cEEEec-----CCcc---ccCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHH
Q 012545 377 RAFDLSWQFYGDNV------G-DTVLFG-----DNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVA 438 (461)
Q Consensus 377 ~~~~~~~~~~g~~~------~-~~~~~~-----~~~~---~~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~ 438 (461)
+.++++.+ |.++ + ..+... .... ....++|.|+++ ++++|||+|++|+++.+ ++.++.+|
T Consensus 342 ~~p~ia~v--G~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai 419 (446)
T TIGR01424 342 SQPPLGTV--GLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIAL 419 (446)
T ss_pred CCchhEEE--ECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 87776666 5443 1 211111 1110 123467888888 58999999999999888 68999999
Q ss_pred HcCCCCCChhhhhccCCCccc
Q 012545 439 RVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++++|++|+..+.-+.+++.+
T Consensus 420 ~~~~t~~~l~~~~~~hPt~~e 440 (446)
T TIGR01424 420 KMGATKADFDSTVGIHPSSAE 440 (446)
T ss_pred HcCCCHHHHhhccccCCChHH
Confidence 999999998888777777765
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=389.46 Aligned_cols=395 Identities=17% Similarity=0.223 Sum_probs=286.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC----CCCCCceeecC----C
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVG----S 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~ 72 (461)
+.|||+||||||||++||..|++.|.+ |+|+|++.... ...|.++|.++..... ...+.+..... .
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF 77 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence 469999999999999999999999987 99999975321 1223334433322110 00011100000 0
Q ss_pred --------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccc-cccccccc
Q 012545 73 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSIT-SLTSIRSK 137 (461)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~-~~~g~~~~ 137 (461)
.........+++.+++++.++... .+.++|.+ +++.+.||++|||||++|.+| .+||.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~-- 151 (450)
T TIGR01421 78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE-- 151 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc--
Confidence 000112334556799999985432 24566666 456799999999999999665 555431
Q ss_pred CccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 012545 138 HCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS 217 (461)
Q Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vt 217 (461)
. .+ +.++...+. . .+++++|||+|++|+|+|..|++.|.+|+
T Consensus 152 ----------------------------~--~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vt 193 (450)
T TIGR01421 152 ----------------------------L--GT---DSDGFFALE----E-LPKRVVIVGAGYIAVELAGVLHGLGSETH 193 (450)
T ss_pred ----------------------------e--eE---cHHHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCcEE
Confidence 0 01 112221111 1 37899999999999999999999999999
Q ss_pred EEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cEEecCEEEEccCCCCChhhh-
Q 012545 218 MVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLF- 295 (461)
Q Consensus 218 li~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~~p~~~~~- 295 (461)
++++.+++++. +++++.+.+.+.|++.||++++++.+++++.+.++ ...+++++| +++++|.|++|+|++||++++
T Consensus 194 li~~~~~il~~-~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~ 271 (450)
T TIGR01421 194 LVIRHERVLRS-FDSMISETITEEYEKEGINVHKLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLG 271 (450)
T ss_pred EEecCCCCCcc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCC
Confidence 99999999876 89999999999999999999999999999863333 245777788 579999999999999999853
Q ss_pred --hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 --~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++.. .+|+|.||+++||++|+|||+|||++.+ ..+..|..||+.||+||++... .....|..+|
T Consensus 272 l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~p 340 (450)
T TIGR01421 272 LENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKT-DDKLDYNNVP 340 (450)
T ss_pred ccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCC-CCccCcccCC
Confidence 345555 5788999999999999999999999765 3567899999999999986431 1235677899
Q ss_pred eEEEecCCcceEEccCCC-------Cc-EEEe--cCCccc------cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 373 YFYSRAFDLSWQFYGDNV-------GD-TVLF--GDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~-------~~-~~~~--~~~~~~------~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
+..++.++++.+ |.++ |. .+.. ...... ...++|.|+++ ++|+|||+|++|+++.+ ++.
T Consensus 341 ~~~f~~p~ia~v--Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~ 418 (450)
T TIGR01421 341 TVVFSHPPIGTI--GLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQG 418 (450)
T ss_pred eEEeCCCceEEE--eCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHH
Confidence 988887777666 5443 21 1111 111111 23567888877 48999999999999988 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
++.+|++++|++|+..+.-+.+++++.
T Consensus 419 ~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T TIGR01421 419 FAVAIKMGATKADFDNTVAIHPTSSEE 445 (450)
T ss_pred HHHHHHCCCCHHHHhhcccCCCChHHH
Confidence 999999999999988888788877653
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=399.18 Aligned_cols=382 Identities=24% Similarity=0.368 Sum_probs=308.5
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcCc
Q 012545 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (461)
Q Consensus 8 vvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (461)
|||||+|+||++||.+|++.+....+|+||++++..+|.++.++..+........+ .....+++++.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l-----------~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDI-----------TLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHc-----------cCCCHHHHHHCCC
Confidence 69999999999999999987644567999999999999988776532211111111 2345788999999
Q ss_pred EEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCC
Q 012545 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAK 167 (461)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 167 (461)
+++++++|+.++++.+.|.+.+++++.||+||+|||+.|+.|+ +||.+.+
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~------------------------------ipG~~~~ 119 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILP------------------------------IPGADKK 119 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCC------------------------------CCCCCCC
Confidence 9999999999999999999999988999999999999995443 4555667
Q ss_pred CEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCc
Q 012545 168 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247 (461)
Q Consensus 168 ~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV 247 (461)
+++.+++++++.++++.+. ..++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++...+.+.+.+++.||
T Consensus 120 ~v~~~rt~~d~~~i~~~~~--~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV 197 (785)
T TIGR02374 120 GVYVFRTIEDLDAIMAMAQ--RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGL 197 (785)
T ss_pred CEEEeCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCC
Confidence 7999999999999888765 47899999999999999999999999999999999998877899999999999999999
Q ss_pred EEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEeCccc
Q 012545 248 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVA 326 (461)
Q Consensus 248 ~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~ 326 (461)
++++++.++++.. ++....|+++||+++++|.||+++|.+|+.++++. ++..+ |+|.||++|||++|+|||+|||+
T Consensus 198 ~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a 274 (785)
T TIGR02374 198 TFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECA 274 (785)
T ss_pred EEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecc
Confidence 9999999999975 45567889999999999999999999999998753 45544 78999999999999999999999
Q ss_pred ccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC-eEEEecCCcceEEccCCCCc----EEEecCCcc
Q 012545 327 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP-YFYSRAFDLSWQFYGDNVGD----TVLFGDNDL 401 (461)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~ 401 (461)
..+...+ ..+..|..||+++|.||++... ..|...+ ....+.+++.+...|..... .+.+.+..
T Consensus 275 ~~~~~~~------gl~~~a~~qa~vaA~ni~g~~~----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~- 343 (785)
T TIGR02374 275 EHNGRVY------GLVAPLYEQAKVLADHICGVEC----EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQ- 343 (785)
T ss_pred eeCCccc------ccHHHHHHHHHHHHHHhcCCCC----cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCC-
Confidence 8765433 4678899999999999997531 2333322 33456678877777854321 22232221
Q ss_pred ccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhh
Q 012545 402 ASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 450 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 450 (461)
...|.++++++++|+|++++| .+.+...+..++.++.++.+...|
T Consensus 344 ---~~~y~kl~~~~~rLlGavlvg-d~~~~~~L~~li~~~~~l~~~~~l 388 (785)
T TIGR02374 344 ---KGIYKKLVLSDDKLLGAVLFG-DTSDYGRLLDMVLKQADISEDPAI 388 (785)
T ss_pred ---CCEEEEEEEECCEEEEEEEEC-CHHHHHHHHHHHHcCCCCCcChhh
Confidence 446888999999999999998 456788899999988877653333
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-48 Score=390.25 Aligned_cols=395 Identities=19% Similarity=0.230 Sum_probs=280.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCC-CcccccccCCCCC----CCCCCceeecCC-
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYER-PALSKAYLFPEGT----ARLPGFHVCVGS- 72 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~- 72 (461)
|+.+|||+||||||||++||..|++.|.+ |+|||+.+.. +..+ |.++|.++..... .....+......
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP 77 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 45679999999999999999999999987 9999987432 2222 3334433321100 000000000000
Q ss_pred ----------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEE--EcCCC--cEEecCEEEEccCCCccccccc
Q 012545 73 ----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVSITSLT 132 (461)
Q Consensus 73 ----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~liiAtG~~~~~~~~~ 132 (461)
........+++..||+++.+ .+..++ .+++ ...+| .++.||+||||||++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~----- 149 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPI----- 149 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCC-----
Confidence 00011223456679999997 444444 4444 44455 46899999999999993
Q ss_pred cccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC
Q 012545 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 212 (461)
Q Consensus 133 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~ 212 (461)
.+|. +++ +.+++++. .++..+. ..+++++|||+|++|+|+|..|++.
T Consensus 150 ----------------------~~p~--~~~-~~~~v~~~---~~~~~~~-----~~~~~vvIiGgG~iG~E~A~~l~~~ 196 (471)
T PRK06467 150 ----------------------QLPF--IPH-DDPRIWDS---TDALELK-----EVPKRLLVMGGGIIGLEMGTVYHRL 196 (471)
T ss_pred ----------------------CCCC--CCC-CCCcEECh---HHhhccc-----cCCCeEEEECCCHHHHHHHHHHHHc
Confidence 2221 222 22334432 3333321 1468999999999999999999999
Q ss_pred CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC--C--cEEecCEEEEccCC
Q 012545 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGG 288 (461)
Q Consensus 213 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--G--~~i~aD~vi~a~G~ 288 (461)
|.+||++++.+++++. +++++.+.+.+.|++. |++++++++++++..+++ ..+++.+ | +++++|.||+|+|+
T Consensus 197 G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 197 GSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred CCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecc
Confidence 9999999999999987 8999999999999998 999999999999863333 3455443 2 46999999999999
Q ss_pred CCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCc
Q 012545 289 RPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 364 (461)
Q Consensus 289 ~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 364 (461)
+||++++ ..++.. ++|+|.||+++||++|+|||+|||++.+ ..+..|..||+.||.+|++.. .
T Consensus 273 ~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~---~ 339 (471)
T PRK06467 273 VPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKK---H 339 (471)
T ss_pred cccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCC---C
Confidence 9999854 334555 5788999999999999999999999754 457789999999999999753 2
Q ss_pred ccCCCCCCeEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCH
Q 012545 365 VTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTP 428 (461)
Q Consensus 365 ~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~ 428 (461)
...+..+|+.++..++++.+ |.++ |..+. +.+...+ ...++|.|+++ ++++|||+|++|+++
T Consensus 340 ~~~~~~~p~~~~~~p~ia~v--Glte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a 417 (471)
T PRK06467 340 YFDPKVIPSIAYTEPEVAWV--GLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNA 417 (471)
T ss_pred CCCCCCCCeEEECCCceeEE--ECCHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 25566788877655555444 6554 22121 1111111 23567888888 479999999999999
Q ss_pred HH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 429 EE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 429 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.+ ++.++.+|+.++|++|+..+.-+.++|.+
T Consensus 418 ~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e 449 (471)
T PRK06467 418 GELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 449 (471)
T ss_pred HHHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence 88 68999999999999998888777777653
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=367.52 Aligned_cols=363 Identities=21% Similarity=0.329 Sum_probs=283.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHc
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
+|+||||||+||+++|..|++.+ ++.+|+||++++..+|.+|.++..+........+. .....++++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~ 71 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVFSQGQRADDLT----------RQSAGEFAEQF 71 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhh----------cCCHHHHHHhC
Confidence 58999999999999999999875 46789999999988898887654333211111110 11345677889
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCC
Q 012545 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGAD 165 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 165 (461)
+++++.+++|+.++++.+.+.+ ++.++.||+||+|||+.|..|+ ++|.+
T Consensus 72 gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~------------------------------i~G~~ 120 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPP------------------------------IPGRE 120 (377)
T ss_pred CCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCC------------------------------CCCCc
Confidence 9999999899999998888876 5567999999999999995443 34433
Q ss_pred CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhc
Q 012545 166 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 245 (461)
Q Consensus 166 ~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (461)
. +++++++.++..+.+.+. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.
T Consensus 121 ~--v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~ 196 (377)
T PRK04965 121 L--MLTLNSQQEYRAAETQLR--DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEM 196 (377)
T ss_pred e--EEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhC
Confidence 2 788888888888877665 478999999999999999999999999999999999888767899999999999999
Q ss_pred CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEeCc
Q 012545 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGD 324 (461)
Q Consensus 246 GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD 324 (461)
||+++++++++++..+ +....+.+.+|+++++|.||+|+|.+|+.++++. ++..++ +|.||++|||+.|+|||+||
T Consensus 197 gV~i~~~~~v~~i~~~--~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD 273 (377)
T PRK04965 197 GVHLLLKSQLQGLEKT--DSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGD 273 (377)
T ss_pred CCEEEECCeEEEEEcc--CCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeee
Confidence 9999999999999863 2234678899999999999999999999988754 455554 59999999999999999999
Q ss_pred ccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCe-EEEecCCcceEEccCCCCcEEEecCCcccc
Q 012545 325 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY-FYSRAFDLSWQFYGDNVGDTVLFGDNDLAS 403 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 403 (461)
|+..... ..+.+..|..||+.+|+||.+.. ..|...+. ...+.+++.+..+|...++...+...+ .
T Consensus 274 ~a~~~~~------~~~~~~~a~~~g~~~a~n~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~ 340 (377)
T PRK04965 274 CAEINGQ------VLPFLQPIQLSAMALAKNLLGQN-----TPLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINA--E 340 (377)
T ss_pred cEeECCc------eeehHHHHHHHHHHHHHHhcCCC-----cccccCCccEEEecCceeeEECCCCCCCCceEEEEe--C
Confidence 9986532 12567789999999999999864 23443332 334567888888887654221111001 1
Q ss_pred CCCcEEEEEEeCCEEEEEEEecCCHHH
Q 012545 404 ATHKFGTYWIKDGKVVGVFLESGTPEE 430 (461)
Q Consensus 404 ~~~~~~~~~~~~~~i~G~~~~g~~~~~ 430 (461)
....|.++++++|+|+|+.++|+....
T Consensus 341 ~~~~~~~~~~~~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 341 SQGMVAKGVDEAGQLRAFVVSEDRMKE 367 (377)
T ss_pred CCCeEEEEEccCCcEEEEEEEChhHHH
Confidence 134577888899999999999976544
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=387.80 Aligned_cols=392 Identities=21% Similarity=0.237 Sum_probs=285.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC----------CC---CCCCCCcccccccCCCCC----CCCCCce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----------AV---APYERPALSKAYLFPEGT----ARLPGFH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~----------~~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (461)
.|||+|||+|+||+.||..++++|.+ |+|+|+. .. +.+..|.++|.++..... .....+.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 58999999999999999999999987 9999961 11 122234445554432211 0111111
Q ss_pred eecCC------------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccc
Q 012545 68 VCVGS------------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 68 ~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 129 (461)
..... .....+...+++.+++++.+ ++..++. +++.+ +|+++.||+||||||++|.+|
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 10000 00112334456679999997 6666654 45665 567799999999999999766
Q ss_pred ccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHH
Q 012545 130 SLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL 209 (461)
Q Consensus 130 ~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l 209 (461)
+|||++ .++ +.+++..+. ..+++++|||+|++|+|+|..|
T Consensus 232 ~IpG~~--------------------------------~v~---~~~~~l~~~-----~~~k~V~VIGgG~iGvE~A~~L 271 (558)
T PLN02546 232 DIPGIE--------------------------------HAI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIF 271 (558)
T ss_pred CCCChh--------------------------------hcc---CHHHHHhcc-----ccCCeEEEECCCHHHHHHHHHH
Confidence 665542 111 222222221 1478999999999999999999
Q ss_pred HHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 210 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 210 ~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
...|.+|+++++.+.+++. +++++.+.+.+.|+++||++++++.+.++..++++. ..+.+.+++...+|.|++++|++
T Consensus 272 ~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~-v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 272 NGLKSDVHVFIRQKKVLRG-FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGS-LSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred HhcCCeEEEEEeccccccc-cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCE-EEEEECCeEEEecCEEEEeeccc
Confidence 9999999999999998886 899999999999999999999999999998643443 34666666555689999999999
Q ss_pred CChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcc
Q 012545 290 PLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV 365 (461)
Q Consensus 290 p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 365 (461)
||++++ ..++.. ++|+|.||+++||++|+|||+|||++.+ ..+..|..||+.+|.||++... ..
T Consensus 350 Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~--~~ 417 (558)
T PLN02546 350 PNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEP--TK 417 (558)
T ss_pred cCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCC--Cc
Confidence 999853 345666 5688999999999999999999999764 4577899999999999997532 12
Q ss_pred cCCCCCCeEEEecCCcceEEccCCC------CcEEE--ecCCccc------cCCCcEEEEEE--eCCEEEEEEEecCCHH
Q 012545 366 TGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL--FGDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPE 429 (461)
Q Consensus 366 ~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~--~~~~~~~------~~~~~~~~~~~--~~~~i~G~~~~g~~~~ 429 (461)
..|..+|+.+++.++++.+ |.++ |..+. .....+. ...++|+|+++ ++++|||+|++|+++.
T Consensus 418 ~~~~~vp~~vft~Peia~V--Glte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~ 495 (558)
T PLN02546 418 PDYRAVPSAVFSQPPIGQV--GLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAP 495 (558)
T ss_pred CCCCCCCEEEeCCchHhhc--cCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHH
Confidence 4677899888877776666 5443 11111 1111110 13467888887 5899999999999998
Q ss_pred H-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 430 E-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 430 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+ ++.++.+|++++|++|+..+.-+.+++++
T Consensus 496 elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E 526 (558)
T PLN02546 496 EIIQGFAVAVKAGLTKADFDATVGIHPTAAE 526 (558)
T ss_pred HHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence 8 69999999999999998887777777654
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=382.55 Aligned_cols=397 Identities=18% Similarity=0.211 Sum_probs=285.9
Q ss_pred CCC-CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--CCCC-CcccccccCCCC----CC------CCC--
Q 012545 1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--PYER-PALSKAYLFPEG----TA------RLP-- 64 (461)
Q Consensus 1 Mm~-~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--~~~~-~~~~~~~~~~~~----~~------~~~-- 64 (461)
||+ +.|||+|||||+||++||..|++.|.+ |+|||++... +.++ |.+++.++.... .. .++
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 554 579999999999999999999999987 9999997532 1222 223443321110 00 000
Q ss_pred --CceeecCC----C----CCC-CCHhHHHH-cCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCccccc
Q 012545 65 --GFHVCVGS----G----GER-LLPEWYKE-KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSITS 130 (461)
Q Consensus 65 --~~~~~~~~----~----~~~-~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~ 130 (461)
.+.+..-. . ... .....++. .+++++.+ ++..++.....|.+.++ .+++||+||||||++|..|+
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 00000000 0 000 01222333 38999998 78888888778887776 36999999999999997666
Q ss_pred cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHH
Q 012545 131 LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 210 (461)
Q Consensus 131 ~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~ 210 (461)
+||+.+ ..+++. .+...+. . .+++++|||+|++|+|+|..|+
T Consensus 157 i~G~~~------------------------------~~~~~~---~~~~~l~----~-~~~~vvViG~G~~G~E~A~~l~ 198 (468)
T PRK14694 157 VPGLAE------------------------------TPYLTS---TSALELD----H-IPERLLVIGASVVALELAQAFA 198 (468)
T ss_pred CCCCCC------------------------------CceEcc---hhhhchh----c-CCCeEEEECCCHHHHHHHHHHH
Confidence 666431 122222 1222221 1 3789999999999999999999
Q ss_pred HCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 211 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 211 ~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+.|.+|+++++ +++++. +++++.+.+.+.|++.||++++++++++++.+ +....+.+.++ ++++|.|++|+|++|
T Consensus 199 ~~g~~Vtlv~~-~~~l~~-~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~--~~~~~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 199 RLGSRVTVLAR-SRVLSQ-EDPAVGEAIEAAFRREGIEVLKQTQASEVDYN--GREFILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred HcCCeEEEEEC-CCCCCC-CCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEEECCC-EEEeCEEEEccCCCC
Confidence 99999999987 466665 79999999999999999999999999999862 33334555554 799999999999999
Q ss_pred Chhhh---hcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccC
Q 012545 291 LISLF---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 367 (461)
Q Consensus 291 ~~~~~---~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 367 (461)
|++++ ..++..++|+|.||+++||++|+|||+|||++.+ ..+..|..||+.||.||++... ...
T Consensus 274 n~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~---~~~ 340 (468)
T PRK14694 274 NTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA---SLD 340 (468)
T ss_pred CcCCCCchhcCcccCCCeEeeCCCcccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccc
Confidence 99865 2345556788999999999999999999999865 3567788999999999986532 255
Q ss_pred CCCCCeEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE- 430 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~- 430 (461)
+..+|.+.++.++++.+ |.++ |..+ .+...... ..+++|.|+++ ++++|||+|++|+++.+
T Consensus 341 ~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~ 418 (468)
T PRK14694 341 LSAMPEVIFTDPQVATV--GLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGEL 418 (468)
T ss_pred cCCCCeEEECCCCeEEe--eCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHH
Confidence 66788887766655555 6554 2211 12211111 23567899887 58999999999998888
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 431 NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.++.+|+.++|++||..+.-+.+++++
T Consensus 419 i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (468)
T PRK14694 419 IQTAVMALRARMTVNEIADELFPYLTMVE 447 (468)
T ss_pred HHHHHHHHHCCCCHHHHhccccCCCchHH
Confidence 68999999999999998888777777764
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=382.71 Aligned_cols=396 Identities=18% Similarity=0.229 Sum_probs=281.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCC-CcccccccCCCCCCCCCCceeecCC------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YER-PALSKAYLFPEGTARLPGFHVCVGS------ 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------ 72 (461)
+.|||+|||||+||++||..|+++|.+ |+|||+++... ..+ |..++.++.... ....+......
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~~GG~~~~~gcip~k~l~~~~~--~~~~~~~~~~~~~~~~~ 76 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAMYGGTCINIGCIPTKTLVHDAQ--QHTDFVRAIQRKNEVVN 76 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCccceeEeeccccchHHHHHHhc--cCCCHHHHHHHHHHHHH
Confidence 479999999999999999999999987 99999975311 111 222232222211 00011000000
Q ss_pred CCCC-CCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc-EEecCEEEEccCCCccccccccccccCccccccccCCcc
Q 012545 73 GGER-LLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPL 150 (461)
Q Consensus 73 ~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~ 150 (461)
.... ...++.+..+++++.+ ++..++.....|...++. ++.||+||+|||++|.+|.+||+.+
T Consensus 77 ~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~-------------- 141 (441)
T PRK08010 77 FLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITT-------------- 141 (441)
T ss_pred HHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccC--------------
Confidence 0000 0112223348999887 677777655556666664 6999999999999997666666421
Q ss_pred cccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCccc
Q 012545 151 FQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 230 (461)
Q Consensus 151 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~ 230 (461)
.+++++...+. .+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +
T Consensus 142 ---------------~~~v~~~~~~~---~~----~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~ 197 (441)
T PRK08010 142 ---------------TPGVYDSTGLL---NL----K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-E 197 (441)
T ss_pred ---------------CCCEEChhHhh---cc----c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-c
Confidence 22344332222 11 1 14789999999999999999999999999999999999887 6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh---hccccc-CCCcE
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGI 306 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~---~~~~~~-~~g~i 306 (461)
++++.+.+.+.|++.||++++++++++++.+ ++. ..+.++++ ++++|.|++|+|++||++++ ..++.. ++|+|
T Consensus 198 ~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~-v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i 274 (441)
T PRK08010 198 DRDIADNIATILRDQGVDIILNAHVERISHH-ENQ-VQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAI 274 (441)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcE
Confidence 9999999999999999999999999999863 332 34555555 69999999999999999754 344555 56899
Q ss_pred EeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEc
Q 012545 307 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFY 386 (461)
Q Consensus 307 ~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 386 (461)
.||+++||++|+|||+|||++.+ .....|..+|+.++.||++... .....+..+|+..++.++++.+
T Consensus 275 ~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~a~~~~~~~~~~~~g~~~-~~~~~~~~~p~~~~~~p~ia~v-- 341 (441)
T PRK08010 275 VVDKYLHTTADNIWAMGDVTGGL----------QFTYISLDDYRIVRDELLGEGK-RSTDDRKNVPYSVFMTPPLSRV-- 341 (441)
T ss_pred EECCCcccCCCCEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCC-cccCccCCCCEEEECCCCceee--
Confidence 99999999999999999999876 3456688899999999986421 1124556788877666666555
Q ss_pred cCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhh
Q 012545 387 GDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDV 449 (461)
Q Consensus 387 g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~ 449 (461)
|.++ |..+. +.+.... ..+.+|.|+++ ++|+|||+|++|+++.+ ++.++.+|++++|++++..
T Consensus 342 Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~ 421 (441)
T PRK08010 342 GMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRD 421 (441)
T ss_pred eCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence 6554 22111 1222221 23456888887 58999999999999888 6999999999999999887
Q ss_pred hhccCCCccc
Q 012545 450 LKNEGLSFAS 459 (461)
Q Consensus 450 l~~~~~~~~~ 459 (461)
..-+.+++++
T Consensus 422 ~~~~hPt~~e 431 (441)
T PRK08010 422 QIFTHPSMSE 431 (441)
T ss_pred ccccCCchHH
Confidence 6666666654
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=381.68 Aligned_cols=395 Identities=21% Similarity=0.257 Sum_probs=288.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC----CCCCCceeecC------C
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVG------S 72 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~ 72 (461)
+|++|||+|++|+.||..++++|.+ |+|+|++.... ...|.++|.++..... .....+..... .
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 4899999999999999999999987 99999976421 2234445554422100 00000000000 0
Q ss_pred --------------CCCCCCHhHHHHcCcEEEcCCeEEEEe--CCCCE--EEcCCCc--EEecCEEEEccCCCccccccc
Q 012545 73 --------------GGERLLPEWYKEKGIELILSTEIVRAD--IASKT--LLSATGL--IFKYQILVIATGSTVSITSLT 132 (461)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~~--v~~~~~~--~~~~d~liiAtG~~~~~~~~~ 132 (461)
.......+.+++++++++.+ ++..++ .+.++ |...+|+ ++.||+||+|||++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~----- 152 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR----- 152 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC-----
Confidence 00112335566789999998 555533 33444 4445564 6999999999999993
Q ss_pred cccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC
Q 012545 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 212 (461)
Q Consensus 133 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~ 212 (461)
.+| .++.+...++++.++.+... .+++++|||+|++|+|+|..|++.
T Consensus 153 ----------------------~~p---~~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~ 199 (466)
T PRK07845 153 ----------------------ILP---TAEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTEL 199 (466)
T ss_pred ----------------------CCC---CCCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHc
Confidence 222 22223345666554443322 368999999999999999999999
Q ss_pred CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 213 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
|.+|+++++.+++++. +++++.+.+.+.|+++||++++++++++++.++++ ..+.+.+|+++++|.|++++|++||+
T Consensus 200 g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 200 GVKVTLVSSRDRVLPG-EDADAAEVLEEVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred CCeEEEEEcCCcCCCC-CCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCC
Confidence 9999999999999987 79999999999999999999999999999763333 35777889999999999999999999
Q ss_pred hhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCC
Q 012545 293 SLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGY 368 (461)
Q Consensus 293 ~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 368 (461)
+.+ +.++.. ++|+|.||+++||+.|+|||+|||++.+ +.+..|..||+.|+.|+++... ....+
T Consensus 277 ~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~ 344 (466)
T PRK07845 277 AGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAV--SPLRL 344 (466)
T ss_pred CCCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCC--CcCCC
Confidence 853 445665 5688999999999999999999999764 5688899999999999996431 12456
Q ss_pred CCCCeEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-H
Q 012545 369 DYLPYFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-N 431 (461)
Q Consensus 369 ~~~p~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~ 431 (461)
..+|..+++.++++.+ |.++ |..+ .+.+...+ ..+++|.|+++ ++|+|||+|++|+++.+ +
T Consensus 345 ~~~p~~vf~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i 422 (466)
T PRK07845 345 KTVASNVFTRPEIATV--GVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELI 422 (466)
T ss_pred CCCCEEEeCCCcceee--cCCHHHHHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHH
Confidence 7788877776766655 5443 2111 12221111 23567898887 57999999999999988 6
Q ss_pred HHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 432 KAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.++.+|++++|++||..+.-+.++|.+
T Consensus 423 ~~~~~ai~~~~t~~~l~~~~~~hPt~~e 450 (466)
T PRK07845 423 LPIALAVQNRLTVDDLAQTFTVYPSLSG 450 (466)
T ss_pred HHHHHHHHcCCCHHHHhcCcCCCCCHHH
Confidence 8999999999999998877767777654
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=380.76 Aligned_cols=403 Identities=18% Similarity=0.204 Sum_probs=285.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCCCCC------CCceeecCC--
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGTARL------PGFHVCVGS-- 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-- 72 (461)
..||++|||||+||++||..+++.|.+ |+|||++... ....|.++|.++........ .++......
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 368999999999999999999999987 9999997432 12334455655543321110 011100000
Q ss_pred ------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEE----------------------------cCCCcE
Q 012545 73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLL----------------------------SATGLI 112 (461)
Q Consensus 73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~----------------------------~~~~~~ 112 (461)
.......+.+++.||+++.+.... . +.++|. ..++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f-~--~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSL-L--SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEE-e--cCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 001122344566899999985321 1 222221 245678
Q ss_pred EecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCc
Q 012545 113 FKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 192 (461)
Q Consensus 113 ~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~ 192 (461)
++||++|||||++|.+|++|| .+ .+++ .++...+ . .+++
T Consensus 201 i~ad~lVIATGS~P~~P~IpG------------------------------~~--~v~t---s~~~~~l----~--~pk~ 239 (561)
T PTZ00058 201 IEGKNILIAVGNKPIFPDVKG------------------------------KE--FTIS---SDDFFKI----K--EAKR 239 (561)
T ss_pred EECCEEEEecCCCCCCCCCCC------------------------------ce--eEEE---HHHHhhc----c--CCCE
Confidence 999999999999996554444 21 1222 2232222 1 3789
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC
Q 012545 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 272 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~ 272 (461)
++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.|++.||++++++.+.+++.++++.+ .+.+.
T Consensus 240 VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~ 317 (561)
T PTZ00058 240 IGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLS 317 (561)
T ss_pred EEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEEC
Confidence 999999999999999999999999999999998876 7999999999999999999999999999986333333 34443
Q ss_pred C-CcEEecCEEEEccCCCCChhhhhc---ccccCCCcEEeCCCCCCCCCCEEEeCcccccCcc-----------------
Q 012545 273 D-GRTLEADIVVVGVGGRPLISLFKG---QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK----------------- 331 (461)
Q Consensus 273 ~-G~~i~aD~vi~a~G~~p~~~~~~~---~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----------------- 331 (461)
+ ++++++|.|++|+|++||++.+.. ++..++|+|.||+++||++|+|||+|||++.+..
T Consensus 318 ~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~ 397 (561)
T PTZ00058 318 DGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPY 397 (561)
T ss_pred CCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccc
Confidence 4 457999999999999999987742 2233678999999999999999999999984321
Q ss_pred ------ccCcce-eeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC-------Cc-EEEe
Q 012545 332 ------LYREMR-RVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GD-TVLF 396 (461)
Q Consensus 332 ------~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~-~~~~ 396 (461)
..+... ..+....|.+||++||.||++.... ...|..+|+.+++.++++.+ |.++ |. .+..
T Consensus 398 ~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~--~~~~~~ip~~vft~peiA~v--Glte~eA~~~~g~~~~~~ 473 (561)
T PTZ00058 398 LKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSR--TTNYKLIPSVIFSHPPIGTI--GLSEQEAIDIYGKENVKI 473 (561)
T ss_pred cccccccccccccCcCchHHHHHHHHHHHHHHhCCCCc--ccCCCCCCeEEeCCchheee--eCCHHHHHHhcCCCcEEE
Confidence 122222 3577889999999999999975321 24567789887777776666 5443 21 1211
Q ss_pred c--CCc----------cccCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 397 G--DND----------LASATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 397 ~--~~~----------~~~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
. ... +....++|.|+++ ++|+|||+|++|+++.+ ++.++.+|+++++++|+..+.-+.+++++
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e 551 (561)
T PTZ00058 474 YESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAE 551 (561)
T ss_pred EEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHH
Confidence 1 111 1112457888877 58999999999999988 68999999999999998887777777764
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=381.26 Aligned_cols=396 Identities=26% Similarity=0.335 Sum_probs=282.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCCC----CCCCceeecCC----
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGTA----RLPGFHVCVGS---- 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---- 72 (461)
..|||+||||||||++||..|+++|++ |+|+|++.... +..|.+++.++...... ....+......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 479999999999999999999999987 99999986321 22233344433221110 00000000000
Q ss_pred -------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC-CcEEecCEEEEccCCCccccccccccccC
Q 012545 73 -------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-GLIFKYQILVIATGSTVSITSLTSIRSKH 138 (461)
Q Consensus 73 -------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~~d~liiAtG~~~~~~~~~g~~~~~ 138 (461)
.........+++.+++++.+ ++..++.....+...+ ++++.||+||+|||++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~----------- 147 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPR----------- 147 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCC-----------
Confidence 00011233455689999998 5666655444444322 367999999999999993
Q ss_pred ccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEE
Q 012545 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSM 218 (461)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtl 218 (461)
.+|. ++ .....+++. +++..+. . .+++++|||+|++|+|+|..|++.|.+|++
T Consensus 148 ----------------~~pg--~~-~~~~~v~~~---~~~~~~~----~-~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl 200 (462)
T PRK06416 148 ----------------ELPG--IE-IDGRVIWTS---DEALNLD----E-VPKSLVVIGGGYIGVEFASAYASLGAEVTI 200 (462)
T ss_pred ----------------CCCC--CC-CCCCeEEcc---hHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 2221 11 111224333 3333321 1 468999999999999999999999999999
Q ss_pred EccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC---cEEecCEEEEccCCCCChhhh
Q 012545 219 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G---~~i~aD~vi~a~G~~p~~~~~ 295 (461)
+++.+++++. +++++.+.+.+.|++.||+++++++|++++.+++ ...+.+.+| +++++|.||+|+|++|+++++
T Consensus 201 i~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l 277 (462)
T PRK06416 201 VEALPRILPG-EDKEISKLAERALKKRGIKIKTGAKAKKVEQTDD--GVTVTLEDGGKEETLEADYVLVAVGRRPNTENL 277 (462)
T ss_pred EEcCCCcCCc-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCC
Confidence 9999999887 7999999999999999999999999999987332 235666665 679999999999999999865
Q ss_pred ---hcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 ---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 ---~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++..++|+|.||+++||+.|+|||+|||+..+ +.+..|..||+.||.||++.. ...++..+|
T Consensus 278 ~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~---~~~~~~~~~ 344 (462)
T PRK06416 278 GLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNP---HPIDYRGIP 344 (462)
T ss_pred CchhcCCeecCCEEeECCCCccCCCCEEEeeecCCCc----------chHHHHHHHHHHHHHHHcCCC---CCCCCCCCC
Confidence 3445556788999999999999999999999754 467889999999999999743 123355677
Q ss_pred eEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHH
Q 012545 373 YFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIA 435 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~ 435 (461)
.+....++ +..+|.++ |..+. +...... ...++|.|+++ ++++|||+|++|+++.+ ++.++
T Consensus 345 ~~~~~~~~--~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~ 422 (462)
T PRK06416 345 AVTYTHPE--VASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQ 422 (462)
T ss_pred eEEECCCc--eEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH
Confidence 76554444 45556654 22111 1111111 23567888877 58999999999999888 68999
Q ss_pred HHHHcCCCCCChhhhhccCCCccc
Q 012545 436 KVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.+|+.++|++||..+.-+.+++++
T Consensus 423 ~ai~~~~t~~~l~~~~~~hPt~~e 446 (462)
T PRK06416 423 LAINWEATPEDLALTIHPHPTLSE 446 (462)
T ss_pred HHHHCCCCHHHHhhCccCCCCHHH
Confidence 999999999998888777777654
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=377.27 Aligned_cols=392 Identities=18% Similarity=0.235 Sum_probs=281.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCC----CCCCCceeecC------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVG------ 71 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------ 71 (461)
.||++||||||+|..||.. ..|.+ |+|||++... .+..|.++|.++..... ...+.+.....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 4899999999999988865 35776 9999997542 23334455544422211 00000000000
Q ss_pred -----------CCCCC-CCHhH-HHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccC
Q 012545 72 -----------SGGER-LLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKH 138 (461)
Q Consensus 72 -----------~~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~ 138 (461)
..... ....+ ++..+++++.+. ...+ +.++|.+.+++++.||++|||||++|.+|++||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~---- 148 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GPKTLRTGDGEEITADQVVIAAGSRPVIPPVIAD---- 148 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCc----
Confidence 00011 12233 667899999984 4333 5788888878789999999999999965554442
Q ss_pred ccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEE
Q 012545 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSM 218 (461)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtl 218 (461)
+...++ +.+++..+.. .+++++|||+|++|+|+|..|++.|.+|++
T Consensus 149 --------------------------~~~~~~---~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 194 (451)
T PRK07846 149 --------------------------SGVRYH---TSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTV 194 (451)
T ss_pred --------------------------CCccEE---chHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 222232 3334433321 378999999999999999999999999999
Q ss_pred EccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh---
Q 012545 219 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF--- 295 (461)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~--- 295 (461)
+++.+++++. +++++.+.+.+.+ +.||++++++++++++.+ ++ ...+.+.+|+++++|.|++|+|++||++++
T Consensus 195 i~~~~~ll~~-~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~-~~-~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~ 270 (451)
T PRK07846 195 VNRSGRLLRH-LDDDISERFTELA-SKRWDVRLGRNVVGVSQD-GS-GVTLRLDDGSTVEADVLLVATGRVPNGDLLDAA 270 (451)
T ss_pred EEcCCccccc-cCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc-CC-EEEEEECCCcEeecCEEEEEECCccCccccCch
Confidence 9999999876 7999998887655 568999999999999863 22 245777888899999999999999999875
Q ss_pred hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeE
Q 012545 296 KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYF 374 (461)
Q Consensus 296 ~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~ 374 (461)
..++.. ++|+|.||+++||++|+|||+|||++.+ +....|.+||+++++||++.... ....+..+|+.
T Consensus 271 ~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~ 339 (451)
T PRK07846 271 AAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY----------QLKHVANHEARVVQHNLLHPDDL-IASDHRFVPAA 339 (451)
T ss_pred hcCceECCCCcEeECCCcccCCCCEEEEeecCCCc----------cChhHHHHHHHHHHHHHcCCCCc-cccCCCCCCeE
Confidence 334665 5788999999999999999999999865 34567889999999999865211 12466778998
Q ss_pred EEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHH
Q 012545 375 YSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKV 437 (461)
Q Consensus 375 ~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~ 437 (461)
+++.++++.+ |.++ |..+. +.+.... ...++|.|+++ ++++|||+|++|+++.+ ++.++.+
T Consensus 340 if~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~a 417 (451)
T PRK07846 340 VFTHPQIASV--GLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQA 417 (451)
T ss_pred EECCCCcEeE--eCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
Confidence 8876766655 5544 22221 1221111 23567888887 57999999999999888 6899999
Q ss_pred HHcCCCCCChhhhh-ccCCCccc
Q 012545 438 ARVQPSVESLDVLK-NEGLSFAS 459 (461)
Q Consensus 438 ~~~~~~~~~~~~l~-~~~~~~~~ 459 (461)
|++++|++||..+. -+.++|.+
T Consensus 418 i~~~~t~~~l~~~~~~~hPt~~e 440 (451)
T PRK07846 418 MSFGLDAREMARGQYWIHPALPE 440 (451)
T ss_pred HHcCCCHHHHhhCCCccCCcHHH
Confidence 99999999987653 46666654
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=380.67 Aligned_cols=395 Identities=20% Similarity=0.249 Sum_probs=283.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCC---------CC---CCCCCCcccccccCCCCC----CCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE---------AV---APYERPALSKAYLFPEGT----ARLPG 65 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~---------~~---~~~~~~~~~~~~~~~~~~----~~~~~ 65 (461)
++.||++|||||++|..||..++++ |.+ |+|||++ .. +....|.++|.++..... .+...
T Consensus 1 ~~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~ 77 (486)
T TIGR01423 1 SKAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAG 77 (486)
T ss_pred CCccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999997 777 9999973 11 112234455555533311 01111
Q ss_pred ceeecC--C---C--------------CCCCCHhHHHH-cCcEEEcCCeEEEEeCCCCEEEcCC--------CcEEecCE
Q 012545 66 FHVCVG--S---G--------------GERLLPEWYKE-KGIELILSTEIVRADIASKTLLSAT--------GLIFKYQI 117 (461)
Q Consensus 66 ~~~~~~--~---~--------------~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------~~~~~~d~ 117 (461)
+..... . + ......++++. .+++++.+. ..- .+.++|.+.+ .+++.||+
T Consensus 78 ~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a~f--~~~~~v~V~~~~~~~~~~~~~~~~d~ 154 (486)
T TIGR01423 78 FGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-GAL--EDKNVVLVRESADPKSAVKERLQAEH 154 (486)
T ss_pred cCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-EEE--ccCCEEEEeeccCCCCCcceEEECCE
Confidence 110000 0 0 00112233444 489999984 332 3456665531 24799999
Q ss_pred EEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEEC
Q 012545 118 LVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVG 197 (461)
Q Consensus 118 liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG 197 (461)
||||||++|..|++||++ .++ +.+++..+ . ..+++++|||
T Consensus 155 lIIATGs~p~~p~i~G~~--------------------------------~~~---~~~~~~~~----~-~~~~~vvIIG 194 (486)
T TIGR01423 155 ILLATGSWPQMLGIPGIE--------------------------------HCI---SSNEAFYL----D-EPPRRVLTVG 194 (486)
T ss_pred EEEecCCCCCCCCCCChh--------------------------------hee---chhhhhcc----c-cCCCeEEEEC
Confidence 999999999666555532 122 12222221 1 1478999999
Q ss_pred CCHHHHHHHHHHHHC---CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC
Q 012545 198 GGYIGLELSAALKIN---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 274 (461)
Q Consensus 198 ~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G 274 (461)
+|++|+|+|..+..+ |.+|+++++.+++++. +++++.+.+.+.|++.||++++++.++++..++++ ...+++.+|
T Consensus 195 gG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g 272 (486)
T TIGR01423 195 GGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESG 272 (486)
T ss_pred CCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCC
Confidence 999999999877665 9999999999999986 89999999999999999999999999999863333 346777788
Q ss_pred cEEecCEEEEccCCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHH
Q 012545 275 RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 350 (461)
Q Consensus 275 ~~i~aD~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 350 (461)
+++++|.|++|+|++||++++ ..++.. ++|+|.||+++||++|||||+|||++.+ .....|..||+
T Consensus 273 ~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~ 342 (486)
T TIGR01423 273 KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGA 342 (486)
T ss_pred CEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHH
Confidence 899999999999999999865 245655 5788999999999999999999999765 35677899999
Q ss_pred HHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC------cEEEe-----cCCccc--cC--CCcEEEEEE--
Q 012545 351 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVLF-----GDNDLA--SA--THKFGTYWI-- 413 (461)
Q Consensus 351 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~~-----~~~~~~--~~--~~~~~~~~~-- 413 (461)
.|++||++... ....+..+|+.+++.++++.+ |.++. ..+.. ...... .. .++|.|+++
T Consensus 343 ~aa~ni~g~~~--~~~~~~~vp~~vft~peia~v--Glte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~ 418 (486)
T TIGR01423 343 AFVDTVFGNKP--RKTDHTRVASAVFSIPPIGTC--GLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNH 418 (486)
T ss_pred HHHHHHhCCCC--cccCCCCCCEEEeCCCceEEe--eCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEEC
Confidence 99999986431 124566789988888876655 55441 11111 111000 11 246888877
Q ss_pred eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 414 KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 414 ~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++++|||+|++|+++.+ ++.++.+|+.++|++|+..+.-+.+++++
T Consensus 419 ~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE 465 (486)
T TIGR01423 419 ADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAE 465 (486)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHH
Confidence 57999999999999888 68999999999999998888878887765
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=380.52 Aligned_cols=401 Identities=24% Similarity=0.285 Sum_probs=282.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC----CCCCCceeecC---
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVG--- 71 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 71 (461)
|.+.|||+||||||||++||..|+++|.+ |+|+|++.... ...|.++|.++..... .....+.....
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 55689999999999999999999999987 99999974321 2223334443322100 00000000000
Q ss_pred CC--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCC-------CCEEEcCCC--cEEecCEEEEccCCCccc
Q 012545 72 SG--------------GERLLPEWYKEKGIELILSTEIVRADIA-------SKTLLSATG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 72 ~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~~--~~~~~d~liiAtG~~~~~ 128 (461)
.+ ......+++++.+++++.+ .+..++.. ...|.+.+| +++.||+||||||++|.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~- 155 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV- 155 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC-
Confidence 00 0011224456679999998 77777766 345665666 47999999999999983
Q ss_pred cccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHH
Q 012545 129 TSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAA 208 (461)
Q Consensus 129 ~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~ 208 (461)
.+|. ++ .+...+++. .++..+. . .+++++|||+|++|+|+|..
T Consensus 156 --------------------------~~p~--~~-~~~~~~~~~---~~~~~~~----~-~~~~vvIIGgG~~G~E~A~~ 198 (472)
T PRK05976 156 --------------------------ELPG--LP-FDGEYVISS---DEALSLE----T-LPKSLVIVGGGVIGLEWASM 198 (472)
T ss_pred --------------------------CCCC--CC-CCCceEEcc---hHhhCcc----c-cCCEEEEECCCHHHHHHHHH
Confidence 2221 11 111223322 3333221 1 36899999999999999999
Q ss_pred HHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEcc
Q 012545 209 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGV 286 (461)
Q Consensus 209 l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~ 286 (461)
|++.|.+|+++++.+++++. +++++.+.+.+.|++.||++++++++++++...++.+..+.+.+| +++++|.+++|+
T Consensus 199 l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 199 LADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred HHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 99999999999999999887 799999999999999999999999999997421333444555666 369999999999
Q ss_pred CCCCChhhhh---cccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCC
Q 012545 287 GGRPLISLFK---GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363 (461)
Q Consensus 287 G~~p~~~~~~---~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 363 (461)
|++|+++.+. .++..++|+|.||+++||+.|+|||+|||++.+ +.+..|..+|+.||.||.+...
T Consensus 278 G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-- 345 (472)
T PRK05976 278 GRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKP-- 345 (472)
T ss_pred CCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC--
Confidence 9999987542 233336789999999999999999999999754 4677899999999999986431
Q ss_pred cccCCCCCCeEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCC
Q 012545 364 TVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGT 427 (461)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~ 427 (461)
....+..+|...+..++ +..+|.++ |..+. +.....+ ...++|.|+++ ++++|||+|++|++
T Consensus 346 ~~~~~~~~p~~~~~~p~--~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 423 (472)
T PRK05976 346 RPFDYAAIPACCYTDPE--VASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPH 423 (472)
T ss_pred CCCCCCCCCEEEECcCc--eEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 12344556766654454 44446554 22221 1211111 23567888887 57999999999999
Q ss_pred HHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 428 PEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 428 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.+ ++.++.+|+.++|++||..+..+.+++.+
T Consensus 424 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 456 (472)
T PRK05976 424 VTELISEFALALELGARLWEVAGTIHPHPTLSE 456 (472)
T ss_pred HHHHHHHHHHHHHCCCCHHHHhhCcccCCChHH
Confidence 988 68999999999999998888777777764
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=376.94 Aligned_cols=396 Identities=22% Similarity=0.264 Sum_probs=277.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCcccccccCCCCCC------CCCCceee--cCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEGTA------RLPGFHVC--VGS 72 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~ 72 (461)
.|||+||||||||++||..++++|.+ |+|||+.... ....|.++|.++...... ....+... ...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~ 79 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL 79 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence 59999999999999999999999987 9999974321 222344455444332110 01111000 000
Q ss_pred CCC--------------CCCHhHHHHcCcEEEcCCeEEEEeCCCC-EEEcCCCc--EEecCEEEEccCCCcccccccccc
Q 012545 73 GGE--------------RLLPEWYKEKGIELILSTEIVRADIASK-TLLSATGL--IFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 73 ~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
+.. .....+++..+++++.+. . .++.+.+ .+...+++ ++.||++|||||++|. .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~i---- 151 (466)
T PRK06115 80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PL---- 151 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CC----
Confidence 000 011233455689988873 3 3333222 23344553 6999999999999982 12
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
||....+...++ ..++..+ . ..+++++|||+|++|+|+|..|.+.|.+
T Consensus 152 --------------------------pg~~~~~~~~~~-~~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~ 199 (466)
T PRK06115 152 --------------------------PGVTIDNQRIID-STGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQ 199 (466)
T ss_pred --------------------------CCCCCCCCeEEC-HHHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 222222222222 2222221 1 1479999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe-C--CCcEEecCEEEEccCCCCCh
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-K--DGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~--~G~~i~aD~vi~a~G~~p~~ 292 (461)
|+++++.+++++. +++++.+.+.+.|++.||++++++++++++.++++....+.. . +++++++|.|++|+|++||+
T Consensus 200 Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 200 VTVVEYLDRICPG-TDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred EEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 9999999999987 799999999999999999999999999998633332222322 1 23579999999999999999
Q ss_pred hhhh---cccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC
Q 012545 293 SLFK---GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD 369 (461)
Q Consensus 293 ~~~~---~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 369 (461)
+.+. .++..+.+++.||+++||+.|+|||+|||++.+ .....|.+||++||+||++.. ....|.
T Consensus 279 ~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~---~~~~~~ 345 (466)
T PRK06115 279 QGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKA---GEVNYG 345 (466)
T ss_pred ccCCcccccceeCCCCEEECCCeecCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCC---CCCCCC
Confidence 8542 234444445889999999999999999999865 467889999999999998753 125677
Q ss_pred CCCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 370 YLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
.+|..+++.+++..+ |.++ |..+.. .....+ ...++|.|+++ ++++|||+|++|+++.+ ++
T Consensus 346 ~~p~~~~t~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~ 423 (466)
T PRK06115 346 LIPGVIYTRPEVATV--GKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIG 423 (466)
T ss_pred CCCeEEECCcccEEe--eCCHHHHHHCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHH
Confidence 899988887776666 5543 222211 222211 23567888887 57999999999999888 68
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 433 AIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.++.+|+.++|++||..+.-+.+++.+
T Consensus 424 ~~~~ai~~~~t~~dl~~~~~~hPt~~e 450 (466)
T PRK06115 424 EFCVAMEFSASAEDIALTCHPHPTRSE 450 (466)
T ss_pred HHHHHHHcCCCHHHHhhCccCCCChHH
Confidence 999999999999998887777777654
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=380.66 Aligned_cols=392 Identities=22% Similarity=0.257 Sum_probs=278.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC-CCcccccccCCCCCCCC---CCceeecC---C----
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE-RPALSKAYLFPEGTARL---PGFHVCVG---S---- 72 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~~~~~~~---~---- 72 (461)
|||+||||||||++||..|+++|.+ |+|||+++... .+ .|.++|.++......+. ..+..... .
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 7999999999999999999999987 99999975321 11 22233333321100000 00000000 0
Q ss_pred ------C----CC-CCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc-EEecCEEEEccCCCccccccccccccCcc
Q 012545 73 ------G----GE-RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVSITSLTSIRSKHCL 140 (461)
Q Consensus 73 ------~----~~-~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~liiAtG~~~~~~~~~g~~~~~~~ 140 (461)
+ .. .....++++.+++++.+ ++..+ +.++|.+.+++ .+.||++|||||++|.+|++||+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~----- 149 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLK----- 149 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcc-----
Confidence 0 00 11335567789999887 44433 46778776653 679999999999999766666643
Q ss_pred ccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 012545 141 CCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220 (461)
Q Consensus 141 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~ 220 (461)
..++++..++ ..+ . ..+++++|||+|++|+|+|..|++.|.+|++++
T Consensus 150 -------------------------~~~~~~~~~~---~~~----~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~ 196 (463)
T TIGR02053 150 -------------------------EAGYLTSEEA---LAL----D-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQ 196 (463)
T ss_pred -------------------------cCceECchhh---hCc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 2233333222 111 1 136899999999999999999999999999999
Q ss_pred cCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCcEEecCEEEEccCCCCChh-h-h
Q 012545 221 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGRTLEADIVVVGVGGRPLIS-L-F 295 (461)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~~i~aD~vi~a~G~~p~~~-~-~ 295 (461)
+.+++++. +++++.+.+.+.|++.||+++++++|++++.++++ ..+++. +++++++|.|++|+|++|+++ + +
T Consensus 197 ~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l 273 (463)
T TIGR02053 197 RSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGL 273 (463)
T ss_pred cCCcCCCc-cCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCc
Confidence 99999987 79999999999999999999999999999873222 334442 236899999999999999998 3 2
Q ss_pred -hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCe
Q 012545 296 -KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY 373 (461)
Q Consensus 296 -~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~ 373 (461)
..++.. ++|+|.||++|||+.|+|||+|||+..+ ..+..|..||+.||.||++... ...++..+|.
T Consensus 274 ~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~~~p~ 341 (463)
T TIGR02053 274 EKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGL----------QLEYVAAKEGVVAAENALGGAN--AKLDLLVIPR 341 (463)
T ss_pred cccCCEECCCCcEeECCCccCCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCC--CccCcCCCCe
Confidence 334555 5788999999999999999999999864 4678899999999999987521 1244566787
Q ss_pred EEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHH
Q 012545 374 FYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAK 436 (461)
Q Consensus 374 ~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~ 436 (461)
..+..+++..+ |.++ |..+. +...... ...++|.|+++ ++++|||+|++|+++.+ ++.++.
T Consensus 342 ~~~~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ 419 (463)
T TIGR02053 342 VVFTDPAVASV--GLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAAL 419 (463)
T ss_pred EEeccCceEEE--eCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHH
Confidence 66655555544 6543 22111 1121111 23567888887 47999999999999888 689999
Q ss_pred HHHcCCCCCChhhhhccCCCcc
Q 012545 437 VARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
+|+.++|++|+..+.-+.+++.
T Consensus 420 ai~~~~t~~~l~~~~~~~pt~~ 441 (463)
T TIGR02053 420 AIRAGMTVDDLIDTLHPFPTMA 441 (463)
T ss_pred HHHCCCCHHHHhhCcccCCChH
Confidence 9999999998887765555543
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=378.38 Aligned_cols=396 Identities=24% Similarity=0.277 Sum_probs=274.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC-CCcccccccCCCCCC-----CCCCceeecCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE-RPALSKAYLFPEGTA-----RLPGFHVCVGS 72 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 72 (461)
|| +.|||+||||||||++||..|++.|.+ |+|||++.... .. .|.++|.++...... ....+......
T Consensus 1 ~~-~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~ 76 (466)
T PRK07818 1 MM-THYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEV 76 (466)
T ss_pred CC-CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCc
Confidence 55 469999999999999999999999987 99999974321 11 233334333221000 00000000000
Q ss_pred C----------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEc--CCC--cEEecCEEEEccCCCccccccc
Q 012545 73 G----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLS--ATG--LIFKYQILVIATGSTVSITSLT 132 (461)
Q Consensus 73 ~----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~--~~~~~d~liiAtG~~~~~~~~~ 132 (461)
. ........++..+++.+.+ .... .+.+++.+ .++ +++.||+||||||++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~----- 148 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTF--TDANTLEVDLNDGGTETVTFDNAIIATGSSTR----- 148 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEE--cCCCEEEEEecCCCeeEEEcCEEEEeCCCCCC-----
Confidence 0 0000111223356777665 2222 23454433 344 36899999999999993
Q ss_pred cccccCccccccccCCcccccccccCCCCCCCC-CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHH
Q 012545 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI 211 (461)
Q Consensus 133 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~ 211 (461)
.+ ||.+ ...+++..+ ... ....+++++|||+|++|+|+|..|++
T Consensus 149 ----------------------~~-----pg~~~~~~v~~~~~---~~~-----~~~~~~~vvVIGgG~ig~E~A~~l~~ 193 (466)
T PRK07818 149 ----------------------LL-----PGTSLSENVVTYEE---QIL-----SRELPKSIVIAGAGAIGMEFAYVLKN 193 (466)
T ss_pred ----------------------CC-----CCCCCCCcEEchHH---Hhc-----cccCCCeEEEECCcHHHHHHHHHHHH
Confidence 22 2221 123443321 111 11247899999999999999999999
Q ss_pred CCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEEEEccC
Q 012545 212 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVG 287 (461)
Q Consensus 212 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~vi~a~G 287 (461)
.|.+|+++++.+++++. +++++.+.+.+.|+++||+++++++|++++.+ ++ ...+.+. +| +++++|.|++|+|
T Consensus 194 ~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~~~g~~~~i~~D~vi~a~G 270 (466)
T PRK07818 194 YGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GS-KVTVTVSKKDGKAQELEADKVLQAIG 270 (466)
T ss_pred cCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CC-eEEEEEEecCCCeEEEEeCEEEECcC
Confidence 99999999999999987 79999999999999999999999999999862 22 2334443 66 4799999999999
Q ss_pred CCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCC
Q 012545 288 GRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363 (461)
Q Consensus 288 ~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 363 (461)
++||++.+ ..++.. ++|+|.||+++||+.|+|||+|||+..+ +.+..|..||+.||.||++... .
T Consensus 271 ~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~-~ 339 (466)
T PRK07818 271 FAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAET-L 339 (466)
T ss_pred cccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCC-C
Confidence 99999853 445655 5788999999999999999999999754 5688899999999999986531 1
Q ss_pred cccCCCCCCeEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCC
Q 012545 364 TVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGT 427 (461)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~ 427 (461)
....|..+|...++.++++.+ |.++ |..+. +.+...+ ....+|.|+.+ ++++|||+|++|++
T Consensus 340 ~~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~ 417 (466)
T PRK07818 340 ELGDYRMMPRATFCQPQVASF--GLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPD 417 (466)
T ss_pred ccCccCCCCeEEECCCCeEEE--eCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCC
Confidence 122677789887776766655 5543 22221 1121111 23567888887 57999999999999
Q ss_pred HHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 428 PEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 428 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+++ ++.++.+|+.++|++||....-+.++|++
T Consensus 418 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 450 (466)
T PRK07818 418 VSELLPELTLAQKWDLTAEELARNVHTHPTLSE 450 (466)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCccCCCchHH
Confidence 888 68999999999999998877667776654
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=373.89 Aligned_cols=392 Identities=20% Similarity=0.244 Sum_probs=277.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCC----CCCC--CceeecCC---C-
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLP--GFHVCVGS---G- 73 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~---~- 73 (461)
+|+||||||||++||..+++.|.+ |+|||+++.. .+..|.++|.++..... .... ++...... +
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 899999999999999999999987 9999998642 12234445554322100 0000 00000000 0
Q ss_pred -------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC-cEEecCEEEEccCCCccccccccccccCc
Q 012545 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVSITSLTSIRSKHC 139 (461)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~liiAtG~~~~~~~~~g~~~~~~ 139 (461)
.......++++.+++++.+ ++..++.....|..+++ ++++||+||||||++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~----------- 146 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTE----------- 146 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCC-----------
Confidence 0011223445678999887 55555533333444444 369999999999999933
Q ss_pred cccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 012545 140 LCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 219 (461)
Q Consensus 140 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli 219 (461)
+| +++.+...+++.. ++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++
T Consensus 147 ----------------~p---~~~~~~~~v~~~~---~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli 199 (458)
T PRK06912 147 ----------------LP---FAPFDGKWIINSK---HAMSLP----S-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIV 199 (458)
T ss_pred ----------------CC---CCCCCCCeEEcch---HHhCcc----c-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 22 2333333344332 222221 1 3689999999999999999999999999999
Q ss_pred ccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChhhh--
Q 012545 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF-- 295 (461)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~~~-- 295 (461)
++.+++++. +++++.+.+.+.|++.||++++++++++++. ++....+.. +| +++++|.|++|+|++|+++.+
T Consensus 200 ~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l 275 (458)
T PRK06912 200 EMAPQLLPG-EDEDIAHILREKLENDGVKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNL 275 (458)
T ss_pred ecCCCcCcc-ccHHHHHHHHHHHHHCCCEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCc
Confidence 999999887 7999999999999999999999999999976 232223333 34 369999999999999998754
Q ss_pred -hcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeE
Q 012545 296 -KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYF 374 (461)
Q Consensus 296 -~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~ 374 (461)
..++..++++|.||+++||+.|+|||+|||+..+ +.+..|..||+.||.++.+.. ....+..+|..
T Consensus 276 ~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~---~~~~~~~~p~~ 342 (458)
T PRK06912 276 EKAGVQFSNKGISVNEHMQTNVPHIYACGDVIGGI----------QLAHVAFHEGTTAALHASGED---VKVNYHAVPRC 342 (458)
T ss_pred hhcCceecCCCEEeCCCeecCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCC---CCCCcCCCCeE
Confidence 2345554556999999999999999999999754 567789999999999998643 12446778887
Q ss_pred EEecCCcceEEccCCC------CcEEEec-----CCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHH
Q 012545 375 YSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKV 437 (461)
Q Consensus 375 ~~~~~~~~~~~~g~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~ 437 (461)
+++.+++..+ |.++ |..+... ..... ..+.+|.|+++ ++++|||+|++|+++.+ ++.++.+
T Consensus 343 v~~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~a 420 (458)
T PRK06912 343 IYTSPEIASV--GLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVM 420 (458)
T ss_pred EecCchhEEe--eCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
Confidence 7666666555 5443 2112211 11111 23567888887 57999999999999888 6899999
Q ss_pred HHcCCCCCChhhhhccCCCccc
Q 012545 438 ARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
|+.+++++|+..+.-+.++|.+
T Consensus 421 i~~~~t~~~l~~~~~~hPt~~e 442 (458)
T PRK06912 421 IHTEVTADIMEDFIAAHPTLSE 442 (458)
T ss_pred HHCCCCHHHHhhCcccCCCHHH
Confidence 9999999998888778887765
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=370.41 Aligned_cols=394 Identities=17% Similarity=0.206 Sum_probs=278.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC-C---CCC-CcccccccCCCCCCCCCCceeecC------C
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-P---YER-PALSKAYLFPEGTARLPGFHVCVG------S 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~ 72 (461)
+.|||+||||||||++||..|+++|++ |+|+|+++.. . ... |..++.++..... ...+..... .
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--~~~~~~~~~~~~~~~~ 76 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAMYGGTCINIGCIPTKTLLVAAEK--NLSFEQVMATKNTVTS 76 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcccceeeecCccccchHhhhhhhc--CCCHHHHHHHHHHHHH
Confidence 379999999999999999999999987 9999998632 1 111 2223333322110 001100000 0
Q ss_pred CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC---CcEEecCEEEEccCCCccccccccccccCccccccccCCc
Q 012545 73 GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLP 149 (461)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p 149 (461)
.......+.+.+.+++++.++ +.. .+.++|.+.+ ..++.||++|||||++|..|++||+.
T Consensus 77 ~~~~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~-------------- 139 (438)
T PRK07251 77 RLRGKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLA-------------- 139 (438)
T ss_pred HHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcC--------------
Confidence 001112345667899998874 333 3456665533 24689999999999999666555542
Q ss_pred ccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc
Q 012545 150 LFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL 229 (461)
Q Consensus 150 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~ 229 (461)
+.+++++..++ ..+. . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++.
T Consensus 140 ---------------~~~~v~~~~~~---~~~~----~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~- 195 (438)
T PRK07251 140 ---------------DSKHVYDSTGI---QSLE----T-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR- 195 (438)
T ss_pred ---------------CCCcEEchHHH---hcch----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-
Confidence 12334443322 2221 1 4789999999999999999999999999999999999887
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh---ccccc-CCCc
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGG 305 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~---~~~~~-~~g~ 305 (461)
.++++.+.+.+.+++.||+++++++|++++.+ ++. ..+. .+|+++++|.+|+|+|++|+.+.+. .++.. .+|+
T Consensus 196 ~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~-v~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~ 272 (438)
T PRK07251 196 EEPSVAALAKQYMEEDGITFLLNAHTTEVKND-GDQ-VLVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGA 272 (438)
T ss_pred CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCE-EEEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCc
Confidence 68999999999999999999999999999862 232 2333 4567899999999999999987642 34444 5688
Q ss_pred EEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEE
Q 012545 306 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 385 (461)
Q Consensus 306 i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 385 (461)
|.||+++||+.|+|||+|||++.+ .....|..+|+.++.++++... .....+..+|+..+..+++ ..
T Consensus 273 i~vd~~~~t~~~~IyaiGD~~~~~----------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~p~i--a~ 339 (438)
T PRK07251 273 IKVDDYCQTSVPGVFAVGDVNGGP----------QFTYISLDDFRIVFGYLTGDGS-YTLEDRGNVPTTMFITPPL--SQ 339 (438)
T ss_pred EEECCCcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCC-ccccccCCCCEEEECCCce--Ee
Confidence 999999999999999999999765 3456678899999999886532 1223556688775544444 44
Q ss_pred ccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChh
Q 012545 386 YGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLD 448 (461)
Q Consensus 386 ~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 448 (461)
+|.++ |..+. +.....+ ...++|.|+++ ++++|||+|++|+++.+ ++.++.+|++++|++++.
T Consensus 340 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 419 (438)
T PRK07251 340 VGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFK 419 (438)
T ss_pred eeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 46543 22111 2211111 23456888887 57999999999999888 699999999999999887
Q ss_pred hhhccCCCccc
Q 012545 449 VLKNEGLSFAS 459 (461)
Q Consensus 449 ~l~~~~~~~~~ 459 (461)
...-+.+++++
T Consensus 420 ~~~~~hPt~~e 430 (438)
T PRK07251 420 KQIFTHPTMAE 430 (438)
T ss_pred cccccCCChHH
Confidence 76667777654
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=378.29 Aligned_cols=394 Identities=18% Similarity=0.213 Sum_probs=277.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--C-CCCCcccccccCCCCC------CCC-CCceeecCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--P-YERPALSKAYLFPEGT------ARL-PGFHVCVGSG 73 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--~-~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~ 73 (461)
..|||+||||||||++||..|++.|.+ |+|||++... + +..|.++|.++..... ..+ .++.......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 469999999999999999999999987 9999998431 1 1223334433221100 000 0110000000
Q ss_pred CC----------------CCCHhHHHHc-CcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCccccccccc
Q 012545 74 GE----------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 74 ~~----------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
.. ......++.. +++++.+ ++..++.....|.+.+++ +++||+||||||++|.+|.+||+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~ 252 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGL 252 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCC
Confidence 00 0112233444 7899887 677666554455555553 69999999999999977766664
Q ss_pred cccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC
Q 012545 135 RSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 214 (461)
Q Consensus 135 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~ 214 (461)
.+ ..+++ +.+.+ .. ...+++++|||+|++|+|+|..|.+.|.
T Consensus 253 ~~------------------------------~~~~~--~~~~~-~~-----~~~~~~vvViGgG~ig~E~A~~l~~~g~ 294 (561)
T PRK13748 253 KE------------------------------TPYWT--STEAL-VS-----DTIPERLAVIGSSVVALELAQAFARLGS 294 (561)
T ss_pred Cc------------------------------cceEc--cHHHh-hc-----ccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 31 11221 11111 10 1147899999999999999999999999
Q ss_pred cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh
Q 012545 215 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~ 294 (461)
+|+++++. .+++. +++++.+.+.+.|++.||++++++++++++.+ ++ ...+.+.++ ++++|.|++|+|++||+.+
T Consensus 295 ~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~-~~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 295 KVTILARS-TLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DG-EFVLTTGHG-ELRADKLLVATGRAPNTRS 369 (561)
T ss_pred EEEEEecC-ccccc-cCHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CC-EEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence 99999985 45665 79999999999999999999999999999863 33 234555555 7999999999999999985
Q ss_pred h---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCC
Q 012545 295 F---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY 370 (461)
Q Consensus 295 ~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 370 (461)
+ ..++.. ++|+|.||+++||++|||||+|||++.+ .....|..||+.||.||++.. ...++..
T Consensus 370 l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~~ 436 (561)
T PRK13748 370 LALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGD---AALDLTA 436 (561)
T ss_pred cCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCC---cccCCCC
Confidence 4 345655 5788999999999999999999999875 346678899999999998653 2245566
Q ss_pred CCeEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 371 LPYFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 371 ~p~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
+|...+..++++ .+|.++ |..+ .+.+.... ...++|.|+++ ++++|||+|++|+.+.+ ++.
T Consensus 437 ~p~~~~~~p~~a--~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~ 514 (561)
T PRK13748 437 MPAVVFTDPQVA--TVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQT 514 (561)
T ss_pred CCeEEEccCCce--eeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHH
Confidence 787665555554 446554 3211 12221111 23567899888 48999999999999888 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCccc
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+|+.++|++|+..+.-+.+++++
T Consensus 515 ~~~ai~~~~t~~~l~~~~~~~Pt~~e 540 (561)
T PRK13748 515 AALAIRNRMTVQELADQLFPYLTMVE 540 (561)
T ss_pred HHHHHHcCCCHHHHhcccccCCchHH
Confidence 99999999999987777767766654
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=369.79 Aligned_cols=393 Identities=18% Similarity=0.191 Sum_probs=276.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC---------C---CCCCCCcccccccCCCCC----CCCCCcee
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA---------V---APYERPALSKAYLFPEGT----ARLPGFHV 68 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~---------~---~~~~~~~~~~~~~~~~~~----~~~~~~~~ 68 (461)
.||+||||+|+||+.||..+++.|.+ |++||+.. . ..+..|.++|.++..... .....+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence 58999999999999999999999987 99999731 1 112234444544432110 00011100
Q ss_pred ecCC----C--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcC--CC--cEEecCEEEEccCCCc
Q 012545 69 CVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTV 126 (461)
Q Consensus 69 ~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~liiAtG~~~ 126 (461)
.... + .......+++..+|+++.+ ....++ .++|.+. ++ ++++||+||||||++|
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVD--KHRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 0000 0 0112234566789999998 444444 4455442 33 3699999999999999
Q ss_pred cccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHH
Q 012545 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 206 (461)
Q Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a 206 (461)
.+|++||..+ ..+ +.+++..+. ..+++++|||+|++|+|+|
T Consensus 156 ~~p~ipG~~~-------------------------------~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A 196 (484)
T TIGR01438 156 RYPGIPGAKE-------------------------------LCI---TSDDLFSLP-----YCPGKTLVVGASYVALECA 196 (484)
T ss_pred CCCCCCCccc-------------------------------eee---cHHHhhccc-----ccCCCEEEECCCHHHHHHH
Confidence 7666555421 111 222222221 1367999999999999999
Q ss_pred HHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC---cEEecCEEE
Q 012545 207 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVV 283 (461)
Q Consensus 207 ~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G---~~i~aD~vi 283 (461)
..|++.|.+|+++.+ +.+++. +++++.+.+.+.|++.||++++++.++++...+ +. ..+++.++ +++++|.|+
T Consensus 197 ~~l~~~G~~Vtli~~-~~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl 272 (484)
T TIGR01438 197 GFLAGIGLDVTVMVR-SILLRG-FDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVL 272 (484)
T ss_pred HHHHHhCCcEEEEEe-cccccc-cCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEE
Confidence 999999999999997 567765 799999999999999999999999999998632 22 35666655 379999999
Q ss_pred EccCCCCChhhh---hcccccC--CCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 284 VGVGGRPLISLF---KGQVAEN--KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 284 ~a~G~~p~~~~~---~~~~~~~--~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
+|+|++||++++ ..++..+ +|+|.||+++||+.|+|||+|||+.... .....|.+||+.+|+||++
T Consensus 273 ~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 273 LAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred EEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhc
Confidence 999999999864 3345543 4889999999999999999999996422 3567799999999999986
Q ss_pred ccCCCcccCCCCCCeEEEecCCcceEEccCCC-------Cc-EEEe--cCCccc------cC--CCcEEEEEE---eCCE
Q 012545 359 TEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GD-TVLF--GDNDLA------SA--THKFGTYWI---KDGK 417 (461)
Q Consensus 359 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~-~~~~--~~~~~~------~~--~~~~~~~~~---~~~~ 417 (461)
... ....|..+|+..++.++++.+ |.++ +. .+.. ....+. .. ..+|.|+++ ++++
T Consensus 344 ~~~--~~~~~~~~p~~i~~~p~ia~v--Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ 419 (484)
T TIGR01438 344 GST--VICDYENVPTTVFTPLEYGAC--GLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENER 419 (484)
T ss_pred CCC--cccccccCCeEEeCCCceeee--cCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCe
Confidence 431 124567789887777766555 5443 11 1111 111110 11 457888776 3799
Q ss_pred EEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 418 VVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 418 i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
|||+|++|+++.+ ++.++.+|++++|++||..+.-+.+++.+
T Consensus 420 ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE 462 (484)
T TIGR01438 420 VVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAE 462 (484)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHH
Confidence 9999999999888 68999999999999998887767777654
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=369.56 Aligned_cols=393 Identities=18% Similarity=0.174 Sum_probs=274.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCcccccccCCCCC----CCCC--Cceeec-CCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGT----ARLP--GFHVCV-GSG 73 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~~ 73 (461)
.+|++|||+|+||+++|..|++.|.+ |+++|+++... +..|.+++.++..... ...+ ++.... ..+
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 69999999999999999999999987 99999974321 1223334443321100 0001 111000 000
Q ss_pred --------------CC-CCCHhHHHHc-CcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcccccccccc
Q 012545 74 --------------GE-RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 74 --------------~~-~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.. ......++.. +++++.+ ...-++...-.|...+++ ++.||+||||||++|.+|++||+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~ 171 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM 171 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcC
Confidence 00 0122333333 7888887 444444332334445553 689999999999999777666642
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
+ ..+++ + .+. +.. ...+++++|||+|++|+|+|..|.+.|.+
T Consensus 172 ~------------------------------~~~~~--~-~~~--l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~ 213 (479)
T PRK14727 172 D------------------------------TPYWT--S-TEA--LFS---DELPASLTVIGSSVVAAEIAQAYARLGSR 213 (479)
T ss_pred c------------------------------cceec--c-hHH--hcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCE
Confidence 1 11121 1 111 111 11478999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
|+++.+. .+++. +++++.+.+.+.|++.||++++++++++++.+++ ...+.+.++ ++++|.|++|+|++||++++
T Consensus 214 Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~--~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l 288 (479)
T PRK14727 214 VTILARS-TLLFR-EDPLLGETLTACFEKEGIEVLNNTQASLVEHDDN--GFVLTTGHG-ELRAEKLLISTGRHANTHDL 288 (479)
T ss_pred EEEEEcC-CCCCc-chHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC--EEEEEEcCC-eEEeCEEEEccCCCCCccCC
Confidence 9999874 56665 7999999999999999999999999999986332 234566665 69999999999999999854
Q ss_pred ---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC
Q 012545 296 ---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL 371 (461)
Q Consensus 296 ---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 371 (461)
..++.. .+|+|.||+++||++|+|||+|||+..+ .....|..||+.||.||++... ..++...
T Consensus 289 ~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~ 355 (479)
T PRK14727 289 NLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLP----------QFVYVAAAAGSRAGINMTGGNA---TLDLSAM 355 (479)
T ss_pred CchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcc----------hhhhHHHHHHHHHHHHHcCCCc---ccccccC
Confidence 235555 5788999999999999999999999875 3456788999999999987532 2455667
Q ss_pred CeEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHH
Q 012545 372 PYFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAI 434 (461)
Q Consensus 372 p~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~ 434 (461)
|+..+..+++..+ |.++ |..+ .+.+.... ...++|.|+++ ++++|||+|++|+.+.+ ++.+
T Consensus 356 p~~~~~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~ 433 (479)
T PRK14727 356 PAVIFTDPQVATV--GLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSA 433 (479)
T ss_pred CcEEEecCceeee--eCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHH
Confidence 8776655555444 6554 2211 22221111 23567898887 57999999999999888 6899
Q ss_pred HHHHHcCCCCCChhhhhccCCCccc
Q 012545 435 AKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.+|+.++|++||..+.-+.+++.+
T Consensus 434 ~~ai~~~~t~~~l~~~~~~hPt~~E 458 (479)
T PRK14727 434 ALAIHNRMTVEELADQLFPYLTMVE 458 (479)
T ss_pred HHHHHcCCCHHHHhcCCccCCChHH
Confidence 9999999999998877777776654
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=369.43 Aligned_cols=398 Identities=22% Similarity=0.283 Sum_probs=278.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeC-------CCCC--CCCCCc-ccccccCCCCC----CCC-CCc
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-------EAVA--PYERPA-LSKAYLFPEGT----ARL-PGF 66 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~-------~~~~--~~~~~~-~~~~~~~~~~~----~~~-~~~ 66 (461)
|++.||++||||||||++||..+++.|.+ |+|||+ .... +..+.| +++.++..... .+. ..+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 34579999999999999999999999987 999998 2111 111222 22322211100 000 000
Q ss_pred eeecCC---C--------------CCCCCHhHHHHcCcEEEcCCeEEEEeC--CCCEEEcC--CCcEEecCEEEEccCCC
Q 012545 67 HVCVGS---G--------------GERLLPEWYKEKGIELILSTEIVRADI--ASKTLLSA--TGLIFKYQILVIATGST 125 (461)
Q Consensus 67 ~~~~~~---~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~~~~~~~d~liiAtG~~ 125 (461)
...... + ......++++..+++++.+ ++..++. +.++|.+. ++++++||++|||||++
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 78 GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE 156 (475)
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence 000000 0 0011223455678999987 5555552 24566653 34579999999999999
Q ss_pred ccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHH
Q 012545 126 VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 205 (461)
Q Consensus 126 ~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~ 205 (461)
|. .+|. ++ .+...+++. +++..+ . ..+++++|+|+|++|+|+
T Consensus 157 p~---------------------------~~p~--~~-~~~~~~~~~---~~~~~~----~-~~~~~vvVvGgG~~g~E~ 198 (475)
T PRK06327 157 PR---------------------------HLPG--VP-FDNKIILDN---TGALNF----T-EVPKKLAVIGAGVIGLEL 198 (475)
T ss_pred CC---------------------------CCCC--CC-CCCceEECc---HHHhcc----c-ccCCeEEEECCCHHHHHH
Confidence 93 2221 11 112233322 222222 1 147899999999999999
Q ss_pred HHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC--C--cEEecCE
Q 012545 206 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADI 281 (461)
Q Consensus 206 a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--G--~~i~aD~ 281 (461)
|..|++.|.+|+++++.+++++. +++++.+.+.+.|++.||+++++++|++++.++++ ..+.+.+ | +++++|.
T Consensus 199 A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~i~~D~ 275 (475)
T PRK06327 199 GSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG--VSVAYTDADGEAQTLEVDK 275 (475)
T ss_pred HHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE--EEEEEEeCCCceeEEEcCE
Confidence 99999999999999999998886 79999999999999999999999999999873322 3455444 3 4799999
Q ss_pred EEEccCCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 282 VVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 282 vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
+++|+|++|+++.+ ..++.. ++|+|.||+++||+.|+|||+|||+..+ .....|..||+.||.||.
T Consensus 276 vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 276 LIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIA 345 (475)
T ss_pred EEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHc
Confidence 99999999999854 234555 5788999999999999999999999754 457789999999999998
Q ss_pred cccCCCcccCCCCCCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEE
Q 012545 358 ATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGV 421 (461)
Q Consensus 358 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~ 421 (461)
+... ...|..+|+.+++.++++.+ |.++ |..+.. .+...+ ....+|+|+++ ++++|||+
T Consensus 346 g~~~---~~~~~~~p~~~~~~pe~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~ 420 (475)
T PRK06327 346 GQKG---HIDYNTIPWVIYTSPEIAWV--GKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGV 420 (475)
T ss_pred CCCC---CCCCCCCCeEEeCCcceEEE--eCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEE
Confidence 6531 24677789887665665554 6544 221211 111111 23567888887 58999999
Q ss_pred EEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 422 FLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 422 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
|++|+++.+ ++.++.+|++++|++||..+.-+.+++.+
T Consensus 421 ~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 459 (475)
T PRK06327 421 HVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSE 459 (475)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHH
Confidence 999999888 68999999999999998888777777653
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=364.78 Aligned_cols=393 Identities=18% Similarity=0.236 Sum_probs=279.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCC----CCCCCceee-------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVC------- 69 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~------- 69 (461)
+.||++|||+|++|..||.. ..|.+ |+|||++... .+..|.++|.++..... .+...+...
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 75 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVR 75 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccC
Confidence 36999999999999998654 45876 9999997542 23345556655532211 000111000
Q ss_pred ----cCCC---CCC---C-CHhHH---HHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccccc
Q 012545 70 ----VGSG---GER---L-LPEWY---KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 70 ----~~~~---~~~---~-~~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.... ... . ..... ++.+++++.++.+.. +.++|.+.+++++.||+||||||++|.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p------ 146 (452)
T TIGR03452 76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIP------ 146 (452)
T ss_pred HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCC------
Confidence 0000 000 0 01111 237899999865443 57788887888899999999999999433
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
+. .+. .++ .+.+.+++..+.+ .+++++|||+|++|+|+|..|.+.|.+
T Consensus 147 ---------------------~~---~~~--~~~-~~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~ 194 (452)
T TIGR03452 147 ---------------------PA---IAD--SGV-RYHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTR 194 (452)
T ss_pred ---------------------CC---CCC--CCC-EEEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCc
Confidence 21 111 122 2235555555432 378999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
|+++++.+.+++. +++++.+.+.+.++ .||+++++++|++++.++++ ..+++.+|+++++|.|++|+|++|+++++
T Consensus 195 Vtli~~~~~ll~~-~d~~~~~~l~~~~~-~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 195 VTIVNRSTKLLRH-LDEDISDRFTEIAK-KKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLL 270 (452)
T ss_pred EEEEEccCccccc-cCHHHHHHHHHHHh-cCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCc
Confidence 9999999998876 79999988877554 68999999999999863333 45677788899999999999999999875
Q ss_pred h---ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC
Q 012545 296 K---GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL 371 (461)
Q Consensus 296 ~---~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 371 (461)
. .++.. ++|+|.||+++||+.|+|||+|||++.+ +....|.+||+++|+||++.... ....+..+
T Consensus 271 ~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~ 339 (452)
T TIGR03452 271 DAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDL-RKMPHDFV 339 (452)
T ss_pred CchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCc-ccCCCCCC
Confidence 3 35665 5788999999999999999999999865 34567889999999999875310 12556778
Q ss_pred CeEEEecCCcceEEccCCC------CcEEEec-----CCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHH
Q 012545 372 PYFYSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAI 434 (461)
Q Consensus 372 p~~~~~~~~~~~~~~g~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~ 434 (461)
|+.+++.+++..+ |.++ |..+... ....+ ..+.+|.|+++ ++++|||+|++|+++.+ ++.+
T Consensus 340 p~~i~t~p~ia~v--Glte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~ 417 (452)
T TIGR03452 340 PSAVFTHPQIATV--GLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPL 417 (452)
T ss_pred CeEEECCCCeeee--eCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHH
Confidence 9887766666555 5544 2222111 11111 23567888888 58999999999999987 6899
Q ss_pred HHHHHcCCCCCChhhh-hccCCCccc
Q 012545 435 AKVARVQPSVESLDVL-KNEGLSFAS 459 (461)
Q Consensus 435 ~~~~~~~~~~~~~~~l-~~~~~~~~~ 459 (461)
+.+|+.++|++||..+ .-+.++|++
T Consensus 418 ~~ai~~~~t~~~l~~~~~~~hPt~~e 443 (452)
T TIGR03452 418 ITAMAFGLDAREMARKQYWIHPALPE 443 (452)
T ss_pred HHHHHcCCCHHHHhhCCcccCCchHH
Confidence 9999999999998765 346666654
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=373.46 Aligned_cols=398 Identities=20% Similarity=0.261 Sum_probs=279.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC--CC---CCCCCCcccccccCCCCC----CC---CCCceee---
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--AV---APYERPALSKAYLFPEGT----AR---LPGFHVC--- 69 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~--~~---~~~~~~~~~~~~~~~~~~----~~---~~~~~~~--- 69 (461)
.|||+|||+|++|..||..++++|.+ |+|||++ .. +....|.++|.++..... .+ ...+...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~ 192 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA 192 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence 68999999999999999999999988 9999975 22 123335555655443311 00 0111100
Q ss_pred --------------c-CC-C-C---------------CCCCHhHHHHcC-------cEEEcCCeEEEEeCCCCEEEc-CC
Q 012545 70 --------------V-GS-G-G---------------ERLLPEWYKEKG-------IELILSTEIVRADIASKTLLS-AT 109 (461)
Q Consensus 70 --------------~-~~-~-~---------------~~~~~~~~~~~~-------v~~~~~~~v~~i~~~~~~v~~-~~ 109 (461)
. .. . . .......++..+ ++++.+.. .-+ +.++|.+ .+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a-~f~--~~~~v~v~~~ 269 (659)
T PTZ00153 193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERG-HIV--DKNTIKSEKS 269 (659)
T ss_pred ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEE-EEe--cCCeEEEccC
Confidence 0 00 0 0 011122233333 67777632 222 3455544 35
Q ss_pred CcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcC
Q 012545 110 GLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 189 (461)
Q Consensus 110 ~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 189 (461)
++++.||++|||||++|.+|. +++.+..++++.. ++..+.. .
T Consensus 270 g~~i~ad~lIIATGS~P~~P~------------------------------~~~~~~~~V~ts~---d~~~l~~-----l 311 (659)
T PTZ00153 270 GKEFKVKNIIIATGSTPNIPD------------------------------NIEVDQKSVFTSD---TAVKLEG-----L 311 (659)
T ss_pred CEEEECCEEEEcCCCCCCCCC------------------------------CCCCCCCcEEehH---Hhhhhhh-----c
Confidence 678999999999999995432 2223334566543 3333321 3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH-HhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
+++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++.+.+.+.+ ++.||++++++.|++++.++++....
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~ 390 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVI 390 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEE
Confidence 789999999999999999999999999999999999986 8999999998875 67999999999999998643333234
Q ss_pred EEeCC-------C--------cEEecCEEEEccCCCCChhhh---hcccccCCCcEEeCCCCCCC------CCCEEEeCc
Q 012545 269 VKLKD-------G--------RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTS------ADDVYAVGD 324 (461)
Q Consensus 269 v~~~~-------G--------~~i~aD~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~------~~~vya~GD 324 (461)
+.+.+ + +++++|.|++|+|++||++.+ ..++..++|+|.||++|||+ +|+|||+||
T Consensus 391 v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGD 470 (659)
T PTZ00153 391 IGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGD 470 (659)
T ss_pred EEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEe
Confidence 44321 1 379999999999999999865 33455566889999999997 699999999
Q ss_pred ccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC----------CcccCCCCCCeEEEecCCcceEEccCCC----
Q 012545 325 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG----------KTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 390 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~----------~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 390 (461)
|++.+ .....|..||+.|++||.+.... .....|..+|...++.++++.+ |.++
T Consensus 471 v~g~~----------~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~V--GlTE~eA~ 538 (659)
T PTZ00153 471 ANGKQ----------MLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFI--GLTEKEAK 538 (659)
T ss_pred cCCCc----------cCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEe--eCCHHHHH
Confidence 99754 45778999999999999875210 1225577889887877777666 5443
Q ss_pred --C--cE-----EEecCCccc-------------------------cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 391 --G--DT-----VLFGDNDLA-------------------------SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 391 --~--~~-----~~~~~~~~~-------------------------~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
+ .. ..+...... ...++|.|+++ ++++|||+|++|+++.+ ++.
T Consensus 539 ~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~ 618 (659)
T PTZ00153 539 ELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHE 618 (659)
T ss_pred hcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHH
Confidence 2 01 112221111 01567888887 58999999999999988 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCccc
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+|+.+++++|+..+.-+.+++.+
T Consensus 619 ~a~aI~~~~tv~dl~~~~~~hPT~sE 644 (659)
T PTZ00153 619 GVLAINLKLSVKDLAHMVHSHPTISE 644 (659)
T ss_pred HHHHHHCCCCHHHHhhCcCCCCChHH
Confidence 99999999999998888777777654
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=368.56 Aligned_cols=395 Identities=23% Similarity=0.250 Sum_probs=276.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCC----CCCCCCceeecC-C--C
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVG-S--G 73 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~--~ 73 (461)
+.|||||||||+||++||..|++.|.+ |+|||++.... +..|.+++.++.... ..+.+.+..... . .
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 469999999999999999999999987 99999954311 222333443332110 000111100000 0 0
Q ss_pred --------------CCCCC-HhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccC
Q 012545 74 --------------GERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKH 138 (461)
Q Consensus 74 --------------~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~ 138 (461)
..... ...++..+++++.+ .+..+ +.+.+.+ +++++.||++|+|||+. +|.+||+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~--~~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~-- 150 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFV--DPNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWL-- 150 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEc--cCCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcc--
Confidence 00111 23344567887765 44433 3345555 66789999999999998 455555421
Q ss_pred ccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEE
Q 012545 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSM 218 (461)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtl 218 (461)
.....++++ ++...+. ..+++++|||+|++|+|+|..|.+.|.+|++
T Consensus 151 -------------------------~~~~~~~~~---~~~~~~~-----~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtl 197 (460)
T PRK06292 151 -------------------------ILGDRLLTS---DDAFELD-----KLPKSLAVIGGGVIGLELGQALSRLGVKVTV 197 (460)
T ss_pred -------------------------cCCCcEECc---hHHhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 012234332 2222221 1478999999999999999999999999999
Q ss_pred EccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChhhh-
Q 012545 219 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF- 295 (461)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~~~- 295 (461)
+++.+++++. +++++.+.+.+.|++. |++++++++++++.+++ ....+++.++ +++++|.|++|+|++||++.+
T Consensus 198 i~~~~~~l~~-~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~ 274 (460)
T PRK06292 198 FERGDRILPL-EDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKGGKTETIEADYVLVATGRRPNTDGLG 274 (460)
T ss_pred EecCCCcCcc-hhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcCCceEEEEeCEEEEccCCccCCCCCC
Confidence 9999999886 7999999999999999 99999999999986322 1223333333 579999999999999999853
Q ss_pred --hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 --~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++.. ++|+|.||+++||+.|+|||+|||++.+ +.+..|..||+.||.||.+.. .....+..+|
T Consensus 275 l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~--~~~~~~~~~p 342 (460)
T PRK06292 275 LENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP----------PLLHEAADEGRIAAENAAGDV--AGGVRYHPIP 342 (460)
T ss_pred cHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHhcCCC--CCCcCCCCCC
Confidence 345555 5788999999999999999999999764 456789999999999998742 1124566788
Q ss_pred eEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHH
Q 012545 373 YFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIA 435 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~ 435 (461)
+.+++.++++.+ |.++ |..+ .+.....+ ...++|.|+++ ++++|||+|++|+++.+ ++.++
T Consensus 343 ~~~~~~~~~a~v--G~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~ 420 (460)
T PRK06292 343 SVVFTDPQIASV--GLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLA 420 (460)
T ss_pred eEEECCCccEEe--ECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH
Confidence 877766666555 5544 2222 11211111 23567888888 46999999999999888 69999
Q ss_pred HHHHcCCCCCChhhhhccCCCccc
Q 012545 436 KVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.+|+++++++||..+.-+.+++.+
T Consensus 421 ~ai~~~~t~~~l~~~~~~hPt~~e 444 (460)
T PRK06292 421 WAMQQGLTVEDLLRMPFYHPTLSE 444 (460)
T ss_pred HHHHCCCCHHHHhhCccCCCCHHH
Confidence 999999999998877667776654
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=354.98 Aligned_cols=384 Identities=26% Similarity=0.413 Sum_probs=319.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
.+.++||||.|+||..+..++.+...+..+|+++-.+++..|.|..++..+-.......+ .....+|++
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi-----------~l~~~dwy~ 70 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI-----------SLNRNDWYE 70 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH-----------hccchhhHH
Confidence 367899999999999999999996544567999999999999998887655432222222 235679999
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+++|+++.+..++.||++++.|.++.|+++.||+||+||||.|++|. +||
T Consensus 71 ~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P------------------------------iPG 120 (793)
T COG1251 71 ENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP------------------------------IPG 120 (793)
T ss_pred HcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC------------------------------CCC
Confidence 99999999999999999999999999999999999999999996543 567
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
.+.++++.+++++|..++.+.-+ ..++.+|||+|..|+|+|..|.+.|.++++++-.+.++.+.+|+.....+.+.++
T Consensus 121 ~~~~~v~~~R~i~D~~am~~~ar--~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le 198 (793)
T COG1251 121 SDLPGVFVYRTIDDVEAMLDCAR--NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLE 198 (793)
T ss_pred CCCCCeeEEecHHHHHHHHHHHh--ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHH
Confidence 77888999999999999988743 4566899999999999999999999999999999999998899999999999999
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhcc-cccCCCcEEeCCCCCCCCCCEEEe
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ-VAENKGGIETDDFFKTSADDVYAV 322 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~-~~~~~g~i~vd~~~~t~~~~vya~ 322 (461)
+.|++++++....++.. ++++..+.++||+.+++|.||+|+|++||..+.... +..++ +|+||++||||+|+|||+
T Consensus 199 ~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAv 275 (793)
T COG1251 199 DLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAV 275 (793)
T ss_pred hhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeeh
Confidence 99999999999888876 778889999999999999999999999999998654 55444 899999999999999999
Q ss_pred CcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC-CCCeEEEecCCcceEEccCCC----CcEEEec
Q 012545 323 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNV----GDTVLFG 397 (461)
Q Consensus 323 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~----~~~~~~~ 397 (461)
|+|+.+....+ ..+..+..|++++|+++.+...+ .|. .++...-+..++.+.+.|+.. .+.+.+.
T Consensus 276 GEcae~~g~~y------GLVaP~yeq~~v~a~hl~~~~~~----~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~ 345 (793)
T COG1251 276 GECAEHRGKVY------GLVAPLYEQAKVLADHLCGGEAE----AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFR 345 (793)
T ss_pred hhHHHhcCccc------eehhHHHHHHHHHHHHhccCccc----ccccccchhhhcccccceeeccchhhcCCCceEEEe
Confidence 99999876655 57888899999999999987643 122 222222334555566666543 2345555
Q ss_pred CCccccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChh
Q 012545 398 DNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 448 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 448 (461)
|.. ...|.|+.++|++|+|+.++| ++.+-..+..+|.++.+++++.
T Consensus 346 D~~----~~iYKrlvL~dd~IvgavL~G-Dt~d~~~l~~li~~~~~~se~r 391 (793)
T COG1251 346 DEQ----RGIYKKLVLKDDKIVGAVLYG-DTSDGGWLLDLILKGADISEIR 391 (793)
T ss_pred ccc----ccceeEEEEeCCeEEEEEEEe-ecccchHHHHHHhcCCCccccc
Confidence 544 467899999999999999999 5567778888999898887644
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=361.58 Aligned_cols=397 Identities=22% Similarity=0.277 Sum_probs=276.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCC-CcccccccCCCCC-CC---CCCceeecCC---C-
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YER-PALSKAYLFPEGT-AR---LPGFHVCVGS---G- 73 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~-~~~~~~~~~~~~~-~~---~~~~~~~~~~---~- 73 (461)
.|||+|||||+||++||..|++.|.+ |+|||++.... ..+ |.+++.++..... .. ...+...... +
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 38999999999999999999999987 99999943211 112 2223333221110 00 0000000000 0
Q ss_pred -------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC-cEEecCEEEEccCCCccccccccccccCc
Q 012545 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVSITSLTSIRSKHC 139 (461)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~liiAtG~~~~~~~~~g~~~~~~ 139 (461)
.......++++.+++++.+ ++..++.....+...++ .++.||++|+|||++|..|++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~------- 149 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGP------- 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCC-------
Confidence 0001123455678999887 45555433333444343 4799999999999999433221
Q ss_pred cccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 012545 140 LCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 219 (461)
Q Consensus 140 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli 219 (461)
+ +.+...+++ .++...+. ..+++++|||+|++|+|+|..|.+.|.+|+++
T Consensus 150 -------------------~---~~~~~~~~~---~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli 199 (461)
T TIGR01350 150 -------------------F---DFDGEVVIT---STGALNLK-----EVPESLVIIGGGVIGIEFASIFASLGSKVTVI 199 (461)
T ss_pred -------------------C---CCCCceEEc---chHHhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 0 111122333 33333221 14689999999999999999999999999999
Q ss_pred ccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChh--hh
Q 012545 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS--LF 295 (461)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~--~~ 295 (461)
++.+++++. +++++.+.+.+.+++.||+++++++|++++.+ ++. ..+.+.+| +++++|.+|+|+|++|+++ ++
T Consensus 200 ~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~ 276 (461)
T TIGR01350 200 EMLDRILPG-EDAEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQ-VVYENKGGETETLTGEKVLVAVGRKPNTEGLGL 276 (461)
T ss_pred EcCCCCCCC-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCE-EEEEEeCCcEEEEEeCEEEEecCCcccCCCCCc
Confidence 999998886 79999999999999999999999999999863 333 34666667 5799999999999999998 33
Q ss_pred -hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCe
Q 012545 296 -KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY 373 (461)
Q Consensus 296 -~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~ 373 (461)
..++.. .+|+|.||+++||+.|+|||+|||+..+ ..+..|..||+.+|.+|.+.... ...+...|.
T Consensus 277 ~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~~~ 344 (461)
T TIGR01350 277 ENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPA--PIDYDAVPS 344 (461)
T ss_pred HhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCe
Confidence 334555 5688999999999999999999999754 46788999999999999875421 244566777
Q ss_pred EEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHH
Q 012545 374 FYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAK 436 (461)
Q Consensus 374 ~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~ 436 (461)
..+..+++... |.++ |..+.. .+...+ ....+|.|+++ ++++|||+|++|+++.+ ++.++.
T Consensus 345 ~~~~~~~~a~v--G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ 422 (461)
T TIGR01350 345 CIYTDPEVASV--GLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVL 422 (461)
T ss_pred EEecCCceEEE--eCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHH
Confidence 66555555444 5443 221111 111111 23567888877 47999999999999888 689999
Q ss_pred HHHcCCCCCChhhhhccCCCccc
Q 012545 437 VARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+|+.++|++||..+.-+.++|++
T Consensus 423 ai~~~~t~~~l~~~~~~~P~~~e 445 (461)
T TIGR01350 423 AMELELTVEELAKTIHPHPTLSE 445 (461)
T ss_pred HHHCCCCHHHHhcCcccCCCHHH
Confidence 99999999998888777777754
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=360.55 Aligned_cols=396 Identities=20% Similarity=0.203 Sum_probs=273.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC----C----C---CCCC-CcccccccCCCCC-----CCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA----V----A---PYER-PALSKAYLFPEGT-----ARLP 64 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~----~----~---~~~~-~~~~~~~~~~~~~-----~~~~ 64 (461)
|+..|||+||||||||++||..|+++|.+ |+|||++. . . +.++ |.++|.++..... ....
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~ 78 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ 78 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence 33469999999999999999999999987 99999732 1 0 1111 2223322211000 0000
Q ss_pred CceeecCC----------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC---CcEEecCEEEEccCCC
Q 012545 65 GFHVCVGS----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGST 125 (461)
Q Consensus 65 ~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~liiAtG~~ 125 (461)
.+...... .........++..+|+++.+ ++.. .+.++|.+.+ ++.++||+||||||++
T Consensus 79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~ 155 (499)
T PTZ00052 79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGR 155 (499)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCC
Confidence 00000000 00001112223357887776 3333 3455665532 3479999999999999
Q ss_pred ccccc-cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHH
Q 012545 126 VSITS-LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 204 (461)
Q Consensus 126 ~~~~~-~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e 204 (461)
|.+|. +||. +. ..+ +.+++..+. ..+++++|||+|++|+|
T Consensus 156 p~~p~~i~G~------------------------------~~-~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E 196 (499)
T PTZ00052 156 PSIPEDVPGA------------------------------KE-YSI---TSDDIFSLS-----KDPGKTLIVGASYIGLE 196 (499)
T ss_pred CCCCCCCCCc------------------------------cc-eee---cHHHHhhhh-----cCCCeEEEECCCHHHHH
Confidence 95542 4442 11 111 223332221 14689999999999999
Q ss_pred HHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEE
Q 012545 205 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 205 ~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
+|..|++.|.+||++.+. .+++. +++++.+.+.+.|++.||++++++.++++...+ +. ..+.+.+|+++++|.|++
T Consensus 197 ~A~~l~~~G~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~ 272 (499)
T PTZ00052 197 TAGFLNELGFDVTVAVRS-IPLRG-FDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLY 272 (499)
T ss_pred HHHHHHHcCCcEEEEEcC-ccccc-CCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEE
Confidence 999999999999999874 56665 899999999999999999999999999998633 22 457778898999999999
Q ss_pred ccCCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 285 GVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 285 a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++|++||++++ ..++.. .+|++.+++. ||+.|+|||+|||+.... ..+..|.+||+.+|.||++..
T Consensus 273 a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~ 342 (499)
T PTZ00052 273 ATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQS 342 (499)
T ss_pred eeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCC
Confidence 99999999876 334555 5677777777 999999999999996321 467889999999999998753
Q ss_pred CCCcccCCCCCCeEEEecCCcceEEccCCC-------C-cEEEecC--C---ccc------------------cCCCcEE
Q 012545 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------G-DTVLFGD--N---DLA------------------SATHKFG 409 (461)
Q Consensus 361 ~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~~~~~~~--~---~~~------------------~~~~~~~ 409 (461)
.....+..+|+.+++.++++.+ |.++ + ..+.... . ... ..+++|.
T Consensus 343 --~~~~~~~~~p~~ift~p~ia~v--Glte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 418 (499)
T PTZ00052 343 --NEFIDYTFIPTTIFTPIEYGAC--GYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLA 418 (499)
T ss_pred --CCcCccccCCeEEecCCcceee--cCCHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceE
Confidence 2235677789988877777655 5443 1 1111110 0 000 0146788
Q ss_pred EEEE-e--CCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 410 TYWI-K--DGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 410 ~~~~-~--~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
|+++ + +++|||+|++|++++| ++.++.+|+++++++||..+.-+.+++++.
T Consensus 419 Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~ 473 (499)
T PTZ00052 419 KLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEV 473 (499)
T ss_pred EEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchh
Confidence 8876 3 6999999999999988 689999999999999998888888887753
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=347.47 Aligned_cols=390 Identities=18% Similarity=0.272 Sum_probs=290.3
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCC-HhHHHHcCcEEEcCCeEEE
Q 012545 19 YAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEKGIELILSTEIVR 97 (461)
Q Consensus 19 ~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v~~ 97 (461)
+||.+|++.+ +..+|+|||+++.+.|..+.+.. +..... ..+. ...... .+++.+.+++++.+++|+.
T Consensus 1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~--~~~~-------~~~~~~~~~~~~~~gv~~~~~~~V~~ 69 (427)
T TIGR03385 1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPY-VIGGVI--DDRN-------KLLAYTPEVFIKKRGIDVKTNHEVIE 69 (427)
T ss_pred CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCe-Eecccc--CCHH-------HcccCCHHHHHHhcCCeEEecCEEEE
Confidence 4788898864 45679999999876654322211 111000 0000 001122 3455889999988889999
Q ss_pred EeCCCCEEEcCC---CcEEe--cCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEe
Q 012545 98 ADIASKTLLSAT---GLIFK--YQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYL 172 (461)
Q Consensus 98 i~~~~~~v~~~~---~~~~~--~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~ 172 (461)
++++.+.+.+.+ ++++. ||+||||||++|..|. +||.+..++++.
T Consensus 70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~------------------------------i~G~~~~~v~~~ 119 (427)
T TIGR03385 70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN------------------------------IEGINLDIVFTL 119 (427)
T ss_pred EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCC------------------------------CCCcCCCCEEEE
Confidence 999888877643 34677 9999999999995443 445445678889
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcC
Q 012545 173 REIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 252 (461)
Q Consensus 173 ~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~ 252 (461)
+++.++..+++.+....+++++|+|+|++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.|++.||+++++
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 199 (427)
T TIGR03385 120 RNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLN 199 (427)
T ss_pred CCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeC
Confidence 99999998888886556899999999999999999999999999999999887544478999999999999999999999
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCCCCCCEEEeCcccccCc
Q 012545 253 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPM 330 (461)
Q Consensus 253 ~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~ 330 (461)
++++++.. ++.+ +.+.+|+++++|.+|+|+|++|+.++++. ++.. .+|+|.||+++||+.|+|||+|||+..+.
T Consensus 200 ~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~ 275 (427)
T TIGR03385 200 EEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHN 275 (427)
T ss_pred CEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeee
Confidence 99999975 4433 56678889999999999999999988754 5655 57899999999999999999999998766
Q ss_pred cccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC-CCCeEEEecCCcceEEccCCC------CcEE---Ee--cC
Q 012545 331 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNV------GDTV---LF--GD 398 (461)
Q Consensus 331 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~------~~~~---~~--~~ 398 (461)
...+.....+.+..|.+||++||+||.+.. ..|. ..+.....+++..+..+|.++ |..+ .+ .+
T Consensus 276 ~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~-----~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~ 350 (427)
T TIGR03385 276 IITKKPAWVPLAWGANKMGRIAGENIAGND-----IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKT 350 (427)
T ss_pred ccCCCceeeechHHHHHHHHHHHHHhcCCC-----CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCC
Confidence 544444445688899999999999998753 2333 223334555666777778654 2211 11 11
Q ss_pred Ccc--ccCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhh-ccCCCcc
Q 012545 399 NDL--ASATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLK-NEGLSFA 458 (461)
Q Consensus 399 ~~~--~~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 458 (461)
... .....+|.|+++ ++++|||+|++|+. +.+ ++.++.+|++++|++|+..+. -..++|+
T Consensus 351 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~ 417 (427)
T TIGR03385 351 HANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYS 417 (427)
T ss_pred CCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCC
Confidence 111 123456888887 47999999999998 777 689999999999998876443 3334444
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=314.39 Aligned_cols=391 Identities=19% Similarity=0.257 Sum_probs=292.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCC-----CCCCCceeecCCCC-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT-----ARLPGFHVCVGSGG- 74 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~- 74 (461)
+.||+.|||||.+|+++|+..++.|.+ +.|+|-.-.. +-.+.|.+|..++.... .+..++.+......
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 469999999999999999999999988 9999987221 22334555554443311 11111111110000
Q ss_pred -------------CCC----CHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcccccccccc
Q 012545 75 -------------ERL----LPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 75 -------------~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
..+ +...+.+.+++++.+ +..-+++.+-.|...++. .+.+++++||+|++|.+|+|||.+
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E 174 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAE 174 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchh
Confidence 001 122233467888887 555555555567776774 368899999999999999999964
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
-|.+.++.|.+.+ .|++++|+|+|++++|+|..++.+|.+
T Consensus 175 --------------------------~gidSDgff~Lee--------------~Pkr~vvvGaGYIavE~Agi~~gLgse 214 (478)
T KOG0405|consen 175 --------------------------LGIDSDGFFDLEE--------------QPKRVVVVGAGYIAVEFAGIFAGLGSE 214 (478)
T ss_pred --------------------------hccccccccchhh--------------cCceEEEEccceEEEEhhhHHhhcCCe
Confidence 2334455554322 489999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
++++-|.+.++.. ||+.+++.+.+.++..||++|.++.++++....++.. .+.+..|....+|.++||+|+.||+.-+
T Consensus 215 thlfiR~~kvLR~-FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L 292 (478)
T KOG0405|consen 215 THLFIRQEKVLRG-FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGL 292 (478)
T ss_pred eEEEEecchhhcc-hhHHHHHHHHHHhhhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccc
Confidence 9999999999988 8999999999999999999999999999998666644 4455566556699999999999999755
Q ss_pred ---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC
Q 012545 296 ---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL 371 (461)
Q Consensus 296 ---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 371 (461)
+.++.. .+|.|.||++.+||+|+||++||+++-- .....|..+|+..++.+++... ....+|..+
T Consensus 293 ~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~-~~kldY~nV 361 (478)
T KOG0405|consen 293 NLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGK-DTKLDYENV 361 (478)
T ss_pred cchhcceeeCCCCCEEEeccccCCCCceEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCC-CCccccccC
Confidence 456666 6899999999999999999999999864 4567788999999999998532 235899999
Q ss_pred CeEEEecCCcceEEccCCC-------C--c-EEEecCCccc------cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 372 PYFYSRAFDLSWQFYGDNV-------G--D-TVLFGDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 372 p~~~~~~~~~~~~~~g~~~-------~--~-~~~~~~~~~~------~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
|..++.++....+ |+++ | + .++...+.+- .....++|+.+ ++.+++|+|++|..+.| ++
T Consensus 362 p~vVFshP~igtV--GLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQ 439 (478)
T KOG0405|consen 362 PCVVFSHPPIGTV--GLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQ 439 (478)
T ss_pred ceEEEecCCcccc--cCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHh
Confidence 9999888887666 5544 1 1 2333333322 22345677776 89999999999999888 59
Q ss_pred HHHHHHHcCCCCCChhhhhcc
Q 012545 433 AIAKVARVQPSVESLDVLKNE 453 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~ 453 (461)
.++.++.++.|..|+++-..-
T Consensus 440 Gf~VAvKmGaTKadFD~tVaI 460 (478)
T KOG0405|consen 440 GFAVAVKMGATKADFDSTVAI 460 (478)
T ss_pred hhhhheecCcchhhhccceee
Confidence 999999999999998864433
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=319.68 Aligned_cols=397 Identities=23% Similarity=0.288 Sum_probs=294.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CC-CCcccccccCCCCCCCCC------CceeecC---
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YE-RPALSKAYLFPEGTARLP------GFHVCVG--- 71 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~-~~~~~~~~~~~~~~~~~~------~~~~~~~--- 71 (461)
.||++|||+||+|..||...++.|++ -+.+|++.... .. .|-+||.++..++..+.. ......+
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 59999999999999999999999998 68899976532 11 344567776655321110 0000000
Q ss_pred CC--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCcccccccccc
Q 012545 72 SG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 72 ~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.+ ....+...+++++++++.+ .-.-+++..-.+...+| ..+.++++|+|||+.- ++.||++
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV--~~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV--TPFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCcc--CCCCCeE
Confidence 00 0112344566788888887 33334443333444454 4689999999999965 2223321
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
.+.+.+.++.....+.. -|++++|+|+|++|+|++....++|.+
T Consensus 193 ----------------------------IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGse 236 (506)
T KOG1335|consen 193 ----------------------------IDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSE 236 (506)
T ss_pred ----------------------------ecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCe
Confidence 23445555555444444 489999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCC
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p 290 (461)
||+++..+.+.+. +|.++++.+++.|++.|++|+++++|...+.+.+|. ..+.+.+ + ++++||.+++++|++|
T Consensus 237 VT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~-v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 237 VTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGP-VEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred EEEEEehhhhccc-cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCc-eEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 9999999999988 899999999999999999999999999999877764 3455433 3 4799999999999999
Q ss_pred Chhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCccc
Q 012545 291 LISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 366 (461)
Q Consensus 291 ~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 366 (461)
-+.-+ +.++.. ..+.+.||+.++|.+|+||++||++..|+. ...|..||..+.+.|.+.. ...
T Consensus 315 ~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~---~hv 381 (506)
T KOG1335|consen 315 FTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGH---GHV 381 (506)
T ss_pred cccCCChhhcccccccccceeccccccccCCceEEecccCCcchh----------hhhhhhhchhheeeecccC---ccc
Confidence 88755 345555 578999999999999999999999999854 5667789999988888754 248
Q ss_pred CCCCCCeEEEecCCcceEEccCCC----CcEEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-H
Q 012545 367 GYDYLPYFYSRAFDLSWQFYGDNV----GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-N 431 (461)
Q Consensus 367 ~~~~~p~~~~~~~~~~~~~~g~~~----~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~ 431 (461)
.|+.+|.+.++.++++|++..+.. |..+..+.++ .+ ...++|.|+.. +++||||+||+|+++.| +
T Consensus 382 ~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli 461 (506)
T KOG1335|consen 382 DYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELI 461 (506)
T ss_pred ccCCCCceeecccceeeeccchhhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHH
Confidence 899999999999999999443221 3334333332 11 34678888777 78999999999999999 5
Q ss_pred HHHHHHHHcCCCCCChhhhhccCCCcc
Q 012545 432 KAIAKVARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
+....+|..+.+.+|....--+.+++-
T Consensus 462 ~EA~lAieyGasaeDvarvchaHPTlS 488 (506)
T KOG1335|consen 462 HEASLAIEYGASAEDVARVCHAHPTLS 488 (506)
T ss_pred HHHHHHHHhCccHHHHhhccCCCCcHH
Confidence 888889999999999887766665543
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=329.90 Aligned_cols=310 Identities=25% Similarity=0.365 Sum_probs=248.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
++++||||||++|+.+|..|.+.. ++.+|+|||+..++.|. |.+..... ..++. ......+...++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~-----g~l~~------~~i~~p~~~~~~~ 69 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVAT-----GTLSE------SEIAIPLRALLRK 69 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhc-----CCCCh------hheeccHHHHhcc
Confidence 679999999999999999999975 35669999999988775 22211111 11100 0112345666664
Q ss_pred cC-cEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KG-IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~-v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.+ ++++++ +|++||+++++|.+.++..+.||+||+|+|+.+..+.+||+++
T Consensus 70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E--------------------------- 121 (405)
T COG1252 70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAE--------------------------- 121 (405)
T ss_pred cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHH---------------------------
Confidence 54 999998 9999999999999999778999999999999997666666543
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHh-------cCC----CcEEEECCCHHHHHHHHHHHHC-------------CCcEEEE
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKA-------KKN----GKAVVVGGGYIGLELSAALKIN-------------NIDVSMV 219 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~-------~~~----~~v~VvG~G~~g~e~a~~l~~~-------------g~~Vtli 219 (461)
..+.+++++++.+++.++.. .+. .+++|+|+|++|+|+|.+|.++ ..+|+++
T Consensus 122 ----~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LV 197 (405)
T COG1252 122 ----YAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILV 197 (405)
T ss_pred ----hCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEE
Confidence 34567789999988887751 112 2699999999999999998764 1389999
Q ss_pred ccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc-EEecCEEEEccCCCCChhhhh-c
Q 012545 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLISLFK-G 297 (461)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-~i~aD~vi~a~G~~p~~~~~~-~ 297 (461)
++.+++++. +++++++..++.|++.||++++++.|++++. + .|++++|. ++++|.+|||+|.+++...-+ .
T Consensus 198 ea~p~ILp~-~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~ 270 (405)
T COG1252 198 EAGPRILPM-FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVRASPLLKDLS 270 (405)
T ss_pred ccCchhccC-CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCcCChhhhhcC
Confidence 999999997 8999999999999999999999999999986 3 58888887 499999999999999886655 3
Q ss_pred cccc-CCCcEEeCCCCCC-CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCC
Q 012545 298 QVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY 370 (461)
Q Consensus 298 ~~~~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 370 (461)
+.+. ..|++.||++||+ ++|+|||+|||+..... ...++..+.|.+||..+|+||.....|++..+|.+
T Consensus 271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y 341 (405)
T COG1252 271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKY 341 (405)
T ss_pred hhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 5554 4699999999998 99999999999987753 12237788999999999999999888877666655
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=325.72 Aligned_cols=301 Identities=21% Similarity=0.276 Sum_probs=232.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
.+++|||||||+||+.+|..|.+.+. +|+|||+++++.|. |++... .... ..... ....+...+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~~-~~g~--~~~~~--------~~~~~~~~~~ 73 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQT-TTGT--LEFRS--------ICEPVRPALA 73 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHHh-cccC--CChHH--------hHHHHHHHhc
Confidence 46799999999999999998865444 49999999887664 433221 1110 00000 0012334455
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEc----------CCCcEEecCEEEEccCCCccccccccccccCccccccccCCccccc
Q 012545 84 EKGIELILSTEIVRADIASKTLLS----------ATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQV 153 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~----------~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~ 153 (461)
..+++++.+ +|+.||++++.|.+ .++.++.||+||||||+.+..|.+||..
T Consensus 74 ~~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~------------------ 134 (424)
T PTZ00318 74 KLPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVE------------------ 134 (424)
T ss_pred cCCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHH------------------
Confidence 678888886 99999999999887 4566899999999999999655555532
Q ss_pred ccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHH-------
Q 012545 154 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKI------- 211 (461)
Q Consensus 154 ~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~---------------~~~~v~VvG~G~~g~e~a~~l~~------- 211 (461)
..++.+++++++.++++.+... ..++++|||+|++|+|+|..|..
T Consensus 135 -------------e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~ 201 (424)
T PTZ00318 135 -------------ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVR 201 (424)
T ss_pred -------------HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 2355667788887777665321 12489999999999999999876
Q ss_pred -------CCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEE
Q 012545 212 -------NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 212 -------~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
.+.+|+++++.+.+++. +++++.+.+++.|++.||+++++++|+++.. + .+.+++|+++++|.+|+
T Consensus 202 ~~~~~~~~~~~Vtlv~~~~~ll~~-~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~ 274 (424)
T PTZ00318 202 NLNPELVEECKVTVLEAGSEVLGS-FDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVW 274 (424)
T ss_pred hhhhcccccCEEEEEcCCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEE
Confidence 37899999999999986 8999999999999999999999999999974 2 47788999999999999
Q ss_pred ccCCCCChhhhhccccc-CCCcEEeCCCCC-CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 285 GVGGRPLISLFKGQVAE-NKGGIETDDFFK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 285 a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~-t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
++|.+|+..+...++.. ++|+|.||++|| |++|||||+|||+..+... ..+.+..|..||+++|+||.+...+
T Consensus 275 ~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~-----~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 275 STGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERP-----LPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred ccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCC-----CCCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999985333445555 579999999999 5999999999999864321 1257888999999999999987655
Q ss_pred C
Q 012545 363 K 363 (461)
Q Consensus 363 ~ 363 (461)
+
T Consensus 350 ~ 350 (424)
T PTZ00318 350 K 350 (424)
T ss_pred C
Confidence 4
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=310.59 Aligned_cols=305 Identities=22% Similarity=0.307 Sum_probs=234.9
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
+|||||||+||+.+|..|+++..+..+|+|||+++.+.|... ++. +..... .. .+......+++++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~-~~~g~~--~~--------~~~~~~~~~~~~~~g 68 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPG-MIAGHY--SL--------DEIRIDLRRLARQAG 68 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhH-HHheeC--CH--------HHhcccHHHHHHhcC
Confidence 589999999999999999765334567999999988777632 211 111100 00 001123456777889
Q ss_pred cEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCC
Q 012545 87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADA 166 (461)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 166 (461)
++++.+ +|..+|++++.|.+.++++++||+||||||+.+..|.+||. .
T Consensus 69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~-------------------------------~ 116 (364)
T TIGR03169 69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGA-------------------------------A 116 (364)
T ss_pred CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCCcc-------------------------------c
Confidence 999887 89999999999999999889999999999999965544442 3
Q ss_pred CCEEEeCCHHHHHHHHHHHHh-----cCCCcEEEECCCHHHHHHHHHHHH----CC--CcEEEEccCCccCCcccCHHHH
Q 012545 167 KNIFYLREIDDADKLVEAIKA-----KKNGKAVVVGGGYIGLELSAALKI----NN--IDVSMVYPEPWCMPRLFTADIA 235 (461)
Q Consensus 167 ~~v~~~~~~~~~~~l~~~l~~-----~~~~~v~VvG~G~~g~e~a~~l~~----~g--~~Vtli~~~~~~~~~~~~~~~~ 235 (461)
++++.+++++++.+..+.+.. ...++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++. +++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~ 194 (364)
T TIGR03169 117 DLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVR 194 (364)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHH
Confidence 456677787777764433321 135799999999999999999975 34 589999 56677765 789999
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCC
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT 314 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t 314 (461)
+.+.+.|++.||++++++++++++. + .+.+.+|+++++|.+|+|+|.+|+..+...++.. ++|+|.||+++||
T Consensus 195 ~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~ 268 (364)
T TIGR03169 195 RLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQS 268 (364)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCcccc
Confidence 9999999999999999999999853 2 5778889999999999999999997666666665 5799999999998
Q ss_pred -CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCC
Q 012545 315 -SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGY 368 (461)
Q Consensus 315 -~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 368 (461)
++|+|||+|||+..+.... .+....|..||+++|+||.....+.+...|
T Consensus 269 ~~~~~Iya~GD~~~~~~~~~-----~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~ 318 (364)
T TIGR03169 269 LSHPHVFAAGDCAVITDAPR-----PKAGVYAVRQAPILAANLRASLRGQPLRPF 318 (364)
T ss_pred CCCCCEEEeeeeeecCCCCC-----CCchHHHHHhHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999997643211 145778999999999999987766544444
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=285.48 Aligned_cols=288 Identities=22% Similarity=0.269 Sum_probs=209.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceee-cCCCCCCCCHhHHHH
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKE 84 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (461)
|||+|||||+||++||..|++.|++ |+|+|+++... .+........+|.+... .+......+.+.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPGG--------QLTTTTEVENYPGFPEGISGPELMEKMKEQAVK 69 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCCc--------ceeecccccccCCCCCCCChHHHHHHHHHHHHH
Confidence 6999999999999999999999987 99999886211 11111111222322210 011112345566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
++++++. ++|..++.+.+ .+.+.++.++.||++|+|||+.|..|.+||...+
T Consensus 70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~------------------------- 123 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEF------------------------- 123 (300)
T ss_pred cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhc-------------------------
Confidence 8999998 69999988765 4566677789999999999999976666664210
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
....++....... . . .++++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+.. . ..+.+.+
T Consensus 124 --~~~~~~~~~~~~~-~-----~--~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l 186 (300)
T TIGR01292 124 --LGRGVSYCATCDG-P-----F--FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRL 186 (300)
T ss_pred --CCccEEEeeecCh-h-----h--cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHH
Confidence 0122332222211 0 1 1478999999999999999999999999999999876532 2 3445666
Q ss_pred Hhc-CcEEEcCCcEEEEEecCCCCEEEEEeC---C--CcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCCC
Q 012545 243 ANK-GIKIIKGTVAVGFTTNADGEVKEVKLK---D--GRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTS 315 (461)
Q Consensus 243 ~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~---~--G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~ 315 (461)
++. ||++++++.++++.. ++.+..+++. + ++++++|.+|+|+|++|+.++++..+.. .+|++.||++++|+
T Consensus 187 ~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~ 264 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVG--DNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTS 264 (300)
T ss_pred HhCCCeEEEeccEEEEEEc--cCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccC
Confidence 777 999999999999986 3344455542 2 3579999999999999999887655444 57899999999999
Q ss_pred CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 316 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 316 ~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
+|+|||+|||+.... +.+..|..||+.||.+|..
T Consensus 265 ~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 265 VPGVFAAGDVRDKGY---------RQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCCEEEeecccCcch---------hhhhhhhhhHHHHHHHHHh
Confidence 999999999998421 5688999999999999874
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=290.60 Aligned_cols=298 Identities=20% Similarity=0.189 Sum_probs=213.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeec-CCCCCCCCHhH
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEW 81 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (461)
++.+||+||||||||++||..|+++|++ ++++|+....+. +.......++|+..... +......+.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQ--------LTTTTEVENWPGDPNDLTGPLLMERMHEH 72 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCc--------eecCceECCCCCCCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999999986 899986532211 11111112222211100 00011233445
Q ss_pred HHHcCcEEEcCCeEEEEeCCCCEEEcC-CCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCC
Q 012545 82 YKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFG 160 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (461)
...+++++..+ .+..++...+.+.+. +...+.||+||+|||+.|..|++||..++
T Consensus 73 ~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~----------------------- 128 (321)
T PRK10262 73 ATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAF----------------------- 128 (321)
T ss_pred HHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHc-----------------------
Confidence 55677777776 677788766664432 23368999999999999977766664320
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
....++....+.... ..+++++|+|+|++|+|+|..|++.+.+|+++++.+.+. .++.+.+.+.+
T Consensus 129 ----~~~~v~~~~~~~~~~--------~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~ 193 (321)
T PRK10262 129 ----KGRGVSACATCDGFF--------YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMD 193 (321)
T ss_pred ----CCCcEEEeecCCHHH--------cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHh
Confidence 112233332222211 158899999999999999999999999999999987653 35677888899
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC------cEEecCEEEEccCCCCChhhhhcccccCCCcEEeCC----
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD---- 310 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G------~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~---- 310 (461)
.|++.||++++++.++++..+ ++.+..+++.++ +++++|.|++++|++||..+++.++..++|+|.||+
T Consensus 194 ~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~ 272 (321)
T PRK10262 194 KVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHG 272 (321)
T ss_pred hccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcc
Confidence 999999999999999999862 334445665432 479999999999999999988766666778999997
Q ss_pred -CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 311 -FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 311 -~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++||++|+|||+|||++.+. +++..|..+|..||..|...+
T Consensus 273 ~~~~t~~~~VyA~GD~~~~~~---------~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 273 NATQTSIPGVFAAGDVMDHIY---------RQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred cccccCCCCEEECeeccCCCc---------ceEEEEehhHHHHHHHHHHHH
Confidence 78999999999999997543 344457788999888887654
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=271.24 Aligned_cols=396 Identities=21% Similarity=0.268 Sum_probs=268.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CC-------CCcccccccCCCCC-----CCCCCce
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YE-------RPALSKAYLFPEGT-----ARLPGFH 67 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~-------~~~~~~~~~~~~~~-----~~~~~~~ 67 (461)
..||++|||||.+||+||.+++..|.+ |.++|--...| |. -.|++|.+++.... +....+.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~k---V~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAK---VACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCc---EEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 469999999999999999999999987 88877533211 21 12444544443211 1111111
Q ss_pred eecCCCCCCCCHhHH-H-------H----cCcEEEcCCeEEEEe-----CCCCEEEc--CCC--cEEecCEEEEccCCCc
Q 012545 68 VCVGSGGERLLPEWY-K-------E----KGIELILSTEIVRAD-----IASKTLLS--ATG--LIFKYQILVIATGSTV 126 (461)
Q Consensus 68 ~~~~~~~~~~~~~~~-~-------~----~~v~~~~~~~v~~i~-----~~~~~v~~--~~~--~~~~~d~liiAtG~~~ 126 (461)
+...........+.+ + . +++.+... .|.-++ .+.+++.. .++ +.+.+++++||||.+|
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreK-kV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREK-KVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccc-eeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence 211111111111111 1 1 11222111 222221 12222222 223 3578999999999999
Q ss_pred cccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHH
Q 012545 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 206 (461)
Q Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a 206 (461)
.-|+|||..++ +..++.+|++.. .|.+-+|||+|++++|+|
T Consensus 174 rYp~IpG~~Ey-------------------------~ITSDDlFsl~~--------------~PGkTLvVGa~YVaLECA 214 (503)
T KOG4716|consen 174 RYPDIPGAKEY-------------------------GITSDDLFSLPY--------------EPGKTLVVGAGYVALECA 214 (503)
T ss_pred CCCCCCCceee-------------------------eecccccccccC--------------CCCceEEEccceeeeehh
Confidence 88888886541 111222333221 467788999999999999
Q ss_pred HHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CC--cEEecCE
Q 012545 207 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADI 281 (461)
Q Consensus 207 ~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G--~~i~aD~ 281 (461)
.+|+..|.+||++.|+- ++.. ||.++++.+.+.|+++||+|.....+.+++.-++++. .|..+ .+ -+-++|.
T Consensus 215 gFL~gfg~~vtVmVRSI-~LrG-FDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydT 291 (503)
T KOG4716|consen 215 GFLKGFGYDVTVMVRSI-LLRG-FDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDT 291 (503)
T ss_pred hhHhhcCCCcEEEEEEe-eccc-ccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhh
Confidence 99999999999998853 4444 9999999999999999999999888888887666652 33222 12 2457899
Q ss_pred EEEccCCCCChhhh---hccccc--CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHH
Q 012545 282 VVVGVGGRPLISLF---KGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 356 (461)
Q Consensus 282 vi~a~G~~p~~~~~---~~~~~~--~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 356 (461)
|+||+|+.+.++-+ ..++.. ..|.|.||+.-+||+|+|||+||+..... +....|.++|+..|+.+
T Consensus 292 Vl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rl 362 (503)
T KOG4716|consen 292 VLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRL 362 (503)
T ss_pred hhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHH
Confidence 99999999998754 345555 56889999999999999999999997643 56778999999999999
Q ss_pred hcccCCCcccCCCCCCeEEEecCCcceEEccCCC-------Cc---EEEecCCccc-------cCCCcEEEEEE---eCC
Q 012545 357 MATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GD---TVLFGDNDLA-------SATHKFGTYWI---KDG 416 (461)
Q Consensus 357 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~---~~~~~~~~~~-------~~~~~~~~~~~---~~~ 416 (461)
.+... ....|..+|..+++.+++... |+++ |+ .+..+-+.|. +....|.|... .+.
T Consensus 363 f~gs~--q~~dy~~V~TTVFTPLEy~c~--GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~q 438 (503)
T KOG4716|consen 363 FAGST--QLMDYDDVATTVFTPLEYGCV--GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQ 438 (503)
T ss_pred hcCcc--eeeeccCCceeeecchhcccc--CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCc
Confidence 97653 358899999988888877655 4443 22 2222222222 22334555554 578
Q ss_pred EEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcc
Q 012545 417 KVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 417 ~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
||+|.|++|++++| ++.++.+++.+++..+|+....-.+..+
T Consensus 439 kv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~a 481 (503)
T KOG4716|consen 439 KVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTA 481 (503)
T ss_pred eEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccch
Confidence 99999999999999 6999999999999999887665554443
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=277.09 Aligned_cols=405 Identities=23% Similarity=0.366 Sum_probs=306.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCC--CceeecCCCCCC-------
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP--GFHVCVGSGGER------- 76 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 76 (461)
.-.+|||+|.+..+++...+.. ..++.|.+|..++..||.||++++-+|+...+.... .|..|.+.+...
T Consensus 179 vp~liigggtaAfaa~rai~s~-da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~F 257 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSN-DATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGF 257 (659)
T ss_pred CceeEEcCCchhhhcccccccC-CCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcc
Confidence 4579999999887776665553 346679999999999999999999999887554321 233333332211
Q ss_pred --CCHh--HHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccc
Q 012545 77 --LLPE--WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQ 152 (461)
Q Consensus 77 --~~~~--~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~ 152 (461)
...+ ...+-||-+..+..|..++...+.|.+.||.++.||+++||||.+|
T Consensus 258 fvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~P-------------------------- 311 (659)
T KOG1346|consen 258 FVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRP-------------------------- 311 (659)
T ss_pred eeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCc--------------------------
Confidence 1111 1234589999999999999999999999999999999999999999
Q ss_pred cccccCCCCCC-CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccCCccCC
Q 012545 153 VLRLTDFGVEG-ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMP 227 (461)
Q Consensus 153 ~~~~~~~~~~g-~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~~ 227 (461)
+.++-+.-.+ .....+..++.+.|+.++.+.+.. .++|.|||+|++|.|+|..|.+. |.+|+-+......+.
T Consensus 312 -k~l~~~~~A~~evk~kit~fr~p~DF~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~ 388 (659)
T KOG1346|consen 312 -KKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME 388 (659)
T ss_pred -ccchhhhhcCHHhhhheeEEecchHHHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh
Confidence 3433321111 224568888999999999888875 48999999999999999999874 678988888888788
Q ss_pred cccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc--CCC
Q 012545 228 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE--NKG 304 (461)
Q Consensus 228 ~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~--~~g 304 (461)
..+++.++++-.+.+++.||.++.+..|.++...... ..+.++||.++..|+||+|+|-.||++++.. +++. .-|
T Consensus 389 kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lG 466 (659)
T KOG1346|consen 389 KILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLG 466 (659)
T ss_pred hhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccC
Confidence 8889999999999999999999999999998763333 4688999999999999999999999999965 4555 568
Q ss_pred cEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEec-CCcce
Q 012545 305 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSW 383 (461)
Q Consensus 305 ~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~ 383 (461)
++.||..|+. ..|||++||++.+.+...|. +|..++.+|.-.|+.|..||.+.. .+|....+||+.. +++.+
T Consensus 467 GfrvnaeL~a-r~NvwvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENMtgAa-----kpy~hqsmFWsdlgP~igy 539 (659)
T KOG1346|consen 467 GFRVNAELKA-RENVWVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENMTGAA-----KPYKHQSMFWSDLGPEIGY 539 (659)
T ss_pred cEEeeheeec-ccceeeecchhhhhcccccc-eeccccccceeeceeccccccccc-----CCccccceeeeccCccccc
Confidence 9999999987 67999999999998876664 566899999999999999999865 6777788888754 34444
Q ss_pred EEccCCCC--cEE-E---------------ecCC-----------------cc--------ccCCCcE---EEEEEeCCE
Q 012545 384 QFYGDNVG--DTV-L---------------FGDN-----------------DL--------ASATHKF---GTYWIKDGK 417 (461)
Q Consensus 384 ~~~g~~~~--~~~-~---------------~~~~-----------------~~--------~~~~~~~---~~~~~~~~~ 417 (461)
..+|.-.. ..+ . ..+. .+ ..+...| +.||++|++
T Consensus 540 eaIGlvDSSLpTVgVfA~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~ 619 (659)
T KOG1346|consen 540 EAIGLVDSSLPTVGVFALPSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDK 619 (659)
T ss_pred ceeeecccCCCcceeeeccccccchhhhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCc
Confidence 44442210 000 0 0000 00 0111223 347789999
Q ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCChhhh
Q 012545 418 VVGVFLESGTPEENKAIAKVARVQPSVESLDVL 450 (461)
Q Consensus 418 i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 450 (461)
|+|+.++.-- .++.....+|..+...+|+..+
T Consensus 620 iVGilLwN~F-nr~~~AR~II~d~kk~ddlnEv 651 (659)
T KOG1346|consen 620 IVGILLWNLF-NRIGLARTIINDNKKYDDLNEV 651 (659)
T ss_pred EEEEEehhhh-ccchhhHHHhccccchhhHHHH
Confidence 9999998633 4678888888888877776644
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=304.03 Aligned_cols=293 Identities=20% Similarity=0.267 Sum_probs=211.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+||||||||++||..|++.|++ |+|+++..-.. +.......++.......+......+.+.++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~GG~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 278 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERIGGQ---------VKDTVGIENLISVPYTTGSQLAANLEEHIK 278 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCc---------cccCcCcccccccCCCCHHHHHHHHHHHHH
Confidence 359999999999999999999999987 99997531100 000001111111111111112234456667
Q ss_pred HcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCC
Q 012545 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV 161 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (461)
+++++++.+++|..++.+.+ .+.+.+++.+.||++|+|||+.+..|.+||..+
T Consensus 279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~------------------------- 333 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKE------------------------- 333 (515)
T ss_pred HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHH-------------------------
Confidence 78999999989999986653 466677778999999999999986666665321
Q ss_pred CCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHH
Q 012545 162 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 241 (461)
Q Consensus 162 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~ 241 (461)
.....++.....+.. + ..+++++|+|+|++|+|+|..|+..+.+|+++++.+.+.. .+.+.+.
T Consensus 334 --~~~~~v~~~~~~~~~------~--~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~ 396 (515)
T TIGR03140 334 --YIGKGVAYCPHCDGP------F--FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDK 396 (515)
T ss_pred --cCCCeEEEeeccChh------h--cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHH
Confidence 011234433222211 1 1578999999999999999999999999999998776532 2345666
Q ss_pred HHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCC
Q 012545 242 YAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT 314 (461)
Q Consensus 242 l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t 314 (461)
+++ .||++++++.++++.. +++.+..|++.+ | +++++|.|++++|++|++++++..+.. .+|+|.||+++||
T Consensus 397 l~~~~gV~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~T 475 (515)
T TIGR03140 397 LKSLPNVDILTSAQTTEIVG-DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRT 475 (515)
T ss_pred HhcCCCCEEEECCeeEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCC
Confidence 766 6999999999999986 335555676653 2 469999999999999999988655554 5689999999999
Q ss_pred CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 315 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 315 ~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++|+|||+|||+..+. +++..|..+|..||.++...+
T Consensus 476 s~p~IyAaGDv~~~~~---------~~~~~A~~~G~~Aa~~i~~~~ 512 (515)
T TIGR03140 476 SVPGIFAAGDVTTVPY---------KQIIIAMGEGAKAALSAFDYL 512 (515)
T ss_pred CCCCEEEcccccCCcc---------ceEEEEEccHHHHHHHHHHHH
Confidence 9999999999998654 244567889999999887643
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=298.79 Aligned_cols=293 Identities=23% Similarity=0.273 Sum_probs=205.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhH
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
|.+.|||+||||||||++||..|++.|++ |+|+|++..... +........++++....+......+...
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~~GG~--------~~~~~~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDDFGGQ--------ITITSEVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCce--------EEeccccccCCCCcCCCHHHHHHHHHHH
Confidence 45679999999999999999999999887 999999753211 1111111122222111111111233445
Q ss_pred HHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
+++.+++++. ++|+.++.+.+ .+.+.++ .+.|+++|+|||++|..|.+||...
T Consensus 70 ~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~----------------------- 124 (555)
T TIGR03143 70 AQDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEE----------------------- 124 (555)
T ss_pred HHHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHH-----------------------
Confidence 5678999864 58888887654 3555555 5899999999999997666666421
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
.....++++...+.. + ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ..... .
T Consensus 125 ----~~~~~v~~~~~~~~~------~--~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~ 186 (555)
T TIGR03143 125 ----FTGRGVAYCATCDGE------F--FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---E 186 (555)
T ss_pred ----hCCceEEEEeecChh------h--cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---H
Confidence 012334443332211 0 1578999999999999999999999999999999886532 33222 3
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEEEE---eCCCcEE----ecCE----EEEccCCCCChhhhhccccc-CCCcEE
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGRTL----EADI----VVVGVGGRPLISLFKGQVAE-NKGGIE 307 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~~i----~aD~----vi~a~G~~p~~~~~~~~~~~-~~g~i~ 307 (461)
+.++..||++++++.|+++.. ++.+..+. ..+|++. ++|. |++++|++|++.+++.++.. .+|+|.
T Consensus 187 ~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~ 264 (555)
T TIGR03143 187 KVKNHPKIEVKFNTELKEATG--DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIP 264 (555)
T ss_pred HHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEE
Confidence 334557999999999999985 44433333 3456543 3676 99999999999998876665 478999
Q ss_pred eCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 308 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 308 vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
||+++||+.|+|||+|||+.... ..+..|..||+.||.+|...
T Consensus 265 vd~~~~Ts~p~IyAaGDv~~~~~---------~~v~~A~~~G~~Aa~~i~~~ 307 (555)
T TIGR03143 265 TNEDMETNVPGVYAAGDLRPKEL---------RQVVTAVADGAIAATSAERY 307 (555)
T ss_pred eCCccccCCCCEEEceeccCCCc---------chheeHHhhHHHHHHHHHHH
Confidence 99999999999999999985321 35678999999999998543
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=272.21 Aligned_cols=290 Identities=22% Similarity=0.280 Sum_probs=220.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCcee-ecCCCCCCCCHhHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWY 82 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (461)
+.+||+|||||||||+||.++.+.+++. ++|+|+.....+ +.......++|++.. ..+........+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~gg~--------~~~~~~venypg~~~~~~g~~L~~~~~~~a 71 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPGGQ--------LTKTTDVENYPGFPGGILGPELMEQMKEQA 71 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcCCc--------cccceeecCCCCCccCCchHHHHHHHHHHH
Confidence 4799999999999999999999998773 566666543211 111114466676665 33333444555666
Q ss_pred HHcCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCC
Q 012545 83 KEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFG 160 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (461)
...++++.. ..+..++... ..|.++++. ++++++|||||..+..|.+||..
T Consensus 72 ~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~------------------------- 124 (305)
T COG0492 72 EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEE------------------------- 124 (305)
T ss_pred hhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcch-------------------------
Confidence 678899888 4888888764 567777777 99999999999999655554321
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
.....+|+++..++. .+ ++++|+|+|+|.+++|.|..|.+.+.+|+++.|.+.+.. .+.+.+
T Consensus 125 --e~~g~gv~yc~~cdg--~~-------~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~ 186 (305)
T COG0492 125 --EFEGKGVSYCATCDG--FF-------KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVE 186 (305)
T ss_pred --hhcCCceEEeeecCc--cc-------cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHH
Confidence 122356777766554 22 578999999999999999999999999999999987654 234445
Q ss_pred HHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCC----cEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCC
Q 012545 241 YYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT 314 (461)
Q Consensus 241 ~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G----~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t 314 (461)
.++++ +|++++++.+.++.. ++ +..|++++. +.+.+|-+++++|..|++.+++..... ++|+|.||+.++|
T Consensus 187 ~l~~~~~i~~~~~~~i~ei~G--~~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~T 263 (305)
T COG0492 187 RLKKNVKIEVLTNTVVKEILG--DD-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMET 263 (305)
T ss_pred HHHhcCCeEEEeCCceeEEec--Cc-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCccc
Confidence 55555 899999999999987 33 567777763 278999999999999999988765444 7899999999999
Q ss_pred CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 315 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 315 ~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
|+|+||||||++..+. +++..|..+|..||.++....
T Consensus 264 svpGifAaGDv~~~~~---------rqi~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 264 SVPGIFAAGDVADKNG---------RQIATAAGDGAIAALSAERYL 300 (305)
T ss_pred CCCCEEEeEeeccCcc---------cEEeehhhhHHHHHHHHHHHh
Confidence 9999999999998864 356778889999988877543
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=295.92 Aligned_cols=292 Identities=22% Similarity=0.267 Sum_probs=214.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+||||||||++||.+|++.|++ |+|+++..-.. +........++.+....+......+.+.+++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 278 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQ---------VLDTMGIENFISVPETEGPKLAAALEEHVKE 278 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCe---------eeccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999988 99998641110 1101111122222221222223345666778
Q ss_pred cCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 85 KGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
++++++.++++..++.+. ..+.+.+++++.||++|+|||+++..|.+||.+++
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~------------------------- 333 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEY------------------------- 333 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHh-------------------------
Confidence 899999998999998764 35666778789999999999999966666664320
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
....++.....+... .++++|+|||+|++|+|+|..|+..+.+|+++++.+.+.. + +.+.+.+
T Consensus 334 --~~~~v~~~~~~~~~~--------~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l 396 (517)
T PRK15317 334 --RNKGVAYCPHCDGPL--------FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKL 396 (517)
T ss_pred --cCceEEEeeccCchh--------cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHH
Confidence 112333332221110 1578999999999999999999999999999998876532 2 3445556
Q ss_pred Hh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCCC
Q 012545 243 AN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTS 315 (461)
Q Consensus 243 ~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~ 315 (461)
.+ .||++++++.++++.. +++.+..+++.+ | +++++|.+++++|++||+++++..+.. .+|+|.||+++||+
T Consensus 397 ~~~~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts 475 (517)
T PRK15317 397 RSLPNVTIITNAQTTEVTG-DGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATS 475 (517)
T ss_pred hcCCCcEEEECcEEEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCC
Confidence 55 6999999999999986 346666666643 3 369999999999999999988655555 56899999999999
Q ss_pred CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 316 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 316 ~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+|+|||+|||+..+. +++..|..+|..||.++...+
T Consensus 476 ~p~IyAaGDv~~~~~---------k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 476 VPGVFAAGDCTTVPY---------KQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred CCCEEECccccCCCC---------CEEEEhhhhHHHHHHHHHHHH
Confidence 999999999998754 456778899999999987654
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=288.93 Aligned_cols=286 Identities=20% Similarity=0.240 Sum_probs=205.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+|||||+||++||..|++.|++ |+|+|+++.... .+.. .++.+.. ..+......+.++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~GG--------~l~~----gip~~~~--~~~~~~~~~~~l~ 194 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPGG--------VVTY----GIPEFRL--PKEIVVTEIKTLK 194 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCCc--------Eeee----cCCCccC--CHHHHHHHHHHHH
Confidence 468999999999999999999999987 999999864211 1100 0111000 0001122345677
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCC-CccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
+.|++++.++.+ .+.+.+.+.. ..||+||+|||+ .|.. ++ +|
T Consensus 195 ~~gv~~~~~~~v------~~~v~~~~~~-~~yd~viiAtGa~~p~~---------------------------~~---ip 237 (449)
T TIGR01316 195 KLGVTFRMNFLV------GKTATLEELF-SQYDAVFIGTGAGLPKL---------------------------MN---IP 237 (449)
T ss_pred hCCcEEEeCCcc------CCcCCHHHHH-hhCCEEEEeCCCCCCCc---------------------------CC---CC
Confidence 889999998643 2344444332 579999999998 5732 22 56
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHH-------hcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIK-------AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA 235 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~-------~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~ 235 (461)
|.+.+++++..++.+...+..... ...+++|+|||+|++|+|+|..+.+.|.+|+++.+.++.-.. ..
T Consensus 238 G~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~-~~---- 312 (449)
T TIGR01316 238 GEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT-AR---- 312 (449)
T ss_pred CCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC-CC----
Confidence 666677777665544333221110 124689999999999999999999999999999987652111 11
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------CC-----------cEEecCEEEEccCCCCChhhh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~G-----------~~i~aD~vi~a~G~~p~~~~~ 295 (461)
....+.+++.||++++++.++++..+++|++..|++. +| +++++|.||+|+|+.|+..++
T Consensus 313 ~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l 392 (449)
T TIGR01316 313 VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMA 392 (449)
T ss_pred HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhh
Confidence 2233567889999999999999986556666666553 33 269999999999999999877
Q ss_pred hc-cccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 296 KG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 296 ~~-~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
+. ++.. .+|+|.||+++||+.|+|||+|||+..+ ..+..|..+|+.||.+|..
T Consensus 393 ~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 393 ETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA----------ATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred hccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence 54 4655 5789999999999999999999999754 4678999999999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=285.70 Aligned_cols=290 Identities=22% Similarity=0.237 Sum_probs=207.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+||||||||++||..|+++|++ |+|+|+++... +++. ..+|.+... .........++++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~l~-~~~~~~~~~~~~~ 202 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPG--------GVLV----YGIPEFRLP-KETVVKKEIENIK 202 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCC--------Ceee----ecCCCccCC-ccHHHHHHHHHHH
Confidence 368999999999999999999999987 99999876421 1110 011111100 0001123346778
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCC-cEEecCEEEEccCC-CccccccccccccCccccccccCCcccccccccCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS-TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV 161 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~liiAtG~-~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (461)
+.|++++.++.+ .+.+.+.+. +.+.||+||||||+ .| +.++ +
T Consensus 203 ~~gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~---------------------------~~l~---i 246 (464)
T PRK12831 203 KLGVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLP---------------------------KFMG---I 246 (464)
T ss_pred HcCCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCC---------------------------CCCC---C
Confidence 899999998754 223333332 23579999999998 56 3333 6
Q ss_pred CCCCCCCEEEeCCHHHHHHHHHHH------HhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-cCCcccCHHH
Q 012545 162 EGADAKNIFYLREIDDADKLVEAI------KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADI 234 (461)
Q Consensus 162 ~g~~~~~v~~~~~~~~~~~l~~~l------~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~~~~~~~~~ 234 (461)
||.+.++|++..++.+...+.... ....+++|+|||+|++|+|+|..+.+.|.+|+++.+.+. .++. ..
T Consensus 247 pG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a----~~ 322 (464)
T PRK12831 247 PGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA----RV 322 (464)
T ss_pred CCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCC----CH
Confidence 777777888776665443322110 012578999999999999999999999999999988653 2222 11
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC------------------CCc--EEecCEEEEccCCCCChhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------------------DGR--TLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------------------~G~--~i~aD~vi~a~G~~p~~~~ 294 (461)
..+ +.+++.||++++++.++++..+++|++..+++. +|+ ++++|.||+|+|..|+..+
T Consensus 323 -~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~ 400 (464)
T PRK12831 323 -EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLI 400 (464)
T ss_pred -HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhh
Confidence 111 345678999999999999986556766555542 222 6999999999999999987
Q ss_pred hhc--cccc-CCCcEEeCCC-CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccC
Q 012545 295 FKG--QVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 361 (461)
Q Consensus 295 ~~~--~~~~-~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 361 (461)
+.. ++.. .+|+|.||++ ++||.|+|||+|||+..+ ..+..|..+|+.||.+|...+.
T Consensus 401 ~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 401 SSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred hcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 753 4555 5689999987 999999999999999765 4678999999999999987653
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=262.93 Aligned_cols=387 Identities=25% Similarity=0.258 Sum_probs=291.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcCc
Q 012545 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (461)
Q Consensus 8 vvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (461)
++|||+|++|+++|..|++.. +..+|+++..++...|.++.++..+........... .... +....++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~i 68 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLR----------YPPR-FNRATGI 68 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhc----------ccch-hHHhhCC
Confidence 589999999999999988865 467799999998888887776554443321111100 0111 3357789
Q ss_pred EEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCC
Q 012545 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAK 167 (461)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 167 (461)
++..++++..++++.+.+.+.++ .+.||+|++|||+++. .++ +....
T Consensus 69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~---------------------------~~~-----~~~~~ 115 (415)
T COG0446 69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPR---------------------------PPP-----ISDWE 115 (415)
T ss_pred EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCccc---------------------------CCC-----ccccC
Confidence 99999999999999999999998 7999999999999993 222 34456
Q ss_pred CEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCc
Q 012545 168 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247 (461)
Q Consensus 168 ~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV 247 (461)
.+++.+...+...+...... .++++|+|+|++|+|+|..+++.|.+|++++..+++++..+.+++.+.+.+.+++.||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~--~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi 193 (415)
T COG0446 116 GVVTLRLREDAEALKGGAEP--PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGV 193 (415)
T ss_pred ceEEECCHHHHHHHHHHHhc--cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCc
Confidence 78999999999998877753 5899999999999999999999999999999999999873228999999999999999
Q ss_pred EEEcCCcEEEEEecCCCCEEE-EEeCCCcEEecCEEEEccCCCCChhhhhccc--cc-CCCcEEeCCCCCCC-CCCEEEe
Q 012545 248 KIIKGTVAVGFTTNADGEVKE-VKLKDGRTLEADIVVVGVGGRPLISLFKGQV--AE-NKGGIETDDFFKTS-ADDVYAV 322 (461)
Q Consensus 248 ~v~~~~~v~~i~~~~~g~~~~-v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~--~~-~~g~i~vd~~~~t~-~~~vya~ 322 (461)
+++++..+.+++...+..... +...++..+++|.+++++|.+||..+.+... .. .+|+|.||++++|+ .++|||+
T Consensus 194 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~ 273 (415)
T COG0446 194 ELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAA 273 (415)
T ss_pred EEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEec
Confidence 999999999998733222211 6778888999999999999999988887664 33 67889999999997 9999999
Q ss_pred CcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC-c-------EE
Q 012545 323 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-D-------TV 394 (461)
Q Consensus 323 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-~-------~~ 394 (461)
|||+..+....+.....+++..|..+++.++.++.+. . .....+++.+...++......|...+ + .+
T Consensus 274 GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 348 (415)
T COG0446 274 GDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-L----RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVV 348 (415)
T ss_pred cceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-c----ccccccCceEEEEcCeEEEEecCCcccccceeeeEEE
Confidence 9999987665444556789999999999999999865 1 23345677788888888877776653 1 11
Q ss_pred EecCCccc--cCCCc--EEEEE--EeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCCh
Q 012545 395 LFGDNDLA--SATHK--FGTYW--IKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 447 (461)
Q Consensus 395 ~~~~~~~~--~~~~~--~~~~~--~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~ 447 (461)
..+..... .+... ..+.. .+.++++|++. ......+..+...++.+..+.++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 406 (415)
T COG0446 349 SGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LEVLKRIGALALAIGLGDTVAEL 406 (415)
T ss_pred eccCcccccccCCCCeEEEEEEEcCcccceehhhh-HHHHhhhhhhhhhhhhcCchhhh
Confidence 11111111 01111 22222 26788888887 22223456677777777766553
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=290.60 Aligned_cols=288 Identities=22% Similarity=0.260 Sum_probs=207.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+||||||||++||..|++.|++ |+|+|+.+... +++.. .+|.+.. .........++++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~~----gip~~rl--p~~~~~~~~~~l~ 492 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIG--------GVLKY----GIPEFRL--PKKIVDVEIENLK 492 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceeee----cCCCCCC--CHHHHHHHHHHHH
Confidence 357999999999999999999999987 99999975321 11110 1111110 0001123345677
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
+.|++++.++.+ .+.+.+++.....||+||||||+. | +.++ +|
T Consensus 493 ~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~---------------------------~~l~---ip 536 (752)
T PRK12778 493 KLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLP---------------------------NFMN---IP 536 (752)
T ss_pred HCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCC---------------------------CCCC---CC
Confidence 889999998654 334555444456799999999984 6 3333 67
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHH------HhcCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCc-cCCcccCHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAI------KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW-CMPRLFTADI 234 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l------~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~-~~~~~~~~~~ 234 (461)
|.+.+++++..++.....+.... ....+++|+|||+|++|+|+|..+.+.|.+ |+++++.+. .++. ..
T Consensus 537 G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----~~ 612 (752)
T PRK12778 537 GENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA----RL 612 (752)
T ss_pred CCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC----CH
Confidence 77777888776655443322111 012468999999999999999999999987 999998754 2332 11
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------CC-----------cEEecCEEEEccCCCCChhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~G-----------~~i~aD~vi~a~G~~p~~~~ 294 (461)
.+ .+.+++.||++++++.+.++..++++++..+++. +| .++++|.||+|+|++|+..+
T Consensus 613 ~e--~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l 690 (752)
T PRK12778 613 EE--VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLV 690 (752)
T ss_pred HH--HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccc
Confidence 11 1346788999999999999987556766666542 22 25999999999999999876
Q ss_pred hhc--cccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 295 FKG--QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 295 ~~~--~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+.. ++.. .+|+|.||++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 691 ~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L 749 (752)
T PRK12778 691 PSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG----------ATVILAMGDGKRAAAAIDEYL 749 (752)
T ss_pred cccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCc----------HHHHHHHHHHHHHHHHHHHHh
Confidence 643 4555 5688999999999999999999999764 457889999999999998665
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=283.49 Aligned_cols=283 Identities=24% Similarity=0.303 Sum_probs=194.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+||||||||++||..|+++|++ |+|+|+.+.... .+. ..+|.+.. ..+......+++.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~GG--------~lr----~~IP~~Rl--p~evL~~die~l~~ 601 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAGG--------VVK----NIIPQFRI--PAELIQHDIEFVKA 601 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccCc--------cee----eecccccc--cHHHHHHHHHHHHH
Confidence 57999999999999999999999987 999999865221 110 01122110 00111233467778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.++.+ .+ .+.+.+...||+||||||+++. +.++ ++|.
T Consensus 602 ~GVe~~~gt~V-di-------~le~L~~~gYDaVILATGA~~~--------------------------~~l~---IpG~ 644 (1019)
T PRK09853 602 HGVKFEFGCSP-DL-------TVEQLKNEGYDYVVVAIGADKN--------------------------GGLK---LEGG 644 (1019)
T ss_pred cCCEEEeCcee-EE-------EhhhheeccCCEEEECcCCCCC--------------------------CCCC---CCCc
Confidence 89999998765 22 2223344679999999999861 1112 4554
Q ss_pred CCCCEEEeCC-HHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC-C-CcEEEEccCCc-cCCcccCHHHHHHHHH
Q 012545 165 DAKNIFYLRE-IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN-N-IDVSMVYPEPW-CMPRLFTADIAAFYEG 240 (461)
Q Consensus 165 ~~~~v~~~~~-~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~-g-~~Vtli~~~~~-~~~~~~~~~~~~~~~~ 240 (461)
+ .++++..+ +.+.....+.+ ..+++|+|||+|++|+|+|..+.+. | .+|+++.|.+. .++. .+++ +.+
T Consensus 645 ~-~gV~saldfL~~~k~~~~~~--~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eE----le~ 716 (1019)
T PRK09853 645 N-QNVIKALPFLEEYKNKGTAL--KLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREE----YEE 716 (1019)
T ss_pred c-CCceehHHHHHHHhhhcccc--cCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHH----HHH
Confidence 3 34543221 22221111112 1478999999999999999998887 4 48999998763 4443 3333 333
Q ss_pred HHHhcCcEEEcCCcEEEEEec--------------CCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCC
Q 012545 241 YYANKGIKIIKGTVAVGFTTN--------------ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKG 304 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~--------------~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g 304 (461)
.+ +.||+++..+.+.++..+ .+|+...+.+.++.++++|.||+|+|.+|+.+++.. ++.. .+|
T Consensus 717 Al-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G 795 (1019)
T PRK09853 717 AL-EDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKG 795 (1019)
T ss_pred HH-HcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCC
Confidence 33 469999999988888631 112222233344568999999999999999998853 4555 568
Q ss_pred cEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 305 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 305 ~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++.||+++||+.|+|||+|||+..+ ..+..|..+|+.||.+|++..
T Consensus 796 ~I~VDetlqTs~pgVFAaGD~a~Gp----------~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 796 WPVVDANGETSLTNVYMIGDVQRGP----------STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CEEeCCCcccCCCCEEEEeccccCc----------hHHHHHHHHHHHHHHHHhhhc
Confidence 8999999999999999999999765 467899999999999998765
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=268.40 Aligned_cols=287 Identities=22% Similarity=0.244 Sum_probs=199.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||+||+++|..|++.|++ |+|+|+++... +++.. .+|.+.. .........+++++
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~g--------G~l~~----gip~~~~--~~~~~~~~~~~l~~ 202 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAG--------GLLRY----GIPEFRL--PKDIVDREVERLLK 202 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCC--------cEeec----cCCCccC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999986 99999986421 01100 0111100 00111234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.+++++.++.+. +.+.+.+.. +.||+||+|||+. +. .++ ++|
T Consensus 203 ~gv~~~~~~~v~------~~v~~~~~~-~~~d~vvlAtGa~~~~---------------------------~~~---i~G 245 (457)
T PRK11749 203 LGVEIRTNTEVG------RDITLDELR-AGYDAVFIGTGAGLPR---------------------------FLG---IPG 245 (457)
T ss_pred cCCEEEeCCEEC------CccCHHHHH-hhCCEEEEccCCCCCC---------------------------CCC---CCC
Confidence 899999986541 223333333 7899999999986 42 222 566
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHh-cCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCc-cCCcccCHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKA-KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEG 240 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~-~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~ 240 (461)
.+.+++++..++............ ..+++|+|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .. ...+
T Consensus 246 ~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~----~~~~ 319 (457)
T PRK11749 246 ENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SE----EEVE 319 (457)
T ss_pred ccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH----HHHH
Confidence 555666654333222211000011 147899999999999999999999997 8999998654 3332 22 2346
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-------------------CCcEEecCEEEEccCCCCChhhhhc--cc
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-------------------DGRTLEADIVVVGVGGRPLISLFKG--QV 299 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-------------------~G~~i~aD~vi~a~G~~p~~~~~~~--~~ 299 (461)
.+++.||++++++.++++..+ ++.+.+|++. +++++++|.||+|+|.+|+..++.. ++
T Consensus 320 ~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl 398 (457)
T PRK11749 320 HAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGL 398 (457)
T ss_pred HHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCc
Confidence 678899999999999999863 3332333321 3347999999999999999877642 35
Q ss_pred cc-CCCcEEeCC-CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 300 AE-NKGGIETDD-FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 300 ~~-~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
.. .+|+|.||+ +++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 399 ~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 399 ELNRWGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred cCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 578999998 8999999999999999643 46788999999999999876644
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-31 Score=283.25 Aligned_cols=287 Identities=19% Similarity=0.190 Sum_probs=205.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||||||+||..|++.|++ |+|+|+.+... +++.. .+|.+.. ..+......+.++.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~G--------G~l~y----GIP~~rl--p~~vi~~~i~~l~~ 368 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDLG--------GVLRY----GIPEFRL--PNQLIDDVVEKIKL 368 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCCC--------ceEEc----cCCCCcC--hHHHHHHHHHHHHh
Confidence 58999999999999999999999997 99999986422 12111 1222211 00111233456778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.|++++.++.+ ++.+.+++.....||+|+||||+. | +.++ +||
T Consensus 369 ~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~p---------------------------r~l~---IpG 412 (944)
T PRK12779 369 LGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLP---------------------------TFMN---VPG 412 (944)
T ss_pred hcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCC---------------------------CcCC---CCC
Confidence 89999988543 345666665556899999999995 5 3333 778
Q ss_pred CCCCCEEEeCCHHHHHHHHHHH--------HhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-cCCcccCHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAI--------KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADI 234 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l--------~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~~~~~~~~~ 234 (461)
.+.++|++..++.....+.... ....+++|+|||+|.+|+++|..+.+.|.+|+++.+.+. .++. .
T Consensus 413 ~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa-----~ 487 (944)
T PRK12779 413 EHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA-----R 487 (944)
T ss_pred CcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc-----c
Confidence 7888888876665543332211 112468999999999999999999999999999988753 2222 1
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCC-CCEEEEEe---------C--------CC--cEEecCEEEEccCCCCChhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKL---------K--------DG--RTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~---------~--------~G--~~i~aD~vi~a~G~~p~~~~ 294 (461)
...+.. ..+.||+++++..++++..+++ +.+..+++ . +| .+++||.||+|+|+.|+..+
T Consensus 488 ~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l 566 (944)
T PRK12779 488 VEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM 566 (944)
T ss_pred HHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhh
Confidence 122323 3467999999999999976433 34444432 1 22 36999999999999999765
Q ss_pred hhc--cccc-CCCcEEeCC-CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 295 FKG--QVAE-NKGGIETDD-FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 295 ~~~--~~~~-~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
... ++.. .+|.|.||+ +++||.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 567 ~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L 626 (944)
T PRK12779 567 KDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred hhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHh
Confidence 433 4554 578899996 5899999999999999765 457889999999999997665
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=255.69 Aligned_cols=290 Identities=23% Similarity=0.269 Sum_probs=196.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++|+|||+|++|+++|..|++.|++ |+++|+.+.... .+.........+. .......+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg-------~~~~~~~~~~~~~-------~~~~~~~~~l~ 79 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPGG-------LMLFGIPEFRIPI-------ERVREGVKELE 79 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCc-------eeeecCcccccCH-------HHHHHHHHHHH
Confidence 357999999999999999999999886 999999865321 0100000000000 00112234455
Q ss_pred HcCcEEEcCCeEEEEeC----CCCE-----EEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCccccc
Q 012545 84 EKGIELILSTEIVRADI----ASKT-----LLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQV 153 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~----~~~~-----v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~ 153 (461)
+.+++++.++.+..++. .... +... +..+.||+||||||+. +.+|++
T Consensus 80 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~i---------------------- 136 (352)
T PRK12770 80 EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGI---------------------- 136 (352)
T ss_pred hCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCC----------------------
Confidence 67999999877755432 1111 1111 2237899999999994 644443
Q ss_pred ccccCCCCCCCCCCCEEEeCCHHHHHHHHHH---------HHhcCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCC
Q 012545 154 LRLTDFGVEGADAKNIFYLREIDDADKLVEA---------IKAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEP 223 (461)
Q Consensus 154 ~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~---------l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~ 223 (461)
||.+.+++++.. +....+... +....+++++|+|+|++|+|+|..|...|.+ |+++++.+
T Consensus 137 --------pg~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 137 --------PGEDLPGVYSAL--EYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred --------CCccccCceeHH--HHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 444444555432 122221110 0011258999999999999999999999987 99998865
Q ss_pred ccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--------------------CCCcEEecCEEE
Q 012545 224 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--------------------KDGRTLEADIVV 283 (461)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--------------------~~G~~i~aD~vi 283 (461)
..... . .....+.|+++||++++++.+++++. ++.+..+++ .+++++++|.||
T Consensus 207 ~~~~~-~----~~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi 279 (352)
T PRK12770 207 INEAP-A----GKYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVV 279 (352)
T ss_pred hhhCC-C----CHHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEE
Confidence 43221 1 13345668899999999999999875 344434432 123579999999
Q ss_pred EccCCCCChhhhh--ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 284 VGVGGRPLISLFK--GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 284 ~a~G~~p~~~~~~--~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+++|++|+..+.. .++.. .+|+|.||++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 280 ~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 280 FAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred ECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence 9999999998775 34554 5688999999999999999999999864 457889999999999997654
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=243.57 Aligned_cols=295 Identities=21% Similarity=0.338 Sum_probs=213.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
++++|||+|+|.+|.+.+..|-..-++ |+||++..++-|. |.++..-...-....+ .+......+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~Yd---V~vVSPRnyFlFT-PLLpS~~vGTve~rSI-----------vEPIr~i~r 118 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYD---VTVVSPRNYFLFT-PLLPSTTVGTVELRSI-----------VEPIRAIAR 118 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccc---eEEeccccceEEe-eccCCccccceeehhh-----------hhhHHHHhh
Confidence 468999999999999998888765554 9999999876554 2221111100000000 112223333
Q ss_pred Hc--CcEEEcCCeEEEEeCCCCEEEc----CCC----cEEecCEEEEccCCCccccccccccccCccccccccCCccccc
Q 012545 84 EK--GIELILSTEIVRADIASKTLLS----ATG----LIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQV 153 (461)
Q Consensus 84 ~~--~v~~~~~~~v~~i~~~~~~v~~----~~~----~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~ 153 (461)
.. ++.++.. +.+.+|++.+.|++ .++ ..+.||+||+|+|+.++.+.|||+.+
T Consensus 119 ~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e----------------- 180 (491)
T KOG2495|consen 119 KKNGEVKYLEA-ECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEE----------------- 180 (491)
T ss_pred ccCCCceEEec-ccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhh-----------------
Confidence 32 5666665 88999999998765 333 36899999999999997666666543
Q ss_pred ccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHh---------------cCCCcEEEECCCHHHHHHHHHHHHC------
Q 012545 154 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA---------------KKNGKAVVVGGGYIGLELSAALKIN------ 212 (461)
Q Consensus 154 ~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~---------------~~~~~v~VvG~G~~g~e~a~~l~~~------ 212 (461)
+.+.++..+++++++..+-. .+--+++|||||++|+|+|.+|+..
T Consensus 181 --------------~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~ 246 (491)
T KOG2495|consen 181 --------------NAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLR 246 (491)
T ss_pred --------------chhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHH
Confidence 33455667777777554421 1233789999999999999999763
Q ss_pred --------CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEE
Q 012545 213 --------NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIV 282 (461)
Q Consensus 213 --------g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~v 282 (461)
..+||+++..|++++. |+..+.+..++.+.+.||.+..++.|+.++. +. ..+...|| +++++.++
T Consensus 247 k~yp~l~~~i~vtLiEA~d~iL~m-Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~--I~~~~~~g~~~~iPYG~l 321 (491)
T KOG2495|consen 247 KIYPELKKDIKVTLIEAADHILNM-FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KT--IHAKTKDGEIEEIPYGLL 321 (491)
T ss_pred HhhhcchhheEEEeeccchhHHHH-HHHHHHHHHHHHhhhccceeecccEEEeecC--cE--EEEEcCCCceeeecceEE
Confidence 4689999999999986 8999999999999999999999999999864 22 34555566 57999999
Q ss_pred EEccCCCCChh--hhhccccc-CCCcEEeCCCCCC-CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 283 VVGVGGRPLIS--LFKGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 283 i~a~G~~p~~~--~~~~~~~~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
+|++|..|..- -+...+.. .+.++.||++||. +.+||||+|||+..+.. .++.+.|.+||.++|+++-
T Consensus 322 VWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 322 VWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred EecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence 99999776543 22222222 3458999999998 89999999999944322 1578899999999999874
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=260.06 Aligned_cols=294 Identities=21% Similarity=0.268 Sum_probs=197.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||+||++||..|++.|++ |+|+|+.+... +++.. .+|.+.. .........+++.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~G--------G~l~~----gip~~~~--~~~~~~~~~~~~~~ 205 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIG--------GLLRY----GIPDFKL--EKEVIDRRIELMEA 205 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCC--------ceeee----cCCcccC--CHHHHHHHHHHHHh
Confidence 57999999999999999999999987 99999986432 11110 1111100 00011223456788
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.++.+. .+. .. +.....||++++|||+... +.++ ++|.
T Consensus 206 ~gv~~~~~~~v~-~~~-----~~-~~~~~~~d~vvlAtGa~~~--------------------------~~l~---ipG~ 249 (471)
T PRK12810 206 EGIEFRTNVEVG-KDI-----TA-EELLAEYDAVFLGTGAYKP--------------------------RDLG---IPGR 249 (471)
T ss_pred CCcEEEeCCEEC-CcC-----CH-HHHHhhCCEEEEecCCCCC--------------------------CcCC---CCCc
Confidence 899999986542 111 11 1113579999999999731 2233 6676
Q ss_pred CCCCEEEeCCHHHHH--HHHHH--H--HhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCccCCcccCH----H
Q 012545 165 DAKNIFYLREIDDAD--KLVEA--I--KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTA----D 233 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~--~l~~~--l--~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~~~~~----~ 233 (461)
+..++++..++.... .+... . ....+++|+|||+|++|+|+|..+.+.|. +|++++..+......++. .
T Consensus 250 ~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~ 329 (471)
T PRK12810 250 DLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPY 329 (471)
T ss_pred cCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcc
Confidence 667777643322110 00000 0 01257899999999999999998888886 788776554332211010 0
Q ss_pred H-HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-----CC---------cEEecCEEEEccCCCCChh-hhhc
Q 012545 234 I-AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----DG---------RTLEADIVVVGVGGRPLIS-LFKG 297 (461)
Q Consensus 234 ~-~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----~G---------~~i~aD~vi~a~G~~p~~~-~~~~ 297 (461)
+ .....+.+++.||++++++.++++.. +++++..|++. +| +++++|.||+|+|.+|+.. +++.
T Consensus 330 ~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~ 408 (471)
T PRK12810 330 WPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQ 408 (471)
T ss_pred cchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccc
Confidence 0 11134667788999999999999975 46666555432 22 4799999999999999853 5543
Q ss_pred -cccc-CCCcEEeC-CCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 298 -QVAE-NKGGIETD-DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 298 -~~~~-~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
++.. .+|.+.+| ++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 409 ~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 409 FGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred cCcccCCCCCEEeCCCcccCCCCCEEEccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 4555 47889998 79999999999999999854 45778999999999999877644
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=278.85 Aligned_cols=290 Identities=21% Similarity=0.214 Sum_probs=203.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+|||||||||+||..|+++|++ |+|+|+.+... +++. ..+|.+.. ..+......+++++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~G--------G~l~----~gip~~rl--~~e~~~~~~~~l~~ 492 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVG--------GVLQ----YGIPSFRL--PRDIIDREVQRLVD 492 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCc--------ceee----ccCCccCC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986422 1111 01222110 01112235567788
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCc-EEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
.|++++.++.+ ++.+.+.+-. ...||+||||||+. | +.++ +|
T Consensus 493 ~Gv~~~~~~~v------g~~~~~~~l~~~~~yDaViIATGa~~p---------------------------r~l~---Ip 536 (1006)
T PRK12775 493 IGVKIETNKVI------GKTFTVPQLMNDKGFDAVFLGVGAGAP---------------------------TFLG---IP 536 (1006)
T ss_pred CCCEEEeCCcc------CCccCHHHHhhccCCCEEEEecCCCCC---------------------------CCCC---CC
Confidence 99999998543 2223322211 24699999999995 5 3333 67
Q ss_pred CCCCCCEEEeCCHHHHHHHHHH-----H--HhcCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCccCCcccCHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEA-----I--KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADI 234 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~-----l--~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~~~~~~~~ 234 (461)
|.+.++|++..++.....+... . ....+++|+|||+|++|+++|..+.++|.+ |+++.+....- .+...
T Consensus 537 G~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~ 613 (1006)
T PRK12775 537 GEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI 613 (1006)
T ss_pred CcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH
Confidence 7777788876655544332110 0 012578999999999999999999999975 78887654321 11111
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------C--------C--cEEecCEEEEccCCCCChhhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------D--------G--RTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~--------G--~~i~aD~vi~a~G~~p~~~~~ 295 (461)
.-.+.+++.||++++++.++++..+++|++.++++. + | .++++|.||+|+|+.|+..++
T Consensus 614 --~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~ 691 (1006)
T PRK12775 614 --EEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT 691 (1006)
T ss_pred --HHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh
Confidence 112456788999999999999986556777666542 1 2 269999999999999998766
Q ss_pred hc--cccc-CCCcEEeCC-----CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 296 KG--QVAE-NKGGIETDD-----FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 296 ~~--~~~~-~~g~i~vd~-----~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
.. ++.. .+|.|.+|+ +++||.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 692 ~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 692 QSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred hccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 43 4555 568899996 7899999999999999765 46788999999999999766543
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=267.51 Aligned_cols=283 Identities=20% Similarity=0.261 Sum_probs=187.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+||||||||++||..|++.|++ |+|+|+++.... .+.. .+|.+.. .........+++..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lGG--------~l~~----~IP~~rl--p~e~l~~~ie~l~~ 599 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGG--------VVKN----IIPEFRI--SAESIQKDIELVKF 599 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccCc--------eeee----cccccCC--CHHHHHHHHHHHHh
Confidence 47999999999999999999999987 999999864221 1100 0111110 00111233456677
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.+.. ..+.+.+.+...||+||||||+.+. +.++ ++|.
T Consensus 600 ~GVe~~~g~~--------~d~~ve~l~~~gYDaVIIATGA~~~--------------------------~~l~---I~G~ 642 (1012)
T TIGR03315 600 HGVEFKYGCS--------PDLTVAELKNQGYKYVILAIGAWKH--------------------------GPLR---LEGG 642 (1012)
T ss_pred cCcEEEEecc--------cceEhhhhhcccccEEEECCCCCCC--------------------------CCCC---cCCC
Confidence 8999988732 1122333344679999999999861 1111 4443
Q ss_pred CCCCEEEeCCHHHHHHHHHHH-HhcCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEccCCc-cCCcccCHHHHHHHHH
Q 012545 165 DAKNIFYLREIDDADKLVEAI-KAKKNGKAVVVGGGYIGLELSAALKIN-NI-DVSMVYPEPW-CMPRLFTADIAAFYEG 240 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l-~~~~~~~v~VvG~G~~g~e~a~~l~~~-g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~ 240 (461)
. .+++. ..+.+..+.+.- ....+++|+|||+|++|+|+|..+.+. |. +|+++.+... .++. ...+ +.+
T Consensus 643 ~-~~v~~--avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eE----l~~ 714 (1012)
T TIGR03315 643 G-ERVLK--SLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREE----LEE 714 (1012)
T ss_pred C-cceee--HHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHH----HHH
Confidence 2 23332 222222221110 012589999999999999999998876 74 7999998763 3443 2333 333
Q ss_pred HHHhcCcEEEcCCcEEEEEe-------------cCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCc
Q 012545 241 YYANKGIKIIKGTVAVGFTT-------------NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGG 305 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~-------------~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~ 305 (461)
.+ +.||+++.+..+.++.. +.+|+...+...+..++++|.||+|+|.+|+..+++. ++.. .+|+
T Consensus 715 al-eeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~ 793 (1012)
T TIGR03315 715 AL-EDGVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGW 793 (1012)
T ss_pred HH-HcCCEEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCC
Confidence 33 47999999888888762 0111111111112236899999999999999988854 4554 5789
Q ss_pred EEeCCC-CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 306 IETDDF-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 306 i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+.||++ ++|+.|+|||+|||+..+ ..+..|..+|+.||.+|++..
T Consensus 794 I~VD~~~~~Ts~pgVFAaGD~a~GP----------~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 794 PVVNQATGETNITNVFVIGDANRGP----------ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred EEeCCCCCccCCCCEEEEeCcCCCc----------cHHHHHHHHHHHHHHHHhccc
Confidence 999986 899999999999999765 467889999999999998654
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-29 Score=250.46 Aligned_cols=286 Identities=22% Similarity=0.295 Sum_probs=198.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||+|++|++||..|++.|++ |+++|+.+... +++.. .+|.+.. .........+++++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~g--------G~l~~----gip~~~~--~~~~~~~~~~~~~~ 203 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEIG--------GLLTF----GIPSFKL--DKAVLSRRREIFTA 203 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCC--------ceeee----cCccccC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986421 11110 1111110 00111234567788
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.++.+.. .+.+.+ ....||.+|+|||+.+. +.++ ++|.
T Consensus 204 ~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~--------------------------~~~~---i~g~ 247 (467)
T TIGR01318 204 MGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRS--------------------------MRGG---LPGE 247 (467)
T ss_pred CCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCC--------------------------CcCC---CCCc
Confidence 9999999876521 122222 22579999999999872 1222 6777
Q ss_pred CCCCEEEeCCHHHH--HHHHH-----H--HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc-CCcccCHH
Q 012545 165 DAKNIFYLREIDDA--DKLVE-----A--IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTAD 233 (461)
Q Consensus 165 ~~~~v~~~~~~~~~--~~l~~-----~--l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~ 233 (461)
+.+++++..++... ..+.. . +....+++++|+|+|++|+++|..+.+.|. +||++++.+.. ++. .+.+
T Consensus 248 ~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e 326 (467)
T TIGR01318 248 DAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRRE 326 (467)
T ss_pred CCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHH
Confidence 77788765332211 11100 0 001246899999999999999999999995 79999987653 443 2222
Q ss_pred HHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------CC-----------cEEecCEEEEccCCCCCh-
Q 012545 234 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLI- 292 (461)
Q Consensus 234 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~G-----------~~i~aD~vi~a~G~~p~~- 292 (461)
.+.+++.||++++++.++++..++++++..+++. +| .++++|.||+|+|++|+.
T Consensus 327 -----~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 401 (467)
T TIGR01318 327 -----VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAM 401 (467)
T ss_pred -----HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcc
Confidence 2446788999999999999976455666555441 12 369999999999999985
Q ss_pred hhhh-ccccc-CCCcEEeC----CCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 293 SLFK-GQVAE-NKGGIETD----DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 293 ~~~~-~~~~~-~~g~i~vd----~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.++. .++.. .+|+|.|| .+++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...
T Consensus 402 ~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 402 PWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred ccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence 3333 34555 56889999 68999999999999999765 35678999999999998754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=261.62 Aligned_cols=289 Identities=19% Similarity=0.258 Sum_probs=194.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||+||++||..|++.|++ |+|+|+++... +.+.. .+|.+.. .........+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~~--~~~~~~~~~~~l~~ 255 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAG--------GMMRY----GIPRFRL--PESVIDADIAPLRA 255 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCC--------ceeee----cCCCCCC--CHHHHHHHHHHHHH
Confidence 47999999999999999999999987 99999986532 11110 0111110 00001123456677
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|+++..++.+ .+ .+.+.+.. ..||++++|||+.+. +.++ +||.
T Consensus 256 ~Gv~i~~~~~v-~~-----dv~~~~~~-~~~DaVilAtGa~~~--------------------------~~~~---ipG~ 299 (652)
T PRK12814 256 MGAEFRFNTVF-GR-----DITLEELQ-KEFDAVLLAVGAQKA--------------------------SKMG---IPGE 299 (652)
T ss_pred cCCEEEeCCcc-cC-----ccCHHHHH-hhcCEEEEEcCCCCC--------------------------CCCC---CCCc
Confidence 89999888543 21 12222222 359999999999861 1222 5666
Q ss_pred CCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCc-cCCcccCHHHHHHHHHHH
Q 012545 165 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~~l 242 (461)
+..+++...++........ ....+++|+|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .+.+ +.+.
T Consensus 300 ~~~gv~~~~~~l~~~~~~~--~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~e----i~~a- 371 (652)
T PRK12814 300 ELPGVISGIDFLRNVALGT--ALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAE----IEEA- 371 (652)
T ss_pred CcCCcEeHHHHHHHhhcCC--cccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----HHHH-
Confidence 6666664322211111000 11257899999999999999999999986 6999998764 3443 2332 2233
Q ss_pred HhcCcEEEcCCcEEEEEecCCCC-EEEEEeC---------------CCc--EEecCEEEEccCCCCChhhhhc-cccc-C
Q 012545 243 ANKGIKIIKGTVAVGFTTNADGE-VKEVKLK---------------DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-N 302 (461)
Q Consensus 243 ~~~GV~v~~~~~v~~i~~~~~g~-~~~v~~~---------------~G~--~i~aD~vi~a~G~~p~~~~~~~-~~~~-~ 302 (461)
.+.||++++++.++++..++++. +..+.+. +|+ ++++|.||+|+|..|+..++.. ++.. .
T Consensus 372 ~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~ 451 (652)
T PRK12814 372 LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSR 451 (652)
T ss_pred HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccC
Confidence 35699999999999987632221 1122221 122 5899999999999999987753 4555 4
Q ss_pred CCcEEeCC-CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCc
Q 012545 303 KGGIETDD-FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 364 (461)
Q Consensus 303 ~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 364 (461)
+|+|.||+ +++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+..
T Consensus 452 ~G~I~vd~~~~~Ts~pgVfA~GDv~~g~----------~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 452 NGTVKVDPETLQTSVAGVFAGGDCVTGA----------DIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred CCcEeeCCCCCcCCCCCEEEcCCcCCCc----------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 68999996 6899999999999999765 4578899999999999987776543
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=258.05 Aligned_cols=287 Identities=20% Similarity=0.251 Sum_probs=196.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||||||+||..|++.|++ |+|+|+.+... +++.. .+|.+.. .........+++++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~G--------G~l~~----gip~~~l--~~~~~~~~~~~~~~ 389 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEIG--------GLLTF----GIPAFKL--DKSLLARRREIFSA 389 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------ceeee----cCCCccC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986422 11111 1111110 00011223466778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.++.+. ..+.+.+. ...||++++|||+... +.++ +++.
T Consensus 390 ~Gv~~~~~~~v~------~~i~~~~~-~~~~DavilAtGa~~~--------------------------~~l~---i~g~ 433 (654)
T PRK12769 390 MGIEFELNCEVG------KDISLESL-LEDYDAVFVGVGTYRS--------------------------MKAG---LPNE 433 (654)
T ss_pred CCeEEECCCEeC------CcCCHHHH-HhcCCEEEEeCCCCCC--------------------------CCCC---CCCC
Confidence 899999987552 11222111 2479999999998651 1222 5666
Q ss_pred CCCCEEEeCCHH--HHHHH---HHH----HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc-CCcccCHH
Q 012545 165 DAKNIFYLREID--DADKL---VEA----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTAD 233 (461)
Q Consensus 165 ~~~~v~~~~~~~--~~~~l---~~~----l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~ 233 (461)
+..+++...++. ....+ ... .....+++|+|||+|++|+++|..+.+.|. +|+++.+.+.. ++. .+.
T Consensus 434 ~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~~- 511 (654)
T PRK12769 434 DAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG-SKK- 511 (654)
T ss_pred CCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CHH-
Confidence 667776532211 00000 000 001246899999999999999999999986 69999887653 332 222
Q ss_pred HHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------CC-----------cEEecCEEEEccCCCCCh-
Q 012545 234 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLI- 292 (461)
Q Consensus 234 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~G-----------~~i~aD~vi~a~G~~p~~- 292 (461)
..+.+++.||++++++.++++..++++++..|++. +| .++++|.||+|+|+.|+.
T Consensus 512 ----e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 587 (654)
T PRK12769 512 ----EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGM 587 (654)
T ss_pred ----HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcc
Confidence 23557889999999999999976456776666541 23 269999999999999985
Q ss_pred hhhh-ccccc-CCCcEEeCC----CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 293 SLFK-GQVAE-NKGGIETDD----FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 293 ~~~~-~~~~~-~~g~i~vd~----~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.+++ .++.. .+|.|.||+ ++||+.|+|||+||++..+ ..+..|..+|+.||.+|...+
T Consensus 588 ~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 588 PWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred ccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence 3443 34555 578899985 5899999999999999765 457889999999999998654
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=255.39 Aligned_cols=284 Identities=21% Similarity=0.265 Sum_probs=193.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|+|||+|+||+++|..|+++|++ |+|+|+++.... .+.. .++.+.. .........++++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~gG--------~~~~----~i~~~~~--~~~~~~~~~~~~~ 344 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPGG--------VMRY----GIPSYRL--PDEALDKDIAFIE 344 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCc--------eEee----cCCcccC--CHHHHHHHHHHHH
Confidence 357899999999999999999999987 999999875321 1100 0111100 0000122346778
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.|++++.++.+.. + +...+ ....||+||+|||+.+. +.++ ++|
T Consensus 345 ~~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~--------------------------r~l~---i~G 388 (604)
T PRK13984 345 ALGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLG--------------------------RSTR---IPG 388 (604)
T ss_pred HCCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCC--------------------------ccCC---CCC
Confidence 89999999876632 1 11111 23589999999998740 2222 666
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHh-----cCCCcEEEECCCHHHHHHHHHHHHCCC------cEEEEccC--CccCCccc
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKA-----KKNGKAVVVGGGYIGLELSAALKINNI------DVSMVYPE--PWCMPRLF 230 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~-----~~~~~v~VvG~G~~g~e~a~~l~~~g~------~Vtli~~~--~~~~~~~~ 230 (461)
.+..+++.. .+.+..+.+.+.. ..+++|+|||||++|+|+|..+.+++. +|+++... ...++.
T Consensus 389 ~~~~gv~~a--~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~-- 464 (604)
T PRK13984 389 TDHPDVIQA--LPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA-- 464 (604)
T ss_pred cCCcCeEeH--HHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC--
Confidence 666666653 3333333333211 136899999999999999999998753 67876432 222322
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--------C-----------CcEEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--------D-----------GRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--------~-----------G~~i~aD~vi~a~G~~p~ 291 (461)
... .+.+ +.+.||++++++.++++.. +++++..+++. + ++++++|.||+|+|++|+
T Consensus 465 --~~~-e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 465 --DME-EIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred --CHH-HHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 111 1222 3457999999998888865 45655555442 1 247999999999999999
Q ss_pred hhhhhc----ccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 292 ISLFKG----QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 292 ~~~~~~----~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++++.. .+..++|+|.||+++||++|+|||+|||+..+ ....|..+|+.||.+|...+
T Consensus 540 ~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 540 YSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred hhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence 987753 23346788999999999999999999999764 34679999999999997654
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=246.87 Aligned_cols=294 Identities=23% Similarity=0.281 Sum_probs=195.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||+|++|++||..|++.|++ |+|+|+.+.... ++.. .+|.+.. .........+++++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~gG--------~l~~----gip~~~~--~~~~~~~~~~~~~~ 205 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCGG--------LLMY----GIPNMKL--DKAIVDRRIDLLSA 205 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCCc--------eeec----cCCCccC--CHHHHHHHHHHHHh
Confidence 37999999999999999999999986 999999864221 0100 0111100 00011233467788
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.|++++.++.+. .+. .. +.....||.|++|||+. + +.++ ++|
T Consensus 206 ~Gv~~~~~~~v~-~~~-----~~-~~~~~~~d~VilAtGa~~~---------------------------~~l~---i~G 248 (485)
T TIGR01317 206 EGIDFVTNTEIG-VDI-----SA-DELKEQFDAVVLAGGATKP---------------------------RDLP---IPG 248 (485)
T ss_pred CCCEEECCCEeC-Ccc-----CH-HHHHhhCCEEEEccCCCCC---------------------------CcCC---CCC
Confidence 999999987653 111 11 11235799999999998 5 3333 667
Q ss_pred CCCCCEEEeCCH-HHHHHHHH--HH-----HhcCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCccCCccc-C--
Q 012545 164 ADAKNIFYLREI-DDADKLVE--AI-----KAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLF-T-- 231 (461)
Q Consensus 164 ~~~~~v~~~~~~-~~~~~l~~--~l-----~~~~~~~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~~~-~-- 231 (461)
.+.++|++..++ .+...... .+ ....+++|+|||+|++|+|+|..+.+.| .+|+++++.+..+.... +
T Consensus 249 ~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~ 328 (485)
T TIGR01317 249 RELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNP 328 (485)
T ss_pred cCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccC
Confidence 666777765332 22111100 00 0125789999999999999988777776 57999988776543211 0
Q ss_pred -----H--HHHHHHHHHHHhcCcEE-EcCCcEEEEEecCCCCEEEEEe--------CCC-----------cEEecCEEEE
Q 012545 232 -----A--DIAAFYEGYYANKGIKI-IKGTVAVGFTTNADGEVKEVKL--------KDG-----------RTLEADIVVV 284 (461)
Q Consensus 232 -----~--~~~~~~~~~l~~~GV~v-~~~~~v~~i~~~~~g~~~~v~~--------~~G-----------~~i~aD~vi~ 284 (461)
. +.....++..+..|+.+ ++++.+.++..++++++..+++ ++| .++++|.||+
T Consensus 329 ~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~ 408 (485)
T TIGR01317 329 WPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLL 408 (485)
T ss_pred CCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEE
Confidence 0 12223444445567654 4677888887644466666553 134 2799999999
Q ss_pred ccCCC-CChhhhhc-cccc-CCCcEEe-CCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 285 GVGGR-PLISLFKG-QVAE-NKGGIET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 285 a~G~~-p~~~~~~~-~~~~-~~g~i~v-d~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
|+|.. |+..+++. ++.. .+|.+.+ |++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 409 AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L 478 (485)
T TIGR01317 409 AMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYL 478 (485)
T ss_pred ccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHH
Confidence 99986 88877653 4554 4677854 588999999999999999754 457789999999999998766
Q ss_pred CC
Q 012545 361 GG 362 (461)
Q Consensus 361 ~~ 362 (461)
.+
T Consensus 479 ~g 480 (485)
T TIGR01317 479 MG 480 (485)
T ss_pred hc
Confidence 44
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=249.65 Aligned_cols=288 Identities=21% Similarity=0.266 Sum_probs=196.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++|+|||+|++||++|..|++.|++ |+|+|+++... +++.. .+|.+.. .........++++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~l--~~~~~~~~~~~~~ 371 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEIG--------GMLTF----GIPPFKL--DKTVLSQRREIFT 371 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCCC--------Ceeec----cCCcccC--CHHHHHHHHHHHH
Confidence 358999999999999999999999987 99999997522 11110 1111110 0000122356778
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
..|++++.++.+. +.+.+.+ ....||.+++|||+.+. +.++ +++
T Consensus 372 ~~Gv~~~~~~~v~------~~~~~~~-l~~~~DaV~latGa~~~--------------------------~~~~---i~g 415 (639)
T PRK12809 372 AMGIDFHLNCEIG------RDITFSD-LTSEYDAVFIGVGTYGM--------------------------MRAD---LPH 415 (639)
T ss_pred HCCeEEEcCCccC------CcCCHHH-HHhcCCEEEEeCCCCCC--------------------------CCCC---CCC
Confidence 8999999987552 1222222 23579999999998761 2222 566
Q ss_pred CCCCCEEEeCCHHH-----HHHHHHH----HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc-CCcccCH
Q 012545 164 ADAKNIFYLREIDD-----ADKLVEA----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTA 232 (461)
Q Consensus 164 ~~~~~v~~~~~~~~-----~~~l~~~----l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~ 232 (461)
.+.+++++..++.. ...+.+. +....+++++|+|+|.++++.|..+.++|. +|+++.+.+.. ++. ...
T Consensus 416 ~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~ 494 (639)
T PRK12809 416 EDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK 494 (639)
T ss_pred CccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH
Confidence 66667765322211 1001000 011246899999999999999999888885 79999887654 433 222
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---C------CC-----------cEEecCEEEEccCCCCCh
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---K------DG-----------RTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~------~G-----------~~i~aD~vi~a~G~~p~~ 292 (461)
++ ..+++.||++++++.++++..+++|++..+++ . +| .++++|.||+|+|++|+.
T Consensus 495 e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~ 569 (639)
T PRK12809 495 EV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHA 569 (639)
T ss_pred HH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCc
Confidence 22 23567899999999999998655666655533 1 22 368999999999999975
Q ss_pred -hhhh-ccccc-CCCcEEeCC----CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 293 -SLFK-GQVAE-NKGGIETDD----FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 293 -~~~~-~~~~~-~~g~i~vd~----~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.+++ .++.. .+|.|.||+ ++||+.|+|||+|||+..+ .++..|..+|+.||.+|...+
T Consensus 570 ~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l 634 (639)
T PRK12809 570 MPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLF 634 (639)
T ss_pred cccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHH
Confidence 3443 34555 468899985 4899999999999999765 457889999999999998765
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=252.69 Aligned_cols=281 Identities=15% Similarity=0.133 Sum_probs=194.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+|||||||||+||.+|++.|++ |+|+|+++... ..+.... ..+++.. .........+.++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~G-------G~~~~~~--~~~~g~~---~~~~~~~~~~~l~~ 227 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAG-------GSLLSEA--ETIDGKP---AADWAAATVAELTA 227 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCC-------Ceeeccc--cccCCcc---HHHHHHHHHHHHhc
Confidence 57999999999999999999999987 99999986532 1111110 0111100 00000122233333
Q ss_pred c-CcEEEcCCeEEEEeCCCCEEEc-----------C---CC--cEEecCEEEEccCCCccccccccccccCccccccccC
Q 012545 85 K-GIELILSTEIVRADIASKTLLS-----------A---TG--LIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRT 147 (461)
Q Consensus 85 ~-~v~~~~~~~v~~i~~~~~~v~~-----------~---~~--~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~ 147 (461)
. +++++.++.|+.++........ . .+ .++.||+||||||+.+
T Consensus 228 ~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~--------------------- 286 (985)
T TIGR01372 228 MPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE--------------------- 286 (985)
T ss_pred CCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC---------------------
Confidence 4 5999999899887653321110 0 01 1589999999999999
Q ss_pred CcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCccC
Q 012545 148 LPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCM 226 (461)
Q Consensus 148 ~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~ 226 (461)
+.+| ++|.+.++|++........+ .....++++++|+|+|++++|+|..|.+.|. .|+++++.+.+
T Consensus 287 ------r~~p---ipG~~~pgV~~~~~~~~~l~---~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~- 353 (985)
T TIGR01372 287 ------RPLV---FANNDRPGVMLAGAARTYLN---RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV- 353 (985)
T ss_pred ------cCCC---CCCCCCCCcEEchHHHHHHH---hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-
Confidence 4444 67777788887654443321 1111257899999999999999999999995 57888765432
Q ss_pred CcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC----CCcEEecCEEEEccCCCCChhhhhc-cccc
Q 012545 227 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK----DGRTLEADIVVVGVGGRPLISLFKG-QVAE 301 (461)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~----~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~ 301 (461)
...+.+.|++.||++++++.++++.. ++.+..|++. ++++++||.|+++.|++||++++.. +..
T Consensus 354 --------~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~- 422 (985)
T TIGR01372 354 --------SPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK- 422 (985)
T ss_pred --------hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-
Confidence 23456778999999999999999976 4445555554 4568999999999999999998753 222
Q ss_pred CCCcEEeCCCC-----CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 302 NKGGIETDDFF-----KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 302 ~~g~i~vd~~~-----~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+..|+.. .|+.|+||+||||++.. .+..|..+|+.||..++...
T Consensus 423 ----~~~~~~~~~~~~~t~v~gVyaaGD~~g~~-----------~~~~A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 423 ----LAWDAAIAAFLPGDAVQGCILAGAANGLF-----------GLAAALADGAAAGAAAARAA 471 (985)
T ss_pred ----eeeccccCceecCCCCCCeEEeeccCCcc-----------CHHHHHHHHHHHHHHHHHHc
Confidence 2222211 37899999999999763 56779999999999986544
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-27 Score=233.42 Aligned_cols=293 Identities=19% Similarity=0.268 Sum_probs=193.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHH--cCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAK--QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~--~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
.++|+||||||||++||..|++ .|++ |+|+|+.+. +|. ++...-....+... .....+..++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~-pgG-------lvr~gvaP~~~~~k-----~v~~~~~~~~ 89 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPT-PFG-------LVRSGVAPDHPETK-----NVTNQFSRVA 89 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCC-Ccc-------eEeeccCCCcchhH-----HHHHHHHHHH
Confidence 5799999999999999999987 4665 999999974 221 11111001111100 0011234556
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
...+++++.+..+ ++.+.+++-+ ..||+||+|||+.+. +.++ +|
T Consensus 90 ~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~--------------------------~~l~---Ip 133 (491)
T PLN02852 90 TDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESD--------------------------RRLG---IP 133 (491)
T ss_pred HHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCC--------------------------CCCC---CC
Confidence 6778998887544 2334444333 479999999999861 2233 67
Q ss_pred CCCCCCEEEeCCHHH-------HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC--------------------CC-
Q 012545 163 GADAKNIFYLREIDD-------ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN--------------------NI- 214 (461)
Q Consensus 163 g~~~~~v~~~~~~~~-------~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~--------------------g~- 214 (461)
|.+.++|+...++.. ...+...+ ..+++|+|||+|++|+|+|..|.+. +.
T Consensus 134 G~d~~gV~~a~~fl~~~ng~~d~~~~~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~ 211 (491)
T PLN02852 134 GEDLPGVLSAREFVWWYNGHPDCVHLPPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR 211 (491)
T ss_pred CCCCCCeEEHHHHHHHhhcchhhhhhhhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence 877888887655421 11111111 1478999999999999999998765 54
Q ss_pred cEEEEccCCccCCcccCHHH-------------------------------------HHHHHHHHHh---------cCcE
Q 012545 215 DVSMVYPEPWCMPRLFTADI-------------------------------------AAFYEGYYAN---------KGIK 248 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~~~~~-------------------------------------~~~~~~~l~~---------~GV~ 248 (461)
+|+++.|....-..+...++ .+.+.+...+ .+|.
T Consensus 212 ~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~ 291 (491)
T PLN02852 212 KVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELH 291 (491)
T ss_pred EEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEE
Confidence 59999887642211111111 1122222222 5799
Q ss_pred EEcCCcEEEEEec--CCCCEEEEEeC-----------------CC--cEEecCEEEEccCCC--CChhh-hhc--cccc-
Q 012545 249 IIKGTVAVGFTTN--ADGEVKEVKLK-----------------DG--RTLEADIVVVGVGGR--PLISL-FKG--QVAE- 301 (461)
Q Consensus 249 v~~~~~v~~i~~~--~~g~~~~v~~~-----------------~G--~~i~aD~vi~a~G~~--p~~~~-~~~--~~~~- 301 (461)
+++....++|..+ +++++..+++. +| ++++||.||.++|++ |...+ ++. ++..
T Consensus 292 ~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n 371 (491)
T PLN02852 292 FVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPN 371 (491)
T ss_pred EEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeEC
Confidence 9999999999742 23567666663 12 258999999999997 55543 322 2333
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.+|+|.+|+.++|+.|+|||+|||..++. ..+..+..+|+.++.+|+...
T Consensus 372 ~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~---------gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 372 VHGRVLSSASGADTEPGLYVVGWLKRGPT---------GIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CCceEEeCCCCccCCCCEEEeeeEecCCC---------CeeeecHhhHHHHHHHHHHHH
Confidence 57999999888999999999999998765 367778889999999998654
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-28 Score=222.07 Aligned_cols=284 Identities=20% Similarity=0.249 Sum_probs=201.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.|||+||||||||-+||.+.+|.|.++ =++-|+-.- ..+..-...++...+...+......+.+..++
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRT--Gl~aerfGG----------QvldT~~IENfIsv~~teGpkl~~ale~Hv~~ 278 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRT--GLVAERFGG----------QVLDTMGIENFISVPETEGPKLAAALEAHVKQ 278 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchh--hhhhhhhCC----------eeccccchhheeccccccchHHHHHHHHHHhh
Confidence 699999999999999999999999874 123333211 11111112222222222222333445666778
Q ss_pred cCcEEEcCCeEEEEeCC-----CCEEEcCCCcEEecCEEEEccCCCccccccccccc------cCccccccccCCccccc
Q 012545 85 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVSITSLTSIRS------KHCLCCFFLRTLPLFQV 153 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~------~~~~~~~~~~~~p~~~~ 153 (461)
+.++++...+++.+.+. -..|.+.+|-.+.++.+|++||+++.--.+||-.+ .-||-|+++
T Consensus 279 Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP-------- 350 (520)
T COG3634 279 YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP-------- 350 (520)
T ss_pred cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc--------
Confidence 88887776677777653 23688999999999999999999996556666544 335555553
Q ss_pred ccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHH
Q 012545 154 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 233 (461)
Q Consensus 154 ~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~ 233 (461)
. +++|+|+|||||++|+|.|-.|+-.-.+||+++-.+.+-.
T Consensus 351 -------------------------L--------F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA------ 391 (520)
T COG3634 351 -------------------------L--------FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA------ 391 (520)
T ss_pred -------------------------c--------cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh------
Confidence 0 0589999999999999999999988889999875443321
Q ss_pred HHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCCChhhhhccccc-CCCcE
Q 012545 234 IAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGI 306 (461)
Q Consensus 234 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i 306 (461)
-+.+++.|.. .+|+++.+...+++.. +..++.++...+ | ..++-+-|++-+|..||+++++..++. ..|.|
T Consensus 392 -D~VLq~kl~sl~Nv~ii~na~Ttei~G-dg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEI 469 (520)
T COG3634 392 -DAVLQDKLRSLPNVTIITNAQTTEVKG-DGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEI 469 (520)
T ss_pred -HHHHHHHHhcCCCcEEEecceeeEEec-CCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccE
Confidence 1234444443 5799999999999987 334555555432 3 346778899999999999999988888 78999
Q ss_pred EeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 307 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 307 ~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
.||.+..||+|+|||+|||+..+. +++..|+-+|..|+...+.
T Consensus 470 ivD~~g~TsvpGvFAAGD~T~~~y---------KQIIIamG~GA~AaL~AFD 512 (520)
T COG3634 470 IVDARGETNVPGVFAAGDCTTVPY---------KQIIIAMGEGAKASLSAFD 512 (520)
T ss_pred EEecCCCcCCCceeecCcccCCcc---------ceEEEEecCcchhhhhhhh
Confidence 999999999999999999998875 3455555666666555443
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=201.32 Aligned_cols=301 Identities=21% Similarity=0.186 Sum_probs=207.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecC-CCCCCCCHh
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPE 80 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (461)
|..+.+|+|||+|||+.+||.++++..++ -+|+|-.-... ......+.......++|+|+..+. ......+.+
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~---i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANG---IAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccC---cCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence 33456899999999999999999999887 48888652211 122345555566788888876442 223334555
Q ss_pred HHHHcCcEEEcCCeEEEEeCCCCEEEc-CCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 81 WYKEKGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
...+.|.+++.. .|.+++...+-+.+ .+.+.+.+|.+|+|||+...--.+||-.+.
T Consensus 79 qs~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~---------------------- 135 (322)
T KOG0404|consen 79 QSERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEG---------------------- 135 (322)
T ss_pred HHHhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcc----------------------
Confidence 566789998886 78888877764332 345569999999999988843333333110
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
..-..++..+.-++.+.-+ .+.|-.+|||||.+++|-|.+|.+.+.+|+++.|.+++-. +.. +.+
T Consensus 136 ---~fWqrGiSaCAVCDGaapi------frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA---s~~---Mq~ 200 (322)
T KOG0404|consen 136 ---EFWQRGISACAVCDGAAPI------FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA---SKI---MQQ 200 (322)
T ss_pred ---hHHhcccchhhcccCcchh------hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH---HHH---HHH
Confidence 0001122222112211111 1477889999999999999999999999999999987643 222 223
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCC-----EEEEEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeC-CCC
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGE-----VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD-DFF 312 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~-----~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd-~~~ 312 (461)
+..+.-+|++++++.+.+...+ .+. +..+.+.+.+.++.+-+++++|..|++.+++..++. .+|+|++- ..-
T Consensus 201 ra~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts 279 (322)
T KOG0404|consen 201 RAEKNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTS 279 (322)
T ss_pred HHhcCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcc
Confidence 4556678999999988887762 222 233444444679999999999999999999998888 68999988 667
Q ss_pred CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHH
Q 012545 313 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 356 (461)
Q Consensus 313 ~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 356 (461)
.||+|++||+||+..... .+...|...|.+||...
T Consensus 280 ~TsvpG~FAAGDVqD~ky---------RQAvTaAgsGciaaldA 314 (322)
T KOG0404|consen 280 LTSVPGVFAAGDVQDKKY---------RQAVTAAGSGCIAALDA 314 (322)
T ss_pred cccccceeeccccchHHH---------HHHHhhhccchhhhhhH
Confidence 899999999999987542 23444445555555443
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=233.19 Aligned_cols=286 Identities=22% Similarity=0.309 Sum_probs=191.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||+||+||++|..|++.|++ |+|+|+.+.... ++.. .+|.+... .+......+++.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~GG--------~l~~----gip~~~~~--~~~~~~~l~~~~~ 199 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGG--------MMRY----GIPAYRLP--REVLDAEIQRILD 199 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCC--------eeee----cCCCccCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999986 999999865321 1110 11111100 0001123355677
Q ss_pred cCcEEEcCCeE-EEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEI-VRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v-~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.|+++..++.+ ..+..+ .....||.+++|+|+... ..++ +++
T Consensus 200 ~Gv~~~~~~~~~~~~~~~--------~~~~~~D~Vi~AtG~~~~--------------------------~~~~---i~g 242 (564)
T PRK12771 200 LGVEVRLGVRVGEDITLE--------QLEGEFDAVFVAIGAQLG--------------------------KRLP---IPG 242 (564)
T ss_pred CCCEEEeCCEECCcCCHH--------HHHhhCCEEEEeeCCCCC--------------------------CcCC---CCC
Confidence 89998887654 221111 011358999999998751 1111 455
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCcc-CCcccCHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC-MPRLFTADIAAFYEGY 241 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~-~~~~~~~~~~~~~~~~ 241 (461)
.+..+++..-.+.. ..........+++++|+|+|..+++.+..+.+++ .+|+++.+.+.. ++. ....+ +.
T Consensus 243 ~~~~gv~~~~~~l~--~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~~-----~~ 314 (564)
T PRK12771 243 EDAAGVLDAVDFLR--AVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEEI-----EE 314 (564)
T ss_pred CccCCcEEHHHHHH--HhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHHH-----HH
Confidence 54455544322211 1110001124789999999999999999999888 679998887642 222 22222 23
Q ss_pred HHhcCcEEEcCCcEEEEEecCCCCE----EEEEe----CCC---------cEEecCEEEEccCCCCChhhhhc--ccccC
Q 012545 242 YANKGIKIIKGTVAVGFTTNADGEV----KEVKL----KDG---------RTLEADIVVVGVGGRPLISLFKG--QVAEN 302 (461)
Q Consensus 242 l~~~GV~v~~~~~v~~i~~~~~g~~----~~v~~----~~G---------~~i~aD~vi~a~G~~p~~~~~~~--~~~~~ 302 (461)
+.+.||++++++.+.++..++++.+ ..+.. ++| .++++|.||+|+|..|+..+++. ++...
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~ 394 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVG 394 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccC
Confidence 4567999999999999986444432 12221 222 37999999999999999888763 44446
Q ss_pred CCcEEeCC-CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 303 KGGIETDD-FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 303 ~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
+|+|.||+ +++|+.|+|||+|||+..+ .++..|..+|+.||.+|...+.+
T Consensus 395 ~G~i~vd~~~~~ts~~~Vfa~GD~~~g~----------~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 395 RGVVQVDPNFMMTGRPGVFAGGDMVPGP----------RTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred CCCEEeCCCCccCCCCCEEeccCcCCCc----------hHHHHHHHHHHHHHHHHHHHHcC
Confidence 78999997 7889999999999999754 56889999999999999776654
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=220.18 Aligned_cols=287 Identities=17% Similarity=0.223 Sum_probs=185.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCC-Cccc---------c----cccC-------CCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YER-PALS---------K----AYLF-------PEGT 60 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~-~~~~---------~----~~~~-------~~~~ 60 (461)
..++|+|||||+|||+||.+|++.|++ |+|+|+++... |.. +... . ...+ +...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 468999999999999999999999987 99999987532 211 0000 0 0000 0000
Q ss_pred CCCCCceeec--------------CCCCCCCCHhHHHHcCcE--EEcCCeEEEEeCCCCE--EEcCC--Cc--EEecCEE
Q 012545 61 ARLPGFHVCV--------------GSGGERLLPEWYKEKGIE--LILSTEIVRADIASKT--LLSAT--GL--IFKYQIL 118 (461)
Q Consensus 61 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~--v~~~~--~~--~~~~d~l 118 (461)
..+++++... ..+...++.++.++++++ +.++++|+.++...+. |.+.+ +. +..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 1111111110 001122344555667887 7889999999876554 44332 22 4579999
Q ss_pred EEccC--CCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Q 012545 119 VIATG--STVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV 196 (461)
Q Consensus 119 iiAtG--~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~Vv 196 (461)
|+||| +.|.+|+|||+.+ ++| .+++..++.+...+ ++++|+||
T Consensus 166 IvAtG~~~~P~~P~ipG~~~------------------------f~G----~~iHs~~yr~~~~~-------~gk~VvVV 210 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKS------------------------WPG----KQIHSHNYRVPDPF-------KNEVVVVI 210 (461)
T ss_pred EEeccCCCCCcCCCCCCccc------------------------CCc----eEEEecccCCcccc-------CCCEEEEE
Confidence 99999 7898888888753 222 12333333322222 68999999
Q ss_pred CCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcE
Q 012545 197 GGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT 276 (461)
Q Consensus 197 G~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~ 276 (461)
|+|.+|+|+|..|...+.+|+++.|.+.... . ..+.....++..+..|..+.. ++ .|+++||++
T Consensus 211 G~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~ 274 (461)
T PLN02172 211 GNFASGADISRDIAKVAKEVHIASRASESDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKV 274 (461)
T ss_pred CCCcCHHHHHHHHHHhCCeEEEEEeeccccc----------c-ccCcCCCCceEECCcccceec--CC---eEEECCCCC
Confidence 9999999999999999999999998654311 0 011112234555667776653 44 488999999
Q ss_pred EecCEEEEccCCCCChhhhhcccccCCCcEEeCCCC------C---CC-CCCEEEeCcccccCccccCcceeeccHHHHH
Q 012545 277 LEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFF------K---TS-ADDVYAVGDVATFPMKLYREMRRVEHVDHAR 346 (461)
Q Consensus 277 i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~------~---t~-~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~ 346 (461)
+++|.||+|||++++.++++. .+.+.+|++. . .. .|+++.+|=.... .....+.
T Consensus 275 ~~~D~Ii~~TGy~~~~pfL~~-----~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E 338 (461)
T PLN02172 275 VYADTIVHCTGYKYHFPFLET-----NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFE 338 (461)
T ss_pred ccCCEEEECCcCCccccccCc-----ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHH
Confidence 999999999999999998763 2345454321 1 13 4899999965322 2344566
Q ss_pred HHHHHHHHHHhccc
Q 012545 347 KSAEQAVKTIMATE 360 (461)
Q Consensus 347 ~~g~~aa~~i~~~~ 360 (461)
.|++.+|+-+.|..
T Consensus 339 ~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 339 IQSKWVAAVLSGRV 352 (461)
T ss_pred HHHHHHHHHHcCCC
Confidence 78998888877653
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=177.33 Aligned_cols=307 Identities=18% Similarity=0.245 Sum_probs=208.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|+|||||.+|+++|..+.+. +...+|.++|+.+.+.|. |.. -+.......+...+. .-.+.......|++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQ-Pgf---TLvGgGl~~l~~srr-~~a~liP~~a~wi~ 111 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQ-PGF---TLVGGGLKSLDSSRR-KQASLIPKGATWIK 111 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccC-cce---EEeccchhhhhhccC-cccccccCCcHHHH
Confidence 468999999999999999988875 345679999999988776 211 111111111100000 00001112233333
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
..|.+.++++++|.+.+|+++.||++|||+|-.-...-|+|+. ++
T Consensus 112 ---------ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~--------------------------Ea 156 (446)
T KOG3851|consen 112 ---------EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLV--------------------------EA 156 (446)
T ss_pred ---------HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChH--------------------------hh
Confidence 2677888999999999999999999999999887666777763 34
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE---------CCCHHHHHHHH-HHHHCCC--cEEEE--ccCCccCCcc
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV---------GGGYIGLELSA-ALKINNI--DVSMV--YPEPWCMPRL 229 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~Vv---------G~G~~g~e~a~-~l~~~g~--~Vtli--~~~~~~~~~~ 229 (461)
.+.++|-+..+..-+++..+.+.+.+..+.+.- |+-.-.+-++. .++++|. ++.++ ..-+.++.
T Consensus 157 l~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg-- 234 (446)
T KOG3851|consen 157 LDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG-- 234 (446)
T ss_pred ccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec--
Confidence 456678888888888888888887665555432 33333333433 4555663 34444 33333322
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChhhhhcccccCCCcEE
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIE 307 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~ 307 (461)
=...++.+++..++++|++.......++..++...+....-+-| ++++++++-+....++...+..+.+.+..|++.
T Consensus 235 -Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvd 313 (446)
T KOG3851|consen 235 -VKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVD 313 (446)
T ss_pred -HHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCccccee
Confidence 24567888889999999999888888888733221211111225 368899999998888877777777777889999
Q ss_pred eC-CCCCC-CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 308 TD-DFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 308 vd-~~~~t-~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
|| ..+|. ..||||++|||.+.|.. +..+.+..|..+.-+|+..--.|
T Consensus 314 VD~~TlQs~kypNVFgiGDc~n~Pns--------KTaAAvaaq~~vv~~nl~~~m~g 362 (446)
T KOG3851|consen 314 VDQSTLQSKKYPNVFGIGDCMNLPNS--------KTAAAVAAQSPVVDKNLTQVMQG 362 (446)
T ss_pred cChhhhccccCCCceeeccccCCCch--------hhHHHHHhcCchhhhhHHHHhcC
Confidence 99 67886 89999999999999875 66666677888888887654444
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=199.13 Aligned_cols=300 Identities=17% Similarity=0.268 Sum_probs=161.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC--C-Cc-----cccccc--CCCCCCCCCCceeecCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE--R-PA-----LSKAYL--FPEGTARLPGFHVCVGS 72 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~--~-~~-----~~~~~~--~~~~~~~~~~~~~~~~~ 72 (461)
.++|+|||||++||++|..|.+.|++ ++++|+++..+ |. . +. .-..+. .+.....+++++.....
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~ 77 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY 77 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence 36899999999999999999999987 99999998743 21 0 00 000000 01111222222221111
Q ss_pred -------CCCCCCHhHHHHcCcE--EEcCCeEEEEeCCC-------CEEEcC-CCc--EEecCEEEEccC--CCccccc-
Q 012545 73 -------GGERLLPEWYKEKGIE--LILSTEIVRADIAS-------KTLLSA-TGL--IFKYQILVIATG--STVSITS- 130 (461)
Q Consensus 73 -------~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~-------~~v~~~-~~~--~~~~d~liiAtG--~~~~~~~- 130 (461)
+...++....+++++. +.++++|.+++... -.|.+. +++ +..||+|++||| ..|.+|.
T Consensus 78 p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~ 157 (531)
T PF00743_consen 78 PDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEP 157 (531)
T ss_dssp SSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB---
T ss_pred CCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChh
Confidence 1122344455566764 78899999987532 124443 332 457999999999 5677774
Q ss_pred -cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHH
Q 012545 131 -LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL 209 (461)
Q Consensus 131 -~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l 209 (461)
+||+++ ++ ..+++++++.+...+ ++|+|+|||+|.+|+++|..+
T Consensus 158 ~~~G~e~------------------------F~----G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el 202 (531)
T PF00743_consen 158 SFPGLEK------------------------FK----GEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVEL 202 (531)
T ss_dssp --CTGGG------------------------HC----SEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHH
T ss_pred hhhhhhc------------------------CC----eeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHH
Confidence 777643 22 347777777665544 789999999999999999999
Q ss_pred HHCCCcEEEEccCCcc-CCccc----------------------CHHHHHHH-HHHHHh------cC-------------
Q 012545 210 KINNIDVSMVYPEPWC-MPRLF----------------------TADIAAFY-EGYYAN------KG------------- 246 (461)
Q Consensus 210 ~~~g~~Vtli~~~~~~-~~~~~----------------------~~~~~~~~-~~~l~~------~G------------- 246 (461)
+....+|++..|.+.+ +++.. +..+.+.+ .+.+.+ .|
T Consensus 203 ~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ 282 (531)
T PF00743_consen 203 SRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPT 282 (531)
T ss_dssp TTTSCCEEEECC--------------------------------------------------------------------
T ss_pred HHhcCCeEEEEecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998887543 22211 01111111 111110 01
Q ss_pred -------------cEEEcCCcEEEEEecCCCCEEEEEeCCCcEE-ecCEEEEccCCCCChhhhhccccc-CCCcEEeCCC
Q 012545 247 -------------IKIIKGTVAVGFTTNADGEVKEVKLKDGRTL-EADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF 311 (461)
Q Consensus 247 -------------V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i-~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~ 311 (461)
|++. ..|+++.. .+|.+.||+++ ++|.||+|||++...++++..+.. .++.+..-.+
T Consensus 283 ind~l~~~i~~G~i~vk--~~I~~~~~------~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~ 354 (531)
T PF00743_consen 283 INDELPNRIRSGRIKVK--PDIKRFTE------NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKH 354 (531)
T ss_dssp ----------------E--E-EEEE-S------SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETT
T ss_pred ccccccccccccccccc--cccccccc------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111 12333321 25789999875 699999999999999888765433 3333333333
Q ss_pred CC---CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 312 FK---TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 312 ~~---t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+- ...|++..+|=+-... .....+..|++.+|+-+.|..
T Consensus 355 vfp~~~~~ptLafIG~~~~~g----------~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 355 VFPPNLDHPTLAFIGLVQPFG----------SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp TEETETTSTTEEESS-SBSSS-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccccccccccccccccc----------ccccccccccccccccccccc
Confidence 32 2458899999764321 235567889999988877653
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-21 Score=190.90 Aligned_cols=290 Identities=21% Similarity=0.249 Sum_probs=200.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|.|||||||||+||..|.+.|+. |+++|+.+... ..+.+. +|.+.. ..+......+.+++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~~G-------Gll~yG-----IP~~kl--~k~i~d~~i~~l~~ 185 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVALDG-------GLLLYG-----IPDFKL--PKDILDRRLELLER 185 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCCCc-------eeEEec-----Cchhhc--cchHHHHHHHHHHH
Confidence 47999999999999999999999998 99999986522 112211 222211 11122345677888
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++|+.++++- +.++.+.= .-.||.+++|+|+.-. +.++ ++|.
T Consensus 186 ~Gv~~~~~~~vG------~~it~~~L-~~e~Dav~l~~G~~~~--------------------------~~l~---i~g~ 229 (457)
T COG0493 186 SGVEFKLNVRVG------RDITLEEL-LKEYDAVFLATGAGKP--------------------------RPLD---IPGE 229 (457)
T ss_pred cCeEEEEcceEC------CcCCHHHH-HHhhCEEEEeccccCC--------------------------CCCC---CCCc
Confidence 999999987652 22222211 2467999999997541 2233 7888
Q ss_pred CCCCEEEeCCHHHHHHHHHHHH-----h--cCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc-CCcccCHHHH
Q 012545 165 DAKNIFYLREIDDADKLVEAIK-----A--KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIA 235 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~-----~--~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~ 235 (461)
+.++++...++.........-. . ..+++++|||+|.++++++....+.|. +|+.+.+...- -...++....
T Consensus 230 d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~ 309 (457)
T COG0493 230 DAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAA 309 (457)
T ss_pred CCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccch
Confidence 8888876544433222211110 0 123899999999999999999999997 67777532221 1111233345
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-------------------C--cEEecCEEEEccCCCCChhh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-------------------G--RTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-------------------G--~~i~aD~vi~a~G~~p~~~~ 294 (461)
+...+...+.|+...+.....++..+++|++..+.+.. | .++++|.|+.|+|+.++...
T Consensus 310 ~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~ 389 (457)
T COG0493 310 QLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATD 389 (457)
T ss_pred hhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccc
Confidence 56677888899999999888999887788776654421 2 25789999999998887543
Q ss_pred h---hccccc-CCCcEEeCCCC-CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 295 F---KGQVAE-NKGGIETDDFF-KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 295 ~---~~~~~~-~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
. ...+.. ..|.+.+++.+ +|+.|++||.||+..+. ..+..|..+|+.+|+.|-
T Consensus 390 ~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 390 GLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred ccccccccccCCCCceecccccccccCCCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence 2 223444 67999999998 99999999999999874 567889999999999876
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=170.05 Aligned_cols=267 Identities=25% Similarity=0.358 Sum_probs=177.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
+.+|||||+||.+||..|+..- +.++|+++...+..- |. .+ ..++. .|.. . .....++.
T Consensus 1 kfivvgggiagvscaeqla~~~-psa~illitass~vksvtn~~--~i-~~yle--------kfdv--~---eq~~~elg 63 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSVTNYQ--KI-GQYLE--------KFDV--K---EQNCHELG 63 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHHhhHH--HH-HHHHH--------hcCc--c---ccchhhhc
Confidence 4689999999999999999975 567899999886411 10 00 00100 0000 0 00000111
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
.+.. + +.+ .|..++..++.+++.+|+.+.|++|++|+|.+|. .. .+
T Consensus 64 ~~f~-~-~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk---------------------------lq----~E 109 (334)
T KOG2755|consen 64 PDFR-R-FLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK---------------------------LQ----VE 109 (334)
T ss_pred ccHH-H-HHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcc---------------------------ee----ec
Confidence 1111 1 122 2555666788999999999999999999999992 11 22
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
+ -.+.+...++.+.++.++..+. +.|+|.|+|.|-+++|++.++. +.+|++....+.+...+|++.+.+.+...|
T Consensus 110 ~-~n~~Iv~irDtDsaQllq~kl~--kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l 184 (334)
T KOG2755|consen 110 G-INPKIVGIRDTDSAQLLQCKLV--KAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINL 184 (334)
T ss_pred C-CCceEEEEecCcHHHHHHHHHh--hcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhh
Confidence 3 2356778889999999999887 5789999999999999999985 678999988888888888888887776666
Q ss_pred HhcC------------cEEEcCCc-----------------------------------EEEEE-ecCCCCEEEEEeCCC
Q 012545 243 ANKG------------IKIIKGTV-----------------------------------AVGFT-TNADGEVKEVKLKDG 274 (461)
Q Consensus 243 ~~~G------------V~v~~~~~-----------------------------------v~~i~-~~~~g~~~~v~~~~G 274 (461)
...+ ++.+.+++ +..+. ..+...+.......|
T Consensus 185 ~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~ 264 (334)
T KOG2755|consen 185 RADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKM 264 (334)
T ss_pred hcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhccccccccccc
Confidence 2211 11111100 00000 000010111111111
Q ss_pred --cEEecCEEEEccCCCCChhhhh-ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccC
Q 012545 275 --RTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 329 (461)
Q Consensus 275 --~~i~aD~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~ 329 (461)
..+.+|.+++|+|..||.+++- ..+.. ++|++.||+.|+|+.|++||+||++...
T Consensus 265 ~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt~ 323 (334)
T KOG2755|consen 265 ADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTTT 323 (334)
T ss_pred ccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccccccceeeecceeccC
Confidence 2678999999999999999553 33444 7899999999999999999999998743
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=187.26 Aligned_cols=284 Identities=13% Similarity=0.127 Sum_probs=161.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC--CCcccccccCCCCCCCCCC-ce--eecCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE--RPALSKAYLFPEGTARLPG-FH--VCVGSGGER 76 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~--~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~ 76 (461)
..++|+||||||||++||..|++.|++ |+++|+.+..+ +. .|--....+.+.-..+.+. +. ...+.. ..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-~R 457 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-VR 457 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc-cc
Confidence 357999999999999999999999998 99999864311 11 0000000000000000000 00 000000 00
Q ss_pred CCH------hHHHHc--CcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCC-CccccccccccccCccccccccC
Q 012545 77 LLP------EWYKEK--GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVSITSLTSIRSKHCLCCFFLRT 147 (461)
Q Consensus 77 ~~~------~~~~~~--~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~~~g~~~~~~~~~~~~~~ 147 (461)
... ....+. ++.++.+..+ +..++.++-....||+|+||||+ .|
T Consensus 458 ~~k~~l~~i~~il~~g~~v~~~~gv~l------G~dit~edl~~~gyDAV~IATGA~kp--------------------- 510 (1028)
T PRK06567 458 WDKNNLDILRLILERNNNFKYYDGVAL------DFNITKEQAFDLGFDHIAFCIGAGQP--------------------- 510 (1028)
T ss_pred chHHHHHHHHHHHhcCCceEEECCeEE------CccCCHHHHhhcCCCEEEEeCCCCCC---------------------
Confidence 111 111222 3555556431 22222222123679999999999 57
Q ss_pred CcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHH-----h-cCCCcEEEECCCHHHHHHHHHHHH----------
Q 012545 148 LPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK-----A-KKNGKAVVVGGGYIGLELSAALKI---------- 211 (461)
Q Consensus 148 ~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~-----~-~~~~~v~VvG~G~~g~e~a~~l~~---------- 211 (461)
+.++ +||.+..+|++..++........... . ..+++|+|||||++|+|+|.....
T Consensus 511 ------r~L~---IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l 581 (1028)
T PRK06567 511 ------KVLD---IENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFA 581 (1028)
T ss_pred ------CCCC---CCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHH
Confidence 3333 67777777886555332221111110 0 025799999999999999983322
Q ss_pred ----------------------------------------CCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEc
Q 012545 212 ----------------------------------------NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251 (461)
Q Consensus 212 ----------------------------------------~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~ 251 (461)
....|+++.|...--..... .-.+.+ +...+.||+++.
T Consensus 582 ~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~-~~~eEv-~~A~eEGV~f~~ 659 (1028)
T PRK06567 582 KDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYK-LNHEEL-IYALALGVDFKE 659 (1028)
T ss_pred HhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCceEEEecCChhhCCCCC-CCHHHH-HHHHHcCcEEEe
Confidence 11128888776532111110 001222 234556999999
Q ss_pred CCcEEEEEecCCCCEEEEEeC--------------C-C---------------cEEecCEEEEccCCCCChhhhhccccc
Q 012545 252 GTVAVGFTTNADGEVKEVKLK--------------D-G---------------RTLEADIVVVGVGGRPLISLFKGQVAE 301 (461)
Q Consensus 252 ~~~v~~i~~~~~g~~~~v~~~--------------~-G---------------~~i~aD~vi~a~G~~p~~~~~~~~~~~ 301 (461)
+..+.++..+++|++.++++. + + .+++||.||+|+|..||+.+..
T Consensus 660 ~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~----- 734 (1028)
T PRK06567 660 NMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE----- 734 (1028)
T ss_pred cCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc-----
Confidence 999999987666777766553 1 1 4689999999999999997631
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
.++-..||+-.... +++..|+.+|+.++.+|..
T Consensus 735 ---------------~~~s~~~d~~~~f~---------Gtvv~A~as~k~~~~~i~~ 767 (1028)
T PRK06567 735 ---------------DKYSYFGDCNPKYS---------GSVVKALASSKEGYDAINK 767 (1028)
T ss_pred ---------------cccccccCCCCccc---------cHHHHHHHHHHhHHHHHHH
Confidence 11233444443322 4678899999999999853
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-21 Score=171.25 Aligned_cols=119 Identities=32% Similarity=0.441 Sum_probs=78.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCC-CCCHhHHHHc
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGE-RLLPEWYKEK 85 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 85 (461)
||||||||+||++||.+|++.+.+ |+++|+.+..++...++....+........ .+. ... ....+.+...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~ 71 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHRH-EFL-----PARLFKLVDQLKNR 71 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHHH-HHH-----HHHHGHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEeccccccccccccccccccccccccc-ccc-----cccccccccccccc
Confidence 799999999999999999988876 999998875444333332222211100000 000 000 0122233678
Q ss_pred CcEEEcCCeEEEEeCCCCEE----------EcCCCcEEecCEEEEccCCCccccccccc
Q 012545 86 GIELILSTEIVRADIASKTL----------LSATGLIFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v----------~~~~~~~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
++++..++.+.+++...+.+ ...++.++.||+||+|||+.|..|.|||+
T Consensus 72 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~ 130 (201)
T PF07992_consen 72 GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGE 130 (201)
T ss_dssp THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTT
T ss_pred eEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCC
Confidence 99998888999999888742 23455689999999999999966555553
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=153.84 Aligned_cols=317 Identities=13% Similarity=0.169 Sum_probs=194.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc-cccccCCCCCCCCCCceeec---------
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL-SKAYLFPEGTARLPGFHVCV--------- 70 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------- 70 (461)
||++.+|++.||-||+-|+.|..|...+. .+...+|+.+.+.|+-.++ ...-+.-....++.......
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL 78 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL 78 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHH
Confidence 88899999999999999999999998763 3389999999888874332 11111111111110000000
Q ss_pred -----------------CCCCCCCCHhHHHHcCcEEEcCCeEE---EEeCCCCE---EEcCCCcEEecCEEEEccCCCcc
Q 012545 71 -----------------GSGGERLLPEWYKEKGIELILSTEIV---RADIASKT---LLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 71 -----------------~~~~~~~~~~~~~~~~v~~~~~~~v~---~i~~~~~~---v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.......+..|....--.+..+++|. +++.+... +.+.++..+.++.||+++|.+|+
T Consensus 79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY 158 (436)
T ss_pred HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence 00112234455555555677788888 44444432 55667778999999999999997
Q ss_pred ccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHH
Q 012545 128 ITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 207 (461)
Q Consensus 128 ~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~ 207 (461)
||+ . +.....+.+|+..++..- +..+. ..++|.|||+|.+|.|+-.
T Consensus 159 IP~--~---------------------------f~~l~~~~vfHss~~~~~---~~~~~--~~~~V~ViG~GQSAAEi~~ 204 (436)
T COG3486 159 IPP--C---------------------------FRSLIGERVFHSSEYLER---HPELL--QKRSVTVIGSGQSAAEIFL 204 (436)
T ss_pred CCh--H---------------------------HhCcCccceeehHHHHHh---hHHhh--cCceEEEEcCCccHHHHHH
Confidence 762 1 122223567765543311 11111 2345999999999999988
Q ss_pred HHHHC----CCcEEEEccCCccCCcc--------cCHHHHHH-----------------------------------HHH
Q 012545 208 ALKIN----NIDVSMVYPEPWCMPRL--------FTADIAAF-----------------------------------YEG 240 (461)
Q Consensus 208 ~l~~~----g~~Vtli~~~~~~~~~~--------~~~~~~~~-----------------------------------~~~ 240 (461)
.|... ..++.|+.|+..+++.. |.++..++ +++
T Consensus 205 ~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~ 284 (436)
T COG3486 205 DLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQ 284 (436)
T ss_pred HHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHH
Confidence 88653 34688999998776531 22222111 111
Q ss_pred HHH--hcCcEEEcCCcEEEEEecCCCCEEEEEeC-----CCcEEecCEEEEccCCCCChh-hhh---ccccc-CCCcEEe
Q 012545 241 YYA--NKGIKIIKGTVAVGFTTNADGEVKEVKLK-----DGRTLEADIVVVGVGGRPLIS-LFK---GQVAE-NKGGIET 308 (461)
Q Consensus 241 ~l~--~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----~G~~i~aD~vi~a~G~~p~~~-~~~---~~~~~-~~g~i~v 308 (461)
.+. +..+.++.+++|+.++...+|+ ..+.+. ..+++++|.||+|||++...+ ++. ..+.. ++|...|
T Consensus 285 ~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I 363 (436)
T COG3486 285 SLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVI 363 (436)
T ss_pred HhcCCCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEe
Confidence 111 3468899999999999866664 344442 235789999999999885554 442 23344 6889999
Q ss_pred CCCCCCC-----CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 309 DDFFKTS-----ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 309 d~~~~t~-----~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+..++.. .-.||+.|-+...... +. +....+...+...++.+++..
T Consensus 364 ~~dY~v~~~~~~~~~ifvqn~e~htHGi--g~----pdLsl~a~Raa~I~~~L~g~~ 414 (436)
T COG3486 364 GRDYRVLWDGPGKGRIFVQNAELHTHGI--GA----PDLSLGAWRAAVILNSLLGRE 414 (436)
T ss_pred cCceeeecCCCCcceEEEeccccccccc--CC----ccchHHHHHHHHHHHHHhCcC
Confidence 9877652 2369999988765432 11 223333344444556666543
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=176.00 Aligned_cols=287 Identities=22% Similarity=0.281 Sum_probs=170.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|.|||+|||||+||-.|-+.|+. |+|+|+.+... +++... +|..... .-...+-.+++..
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~g--------gll~yg----ipnmkld--k~vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRVG--------GLLMYG----IPNMKLD--KFVVQRRVDLLEQ 1847 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCcC--------ceeeec----CCccchh--HHHHHHHHHHHHh
Confidence 47999999999999999999999997 99999997632 122111 1111100 0001234567778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.||+|+.++++ ++.+.+ |+..-.+|.+|+|+|+.- | +.+| +||.
T Consensus 1848 egi~f~tn~ei------gk~vs~-d~l~~~~daiv~a~gst~----------------------p----rdlp---v~gr 1891 (2142)
T KOG0399|consen 1848 EGIRFVTNTEI------GKHVSL-DELKKENDAIVLATGSTT----------------------P----RDLP---VPGR 1891 (2142)
T ss_pred hCceEEeeccc------cccccH-HHHhhccCeEEEEeCCCC----------------------C----cCCC---CCCc
Confidence 89999998764 333433 333457999999999864 1 5566 8998
Q ss_pred CCCCEEEeCCHHHHHHHHHHHH--------hcCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCc---------cC
Q 012545 165 DAKNIFYLREIDDADKLVEAIK--------AKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW---------CM 226 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~--------~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~---------~~ 226 (461)
+.+++...-.+.+.. -+..+. ..++|+|+|||||.+|-++...-.++|.+ |.-++--|. ++
T Consensus 1892 d~kgv~fame~l~~n-tk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npw 1970 (2142)
T KOG0399|consen 1892 DLKGVHFAMEFLEKN-TKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPW 1970 (2142)
T ss_pred cccccHHHHHHHHHh-HHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCC
Confidence 888886532222211 011111 12689999999999999988887788865 322222111 12
Q ss_pred Cc---ccCHHHH-HHHHHHHHhcCcEEE-----------------cCCcEE--EEEecCCCCEEEEEeC-CCcEEecCEE
Q 012545 227 PR---LFTADIA-AFYEGYYANKGIKII-----------------KGTVAV--GFTTNADGEVKEVKLK-DGRTLEADIV 282 (461)
Q Consensus 227 ~~---~~~~~~~-~~~~~~l~~~GV~v~-----------------~~~~v~--~i~~~~~g~~~~v~~~-~G~~i~aD~v 282 (461)
|. .|--+.. +...+. .|-..+ .+-+.+ +++.++.|+-.-++.. +.+.++||+|
T Consensus 1971 pqwprvfrvdygh~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv 2047 (2142)
T KOG0399|consen 1971 PQWPRVFRVDYGHAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLV 2047 (2142)
T ss_pred ccCceEEEeecchHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeeccee
Confidence 21 1110111 111111 111111 011111 2222233332222222 2257999999
Q ss_pred EEccCCCCChhhh--hccccc-CCCcEEe-CCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 283 VVGVGGRPLISLF--KGQVAE-NKGGIET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 283 i~a~G~~p~~~~~--~~~~~~-~~g~i~v-d~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
|+|.|+....... +..+.. .++-|.. ++.+.|+++.|||+|||-.+.+ .+..|.++|+.+|+.+=.
T Consensus 2048 ~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2048 ILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred eeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHHH
Confidence 9999987655433 233444 3455554 4678899999999999998764 344577899999998754
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-17 Score=159.83 Aligned_cols=174 Identities=20% Similarity=0.183 Sum_probs=122.6
Q ss_pred HHHHHHHHHhcCCCcEEEECCCHHHHHHH-HHHH----HCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcC
Q 012545 178 ADKLVEAIKAKKNGKAVVVGGGYIGLELS-AALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 252 (461)
Q Consensus 178 ~~~l~~~l~~~~~~~v~VvG~G~~g~e~a-~~l~----~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~ 252 (461)
...|.+.++......=.|++.+.+|+|.+ ..++ +.|.+|+++...+..++. .++.+.+.+.+++.|++++.+
T Consensus 203 ~~~l~~~l~~~~~~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g 279 (422)
T PRK05329 203 REALADALKPLAGDAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPG 279 (422)
T ss_pred HHHHHHHHHHhcCCCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeC
Confidence 44555555544334447789999999998 6665 469999999999888874 478899999999999999999
Q ss_pred CcEEEEEecCCCCEEEEEeCCCc--EEecCEEEEccCCCCChhhh-----------hccc------------------cc
Q 012545 253 TVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF-----------KGQV------------------AE 301 (461)
Q Consensus 253 ~~v~~i~~~~~g~~~~v~~~~G~--~i~aD~vi~a~G~~p~~~~~-----------~~~~------------------~~ 301 (461)
++|.+++.. ++.+..+...+|+ .+++|.||+|+|+.++..+. ...+ ..
T Consensus 280 ~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~ 358 (422)
T PRK05329 280 DEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPF 358 (422)
T ss_pred CEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCch
Confidence 999999873 4455555555553 58999999999986554331 0000 00
Q ss_pred CCCcEEeCCCCC-------CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFK-------TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~-------t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..-+|.+|+.+| +..+||||+|++.+++++..... -...|...|-.|+++|.+.
T Consensus 359 ~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 359 LQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAEE 419 (422)
T ss_pred hhcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHHh
Confidence 123466666665 45899999999999987632211 1235677888888888754
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=166.04 Aligned_cols=188 Identities=17% Similarity=0.234 Sum_probs=124.5
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCc-ccccccCCCCCCCCCCceee--cCC---
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPA-LSKAYLFPEGTARLPGFHVC--VGS--- 72 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~--- 72 (461)
|+++.+||+|||||++|+++|..|+++|.++ ++++||+.... |.+.+ .+-.+..+.....++.++.. ...
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 4567899999999999999999999999865 99999996532 11110 01111111112233333331 000
Q ss_pred -CCCCCCHhHHHHcCcE--EEcCCeEEEEeCCCC----EEEcCCCcE--EecCEEEEccC--CCccccccccccccCccc
Q 012545 73 -GGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSATGLI--FKYQILVIATG--STVSITSLTSIRSKHCLC 141 (461)
Q Consensus 73 -~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~~~~--~~~d~liiAtG--~~~~~~~~~g~~~~~~~~ 141 (461)
....+..+.++++++. +..++.|..++.+.+ +|+++++.+ +.+|+||+||| +.|.+|+++|+.+
T Consensus 82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~----- 156 (443)
T COG2072 82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDE----- 156 (443)
T ss_pred ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccC-----
Confidence 1122345566666654 333445555554442 466666654 45999999999 7788888877642
Q ss_pred cccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 142 CFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
+. ..+++..++.+.+.+ .+|+|+|||+|.+|++++..|.+.|.+|+++.|
T Consensus 157 -------------------f~----g~~~HS~~~~~~~~~-------~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qR 206 (443)
T COG2072 157 -------------------FK----GRILHSADWPNPEDL-------RGKRVLVIGAGASAVDIAPELAEVGASVTLSQR 206 (443)
T ss_pred -------------------CC----ceEEchhcCCCcccc-------CCCeEEEECCCccHHHHHHHHHhcCCeeEEEec
Confidence 22 225555555555554 799999999999999999999999999999999
Q ss_pred CCcc
Q 012545 222 EPWC 225 (461)
Q Consensus 222 ~~~~ 225 (461)
++..
T Consensus 207 s~~~ 210 (443)
T COG2072 207 SPPH 210 (443)
T ss_pred CCCc
Confidence 8764
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=151.22 Aligned_cols=178 Identities=23% Similarity=0.341 Sum_probs=101.1
Q ss_pred EEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCcccccccCCC---CCCCCCCc---ee------------
Q 012545 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPE---GTARLPGF---HV------------ 68 (461)
Q Consensus 9 vIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~---~~------------ 68 (461)
+|||||++||++|..|.+.|.++ |+|+|+++... |.+......+..+. ....++.+ ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 79999999999999999998754 99999996532 11100000000100 00111110 00
Q ss_pred ecCCCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCC--CccccccccccccCcccccc
Q 012545 69 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS--TVSITSLTSIRSKHCLCCFF 144 (461)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~--~~~~~~~~g~~~~~~~~~~~ 144 (461)
....+...++..+.+++++++.++++|.++..++. .|++.+++++.+|+||+|||. .|.+|++||.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~---------- 148 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGS---------- 148 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTG----------
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccc----------
Confidence 00001122345566678999999999999987654 577788878999999999995 6655554440
Q ss_pred ccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 145 LRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 145 ~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.+ ...++..++.+... .++++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus 149 -------------------~~-~~~~h~~~~~~~~~-------~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 149 -------------------AF-RPIIHSADWRDPED-------FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp -------------------GC-SEEEEGGG-STTGG-------CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred -------------------cc-cceEehhhcCChhh-------cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 11 13444433333222 2689999999999999999999999999999999875
Q ss_pred c
Q 012545 225 C 225 (461)
Q Consensus 225 ~ 225 (461)
+
T Consensus 202 ~ 202 (203)
T PF13738_consen 202 W 202 (203)
T ss_dssp -
T ss_pred C
Confidence 4
|
... |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=158.07 Aligned_cols=248 Identities=17% Similarity=0.204 Sum_probs=135.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc-cccccCCCCCCCCCCceeecCC-----------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL-SKAYLFPEGTARLPGFHVCVGS----------- 72 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------- 72 (461)
.+|+|+||.||++|+.|..|.+.+ ..++..+|+.+.+.|+..++ ...-+......++.-.....+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 589999999999999999999986 23499999998877774332 2212221111111110000000
Q ss_pred ---------------CCCCCCHhHHHH-cCcEEEcCCeEEEEeCCCC------EEEcC----CCcEEecCEEEEccCCCc
Q 012545 73 ---------------GGERLLPEWYKE-KGIELILSTEIVRADIASK------TLLSA----TGLIFKYQILVIATGSTV 126 (461)
Q Consensus 73 ---------------~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~------~v~~~----~~~~~~~d~liiAtG~~~ 126 (461)
.....+..|+.+ ..-.+..+.+|++|++... .|.+. +++.+.++.||+|+|..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 001112233322 3433777889999976552 35552 346899999999999999
Q ss_pred cccccccccccCccccccccCCcccccccccCCCCCCCC-CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHH
Q 012545 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 205 (461)
Q Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~ 205 (461)
.+|++ +.... .+.+++..++.....- ....++|+|||+|.+|.|+
T Consensus 160 ~iP~~-----------------------------~~~~~~~~~v~Hss~~~~~~~~-----~~~~~~V~VVGgGQSAAEi 205 (341)
T PF13434_consen 160 RIPEW-----------------------------FQDLPGSPRVFHSSEYLSRIDQ-----SLAGKRVAVVGGGQSAAEI 205 (341)
T ss_dssp ---GG-----------------------------GGGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHH
T ss_pred CCCcc-----------------------------hhhcCCCCCEEEehHhhhcccc-----ccCCCeEEEECCcHhHHHH
Confidence 66532 11111 3678887766544311 1257899999999999999
Q ss_pred HHHHHHCCC--cEEEEccCCccCCc--------ccCHHH-------------------------------HHHH-----H
Q 012545 206 SAALKINNI--DVSMVYPEPWCMPR--------LFTADI-------------------------------AAFY-----E 239 (461)
Q Consensus 206 a~~l~~~g~--~Vtli~~~~~~~~~--------~~~~~~-------------------------------~~~~-----~ 239 (461)
+..|.+.+. +|+++.|++.+.+. .|+++. .+.+ +
T Consensus 206 ~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~ 285 (341)
T PF13434_consen 206 FLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYE 285 (341)
T ss_dssp HHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHH
Confidence 999988764 89999998765432 233322 1111 1
Q ss_pred HHH-HhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-----CcEEecCEEEEccCCC
Q 012545 240 GYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-----GRTLEADIVVVGVGGR 289 (461)
Q Consensus 240 ~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-----G~~i~aD~vi~a~G~~ 289 (461)
+.+ .+..++++.+++|++++..+++. ..+.+.+ ..++++|.||+|||++
T Consensus 286 ~~v~g~~~~~l~~~~~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 286 QRVSGRGRLRLLPNTEVTSAEQDGDGG-VRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp HHHHT---SEEETTEEEEEEEEES-SS-EEEEEEETTT--EEEEEESEEEE---EE
T ss_pred HHhcCCCCeEEeCCCEEEEEEECCCCE-EEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 111 23357899999999999866433 3455543 2478999999999974
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-16 Score=154.29 Aligned_cols=241 Identities=18% Similarity=0.252 Sum_probs=148.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC--------cccc--cccCCCCCCCCCCceee
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP--------ALSK--AYLFPEGTARLPGFHVC 69 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~--~~~~~~~~~~~~~~~~~ 69 (461)
|+..++|+|||||+|||++|+.|.+.|++ ++++|+.+... |..+ .+-+ ....+.....++.++..
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCc
Confidence 34578999999999999999999999988 99999997632 1111 0000 00111122223333222
Q ss_pred cCC--------CCCCCCHhHHHHcCc--EEEcCCeEEEEeCCCC---EEEcCCC----cEEecCEEEEccCCC--ccccc
Q 012545 70 VGS--------GGERLLPEWYKEKGI--ELILSTEIVRADIASK---TLLSATG----LIFKYQILVIATGST--VSITS 130 (461)
Q Consensus 70 ~~~--------~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~---~v~~~~~----~~~~~d~liiAtG~~--~~~~~ 130 (461)
... +...++.+++++.++ .+.+++++..++...+ .|.+.++ ++.-||.|++|||-. |.+|.
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence 110 112234455566665 3777888888876652 3444333 367899999999966 88887
Q ss_pred cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHH
Q 012545 131 LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 210 (461)
Q Consensus 131 ~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~ 210 (461)
+||.. +.. ++| .++++.+......+ ..++|+|||.|.+|.|++..++
T Consensus 160 ~~g~~--------------------~~~--f~G----~~iHS~~Yk~~e~f-------~~k~VlVIG~g~SG~DIs~d~~ 206 (448)
T KOG1399|consen 160 IPGPG--------------------IES--FKG----KIIHSHDYKSPEKF-------RDKVVLVVGCGNSGMDISLDLL 206 (448)
T ss_pred CCCCc--------------------hhh--cCC----cceehhhccCcccc-------cCceEEEECCCccHHHHHHHHH
Confidence 77731 011 343 35555555544333 5799999999999999999999
Q ss_pred HCCCcEEEEccC--CccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 211 INNIDVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 211 ~~g~~Vtli~~~--~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
....+|++..+. ....+. .. ...++..+. .+..+.. ++ .+.++++....+|.+|+|||+
T Consensus 207 ~~ak~v~~~~~~~~~~~~~~-----------~~-~~~~~~~~~--~i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy 267 (448)
T KOG1399|consen 207 RVAKEVHLSVVSPKVHVEPP-----------EI-LGENLWQVP--SIKSFTE--DG---SVFEKGGPVERVDRIIFCTGY 267 (448)
T ss_pred HhccCcceeeeccccccccc-----------ce-eecceEEcc--ccccccC--cc---eEEEcCceeEEeeeEEEeeee
Confidence 888888876541 000000 00 011222222 2444443 33 355677778899999999998
Q ss_pred CCChhhhhc
Q 012545 289 RPLISLFKG 297 (461)
Q Consensus 289 ~p~~~~~~~ 297 (461)
.-...++..
T Consensus 268 ~y~fPfl~~ 276 (448)
T KOG1399|consen 268 KYKFPFLET 276 (448)
T ss_pred Eeecceecc
Confidence 877666653
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=139.61 Aligned_cols=291 Identities=18% Similarity=0.217 Sum_probs=168.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
.+++|.|||+||||+++|..|.++ +++.+|+++|+.+. ||. +....-..+.|..+.. .+.+...++
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~Pv-PFG-------LvRyGVAPDHpEvKnv-----intFt~~aE 84 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPV-PFG-------LVRYGVAPDHPEVKNV-----INTFTKTAE 84 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCc-ccc-------eeeeccCCCCcchhhH-----HHHHHHHhh
Confidence 457999999999999999999996 45677999999985 322 2222222333332221 123455566
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.+..++-+..+ ++.+.+.+ -+-.||.+|||.|+... +++. +||
T Consensus 85 ~~rfsf~gNv~v------G~dvsl~e-L~~~ydavvLaYGa~~d--------------------------R~L~---IPG 128 (468)
T KOG1800|consen 85 HERFSFFGNVKV------GRDVSLKE-LTDNYDAVVLAYGADGD--------------------------RRLD---IPG 128 (468)
T ss_pred ccceEEEeccee------cccccHHH-HhhcccEEEEEecCCCC--------------------------cccC---CCC
Confidence 667777766443 22233321 13589999999998762 4554 888
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHH-------hcCCCcEEEECCCHHHHHHHHHHHHC----------------------CC
Q 012545 164 ADAKNIFYLREIDDADKLVEAIK-------AKKNGKAVVVGGGYIGLELSAALKIN----------------------NI 214 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~-------~~~~~~v~VvG~G~~g~e~a~~l~~~----------------------g~ 214 (461)
.+..+|++.+.+. .+..-+. .....+|+|||.|++++++|..|..- -.
T Consensus 129 e~l~~V~Sarefv---~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~Vk 205 (468)
T KOG1800|consen 129 EELSGVISAREFV---GWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVK 205 (468)
T ss_pred cccccceehhhhh---hhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcc
Confidence 8888888654432 2211110 11467899999999999999988531 13
Q ss_pred cEEEEccCCccCCccc-------------------------------------CHHHHHHHHHHHHhc---------CcE
Q 012545 215 DVSMVYPEPWCMPRLF-------------------------------------TADIAAFYEGYYANK---------GIK 248 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~---------GV~ 248 (461)
+|+++.|.......+. -+++.+.+.+.++++ +.+
T Consensus 206 dV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k 285 (468)
T KOG1800|consen 206 DVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSK 285 (468)
T ss_pred eEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccc
Confidence 5778777643211100 012233333333331 110
Q ss_pred ---EEcCCcEEEEEecCCCCEEE-------------EEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCC
Q 012545 249 ---IIKGTVAVGFTTNADGEVKE-------------VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF 311 (461)
Q Consensus 249 ---v~~~~~v~~i~~~~~g~~~~-------------v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~ 311 (461)
+.+.....+|..++++ +.. +.+.+-++++|++++.++|++... ++.++.. ++.++.-|.+
T Consensus 286 ~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~p--v~~gipFd~~kgvv~n~~ 362 (468)
T KOG1800|consen 286 QWHLRFFRTPGAILPGADG-VSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVP--VDSGIPFDDKKGVVPNVN 362 (468)
T ss_pred hhHHHHhcCHHHhccCccc-ccceEEEeeeehhhcccccCceEeeccceeEeeeeecccc--cCCCCCcccccCcccCCC
Confidence 1111112223222111 111 111222579999999999986432 2334444 3344554554
Q ss_pred CCC----CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 312 FKT----SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 312 ~~t----~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.+. -.|++|++|.|..+|. +.++.+++++..+|+.|...
T Consensus 363 GrV~~s~~~pglY~sGW~k~GP~---------GvIattm~dAf~v~d~I~qD 405 (468)
T KOG1800|consen 363 GRVLVSGCSPGLYASGWVKHGPT---------GVIATTMQDAFEVADTIVQD 405 (468)
T ss_pred ceEEeeccCCceEEEeeeccCCc---------ceeeehhhhHHHHHHHHHHH
Confidence 443 3599999999999875 35566667777777777654
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=143.59 Aligned_cols=278 Identities=15% Similarity=0.180 Sum_probs=146.0
Q ss_pred CCeEEEEcCChHHHHHHHHHH-HcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~-~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
.++|+||||||||++||.+|. +.|++ |+|+|+.+.. | +++...-....+.... ....+...+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~p-g-------GLvR~GVaPdh~~~k~-----v~~~f~~~~~ 102 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNP-Y-------GLIRYGVAPDHIHVKN-----TYKTFDPVFL 102 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCC-c-------cEEEEeCCCCCccHHH-----HHHHHHHHHh
Confidence 578999999999999999765 55766 9999999752 2 1221111111111100 0011222344
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC-
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE- 162 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~- 162 (461)
..+++++.+..+ +..+..++= .-.||.||+|+|+.+.-++|++- + ... .+.
T Consensus 103 ~~~v~f~gnv~V------G~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~--------~------------~~~-~~~G 154 (506)
T PTZ00188 103 SPNYRFFGNVHV------GVDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQ--------D------------EDK-AVSG 154 (506)
T ss_pred hCCeEEEeeeEe------cCccCHHHH-HhcCCEEEEEcCCCCCCCCcccc--------c------------cee-eecc
Confidence 567777654322 112222221 23899999999998732221000 0 000 000
Q ss_pred CCC----CCCEEEeCCH-------HHH---HHHHHHHHhc-CCCcEEEECCCHHHHHHHHHHH-----------------
Q 012545 163 GAD----AKNIFYLREI-------DDA---DKLVEAIKAK-KNGKAVVVGGGYIGLELSAALK----------------- 210 (461)
Q Consensus 163 g~~----~~~v~~~~~~-------~~~---~~l~~~l~~~-~~~~v~VvG~G~~g~e~a~~l~----------------- 210 (461)
|.+ ..++|..+++ .+. ......+... ..++++|||.|++++++|..|.
T Consensus 155 Ge~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~ 234 (506)
T PTZ00188 155 GETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLK 234 (506)
T ss_pred ccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHH
Confidence 111 1233322111 000 0111111111 3578999999999999999753
Q ss_pred ---HCC-CcEEEEccCCccCCcc----------------------c------CH-----H--------HHHHHHHHHH--
Q 012545 211 ---INN-IDVSMVYPEPWCMPRL----------------------F------TA-----D--------IAAFYEGYYA-- 243 (461)
Q Consensus 211 ---~~g-~~Vtli~~~~~~~~~~----------------------~------~~-----~--------~~~~~~~~l~-- 243 (461)
+.+ .+|+++.|....-..+ + +. . ..+.+.+...
T Consensus 235 ~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~ 314 (506)
T PTZ00188 235 VIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVE 314 (506)
T ss_pred HHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhc
Confidence 223 3578877764321100 0 00 0 1112222221
Q ss_pred --------hcCcEEEcCCcEEEEEecCCCCEEEEEeC-----------CC--cEEecCEEEEccCCCCChhhhhcccccC
Q 012545 244 --------NKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DG--RTLEADIVVVGVGGRPLISLFKGQVAEN 302 (461)
Q Consensus 244 --------~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~G--~~i~aD~vi~a~G~~p~~~~~~~~~~~~ 302 (461)
.+-+.+++....++|.. +++++..+++. .| ++++||+|+-++|++...- + ++..+
T Consensus 315 ~~~~~~~~~r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~--~-g~pFd 390 (506)
T PTZ00188 315 KNKEFYKTYKIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF--A-ENLYN 390 (506)
T ss_pred cCccCCCCceEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC--C-CCCcc
Confidence 13366777888888875 34677777765 23 3689999999999876421 1 22222
Q ss_pred CCcEEeCCCCCC--CCCCEEEeCcccccCccc
Q 012545 303 KGGIETDDFFKT--SADDVYAVGDVATFPMKL 332 (461)
Q Consensus 303 ~g~i~vd~~~~t--~~~~vya~GD~~~~~~~~ 332 (461)
+. +.. ...++ ..|++|++|.+..+|...
T Consensus 391 ~~-~~n-~~grv~~~~~g~Y~~GWiKrGP~Gv 420 (506)
T PTZ00188 391 QS-VQM-FKEDIGQHKFAIFKAGWFDKGPKGN 420 (506)
T ss_pred cc-CCC-CCCcccCCCCCcEEeeecCcCCCce
Confidence 11 221 11222 379999999999988653
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=137.26 Aligned_cols=128 Identities=20% Similarity=0.356 Sum_probs=83.6
Q ss_pred CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccC
Q 012545 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVG 287 (461)
Q Consensus 213 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G 287 (461)
..+|++....-+- ++...-+.+.+.-++.||+++.+ ++.+|...+++. ..|...| | .++++|+||+++|
T Consensus 400 d~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~-l~V~~EdTl~g~~~e~~~DLVVLa~G 473 (622)
T COG1148 400 DTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKK-LIVRVEDTLTGEVKEIEADLVVLATG 473 (622)
T ss_pred CcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCe-eEEEEEeccCccceecccceEEEeec
Confidence 3567766543332 34445556666666889999977 567777655665 2344433 3 4789999999999
Q ss_pred CCCChhhh---h-ccccc-CCCcEEeC-CCCC---CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 288 GRPLISLF---K-GQVAE-NKGGIETD-DFFK---TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 288 ~~p~~~~~---~-~~~~~-~~g~i~vd-~~~~---t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
..|....- + .++.. +.|++... ..++ |+.++||.+|-|.++ +.+..+..||..||....
T Consensus 474 mep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP-----------kdI~~siaqa~aAA~kA~ 541 (622)
T COG1148 474 MEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP-----------KDIADSIAQAKAAAAKAA 541 (622)
T ss_pred cccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC-----------ccHHHHHHHhHHHHHHHH
Confidence 99855422 1 24444 57887766 4454 689999999977765 456666777776666544
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=102.67 Aligned_cols=80 Identities=34% Similarity=0.634 Sum_probs=74.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 271 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~ 271 (461)
+++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.|++.||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG-FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 5899999999999999999999999999999999954 89999999999999999999999999999986666 55 998
Q ss_pred CCC
Q 012545 272 KDG 274 (461)
Q Consensus 272 ~~G 274 (461)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 886
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-11 Score=116.56 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=102.6
Q ss_pred EECCCHHHHHHHHHHH-HCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC
Q 012545 195 VVGGGYIGLELSAALK-INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 273 (461)
Q Consensus 195 VvG~G~~g~e~a~~l~-~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~ 273 (461)
|.|-+.. .++-..|. ..|..|..+--.|. ...+..+.+.+.+.+++.|++++.+.+|.++.. +++++..+.+.+
T Consensus 229 vlG~~~~-~~~~~~L~~~~g~~v~E~ptlPP---Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~ 303 (419)
T TIGR03378 229 CFGLGDG-LELLRELEQATGLTLCELPTMPP---SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRN 303 (419)
T ss_pred eeCCCCh-HHHHHHHHHHHCCCEEeCCCCCC---CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecC
Confidence 3454432 23333333 35888876644333 335788899999999999999999999999886 356666777777
Q ss_pred C--cEEecCEEEEccCCCCChhhh-----------hcccc--------------c----CCCcEEeCCCCCC-----CCC
Q 012545 274 G--RTLEADIVVVGVGGRPLISLF-----------KGQVA--------------E----NKGGIETDDFFKT-----SAD 317 (461)
Q Consensus 274 G--~~i~aD~vi~a~G~~p~~~~~-----------~~~~~--------------~----~~g~i~vd~~~~t-----~~~ 317 (461)
+ .++.+|.+|+|+|..-...++ ...+. . ..-+|.+|+++|. ..+
T Consensus 304 g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~ 383 (419)
T TIGR03378 304 HRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIE 383 (419)
T ss_pred CccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccc
Confidence 6 489999999999976112111 11110 0 1236889999994 389
Q ss_pred CEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 318 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 318 ~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
|+||+|-+.+++++..... -...|...|-.||++|+
T Consensus 384 Nl~a~G~vL~G~d~~~~gc----G~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 384 NLYAIGAVLGGYDPIFEGC----GSGVAVSTALHAAEQII 419 (419)
T ss_pred cceEechhhcCCChHhcCC----CchhHHHHHHHHHHhhC
Confidence 9999999999887643211 11256677788887763
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=117.10 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=61.6
Q ss_pred HHHHHHHCCCcEEEEccCCccCCc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 205 LSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 205 ~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
+...+.++|.+.. .....+.++. .-..++.+.+.+.+++.||+++++++|.+++. ++....+.+++|+++.||.+|
T Consensus 84 ~i~~~e~~Gi~~~-e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~--~~~~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 84 FIDWVEGLGIALK-EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEK--DDSGFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHhcCCeeE-EccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEe--cCceEEEEcCCCCEEEccEEE
Confidence 3344455565533 3334455554 34568889999999999999999999999998 334578999999999999999
Q ss_pred EccCC
Q 012545 284 VGVGG 288 (461)
Q Consensus 284 ~a~G~ 288 (461)
+|+|-
T Consensus 161 lAtGG 165 (408)
T COG2081 161 LATGG 165 (408)
T ss_pred EecCC
Confidence 99993
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-09 Score=105.28 Aligned_cols=313 Identities=17% Similarity=0.236 Sum_probs=163.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCcccccccCCCC--CCCCCC----ceeecCCC--
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEG--TARLPG----FHVCVGSG-- 73 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~-- 73 (461)
++|+|||+|+.|+++|.+|.+.--....|.|+|+.+.. +|+.......+..+.. ....|. |..|.-..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999974434459999998763 3442111000000000 000011 11111100
Q ss_pred -----------CC-------------CCCHhHHHHcC---cEEEcCCeEEEEeCC---C-CEEEcCCCcEEecCEEEEcc
Q 012545 74 -----------GE-------------RLLPEWYKEKG---IELILSTEIVRADIA---S-KTLLSATGLIFKYQILVIAT 122 (461)
Q Consensus 74 -----------~~-------------~~~~~~~~~~~---v~~~~~~~v~~i~~~---~-~~v~~~~~~~~~~d~liiAt 122 (461)
.. ..+..++++.. +.++.. +++.+... . ..+...+|....+|-+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 00 01111222222 555554 55555544 1 24666788888999999999
Q ss_pred CCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHH
Q 012545 123 GSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIG 202 (461)
Q Consensus 123 G~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g 202 (461)
|..+-.++. .. .. +++.. .-+-..........+ . ...+|+|+|+|.+.
T Consensus 161 gh~~~~~~~--~~------------------~~-----~~~~~-~~ia~~~~~~~ld~v----~--~~drVli~GsgLt~ 208 (474)
T COG4529 161 GHSAPPADP--AA------------------RD-----LKGSP-RLIADPYPANALDGV----D--ADDRVLIVGSGLTS 208 (474)
T ss_pred cCCCCCcch--hh------------------hc-----cCCCc-ceeccccCCcccccc----c--CCCceEEecCCchh
Confidence 976621110 00 00 11110 001111111111111 1 24569999999999
Q ss_pred HHHHHHHHHCCC--cEEEEccCCccC---------C--cccCHHH------HHHHHHHH---------------------
Q 012545 203 LELSAALKINNI--DVSMVYPEPWCM---------P--RLFTADI------AAFYEGYY--------------------- 242 (461)
Q Consensus 203 ~e~a~~l~~~g~--~Vtli~~~~~~~---------~--~~~~~~~------~~~~~~~l--------------------- 242 (461)
++....|.++|. ++|++.|....- + ...+..+ ...+...|
T Consensus 209 ~D~v~~l~~~gh~g~It~iSRrGl~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~ 288 (474)
T COG4529 209 IDQVLVLRRRGHKGPITAISRRGLVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQG 288 (474)
T ss_pred HHHHHHHhccCCccceEEEeccccccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhh
Confidence 999999999875 689988874210 0 0000000 00110111
Q ss_pred -----------------------------------------HhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC-cEEe
Q 012545 243 -----------------------------------------ANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG-RTLE 278 (461)
Q Consensus 243 -----------------------------------------~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G-~~i~ 278 (461)
...|.--+.-.++..|.....|..+.+... +. +++.
T Consensus 289 ~~~wq~l~~~er~rf~rH~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~ 368 (474)
T COG4529 289 QWIWQNLPAVERRRFERHLRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELD 368 (474)
T ss_pred hHHHHhCCHHHHHHHHHhcccHHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceee
Confidence 111222222335566665455533333322 21 4689
Q ss_pred cCEEEEccCCCCChh-----hh----hccccc---CCCcEEeCCCCCC------CCCCEEEeCcccccCccccCcceeec
Q 012545 279 ADIVVVGVGGRPLIS-----LF----KGQVAE---NKGGIETDDFFKT------SADDVYAVGDVATFPMKLYREMRRVE 340 (461)
Q Consensus 279 aD~vi~a~G~~p~~~-----~~----~~~~~~---~~g~i~vd~~~~t------~~~~vya~GD~~~~~~~~~~~~~~~~ 340 (461)
+|.||-|+|..+... ++ +.++.. ...+|.|++..+. ..+++||+|-.+.+... +. .
T Consensus 369 ~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~---ei---~ 442 (474)
T COG4529 369 VDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFW---EI---D 442 (474)
T ss_pred eeEEEEcCCcCcCCCccchHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchh---hh---c
Confidence 999999999654322 22 445544 3678999988774 47899999999876521 11 1
Q ss_pred cHHHHHHHHHHHHHHHh
Q 012545 341 HVDHARKSAEQAVKTIM 357 (461)
Q Consensus 341 ~~~~A~~~g~~aa~~i~ 357 (461)
.+..-..|+..+|..++
T Consensus 443 ~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 443 GVPDVRVQAARLAAQLA 459 (474)
T ss_pred cChHHHHHHHHHHHHHh
Confidence 22233456666777766
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=112.68 Aligned_cols=75 Identities=23% Similarity=0.205 Sum_probs=48.9
Q ss_pred EccCCCCChhhhhccccc--CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcce-eeccHHHHHHHHHHHHHHHhccc
Q 012545 284 VGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 284 ~a~G~~p~~~~~~~~~~~--~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
...|..|..+.++.-... ..|+|.||.+.||+.|++||+|.|+.... .|..+ ...+.-.+.--|..+|++|.+..
T Consensus 320 ~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGl--HGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 320 LKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGL--HGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred HHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeeeccccc--ccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 345666555444332222 57999999999999999999999996421 11110 11344566667788888888764
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=105.93 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcE-EecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~-i~aD~vi~a~G~~p~ 291 (461)
..++...+.+.+.++|++++++++|+.|+..++| +..+.+.+|++ ++|+.||.|.|....
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence 3456777788888889999999999999986565 56788888876 999999999997653
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=113.84 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=55.4
Q ss_pred HHHHHHHHCCCcEEEEccCCccCCcc-cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEE
Q 012545 204 ELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 282 (461)
Q Consensus 204 e~a~~l~~~g~~Vtli~~~~~~~~~~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~v 282 (461)
++...+.+.|.... ++...++.|.. -..++.+.+.+.+++.||+++++++|.++.. +++....|+++++.++.||.|
T Consensus 81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEE
Confidence 55567777777644 44555555542 2457778889999999999999999999987 345557888877889999999
Q ss_pred EEccCCCC
Q 012545 283 VVGVGGRP 290 (461)
Q Consensus 283 i~a~G~~p 290 (461)
|+|+|-..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999654
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-08 Score=101.77 Aligned_cols=119 Identities=14% Similarity=0.253 Sum_probs=72.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-cc-ccc--c--CCCCCCCCCCceeecC-------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LS-KAY--L--FPEGTARLPGFHVCVG------- 71 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-~~-~~~--~--~~~~~~~~~~~~~~~~------- 71 (461)
.+||+||||||||+++|..|++.|++ |+|+|+.+...+.+.. .. ..+ + ...-...++.......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 58999999999999999999999987 9999998654332210 00 000 0 0000000111000000
Q ss_pred -CC----CC----CCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCcc
Q 012545 72 -SG----GE----RLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 72 -~~----~~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.. .. ..+.+.+.+.|++++. .+|.+++.... .|.+.+|.++++|.||.|+|..+.
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 00 00 1122223457899875 48888876554 467788888999999999998774
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=111.76 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=32.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+|||+|.||++||.++++.|.+ |+|+||...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~ 50 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL 50 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence 368999999999999999999998876 999999864
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-09 Score=97.11 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=98.5
Q ss_pred HHHHHHHHHHH-CCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcE--E
Q 012545 201 IGLELSAALKI-NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT--L 277 (461)
Q Consensus 201 ~g~e~a~~l~~-~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~--i 277 (461)
-..++-..|+. .+..+..+-..| |..+.-.+.+.+.+.+++.|.-++.+-+|...+. .++++..|.+.+... +
T Consensus 229 d~~~~~~aL~~~~~~~l~elPtlP---PSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~ 304 (421)
T COG3075 229 DNDELWDALNDVLGLALFELPTLP---PSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPL 304 (421)
T ss_pred CcHHHHHHHHHHhCCceeecCCCC---cchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCC
Confidence 33444455554 366666553322 3335667888999999999999999999999887 578888899888754 6
Q ss_pred ecCEEEEccCCCCChh-----------hhh--------------ccccc----CCCcEEeCCCCCCC-----CCCEEEeC
Q 012545 278 EADIVVVGVGGRPLIS-----------LFK--------------GQVAE----NKGGIETDDFFKTS-----ADDVYAVG 323 (461)
Q Consensus 278 ~aD~vi~a~G~~p~~~-----------~~~--------------~~~~~----~~g~i~vd~~~~t~-----~~~vya~G 323 (461)
.+|..|+|+|.--..- .+. ..... ..-++.+|+++|.+ ..|+||+|
T Consensus 305 ~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiG 384 (421)
T COG3075 305 RADFYVLASGSFFSKGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIG 384 (421)
T ss_pred ChhHeeeeccccccccchhhhhhhhcchhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHH
Confidence 7899999999411110 111 11000 12357888888863 67999999
Q ss_pred cccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 324 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 324 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.+.++.++...... ...|...|..||+.|++.
T Consensus 385 avlgGfdpi~egcG----sGVaivta~~aa~qi~~~ 416 (421)
T COG3075 385 AVLGGFDPIAEGCG----SGVAIVTALHAAEQIAER 416 (421)
T ss_pred HHhcCCcHHHhcCC----cchHHHHHHHHHHHHHHH
Confidence 99998876432111 123445666677777654
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=111.45 Aligned_cols=55 Identities=25% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCcce-eeccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+ .-.....|...|+.|++++...
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGLH---GANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccccC---cccccchhHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999973 221 1111 0135667888899999998753
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=111.80 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=39.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~ 358 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+. -.....+...|+.|++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~h---G~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNGFH---GANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccCCC---CCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999974 221 11111 13455677788999998865
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9e-09 Score=105.20 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
++|+|||||++|+++|.+|.+.+ ...+|+|+|++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~-~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQ-TPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcC-CCCcEEEEecCCC
Confidence 58999999999999999999865 3456999999754
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.7e-09 Score=106.83 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=40.4
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+. -.+...+...|+.|++++...
T Consensus 331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 331 LMGGVKTNLDGETSIPGLYAIGEVACTGVH---GANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred EcCCEEECCCCcccCCCeEEcccccccccC---CCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999974 221 11111 135667788899999998654
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=110.76 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=77.8
Q ss_pred CCCcEEEECCCH--HHHHHHHHHHHCCCcEEEEccCCccCCcc-------------cCHHHHHHHHHHHHhcCcEEEcCC
Q 012545 189 KNGKAVVVGGGY--IGLELSAALKINNIDVSMVYPEPWCMPRL-------------FTADIAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 189 ~~~~v~VvG~G~--~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------------~~~~~~~~~~~~l~~~GV~v~~~~ 253 (461)
.++++.|+|+++ ++.+++..+...+.+++++.+..+++... -...+.+.+.+.+++.|++++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467888999998 89999999999998888766554444320 124577778888899999999999
Q ss_pred cEEEEEecCCCCEEEEEeCC--Cc-EEecC-EEEEccCCCCCh
Q 012545 254 VAVGFTTNADGEVKEVKLKD--GR-TLEAD-IVVVGVGGRPLI 292 (461)
Q Consensus 254 ~v~~i~~~~~g~~~~v~~~~--G~-~i~aD-~vi~a~G~~p~~ 292 (461)
.|+++.. +++++.+|...+ ++ .+.++ .||+|+|..++.
T Consensus 236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence 9999987 367777776643 33 47785 799999976644
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-08 Score=101.38 Aligned_cols=39 Identities=36% Similarity=0.569 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|-+..+||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~~~ 39 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKVFP 39 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 434578999999999999999999998887 999999854
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=105.80 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=36.5
Q ss_pred CCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 303 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 303 ~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
.|+|.||..++|++|++||+|||+.... .....|...|+.|+.++..
T Consensus 356 ~Ggi~~d~~~~t~i~gl~a~Ge~~~~~~---------~~~~~~~~~G~~a~~~~~~ 402 (554)
T PRK08275 356 ASGVWVNEKAETTVPGLYAAGDMASVPH---------NYMLGAFTYGWFAGENAAE 402 (554)
T ss_pred cCcEEECCCCccCCCCEEECcccCCchh---------HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999975332 3455677778887777654
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-09 Score=108.76 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~ 42 (461)
.+||||||+|.||++||.++++. |.+ |+|+||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECCCc
Confidence 47999999999999999999998 776 999999864
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-08 Score=99.56 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+..+.+.+.+.+++.|++++.+++|.++... ++. ..|.+.+| ++.+|.||+|+|....
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCC-EEEeCEEEECCCcchH
Confidence 5677888889999999999999999999863 333 36777777 7999999999998653
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-09 Score=108.35 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcC---CCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQG---VKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g---~~~~~V~vie~~~~ 42 (461)
|+...+||+|||||.||++||.++++.| .+ |+|+||...
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~~~ 42 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKTQP 42 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcccC
Confidence 6667899999999999999999999987 55 999999864
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-07 Score=92.37 Aligned_cols=115 Identities=18% Similarity=0.327 Sum_probs=68.7
Q ss_pred eEEEEcCChHHHHHHHHH--HHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCC-------CCCCCCceeecCCC----
Q 012545 7 KYVILGGGVSAGYAAREF--AKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-------TARLPGFHVCVGSG---- 73 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L--~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---- 73 (461)
||||||||+||+++|.+| ++.|.+ |+|||+++..+|.... ...++.... ...++.........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 899999999999999999 555555 9999998765333221 111111110 01111111111000
Q ss_pred -C-------CCCCH----hHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCc
Q 012545 74 -G-------ERLLP----EWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 74 -~-------~~~~~----~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
. ...+. +.+...++ .+.++.|.+++.... .+.+.+|.+++++.||-|+|..+
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 0 00111 22222344 455569999987765 57788898999999999999655
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=112.22 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=46.0
Q ss_pred cCCCCChhhhhc-----ccc--cCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 286 VGGRPLISLFKG-----QVA--ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 286 ~G~~p~~~~~~~-----~~~--~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
.|..|+.+.++. ... ...|+|.||.+++|++|++||+|||+.... .+...|...|+.|+.++..
T Consensus 337 ~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GLfAaGE~a~~~~---------nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 337 RGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLACVPH---------NYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cCCCcccccceecccccccccCCCcceEEecCCCcccCCCeEechhccCcch---------hhhhhHHHhHHHHHHHHHH
Confidence 467776665542 111 145899999999999999999999986543 3455677778888777754
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-08 Score=104.08 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=46.8
Q ss_pred cCCCCChhhhhccccc--CCCcEEeCCCCCCCCCCEEEeCcccccCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 286 VGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 286 ~G~~p~~~~~~~~~~~--~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.|..|....++..... ..|+|.||.+.||++|++||+|+|+... ..|..+. -.....|...|+.|++++...
T Consensus 339 ~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 339 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred cCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 3555554443322222 5799999999999999999999997421 0111111 134567778889998888754
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=9e-09 Score=107.06 Aligned_cols=106 Identities=16% Similarity=0.080 Sum_probs=79.0
Q ss_pred CCCcEEEECCCHHHHHHHHH-------HHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec
Q 012545 189 KNGKAVVVGGGYIGLELSAA-------LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 261 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~-------l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 261 (461)
.++.++++|+++++++++.. +.+.+.+|+++...+..... ++..+...+.+.+++.|++++++++++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 35678899999999998865 56667777776554444333 5777888899999999999999999999987
Q ss_pred CCCCEEEEEeC-CCc--EEecC-EEEEccC-CCCChhhhh
Q 012545 262 ADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 296 (461)
Q Consensus 262 ~~g~~~~v~~~-~G~--~i~aD-~vi~a~G-~~p~~~~~~ 296 (461)
+++++.+|... +|+ .+.++ .||+|+| +.+|.++++
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 35677776653 443 47785 6888776 667666554
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-08 Score=102.92 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=40.9
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+. -.....|...|+.|++++...
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLH---GANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred ecCCeeECCCCccccCCEEecccccccccC---CCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999973 221 11111 135667888899999998754
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=103.35 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+..+.+.+.+.+++.|++++.+++|+++.. +++.+.+|.+.+|+ +.+|.||+|+|...+.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEeccccccee
Confidence 678888999999999999999999999997 45556669999996 9999999999975433
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=106.34 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=40.3
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccccCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.+|.+.||++|++||+|+|+... ..|..+. -.....|...|+.|++++...
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999997421 0111110 135667788889998888754
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=105.50 Aligned_cols=55 Identities=27% Similarity=0.241 Sum_probs=39.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+. -.....|...|+.|++++...
T Consensus 340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G~h---Ganrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 340 HMGGIAVDADGRSSLPGLWAAGEVASTGLH---GANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred EcCCEEECCCCccccCCEEecccccccCCC---cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999973 221 11110 124556777889998888654
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-08 Score=103.67 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=40.3
Q ss_pred CCCcEEeCCCCC----CCCCCEEEeCcccccCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFK----TSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~----t~~~~vya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||...| |++|++||+|+|+.... .|..+. -.....|...|+.|++++...
T Consensus 341 t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~--hGa~rl~g~sl~~a~v~G~~Ag~~aa~~ 401 (566)
T TIGR01812 341 SMGGIPTDYTGRVICETIVKGLFAAGECACVSV--HGANRLGGNSLLELVVFGRIAGEAAAEY 401 (566)
T ss_pred cCCCeEECcCcccccCcccCCeeecccccccCc--CcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 579999999999 99999999999985210 111110 135667888899998888653
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.6e-09 Score=103.90 Aligned_cols=124 Identities=22% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cc----ccccC----CCCCCCCC---Cc
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LS----KAYLF----PEGTARLP---GF 66 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---~~----~~~~~----~~~~~~~~---~~ 66 (461)
|.+.++||+||||||||++||..|++.|++ |+|+|+.+......++ +. ..++. .....+.. .+
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence 555679999999999999999999999987 9999998753322110 00 00000 00000000 00
Q ss_pred ee---------ec--C---CC---CC--------CCCHhHHHHcCcEEEcCCeEEEEeCCCCEE--EcCCCcEEecCEEE
Q 012545 67 HV---------CV--G---SG---GE--------RLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGLIFKYQILV 119 (461)
Q Consensus 67 ~~---------~~--~---~~---~~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~li 119 (461)
.. .. . .. .. ..+.+..++.|++++.+++|+++..+...+ ...++.++.+|.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI 157 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI 157 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence 00 00 0 00 00 012223345799999999999986544432 33456679999999
Q ss_pred EccCCCcc
Q 012545 120 IATGSTVS 127 (461)
Q Consensus 120 iAtG~~~~ 127 (461)
.|+|....
T Consensus 158 ~A~G~~s~ 165 (428)
T PRK10157 158 LADGVNSI 165 (428)
T ss_pred EEeCCCHH
Confidence 99998763
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=101.79 Aligned_cols=123 Identities=19% Similarity=0.264 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--cc-------------cccc-----------
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS-------------KAYL----------- 55 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--~~-------------~~~~----------- 55 (461)
|.+.+||+|||||++|+++|..|++.|++ |+|+|+.+...-.... +. ..+.
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL 77 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence 55688999999999999999999999987 9999998642110000 00 0000
Q ss_pred CCCCCCCCCCcee-ecC-C-----------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEE
Q 012545 56 FPEGTARLPGFHV-CVG-S-----------GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVI 120 (461)
Q Consensus 56 ~~~~~~~~~~~~~-~~~-~-----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lii 120 (461)
+......+..+.. ... . .....+.+.+.+.+++++.++++..++.+.. .+.+.+++++.+|.+|.
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence 0000000000000 000 0 0001122333457899999999999876554 35667888899999999
Q ss_pred ccCCCcc
Q 012545 121 ATGSTVS 127 (461)
Q Consensus 121 AtG~~~~ 127 (461)
|+|..+.
T Consensus 158 AdG~~s~ 164 (375)
T PRK06847 158 ADGLYSK 164 (375)
T ss_pred CcCCCcc
Confidence 9998773
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=102.65 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cc----ccccCCCC-----CCC-CCC--
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LS----KAYLFPEG-----TAR-LPG-- 65 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---~~----~~~~~~~~-----~~~-~~~-- 65 (461)
|++.++||+||||||||++||+.|++.|++ |+|+|+.+......++ ++ ..+ .+.. ..+ ...
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l-~~~~~~~~~i~~~~~~~~ 76 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAI-IPGFAASAPVERKVTREK 76 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHH-cccccccCCcccccccee
Confidence 555679999999999999999999999987 9999998753322111 00 001 0000 000 000
Q ss_pred c---------eeecCC-----------CC-CCC----CHhHHHHcCcEEEcCCeEEEEeCCCCEEE--cCCCcEEecCEE
Q 012545 66 F---------HVCVGS-----------GG-ERL----LPEWYKEKGIELILSTEIVRADIASKTLL--SATGLIFKYQIL 118 (461)
Q Consensus 66 ~---------~~~~~~-----------~~-~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~~~~~~~~d~l 118 (461)
+ ...... .. ... +.+..++.|++++.++.|+.+..++..+. ..++.++.+|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~V 156 (429)
T PRK10015 77 ISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVV 156 (429)
T ss_pred EEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEE
Confidence 0 000000 00 001 22334567999999999998876544332 234457999999
Q ss_pred EEccCCCc
Q 012545 119 VIATGSTV 126 (461)
Q Consensus 119 iiAtG~~~ 126 (461)
|+|+|...
T Consensus 157 I~AdG~~s 164 (429)
T PRK10015 157 ILADGVNS 164 (429)
T ss_pred EEccCcch
Confidence 99999866
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-08 Score=97.44 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
..+.+.+.+.+++.|++++.+++|++++.++++ ..+++++|+++.+|.||.|.|..+..
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIAADGAASTL 171 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEEecCCCchH
Confidence 456667777888889999999999999873333 45788888899999999999998754
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=100.96 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cccc----ccCCCCC---CCCCCcee------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LSKA----YLFPEGT---ARLPGFHV------ 68 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---~~~~----~~~~~~~---~~~~~~~~------ 68 (461)
.|||+||||||||++||+.|++.|++ |+|+|+.+...+..++ ++.. +...... ..+.+...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 79999999999999999999999976 9999998775554333 1110 1000000 00000000
Q ss_pred -ecCCC---C----CCC----CHhHHHHcCcEEEcCCeEEEEeCCCCE--E-EcCCCcEEecCEEEEccCCCc
Q 012545 69 -CVGSG---G----ERL----LPEWYKEKGIELILSTEIVRADIASKT--L-LSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 69 -~~~~~---~----~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~~~~~~~~~~d~liiAtG~~~ 126 (461)
.+... . ... +.+...+.|.+++.++.+..+..++.. + ...++.+++++.+|.|+|...
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 00000 0 111 233445689999999999988765533 2 223335799999999999876
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.1e-09 Score=110.49 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|....+||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~~~ 39 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLVPA 39 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCC---EEEEeCCCC
Confidence 555679999999999999999999999987 999999754
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=103.52 Aligned_cols=54 Identities=26% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~ 358 (461)
..|+|.+|.+.||++|++||+|+|+. ... |..+. -.+...+...|+.|+.++..
T Consensus 376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G~h---Ganrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 376 MCGGVRTGLQGETNVQGLYAAGEVACTGLH---GANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred eCCCeeECCCCceecCCEEecccccccCCC---CCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999974 221 11110 13566777888888888764
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-08 Score=93.06 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=81.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc---c--------CCc----ccCHHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
+++|||+|+.|+++|..|++.|.+|+++++.+. + .+. ..+.++.+.+.+.+++.|+++++ .+|+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997651 1 121 12367888889999999999998 8899
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
+++. ++....+++.+++++.+|.+|+|+|.+|+...+
T Consensus 81 ~v~~--~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 81 KVDL--SDRPFKVKTGDGKEYTAKAVIIATGASARKLGI 117 (300)
T ss_pred EEEe--cCCeeEEEeCCCCEEEeCEEEECCCCCcccCCC
Confidence 9987 333356777888899999999999998865433
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-07 Score=92.71 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=55.1
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
-..++.+.+.+.++..|.+++++++|++|..++++++..|++++|+++.|+.||......|..
T Consensus 230 G~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 230 GLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDK 292 (443)
T ss_pred CHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccc
Confidence 356788999999999999999999999998755677788999999999999999988887763
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=103.93 Aligned_cols=53 Identities=26% Similarity=0.171 Sum_probs=37.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHh
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~ 357 (461)
..|+|.||.+.||++|++||+|+|+. ..+ |..+- -.....+..-|+.|+..+.
T Consensus 346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G~h---GanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 346 WMGGVVTDLNNQTSIPGLYAVGETASTGVH---GANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred cCCCeeECCCCcccCCCEEECccccccCCC---cccchHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999974 221 11110 0234566677888888775
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-08 Score=102.16 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=29.5
Q ss_pred eEEEEcCChHHHHHHHHHH----HcCCCCCcEEEEeCCCC
Q 012545 7 KYVILGGGVSAGYAAREFA----KQGVKPGELAIISKEAV 42 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~----~~g~~~~~V~vie~~~~ 42 (461)
||||||||.|||+||++++ +.|.+ |+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEccCC
Confidence 7999999999999999998 56776 999999864
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=101.57 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=76.5
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCCc-cc---------cccc--------------
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERPA-LS---------KAYL-------------- 55 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~~-~~---------~~~~-------------- 55 (461)
|.+..+||+||||||+|+++|..|++.|.+ |+|+|+.+... ..+.. +. .+++
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~ 77 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS 77 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence 656679999999999999999999999987 99999987421 11110 00 0000
Q ss_pred --CCCCC-C-------CCCCc----eeecCCCC-CCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEE
Q 012545 56 --FPEGT-A-------RLPGF----HVCVGSGG-ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQIL 118 (461)
Q Consensus 56 --~~~~~-~-------~~~~~----~~~~~~~~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 118 (461)
..... . ..+.. ...++... ...+.+.+++.|+++..+++++.+..+.. .+.+.+++++.+++|
T Consensus 78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v 157 (487)
T PRK07190 78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV 157 (487)
T ss_pred EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence 00000 0 00000 00000000 00122344567999999999999976554 345567778999999
Q ss_pred EEccCCCcc
Q 012545 119 VIATGSTVS 127 (461)
Q Consensus 119 iiAtG~~~~ 127 (461)
|.|.|++..
T Consensus 158 VgADG~~S~ 166 (487)
T PRK07190 158 IGADGSRSF 166 (487)
T ss_pred EECCCCCHH
Confidence 999998874
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-08 Score=93.91 Aligned_cols=119 Identities=24% Similarity=0.416 Sum_probs=70.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--cccc----c----------------ccCCCC-CCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALSK----A----------------YLFPEG-TAR 62 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~~~~----~----------------~~~~~~-~~~ 62 (461)
+||+|||||++|+++|..|++.|.+ |+|+|+.+......+ .+.. . +..... ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 6999999999999999999999987 999999975322100 0000 0 000000 000
Q ss_pred CC---CceeecC-CCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEcC-CCcEEecCEEEEccCCCcc
Q 012545 63 LP---GFHVCVG-SGGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSA-TGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 63 ~~---~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~-~~~~~~~d~liiAtG~~~~ 127 (461)
.+ .....+. ......+.+.+.+.|++++.++++..+..+... +.+. ++.++++|++|.|+|....
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH
Confidence 00 0000000 000112333445678999999999987655543 3333 3457999999999998763
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-07 Score=84.02 Aligned_cols=174 Identities=18% Similarity=0.155 Sum_probs=112.1
Q ss_pred HHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc---------------------------------
Q 012545 182 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------- 228 (461)
Q Consensus 182 ~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------------------------- 228 (461)
.+.|.......|+|||+|+.|+-+|..+++.|.+|.++++.+.+...
T Consensus 17 ~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~ 96 (257)
T PRK04176 17 FEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVED 96 (257)
T ss_pred HHHHHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecC
Confidence 33444444568999999999999999999999999999987653211
Q ss_pred ----ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-----------CCcEEecCEEEEccCCCCChh
Q 012545 229 ----LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 229 ----~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.-..++...+.+..++.|++++.++++.++..++++++.++... +..++.|+.||.|+|......
T Consensus 97 g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 97 GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 00124455667777889999999999999986444466666543 224799999999999655432
Q ss_pred -hhhc-----cccc-CCCcE--------EeCCCCCCCCCCEEEeCcccccCccccCcceee-ccHHHHHHHHHHHHHHHh
Q 012545 294 -LFKG-----QVAE-NKGGI--------ETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 294 -~~~~-----~~~~-~~g~i--------~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~ 357 (461)
.+.. .... ..... .|+.+-+ -.|++|++|=++..-... +|+ +....=..+|+.||+.++
T Consensus 177 ~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~----~rmg~~fg~m~~sg~~~a~~~~ 251 (257)
T PRK04176 177 SVLARKGPELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGL----PRMGPIFGGMLLSGKKVAELIL 251 (257)
T ss_pred HHHHHHcCCcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCC----CccCchhHhHHHhHHHHHHHHH
Confidence 2211 1111 11111 2222222 289999999888643211 111 223333458999999888
Q ss_pred ccc
Q 012545 358 ATE 360 (461)
Q Consensus 358 ~~~ 360 (461)
..+
T Consensus 252 ~~~ 254 (257)
T PRK04176 252 EKL 254 (257)
T ss_pred HHh
Confidence 654
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.7e-08 Score=101.62 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=66.9
Q ss_pred CCcEEEECCCHHH-HHHHHHHHHCCCcEEEEccCCccCCc-------------ccCHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 190 NGKAVVVGGGYIG-LELSAALKINNIDVSMVYPEPWCMPR-------------LFTADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 190 ~~~v~VvG~G~~g-~e~a~~l~~~g~~Vtli~~~~~~~~~-------------~~~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
..++.++|+++++ .+++..+...+..+.+..+..+++.. ..+..+.+.+.+.+++.|++++.++++
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 4566678877665 66776666555544433222211110 124567788889999999999999999
Q ss_pred EEEEecCCCCEEEEEeC--CCc-EEec-CEEEEccCCCCC
Q 012545 256 VGFTTNADGEVKEVKLK--DGR-TLEA-DIVVVGVGGRPL 291 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~--~G~-~i~a-D~vi~a~G~~p~ 291 (461)
+++.. +++++.+|... ++. ++.+ +.||+|+|.-.+
T Consensus 241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 99886 36777666553 343 5788 999999995543
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.9e-07 Score=88.63 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
..+...+.+.+++.|++++.+++|+++...+++.+..|++.+| ++.++.||+|+|..
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 4455667788899999999999999997644566667888888 69999998887754
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-07 Score=90.73 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|++++.+ ++.+..+++.++ ++.+|.||+|+|...
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 3466777888889999999999999999863 444556777655 799999999999754
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6e-08 Score=90.50 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=69.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCC-----------CCCCC------Cce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-----------TARLP------GFH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-----------~~~~~------~~~ 67 (461)
.+||+||||||||++||.+|++.|++ |+|+|+....... ......+.... ...++ +..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg--~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGG--MWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCc--cccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 68999999999999999999999987 9999998653211 00011111000 00000 000
Q ss_pred eecCCCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC-EE---EcC-----------CCcEEecCEEEEccCCCc
Q 012545 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK-TL---LSA-----------TGLIFKYQILVIATGSTV 126 (461)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v---~~~-----------~~~~~~~d~liiAtG~~~ 126 (461)
..........+.+...+.|++++.++.+.++..++. .+ ... +..++.++.+|.|||...
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 000000011123344568999999999888764332 22 111 224689999999999766
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-07 Score=89.45 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=67.0
Q ss_pred HHHHCCCcEEEEc-cCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 208 ALKINNIDVSMVY-PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 208 ~l~~~g~~Vtli~-~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
.+...+....++. +.+++... ..+.+.+.+.+.+++.|++++++++|.+++. +++.+..|.+++|.++++|.||+|+
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD-~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~ 226 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTD-ILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAP 226 (486)
T ss_pred HHHHhCCCceeeeccccccCcc-chHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEcc
Confidence 3344455544443 33454443 5788899999999999999999999999997 4555678999999999999999999
Q ss_pred CCCCChhhh
Q 012545 287 GGRPLISLF 295 (461)
Q Consensus 287 G~~p~~~~~ 295 (461)
|+....++-
T Consensus 227 Grsg~dw~~ 235 (486)
T COG2509 227 GRSGRDWFE 235 (486)
T ss_pred CcchHHHHH
Confidence 998877643
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-07 Score=93.01 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEEEEccC-CCCChhhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVG-GRPLISLFK 296 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~vi~a~G-~~p~~~~~~ 296 (461)
...+.+.+.+.+++.|++++.+++++++.. +++++..+... ++ ..+.++.||+|+| +..|.+++.
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 356777888888999999999999999987 46777777663 33 3689999999998 445544443
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.3e-08 Score=98.70 Aligned_cols=121 Identities=22% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-cc-------------ccc------------ccC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-AL-------------SKA------------YLF 56 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~-------------~~~------------~~~ 56 (461)
+.+||+||||||+|+++|..|++.|++ |+|+|+.+... ..+. .+ ... ++.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 468999999999999999999999998 99999986421 0000 00 000 000
Q ss_pred CCC-CCC--CC-------C--ce--eecCCC-CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEc---CCCcEEecC
Q 012545 57 PEG-TAR--LP-------G--FH--VCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT--LLS---ATGLIFKYQ 116 (461)
Q Consensus 57 ~~~-~~~--~~-------~--~~--~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d 116 (461)
... ... +. . +. ..+... ....+.+.+.+.++++..++++++++.+... +.+ .+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR 158 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence 000 000 00 0 00 000000 0001223344568999999999998765543 333 456689999
Q ss_pred EEEEccCCCcc
Q 012545 117 ILVIATGSTVS 127 (461)
Q Consensus 117 ~liiAtG~~~~ 127 (461)
+||.|+|.+..
T Consensus 159 ~vVgADG~~S~ 169 (502)
T PRK06184 159 YLVGADGGRSF 169 (502)
T ss_pred EEEECCCCchH
Confidence 99999998873
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.3e-08 Score=95.79 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=36.1
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
||++.+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 777889999999999999999999999987 999999864
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=97.67 Aligned_cols=123 Identities=25% Similarity=0.368 Sum_probs=76.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--CCC-cccc-------------cccCCCCCCCCCCce
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERP-ALSK-------------AYLFPEGTARLPGFH 67 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~-~~~~-------------~~~~~~~~~~~~~~~ 67 (461)
..+||+||||||+|+++|..|++.|++ |+|+|+.+...+ .|. .++. .+...........+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence 368999999999999999999999988 999999864221 111 1100 000000000000000
Q ss_pred ee-c-----CCC--C---------CCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 68 VC-V-----GSG--G---------ERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 68 ~~-~-----~~~--~---------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.. . ... . ...+.+.+++.+++++.+++++++..+... +.+.+++++.+|+||.|.|.++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 00 0 000 0 001223345679999999999999766543 455667789999999999998854
Q ss_pred c
Q 012545 129 T 129 (461)
Q Consensus 129 ~ 129 (461)
.
T Consensus 159 R 159 (488)
T PRK06834 159 R 159 (488)
T ss_pred H
Confidence 3
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.1e-08 Score=96.73 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=74.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-cc---cccccC------C---CCCCCCCCc
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-AL---SKAYLF------P---EGTARLPGF 66 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~~-~~---~~~~~~------~---~~~~~~~~~ 66 (461)
|++..+||+||||||+|+++|..|++.|++ |+|+|+.+..... +. .+ ....+. . ........+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM 77 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence 677889999999999999999999999997 9999998753210 00 00 000000 0 000000000
Q ss_pred e--------e--ecCC---CCC------CCCHhHH----H-HcCcEEEcCCeEEEEeCCC-C---EEEcCCCcEEecCEE
Q 012545 67 H--------V--CVGS---GGE------RLLPEWY----K-EKGIELILSTEIVRADIAS-K---TLLSATGLIFKYQIL 118 (461)
Q Consensus 67 ~--------~--~~~~---~~~------~~~~~~~----~-~~~v~~~~~~~v~~i~~~~-~---~v~~~~~~~~~~d~l 118 (461)
. . .... ... ..+.+.+ . ..+++++.+++++.+..+. . .+++.+|+++.+|.+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v 157 (388)
T PRK07045 78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL 157 (388)
T ss_pred EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence 0 0 0000 000 0011111 1 2478999999999987543 2 366778888999999
Q ss_pred EEccCCCcc
Q 012545 119 VIATGSTVS 127 (461)
Q Consensus 119 iiAtG~~~~ 127 (461)
|.|.|....
T Consensus 158 IgADG~~S~ 166 (388)
T PRK07045 158 VGADGARSM 166 (388)
T ss_pred EECCCCChH
Confidence 999998774
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-06 Score=79.00 Aligned_cols=167 Identities=18% Similarity=0.172 Sum_probs=108.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-------------------------------------cC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------------------------FT 231 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------------------------------------~~ 231 (461)
..-.|+|||+|+.|+-+|..+++.|.+|.++++.+.+.... ..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 45689999999999999999999999999999976532100 01
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCC-CEEEEEeC-----------CCcEEecCEEEEccCCCCCh-hhhhc-
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLK-----------DGRTLEADIVVVGVGGRPLI-SLFKG- 297 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~-----------~G~~i~aD~vi~a~G~~p~~-~~~~~- 297 (461)
.++.+.+.+...+.|++++.++.+.++..++++ ++.+|.+. +..++.++.||.|+|..... .++..
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 234556667778899999999999998874332 56677654 23478999999999966543 33321
Q ss_pred -cccc-C-----CCcEEeCCCC-----CC--CCCCEEEeCcccccCccccCcceee-ccHHHHHHHHHHHHHHHhcc
Q 012545 298 -QVAE-N-----KGGIETDDFF-----KT--SADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 298 -~~~~-~-----~g~i~vd~~~-----~t--~~~~vya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 359 (461)
.+.. . .+...++.-- .| -.|++|++|=.+..... . +|+ +....=..+|+.||+.++..
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~---~-~rmgp~fg~m~~sg~~~a~~~~~~ 252 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHG---L-PRMGPIFGGMLLSGKHVAEQILEK 252 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcC---C-CCcCchHHHHHHhhHHHHHHHHHH
Confidence 1111 0 1112222110 12 38999999988764321 1 111 22333345789999888754
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-07 Score=97.67 Aligned_cols=39 Identities=38% Similarity=0.539 Sum_probs=35.3
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|+..++||||||||.|||.||.++++.|.+ |+|+||...
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~~~ 40 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKAPP 40 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcccc
Confidence 556689999999999999999999999977 999999764
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=87.31 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=69.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCC-----------CCCCCC------ce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-----------TARLPG------FH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~ 67 (461)
.+||+||||||||++||..|++.|++ |+|+||+....... .....+++.. ...++. +.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 95 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV 95 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence 68999999999999999999999987 99999997532110 0000001000 000110 00
Q ss_pred eecCCCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC--E---EEcC-----------CCcEEecCEEEEccCCCc
Q 012545 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--T---LLSA-----------TGLIFKYQILVIATGSTV 126 (461)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~~~~~~~d~liiAtG~~~ 126 (461)
..........+.+...+.|++++.++.+.++..++. . +.+. +...++++.+|.|||...
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 000000011222334567999999999988765433 2 2221 124689999999999654
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.2e-07 Score=88.32 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|+++..+ ++. ..|.++++ ++.+|.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCCC-EEEeCEEEEecCcch
Confidence 4566777888889999999999999999873 333 45777766 799999999999643
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.4e-08 Score=95.53 Aligned_cols=123 Identities=22% Similarity=0.318 Sum_probs=73.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-------ccc---c------ccc---CCCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-------ALS---K------AYL---FPEGTA 61 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-------~~~---~------~~~---~~~~~~ 61 (461)
|| .+||+||||||+|+++|..|++.|++ |+|+|+.+......+ .++ . +++ ......
T Consensus 1 ~~--~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~ 75 (392)
T PRK09126 1 MM--HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS 75 (392)
T ss_pred CC--cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence 55 68999999999999999999999997 999999864210000 000 0 000 000000
Q ss_pred CCCCce---------eecCC-----CCC------CCCH----hH-HHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEe
Q 012545 62 RLPGFH---------VCVGS-----GGE------RLLP----EW-YKEKGIELILSTEIVRADIASK--TLLSATGLIFK 114 (461)
Q Consensus 62 ~~~~~~---------~~~~~-----~~~------~~~~----~~-~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (461)
...... ..+.. ... ..+. +. .+..|++++.++++.+++.+.. .|.+.+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (392)
T PRK09126 76 PLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT 155 (392)
T ss_pred ccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence 000000 00000 000 0011 11 1235899999999999876544 35667888899
Q ss_pred cCEEEEccCCCccc
Q 012545 115 YQILVIATGSTVSI 128 (461)
Q Consensus 115 ~d~liiAtG~~~~~ 128 (461)
+|.+|.|.|....+
T Consensus 156 a~~vI~AdG~~S~v 169 (392)
T PRK09126 156 ARLLVAADSRFSAT 169 (392)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987744
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.5e-07 Score=90.35 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHh----cC--cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 232 ADIAAFYEGYYAN----KG--IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 232 ~~~~~~~~~~l~~----~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
..+.+.+.+.+++ .| ++++++++|+++... ++....|++++| ++.||.||+|+|...
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhH
Confidence 4567778888888 77 889999999999873 344567888888 799999999999654
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=93.66 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=74.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--------ccc---------ccccCCC-----
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--------ALS---------KAYLFPE----- 58 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--------~~~---------~~~~~~~----- 58 (461)
|-.+.+||+|||||++|+++|..|++.|++ |+|+|+.+...+... .++ -+++...
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS 77 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence 555679999999999999999999999987 999999853222100 000 0000000
Q ss_pred CC-CC-----CCCceeecCC-----CC------CC----CCHhHHHHc-CcEEEcCCeEEEEeCCCC--EEEcCCCcEEe
Q 012545 59 GT-AR-----LPGFHVCVGS-----GG------ER----LLPEWYKEK-GIELILSTEIVRADIASK--TLLSATGLIFK 114 (461)
Q Consensus 59 ~~-~~-----~~~~~~~~~~-----~~------~~----~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (461)
.. .. .......... .. .. .+.+.++.. +++++.++++..+..+.. .+.+.+++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 157 (391)
T PRK08020 78 HPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQ 157 (391)
T ss_pred cccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEE
Confidence 00 00 0000000000 00 00 011122334 899999999998875544 35566777899
Q ss_pred cCEEEEccCCCccc
Q 012545 115 YQILVIATGSTVSI 128 (461)
Q Consensus 115 ~d~liiAtG~~~~~ 128 (461)
+|.||.|.|....+
T Consensus 158 a~~vI~AdG~~S~v 171 (391)
T PRK08020 158 AKLVIGADGANSQV 171 (391)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987743
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=87.41 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-----cEEecCEEEEccCCCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGGRP 290 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-----~~i~aD~vi~a~G~~p 290 (461)
..+...+.+.+++.|++++.+++|++++.+ ++.+ .+.+.++ .++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 456677788889999999999999999863 3332 3433332 3799999999999654
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-07 Score=96.86 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
..+.+.+.+.+++.|+++++++.|++|.. +++++..|++.+|+++.+|.||++++...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 57788899999999999999999999987 35666789999998999999999988543
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=95.07 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=34.7
Q ss_pred CC-CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm-~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|| .+.+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 44 4579999999999999999999999987 999999853
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-06 Score=87.74 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHCCCc------EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec-CC--CCEEEEE
Q 012545 200 YIGLELSAALKINNID------VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-AD--GEVKEVK 270 (461)
Q Consensus 200 ~~g~e~a~~l~~~g~~------Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~--g~~~~v~ 270 (461)
.++.|+...+.+.=.+ ..-+.+... . -.+.+...+.+.|+++||+|+++++|+++..+ ++ +++.++.
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~y---n-qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~ 267 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKY---N-QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIH 267 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCC---C-chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEE
Confidence 4788888888765111 111111111 1 24778899999999999999999999999874 22 5677777
Q ss_pred eC-CCc-----EEecCEEEEccCCCC
Q 012545 271 LK-DGR-----TLEADIVVVGVGGRP 290 (461)
Q Consensus 271 ~~-~G~-----~i~aD~vi~a~G~~p 290 (461)
.. +|. ..+.|.||+++|.-.
T Consensus 268 ~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 268 LTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred EEeCCceeEEEecCCCEEEEeCCcCc
Confidence 75 332 356899999999543
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=96.09 Aligned_cols=97 Identities=20% Similarity=0.344 Sum_probs=73.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... .+ . ...+ .....+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-~~----------~-~~~~-----------~~~~~~~l~~ 210 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTIL-PR----------E-EPSV-----------AALAKQYMEE 210 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccC-CC----------C-CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999998876 99999986421 00 0 0000 1234566788
Q ss_pred cCcEEEcCCeEEEEeCCCCEE-EcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKTL-LSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v-~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.+++.++..+ ...+++++.+|.+++|+|.+|.
T Consensus 211 ~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 211 DGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred cCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 999999999999998765443 3345668999999999999995
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.5e-07 Score=90.46 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+..+...+.+.+++.|++++.++.|++++. ++. ..|++.+| ++.||.||+|+|..
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~~-~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQP-AVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CCc-eEEEeCCc-EEECCEEEEccccc
Confidence 556778888899999999999999999975 222 45777777 79999999999943
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=93.65 Aligned_cols=122 Identities=18% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CCCCcEEEEeCCCCCCCC---CC-ccc-------c--ccc--------------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAVAPYE---RP-ALS-------K--AYL-------------- 55 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g--~~~~~V~vie~~~~~~~~---~~-~~~-------~--~~~-------------- 55 (461)
++||+||||||+|+++|..|++.| ++ |+|+|+.+..... +. .++ + +++
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 77 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMV 77 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEE
Confidence 379999999999999999999986 65 9999998642111 10 000 0 000
Q ss_pred -CCCCC-C--CCCCceee--c--CCC---------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecC
Q 012545 56 -FPEGT-A--RLPGFHVC--V--GSG---------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (461)
Q Consensus 56 -~~~~~-~--~~~~~~~~--~--~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (461)
..... . ........ . +.. ....+.+.+.+.|++++.+++++.++.+... +.+.+++++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 157 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR 157 (403)
T ss_pred EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 00000 0 00000000 0 000 0011223344579999999999998766554 556678889999
Q ss_pred EEEEccCCCcccc
Q 012545 117 ILVIATGSTVSIT 129 (461)
Q Consensus 117 ~liiAtG~~~~~~ 129 (461)
.||.|+|....+.
T Consensus 158 ~vI~AdG~~S~vr 170 (403)
T PRK07333 158 LLVAADGARSKLR 170 (403)
T ss_pred EEEEcCCCChHHH
Confidence 9999999887443
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-07 Score=96.22 Aligned_cols=120 Identities=20% Similarity=0.319 Sum_probs=71.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-cc-------------cccccC----------CCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-AL-------------SKAYLF----------PEG 59 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~-------------~~~~~~----------~~~ 59 (461)
.+||+||||||+|+++|..|++.|++ |+|||+.+... ..+. .+ ...+.. ...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 48999999999999999999999997 99999986421 1110 00 000000 000
Q ss_pred C--CCCCCc------eeecCC-CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEE--EcC--CC-cEEecCEEEEccCCC
Q 012545 60 T--ARLPGF------HVCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSA--TG-LIFKYQILVIATGST 125 (461)
Q Consensus 60 ~--~~~~~~------~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~--~~-~~~~~d~liiAtG~~ 125 (461)
. ..+... ...+.. .....+.+.+++.+++++.+++++++..+...+ .+. ++ +++++|++|.|.|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 0 000000 000000 000112233455799999999999987655443 332 45 479999999999988
Q ss_pred cc
Q 012545 126 VS 127 (461)
Q Consensus 126 ~~ 127 (461)
..
T Consensus 159 S~ 160 (493)
T PRK08244 159 SI 160 (493)
T ss_pred hH
Confidence 74
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=96.14 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
-..+.+.+.+.++++|++|+++++|++|.. ++|+...+++.+|+.+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 457888999999999999999999999998 455566788888878999999998776
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-06 Score=85.27 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+...+.+.+.+.|++++.+++|+++..+ ++ ...|++++| ++.+|.||+|+|...
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEAD-GD-GVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CC-eEEEEeCCC-EEEeeEEEEecCcch
Confidence 4566667777788899999999999999873 33 346788887 799999999999753
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.5e-07 Score=88.64 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=59.7
Q ss_pred HHHHHHHHCCCcEEEEccCCccCCc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEE
Q 012545 204 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 282 (461)
Q Consensus 204 e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~v 282 (461)
++...+.+.|.+++.... .+..+. ....++.+.+.+.+++.|++++++++|+++..+ ++ ...+++ +++++.+|.|
T Consensus 77 d~~~~~~~~Gv~~~~~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 77 DLIDFFESLGLELKVEED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET-SGGEYEADKV 152 (400)
T ss_pred HHHHHHHHcCCeeEEecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE-CCcEEEcCEE
Confidence 445566677777766543 233322 135788889999999999999999999999763 23 345666 4568999999
Q ss_pred EEccCCCC
Q 012545 283 VVGVGGRP 290 (461)
Q Consensus 283 i~a~G~~p 290 (461)
|+|+|...
T Consensus 153 IlAtG~~s 160 (400)
T TIGR00275 153 ILATGGLS 160 (400)
T ss_pred EECCCCcc
Confidence 99999643
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=89.45 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--CCC--cEEecCEEEEccC-CCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDG--RTLEADIVVVGVG-GRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G--~~i~aD~vi~a~G-~~p~~~~~ 295 (461)
...+.+.+.+.+++.|++++++++++++.. +++++..+.. .++ .++.++.||+|+| +..|.+.+
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 456778888888999999999999999986 4566666655 343 3689999999998 66665544
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-07 Score=90.33 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=71.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-c--ccc---cccCCCCCC-----CCC--Cceee-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-A--LSK---AYLFPEGTA-----RLP--GFHVC- 69 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~--~~~---~~~~~~~~~-----~~~--~~~~~- 69 (461)
+.+||+|||||++|+++|..|++.|++ |+|+|+.+...-.+. . +.. ..+...... ..+ .....
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 81 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLD 81 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEe
Confidence 468999999999999999999999987 999999864211111 0 000 000000000 000 00000
Q ss_pred -cCC-----CC---C---CCCHhHHH-H-cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCc
Q 012545 70 -VGS-----GG---E---RLLPEWYK-E-KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 70 -~~~-----~~---~---~~~~~~~~-~-~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~ 126 (461)
.+. .. . ..+...+. . .+++++.+++++++..+... +.+.+|+++.+|.||.|-|...
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 82 RDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 000 00 0 00111111 1 24678999999999765544 5677888999999999999876
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=94.03 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=72.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--ccc-------c--cccCC--CCCCCCCCce
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALS-------K--AYLFP--EGTARLPGFH 67 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~~~-------~--~~~~~--~~~~~~~~~~ 67 (461)
|+ +.+||+|||||++|+++|..|++.|++ |+|+|+.+...-... .+. + ++... ........+.
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 76 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLT 76 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceE
Confidence 44 578999999999999999999999987 999999864211000 000 0 00000 0000000000
Q ss_pred ee--------------------cCCCC--------CCCCHhHHHHc-CcEEEcCCeEEEEeCCCCE--EEcCCCcEEecC
Q 012545 68 VC--------------------VGSGG--------ERLLPEWYKEK-GIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (461)
Q Consensus 68 ~~--------------------~~~~~--------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (461)
.. .+... ...+.+.+.+. +++++.++.+.+++.++.. +.+.+++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 156 (396)
T PRK08163 77 MMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGD 156 (396)
T ss_pred EEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecC
Confidence 00 00000 00011122233 4899999999998765543 556677789999
Q ss_pred EEEEccCCCc
Q 012545 117 ILVIATGSTV 126 (461)
Q Consensus 117 ~liiAtG~~~ 126 (461)
.+|.|.|...
T Consensus 157 ~vV~AdG~~S 166 (396)
T PRK08163 157 ALIGCDGVKS 166 (396)
T ss_pred EEEECCCcCh
Confidence 9999999876
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-07 Score=93.41 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=72.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC-CC-----CCCCC-ccc-------c--cccCCC---CCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VA-----PYERP-ALS-------K--AYLFPE---GTA 61 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~-~~-----~~~~~-~~~-------~--~~~~~~---~~~ 61 (461)
|| ..+||+|||||++|+++|..|++.|++ |+|+|+.. .. +..|. .++ + +++..- ...
T Consensus 1 ~m-~~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~ 76 (405)
T PRK08850 1 MM-QSVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAA 76 (405)
T ss_pred CC-CcCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCC
Confidence 55 479999999999999999999999987 99999962 11 00110 010 0 000000 000
Q ss_pred CCCCceeecC---------CC-C-C-------------CCCHhHHHH-cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEe
Q 012545 62 RLPGFHVCVG---------SG-G-E-------------RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFK 114 (461)
Q Consensus 62 ~~~~~~~~~~---------~~-~-~-------------~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (461)
.+..+..+.. .. . . ..+.+.+.+ .+++++.++++++++.++. .+.+.+|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 156 (405)
T PRK08850 77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT 156 (405)
T ss_pred cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence 0000000000 00 0 0 001111122 3799999999999865543 46677888899
Q ss_pred cCEEEEccCCCcc
Q 012545 115 YQILVIATGSTVS 127 (461)
Q Consensus 115 ~d~liiAtG~~~~ 127 (461)
+|.||.|.|....
T Consensus 157 a~lvIgADG~~S~ 169 (405)
T PRK08850 157 AKLVVGADGANSW 169 (405)
T ss_pred eCEEEEeCCCCCh
Confidence 9999999998764
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=93.11 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=72.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-cccc---------cccCCCC---CCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALSK---------AYLFPEG---TARLP 64 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-------~~-~~~~---------~~~~~~~---~~~~~ 64 (461)
.+||+||||||+|+++|..|++.|++ |+|+|+.+..... |. .+.. +++..-. ...+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~ 79 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH 79 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence 68999999999999999999999987 9999998642110 00 0000 0000000 00000
Q ss_pred Ccee---------ec-----CCCCC------CC----CHhHHHH-cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCE
Q 012545 65 GFHV---------CV-----GSGGE------RL----LPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQI 117 (461)
Q Consensus 65 ~~~~---------~~-----~~~~~------~~----~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~ 117 (461)
.+.. .+ +.... .. +.+.+.+ .+++++.++++..++.+.. .+.+.+|+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 159 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL 159 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence 0000 00 00000 00 1111223 3799999999999865543 35667888899999
Q ss_pred EEEccCCCccc
Q 012545 118 LVIATGSTVSI 128 (461)
Q Consensus 118 liiAtG~~~~~ 128 (461)
||-|.|....+
T Consensus 160 vVgADG~~S~v 170 (400)
T PRK08013 160 VVGADGANSWL 170 (400)
T ss_pred EEEeCCCCcHH
Confidence 99999987743
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-06 Score=84.37 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+...+.+.+.+. |++++.+++|++++. + .|.+++| ++.||.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh
Confidence 445667777777665 999999999999964 2 5777777 578999999999754
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.7e-07 Score=79.54 Aligned_cols=100 Identities=28% Similarity=0.385 Sum_probs=68.6
Q ss_pred EEECCCHHHHHHHHHHHHCCCc-EEEEccCCccCC--------------cc----------------------------c
Q 012545 194 VVVGGGYIGLELSAALKINNID-VSMVYPEPWCMP--------------RL----------------------------F 230 (461)
Q Consensus 194 ~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~--------------~~----------------------------~ 230 (461)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+.. .. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998744211 00 0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC--CCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~--~p~~~~~ 295 (461)
.+++.+++.+..++.+++++++++|+++..++++ ..|++++++++.||.||+|+|. .|+..-+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~ 145 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIPDI 145 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence 1244577888889999999999999999985445 7899999989999999999996 5554433
|
... |
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.5e-07 Score=91.02 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=72.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ......+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~~~~---------~~-----------~~~~~~~~l~~ 223 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRIL---PGED---------AE-----------VSKVVAKALKK 223 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCC---CCCC---------HH-----------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999986421 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEE--EcCCC--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.++..+ .+.++ +++.+|.+++|+|..|+.
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence 899999999999987655543 33455 479999999999999843
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=92.66 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=72.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--------CCC-CC-cc---cccc------cCC---CCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--------PYE-RP-AL---SKAY------LFP---EGTAR 62 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--------~~~-~~-~~---~~~~------~~~---~~~~~ 62 (461)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.. .+. +. .+ +..+ +.. .....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP 78 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence 58999999999999999999999987 9999998621 000 00 00 0000 000 00000
Q ss_pred CCCcee---------ecCC-----CC----------CCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecC
Q 012545 63 LPGFHV---------CVGS-----GG----------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQ 116 (461)
Q Consensus 63 ~~~~~~---------~~~~-----~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d 116 (461)
...+.. .+.. .. ...+.+.+++.+++++.++++.+++.+.. .+.+.+|+++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 000000 0000 00 00111223456899999999999875554 3566788889999
Q ss_pred EEEEccCCCccc
Q 012545 117 ILVIATGSTVSI 128 (461)
Q Consensus 117 ~liiAtG~~~~~ 128 (461)
.||.|.|....+
T Consensus 159 ~vVgAdG~~S~v 170 (405)
T PRK05714 159 LVVAADGANSAV 170 (405)
T ss_pred EEEEecCCCchh
Confidence 999999987743
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-06 Score=88.48 Aligned_cols=101 Identities=24% Similarity=0.254 Sum_probs=81.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC--Ccc-----------CCcccCHHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
...++|||+|+.|+.+|..+++.|.+|+++... ..+ .+.....++.+.+.+.+++.|++++.+++|.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999999653 111 0111356788889999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
++...+ ....+.+.+|+++.+|.||+|+|.+|..
T Consensus 291 ~I~~~~--~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAA--GLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecC--CeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998732 3356778888899999999999987754
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=90.36 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
+..+.+.+.+.+++.|++++++++|++|+.++++.+..+++.+|+++.+|.||+|+.
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 356778888889899999999999999997666767778888999999999999986
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.8e-07 Score=92.88 Aligned_cols=119 Identities=20% Similarity=0.342 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC-CCCCCCc--c---cccccCCCCCCCCC----------C-
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-APYERPA--L---SKAYLFPEGTARLP----------G- 65 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~-~~~~~~~--~---~~~~~~~~~~~~~~----------~- 65 (461)
+..|||||||||+||+.||..+++.|.+ |+|+|++.. .....|. . .++.+..+ ...+. .
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrE-idalGg~~g~~~d~~gi 77 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVRE-IDALGGEMGKAIDKTGI 77 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHH-HHhcCCHHHHHHhhccC
Confidence 4579999999999999999999999998 999999842 1111111 1 01110000 00000 0
Q ss_pred -ceeec---CC-------C-CC----CCCHhHHHH-cCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCCC
Q 012545 66 -FHVCV---GS-------G-GE----RLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGST 125 (461)
Q Consensus 66 -~~~~~---~~-------~-~~----~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~~ 125 (461)
+.... +. . .. ..+.+.+.+ .+++++.. .|..+..++.. |.+.+|..+.++.+|+|||..
T Consensus 78 q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 78 QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 00000 00 0 00 011122233 37888765 78877655543 567788889999999999964
Q ss_pred c
Q 012545 126 V 126 (461)
Q Consensus 126 ~ 126 (461)
.
T Consensus 157 L 157 (618)
T PRK05192 157 L 157 (618)
T ss_pred h
Confidence 3
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-07 Score=89.58 Aligned_cols=121 Identities=17% Similarity=0.319 Sum_probs=72.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-cccc---------cccCCC---CCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALSK---------AYLFPE---GTARLP 64 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-------~~-~~~~---------~~~~~~---~~~~~~ 64 (461)
.+||+|||||++|+++|..|++.|++ |+|+|+.+...+. ++ .++. +++..- ....+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 58999999999999999999999987 9999987522111 10 1100 000000 000000
Q ss_pred Cce--------eecCCCC---C-------C-CCH----hHHHH-cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEE
Q 012545 65 GFH--------VCVGSGG---E-------R-LLP----EWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQIL 118 (461)
Q Consensus 65 ~~~--------~~~~~~~---~-------~-~~~----~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 118 (461)
.+. ..+.... . . .+. +.+.. .+++++.++++.+++.+.. .+++.+|.++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 000 0000000 0 0 001 11112 4799999999999876544 567788889999999
Q ss_pred EEccCCCccc
Q 012545 119 VIATGSTVSI 128 (461)
Q Consensus 119 iiAtG~~~~~ 128 (461)
|.|.|..+.+
T Consensus 160 IgADG~~S~v 169 (384)
T PRK08849 160 IGADGANSQV 169 (384)
T ss_pred EEecCCCchh
Confidence 9999988744
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-07 Score=91.10 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=68.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-cccc-cc----cCCCCCCCCCCce-ee-------cCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSK-AY----LFPEGTARLPGFH-VC-------VGS 72 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~-~~-------~~~ 72 (461)
||+|||||+||+++|..|++.|++ |+|+|+++..+..+. +... .+ +.......+.... .. ...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 799999999999999999998887 999999865332211 0000 00 0000000111100 00 000
Q ss_pred C--------CCCCCHhHHHHcCcEEEcCCeEEEEeCC-CC--EEEcCCCcEEecCEEEEccCCCc
Q 012545 73 G--------GERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 73 ~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
. ....+.+.+.+.+++++.+ .+..+... .. .+.+.++++++++.||.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 0011223334568888654 78877655 22 35666777899999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-07 Score=92.07 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=33.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+|||||+||+++|..|++.|++ |+|+|+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 468999999999999999999999987 999999865
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=88.77 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc-----EEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-----~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.+++.|++++++++|++|...+++.+.++++.+|+ ++.+|.||+|+..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 355778888888899999999999999986556767778887765 7999999999874
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-06 Score=88.07 Aligned_cols=102 Identities=24% Similarity=0.242 Sum_probs=81.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC--CccC-----------CcccCHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
...+|+|||+|+.|+.+|..+++.|.+|++++.. ..+. +....+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 4578999999999999999999999999998632 1111 11135677888889999999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+++..+ +....+.+++|+++.+|.+|+|+|.+|..
T Consensus 291 ~~I~~~--~~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIETE--DGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEec--CCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 999863 22356778888899999999999988754
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-07 Score=91.13 Aligned_cols=120 Identities=20% Similarity=0.231 Sum_probs=72.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--CCCCC-cc---cccccCCCCC-CCCC--------Cce--
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--PYERP-AL---SKAYLFPEGT-ARLP--------GFH-- 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--~~~~~-~~---~~~~~~~~~~-~~~~--------~~~-- 67 (461)
.+||+||||||+|+++|..|++.|++ |+|+|+.+.. ...+. .+ +-..+..-.. .++. ...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~---V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLD---VTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 57999999999999999999999988 9999998211 00000 00 0000000000 0000 000
Q ss_pred ------eecCC---C------------CCCCCHhHHHHc-CcEEEcCCeEEEEeCCCC--EEEcC-CCcEEecCEEEEcc
Q 012545 68 ------VCVGS---G------------GERLLPEWYKEK-GIELILSTEIVRADIASK--TLLSA-TGLIFKYQILVIAT 122 (461)
Q Consensus 68 ------~~~~~---~------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~-~~~~~~~d~liiAt 122 (461)
..+.. . ....+.+...+. +++++.+++|+.++.+.. ++++. +|+++++|.||-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 00000 0 001122333334 499999999999987664 36666 88899999999999
Q ss_pred CCCcc
Q 012545 123 GSTVS 127 (461)
Q Consensus 123 G~~~~ 127 (461)
|....
T Consensus 159 G~~S~ 163 (387)
T COG0654 159 GANSA 163 (387)
T ss_pred CCchH
Confidence 97763
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.9e-06 Score=83.67 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+....+.+.+.+++.| ..+..++.+..+..+ . ....|.+.+|+ +.+|.||+|+|...
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 4577788888999999 455668888888763 2 56788999986 99999999999553
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.4e-07 Score=93.50 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=33.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+..+||+|||||++|+++|..|+++|++ |+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 3468999999999999999999999998 999999864
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.5e-06 Score=86.16 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEE-eCCCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK-LKDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~-~~~G~--~i~aD~vi~a~G~~ 289 (461)
...+.+.+.+.+++ .||+++.++.++++.. +++++.++. ..++. .+.|+.||+|+|--
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 45667777777764 5999999999999876 356666654 33454 58999999999953
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-06 Score=92.61 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++ |++++.+++|+++... ++. ..|.+.+|..+.+|.||+|+|...
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEECCCcEEECCEEEECCCCCc
Confidence 45777888888888 9999999999999863 333 347888887789999999999754
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-06 Score=80.78 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEe-cCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
.....+.++..+++.|+.++.+..++.+.. ++++..+.|.+.+|..+.++.+|+++|-.-
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 556778889999999999999999998873 345677899999999999999999999543
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.6e-07 Score=88.86 Aligned_cols=121 Identities=24% Similarity=0.338 Sum_probs=71.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-------ccc---ccccCCCCC------CC---CC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-------ALS---KAYLFPEGT------AR---LP 64 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-------~~~---~~~~~~~~~------~~---~~ 64 (461)
+.+||+|||||+||+++|..|++.|++ |+|+|+.+....... .++ ...+..... .. ..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~ 80 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLR---VALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVY 80 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcce
Confidence 368999999999999999999999987 999999865321000 000 000000000 00 00
Q ss_pred Cceee--------c-----CCC----------CCCCCHhHHHHcC-cEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEE
Q 012545 65 GFHVC--------V-----GSG----------GERLLPEWYKEKG-IELILSTEIVRADIASK--TLLSATGLIFKYQIL 118 (461)
Q Consensus 65 ~~~~~--------~-----~~~----------~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 118 (461)
.+... . ... ....+.+.+++.+ ++++ ++.+.++..++. .+.+.++.++.+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 159 (388)
T PRK07608 81 DMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLV 159 (388)
T ss_pred EEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEE
Confidence 00000 0 000 0001222344555 8888 778888865444 356667778999999
Q ss_pred EEccCCCccc
Q 012545 119 VIATGSTVSI 128 (461)
Q Consensus 119 iiAtG~~~~~ 128 (461)
|.|.|....+
T Consensus 160 I~adG~~S~v 169 (388)
T PRK07608 160 VGADGAHSWV 169 (388)
T ss_pred EEeCCCCchH
Confidence 9999987643
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-06 Score=87.22 Aligned_cols=65 Identities=25% Similarity=0.268 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-Cc--EEec-CEEEEccCC-CCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEA-DIVVVGVGG-RPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G~--~i~a-D~vi~a~G~-~p~~~~~ 295 (461)
...+.+.+.+.+++.|++++++++++++..++++++.+|...+ ++ .+.+ +.||+|+|- ..|.+++
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 4567788888899999999999999999875557787776643 32 5788 999999994 4444444
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.4e-07 Score=91.75 Aligned_cols=116 Identities=20% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-ccccccCCCC-----CCCCCCceeec--------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYLFPEG-----TARLPGFHVCV-------- 70 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~-------- 70 (461)
.+||+||||||||+++|..|++.|++ |+|+|+... +..+. .....+.... ...++......
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~ 182 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI 182 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence 58999999999999999999999987 999998632 21110 0000000000 00011000000
Q ss_pred CCCC--C------CCCHhHHHHcCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCCCc
Q 012545 71 GSGG--E------RLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 71 ~~~~--~------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~~~ 126 (461)
+... . ..+.+.+.+.|+++ .++.|+.+..+... +.+.++.++.++.||.|+|...
T Consensus 183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 183 GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0000 0 11122234568998 45588888754332 3456777899999999999766
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-06 Score=84.96 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=91.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc---------------------------------------
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------------------------------------- 229 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~--------------------------------------- 229 (461)
..++|+|||+|++|+-+|..|.+.|.+|+++++.+.+...+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 36899999999999999999999999999999865321100
Q ss_pred --------------------cCHHHHHHHHHHHHhcCcE--EEcCCcEEEEEecCCCCEEEEEeCCC--c--EEecCEEE
Q 012545 230 --------------------FTADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDG--R--TLEADIVV 283 (461)
Q Consensus 230 --------------------~~~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~G--~--~i~aD~vi 283 (461)
-..++.+++++..+..|+. ++++++|++++.. +....|++.++ . +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~--~~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV--DGKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec--CCeEEEEEEcCCCceEEEEcCEEE
Confidence 0135677788888889988 8899999999873 23345665432 2 46799999
Q ss_pred EccC--CCCChhhhhccccc-CCCcEEeCCCCCC----CCCCEEEeCcccc
Q 012545 284 VGVG--GRPLISLFKGQVAE-NKGGIETDDFFKT----SADDVYAVGDVAT 327 (461)
Q Consensus 284 ~a~G--~~p~~~~~~~~~~~-~~g~i~vd~~~~t----~~~~vya~GD~~~ 327 (461)
+|+| ..|+.+-++ ++.. .+..+... .+++ ..+.|-++|--.+
T Consensus 167 vAtG~~~~P~~P~ip-G~~~f~G~~iHs~-~yr~~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 167 VCNGHYTEPNVAHIP-GIKSWPGKQIHSH-NYRVPDPFKNEVVVVIGNFAS 215 (461)
T ss_pred EeccCCCCCcCCCCC-CcccCCceEEEec-ccCCccccCCCEEEEECCCcC
Confidence 9999 566654332 2221 22223332 2332 4567888885443
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=74.78 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.6
Q ss_pred EEEcCChHHHHHHHHHHHcC--CCCCcEEEEeCCCC
Q 012545 9 VILGGGVSAGYAAREFAKQG--VKPGELAIISKEAV 42 (461)
Q Consensus 9 vIIG~G~aGl~aA~~L~~~g--~~~~~V~vie~~~~ 42 (461)
+|||+|++|++++.+|.++. .+..+|+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999984 45668999999765
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8e-07 Score=89.91 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=32.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+||+||||||||++||..|++.|++ |+|+|+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 469999999999999999999999997 99999985
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-07 Score=92.40 Aligned_cols=122 Identities=13% Similarity=0.141 Sum_probs=71.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-ccc-------------ccc-----------cCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALS-------------KAY-----------LFP 57 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~~-------------~~~-----------~~~ 57 (461)
..+||+||||||+|+++|..|++.|++ |+|+|+.+... +.+. .+. ..+ +..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 85 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLD 85 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEc
Confidence 368999999999999999999999987 99999986421 1110 000 000 000
Q ss_pred CCCCCCCCcee----ecCCCC---CC--CCH----hHHHH-cCcEEEcCCeEEEEeCCCCEE--EcC--CC--cEEecCE
Q 012545 58 EGTARLPGFHV----CVGSGG---ER--LLP----EWYKE-KGIELILSTEIVRADIASKTL--LSA--TG--LIFKYQI 117 (461)
Q Consensus 58 ~~~~~~~~~~~----~~~~~~---~~--~~~----~~~~~-~~v~~~~~~~v~~i~~~~~~v--~~~--~~--~~~~~d~ 117 (461)
.....+..+.. ..+... .. .+. +.+.+ .+++++.++++++++.+...+ .+. +| +++++|+
T Consensus 86 ~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~ 165 (538)
T PRK06183 86 AKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARY 165 (538)
T ss_pred CCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEE
Confidence 00000000000 000000 00 011 22223 389999999999998665543 333 45 4789999
Q ss_pred EEEccCCCccc
Q 012545 118 LVIATGSTVSI 128 (461)
Q Consensus 118 liiAtG~~~~~ 128 (461)
||.|.|.+..+
T Consensus 166 vVgADG~~S~v 176 (538)
T PRK06183 166 VVGCDGANSFV 176 (538)
T ss_pred EEecCCCchhH
Confidence 99999987743
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.7e-07 Score=78.73 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=32.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..||+|+||||+||+||++|++.|++ |+++|++-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls 64 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLS 64 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCce---EEEEEeecc
Confidence 36999999999999999999999998 999999855
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.4e-07 Score=93.01 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+||||||+|+++|..|++.|++ |+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 468999999999999999999999987 999999864
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.5e-07 Score=86.85 Aligned_cols=117 Identities=18% Similarity=0.266 Sum_probs=67.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCc---ccc---------cccCCCCC-C-----CCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPA---LSK---------AYLFPEGT-A-----RLP 64 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~---~~~---------~~~~~~~~-~-----~~~ 64 (461)
+||+||||||||+++|..|++. ++ |+|+|+.+.. ++..++ ++. ++..+... . ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~ 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee
Confidence 6999999999999999999997 76 9999998642 222211 100 00000000 0 000
Q ss_pred Cceee------cCCCC----CCCCHhHH---HHcCcEEEcCCeEEEEeCCCCE--EEc-CCCc--EEecCEEEEccCCCc
Q 012545 65 GFHVC------VGSGG----ERLLPEWY---KEKGIELILSTEIVRADIASKT--LLS-ATGL--IFKYQILVIATGSTV 126 (461)
Q Consensus 65 ~~~~~------~~~~~----~~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~-~~~~--~~~~d~liiAtG~~~ 126 (461)
..... .+... ...+.+++ .+.+++++.++.+..+...... +.+ .+++ ++++|.+|.|+|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 78 TIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred EecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 00000 00000 00111222 2468999999999888755443 343 4553 689999999999876
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-06 Score=88.94 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCC---CCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD---GEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~---g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
...+.+.+.+.+++.||+++.++.++++..+++ +++.++.. .+|+ .+.++.||+|||...
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 456777888888899999999999999986432 77777754 4554 578999999999644
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-07 Score=90.00 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=34.1
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
.+++++.+++++++...+. .+.+.++.++.+|.+|.|.|...
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 4799999999999875544 35666777899999999999876
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.3e-07 Score=89.08 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=70.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--cc-cc--------cccCC--CCCCCCCCceee---
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL-SK--------AYLFP--EGTARLPGFHVC--- 69 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~~-~~--------~~~~~--~~~~~~~~~~~~--- 69 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+...-... .+ .. +++.. .....+..+...
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 4899999999999999999999987 999999864210000 00 00 00000 000000000000
Q ss_pred ---------------cCCCCCC----CCHhHH---HHcCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCC
Q 012545 70 ---------------VGSGGER----LLPEWY---KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGST 125 (461)
Q Consensus 70 ---------------~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~ 125 (461)
.+..... .+...+ ...+++++.+++|.+++.+... +.+.+|+++.+|.||.|.|.+
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0000000 011111 1346899999999999876654 566788889999999999987
Q ss_pred cc
Q 012545 126 VS 127 (461)
Q Consensus 126 ~~ 127 (461)
..
T Consensus 158 S~ 159 (391)
T PRK07588 158 SH 159 (391)
T ss_pred cc
Confidence 74
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=85.98 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=69.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--cc---------ccccCC--CCCCCCCCceeec--
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS---------KAYLFP--EGTARLPGFHVCV-- 70 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~~~~~--~~~~~~~~~~~~~-- 70 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+........ +. -+++.. ........+....
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~ 77 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK 77 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC
Confidence 3899999999999999999999987 9999998752111000 00 000000 0000000000000
Q ss_pred C-------CC----CC----CCCHhHHHH--cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCc
Q 012545 71 G-------SG----GE----RLLPEWYKE--KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 71 ~-------~~----~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~ 126 (461)
+ .. .. ..+...+.+ .+.+++.++++++++.++.. +++.+++++.+|.||-|.|.+.
T Consensus 78 g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 78 GTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred CCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 0 00 00 011222222 24578889999999765543 5667888899999999999776
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=86.70 Aligned_cols=99 Identities=14% Similarity=0.283 Sum_probs=74.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccCCccCC--cccCHHHH---------HHHHHHHHhcCcEEEcCCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP--RLFTADIA---------AFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~--~~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~ 256 (461)
.++++|||+|+.|+.+|..|++.+. +|+++++.+...- ..+...+. -.-.+.+++.||+++.++.|+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5689999999999999999999875 7999987754311 01222111 011345677899999999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
.+.. +. ..+.+++|+++.+|.+|+|||.+|..
T Consensus 83 ~id~--~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGR--DT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEC--CC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 9976 33 25777889899999999999998854
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=89.01 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.+++.|++++++++|++|+.+ ++.+..+ ..+++++.+|.||+|++.
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~-~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGV-EVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEE-EeCCceEECCEEEECCCH
Confidence 4567888888999999999999999999873 3444333 356778999999999984
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.6e-06 Score=82.94 Aligned_cols=59 Identities=27% Similarity=0.487 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
...+.+.+.+.+++.| ++++++++|++++.++++.+ .+.+ .+|+ ++.|+.||+|.|...
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 3466778888888887 89999999999987445533 3333 3453 699999999999764
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=86.64 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=70.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc--c---------ccccCC--CCCCCCCCcee----
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--S---------KAYLFP--EGTARLPGFHV---- 68 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~--~---------~~~~~~--~~~~~~~~~~~---- 68 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+...-....+ . -+++.. ...........
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 4899999999999999999999987 99999986521100000 0 000000 00000000000
Q ss_pred ------e-----cCCCC----C----CCCHhHHH---HcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCC
Q 012545 69 ------C-----VGSGG----E----RLLPEWYK---EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS 124 (461)
Q Consensus 69 ------~-----~~~~~----~----~~~~~~~~---~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~ 124 (461)
. .+... . ..+.+.+. ..+++++++++++.++.+.. ++.+.+++++.+|.||-|.|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 0 00000 0 01112222 35789999999999875544 356778888999999999998
Q ss_pred Ccc
Q 012545 125 TVS 127 (461)
Q Consensus 125 ~~~ 127 (461)
+..
T Consensus 159 ~S~ 161 (372)
T PRK05868 159 HSN 161 (372)
T ss_pred Cch
Confidence 774
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-06 Score=84.33 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CCc--EEecCEEEEccC-CCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVG-GRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G~--~i~aD~vi~a~G-~~p~~~~~ 295 (461)
...+.+.+.+.+++.|++++++++++++..++++++.++... +++ .+.++.||+|+| +..|.+++
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHH
Confidence 467788888999999999999999999987556777666553 443 478999999999 55555544
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=85.74 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=32.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
++++|||||++||+||++|++.+ ++.+|+|+|+++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~-p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAG-PDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC-CCCcEEEEecCCCC
Confidence 37999999999999999999998 35669999998663
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.9e-06 Score=87.00 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~ 288 (461)
...+...+.+.+++.||+++.++.++++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 56777788888888999999999999987645778877764 3564 5789999999984
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.4e-07 Score=67.27 Aligned_cols=78 Identities=19% Similarity=0.417 Sum_probs=57.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
+++|||||+.|+.+|..|++.|.+ |+|+++.+... +... .. ......+.+++.|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~---~~~~---------~~-----------~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL---PGFD---------PD-----------AAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS---TTSS---------HH-----------HHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh---hhcC---------HH-----------HHHHHHHHHHHCC
Confidence 589999999999999999998876 99999997522 0000 00 0124567788899
Q ss_pred cEEEcCCeEEEEeCCCCE--EEcCCC
Q 012545 87 IELILSTEIVRADIASKT--LLSATG 110 (461)
Q Consensus 87 v~~~~~~~v~~i~~~~~~--v~~~~~ 110 (461)
|++++++.+.+++.++.. |.+.||
T Consensus 55 V~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 55 VEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 999999999999876543 555443
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.6e-06 Score=86.95 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
...+...+.+.+++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 55677788888888999999999999998744577888764 3564 67899999999953
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-06 Score=87.87 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
|||+||||||||++||..|++.|++ |+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 7999999999999999999999987 9999998
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.6e-06 Score=85.99 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-----cEEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-----~~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.++++|++++++++|++|..+ ++++..+.+.++ +++.+|.||+++..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 5668889999999999999999999999873 455556666554 57899999999874
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.7e-06 Score=82.15 Aligned_cols=102 Identities=26% Similarity=0.342 Sum_probs=80.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC------------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------ 227 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------ 227 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56899999999999999999999999999987653100
Q ss_pred ---c----------------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 228 ---R----------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 228 ---~----------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
. ....++.+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCC
Confidence 0 001244566777778889999999999999873332 5678889999999999999998
Q ss_pred CCChh
Q 012545 289 RPLIS 293 (461)
Q Consensus 289 ~p~~~ 293 (461)
.+...
T Consensus 162 ~s~~r 166 (375)
T PRK06847 162 YSKVR 166 (375)
T ss_pred Ccchh
Confidence 77653
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=87.34 Aligned_cols=117 Identities=26% Similarity=0.310 Sum_probs=70.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------CC-ccc---------ccccCCC---CCCCCCCce
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------RP-ALS---------KAYLFPE---GTARLPGFH 67 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~------~~-~~~---------~~~~~~~---~~~~~~~~~ 67 (461)
||+|||||+||+++|..|++.|++ |+|+|+.+..... +. .++ -+++... .......+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 799999999999999999999987 9999999742111 10 000 0000000 000000000
Q ss_pred eecC---------C-----CC----------CCCCHhHHHHcC-cEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEE
Q 012545 68 VCVG---------S-----GG----------ERLLPEWYKEKG-IELILSTEIVRADIASKT--LLSATGLIFKYQILVI 120 (461)
Q Consensus 68 ~~~~---------~-----~~----------~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lii 120 (461)
.... . .. ...+.+.+.+.+ ++++.+++|+.++..... +.+.+++++.+|.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 0000 0 00 001122233455 999999999999766554 4567888899999999
Q ss_pred ccCCCc
Q 012545 121 ATGSTV 126 (461)
Q Consensus 121 AtG~~~ 126 (461)
|.|...
T Consensus 158 adG~~S 163 (385)
T TIGR01988 158 ADGANS 163 (385)
T ss_pred eCCCCC
Confidence 999876
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-06 Score=87.75 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=69.8
Q ss_pred eEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCCCCCCC-----CC-cccc---------cccCCC--CCCCCCCcee
Q 012545 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVAPYE-----RP-ALSK---------AYLFPE--GTARLPGFHV 68 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~~~~~~-----~~-~~~~---------~~~~~~--~~~~~~~~~~ 68 (461)
||+||||||+|+++|..|++.| ++ |+|+|+.+..... +. .+.. +++..- .......+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999999 87 9999998643211 00 0000 000000 0000000000
Q ss_pred e---------cC-----CCC------CCCCH----hHHHH-cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEc
Q 012545 69 C---------VG-----SGG------ERLLP----EWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIA 121 (461)
Q Consensus 69 ~---------~~-----~~~------~~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiA 121 (461)
. .. ... ...+. +.+.+ .|++++.+++++++..+.. ++.+.+++++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 00 000 00011 22233 4899999999999875544 356677778999999999
Q ss_pred cCCCc
Q 012545 122 TGSTV 126 (461)
Q Consensus 122 tG~~~ 126 (461)
.|...
T Consensus 158 dG~~S 162 (382)
T TIGR01984 158 DGANS 162 (382)
T ss_pred cCCCh
Confidence 99776
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-06 Score=84.30 Aligned_cols=112 Identities=16% Similarity=0.221 Sum_probs=66.0
Q ss_pred eEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCcccccccCCC------------CCCCCCCceeecCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPE------------GTARLPGFHVCVGS 72 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 72 (461)
||+|||||+||+++|..|++. |++ |+|+|+.+...-.++ ..++... ...+++.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~t---w~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHT---WSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCccc---ceecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence 799999999999999999987 666 999999864221111 0111100 00111111111100
Q ss_pred C------C-----CCCCHhH-HHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCc
Q 012545 73 G------G-----ERLLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 73 ~------~-----~~~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
. . ...+.+. ++..+..++.++.|..++.+ .|.+.+|+++.+|.||-|.|..+
T Consensus 75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 0 0 0011121 22223346667788888543 46668888999999999999765
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-07 Score=92.24 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=29.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-----cccccc--------cCC---CCCCCCCC-----
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-----ALSKAY--------LFP---EGTARLPG----- 65 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-----~~~~~~--------~~~---~~~~~~~~----- 65 (461)
||||||||+||++||..+++.|.+ |+|||+.+....... ...... +.. ........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 899999999999999999999997 999999986321100 000000 000 00000000
Q ss_pred -ce----eecCC-CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE---EEcCC---CcEEecCEEEEccCC
Q 012545 66 -FH----VCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKT---LLSAT---GLIFKYQILVIATGS 124 (461)
Q Consensus 66 -~~----~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---~~~~~~d~liiAtG~ 124 (461)
.. ..+.. .....+.+++.+.|+++++++.+.++..++.. |.+.+ ..++.++.+|-|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 00111 11223556667889999999999998877643 44433 457899999999994
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-06 Score=87.97 Aligned_cols=124 Identities=21% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCC-CCCcEEEEeCCCCCC-C--CCC-cc-------ccccc-CCCCCCCCCCce
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAP-Y--ERP-AL-------SKAYL-FPEGTARLPGFH 67 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~-~--~~~-~~-------~~~~~-~~~~~~~~~~~~ 67 (461)
|..+.+||+||||||+|+++|..|++.|. +..+|+|+|+.+... . .|. .+ .+.+- +......+....
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 44567899999999999999999999873 213499999975311 1 010 00 00000 000000000000
Q ss_pred ee---------c-----CC----------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEcCCC---cEEecCEE
Q 012545 68 VC---------V-----GS----------GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATG---LIFKYQIL 118 (461)
Q Consensus 68 ~~---------~-----~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~l 118 (461)
.. + .. .....+.+.+.+.++++..++++..++..... +.+.++ +++++|.|
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lv 166 (398)
T PRK06996 87 VSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIA 166 (398)
T ss_pred EecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEE
Confidence 00 0 00 00111233345578999999999888655544 444433 57999999
Q ss_pred EEccCC
Q 012545 119 VIATGS 124 (461)
Q Consensus 119 iiAtG~ 124 (461)
|-|.|.
T Consensus 167 IgADG~ 172 (398)
T PRK06996 167 VQAEGG 172 (398)
T ss_pred EECCCC
Confidence 999995
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.2e-07 Score=88.50 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID---VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc---cccchhccc
Confidence 6999999999999999999999998 999999876
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=90.82 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||||||||.||++||.++++.|. ..+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 46899999999999999999998752 223999999864
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=85.54 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=62.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC-CCCCCCCC--cc---cccccCCC------------CCCCC-----
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-AVAPYERP--AL---SKAYLFPE------------GTARL----- 63 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~-~~~~~~~~--~~---~~~~~~~~------------~~~~~----- 63 (461)
||+|||||+||..||+.+++.|.+ |+|+... +....-.| .+ .++.+..+ ....+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 899999999999999999999998 9999433 22111111 10 01111000 00000
Q ss_pred -----CCceeecCCCCCCC----CHhHHHH-cCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCC
Q 012545 64 -----PGFHVCVGSGGERL----LPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS 124 (461)
Q Consensus 64 -----~~~~~~~~~~~~~~----~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~ 124 (461)
|........-+... ..+.++. .+++++.. +|.++..++.. |.+.+|+.+.+|.+|+|||.
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00000000000011 1222233 68999875 89999877654 67789999999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-06 Score=85.87 Aligned_cols=101 Identities=22% Similarity=0.375 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCcc------CCcc----cC--HHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWC------MPRL----FT--ADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~------~~~~----~~--~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ ++.. .+ .++.....+.+++.||+++.+++|+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 489999988753 1111 11 1223334567888999999999999
Q ss_pred EEEecCCCCEEEEEe-CCCcEEe--cCEEEEccCCCCChh
Q 012545 257 GFTTNADGEVKEVKL-KDGRTLE--ADIVVVGVGGRPLIS 293 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~-~~G~~i~--aD~vi~a~G~~p~~~ 293 (461)
+++. +++...+.. .+|+++. +|.+|+|+|.+|+..
T Consensus 81 ~id~--~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDA--KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEEC--CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 9986 333333432 2356666 999999999998754
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.6e-06 Score=82.95 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~ 291 (461)
...+.+.+.+.+++.|++++++++++++.. +++++.++... +|+ ++.++.||+|+|-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 567788899999999999999999999998 47788888876 454 5789999999996654
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-05 Score=75.94 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---------------CcEEecCEEEEccCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---------------GRTLEADIVVVGVGG 288 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---------------G~~i~aD~vi~a~G~ 288 (461)
..+.+++-+..++.||+++.+..+.++.-+++|.+.++.++| |-++.+..-|+|-|-
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 345667777778888888888888888877788888887754 235777778887774
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=86.98 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=74.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+|+|||+|++|+.+|..|++.|.+ |+++++.+... . +. +. .. ......+.+++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~-~-~~-----~~----~~-----------~~~~~~~~l~~ 191 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERIL-N-KL-----FD----EE-----------MNQIVEEELKK 191 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccC-c-cc-----cC----HH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 99999885320 0 00 00 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.+++.+...+.+.+++++++|.+++|+|.+|.
T Consensus 192 ~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 192 HEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred cCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 8999999999999987665445667888999999999999984
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=82.20 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=33.2
Q ss_pred cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 247 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 247 V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+++++++|++|+.++++ ..|++++|+++.+|.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSN--YTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCc--EEEEECCCcEEEcCEEEECCCH
Confidence 689999999999874433 4577888888999999999884
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-06 Score=86.33 Aligned_cols=39 Identities=23% Similarity=0.555 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
||+..+||+|||||+.|+++|++|+++|++ |+|+|+++.
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~---V~LlEk~d~ 40 (502)
T PRK13369 2 AEPETYDLFVIGGGINGAGIARDAAGRGLK---VLLCEKDDL 40 (502)
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCc---EEEEECCCC
Confidence 455679999999999999999999999987 999999864
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=80.04 Aligned_cols=54 Identities=30% Similarity=0.410 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCc-EEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 233 DIAAFYEGYYANKGI-KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV-~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+...+.+.++..+. +++++++|++|+..+++ ..|.+.+|+++.+|.||+|+..
T Consensus 219 G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 219 GLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred HHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCH
Confidence 333444444444333 79999999999874333 4677889999999999999873
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-06 Score=85.38 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+||+||||||||++||..|++.|++ |+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 5899999999999999999999998 999999753
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.6e-06 Score=85.36 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=34.8
Q ss_pred CcEEEcCCeEEEEeCC---------CCEEEcCCCcEEecCEEEEccCCCccc
Q 012545 86 GIELILSTEIVRADIA---------SKTLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~---------~~~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
+++++.++++.+++.. .-++.+.+|+++++|.||.|.|....+
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChh
Confidence 4999999999998642 235677888899999999999988744
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.4e-06 Score=85.80 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
...+...+.+..++.||+++.++.++++..+++|++.++.. .+|+ .+.++.||+|||--
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 56677777777778899999999999998755788888765 3564 57899999999953
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.4e-07 Score=91.77 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
...+.+.+.+.++++|++++.+++|++|.. +++++..|++.+|+++++|.||+++|..
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 356788899999999999999999999987 4577789999999999999999998853
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-05 Score=82.53 Aligned_cols=59 Identities=29% Similarity=0.467 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE---eCCC--cEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDG--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G--~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|++++.++++.+ .+. +.+| .++.+|.||+|+|...
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 466788888888999999999999999987434332 233 2334 3689999999999754
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.7e-06 Score=82.79 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHH-hcCcEEEcCCcEEEEEecCCCCEEEEE---eCCCc--EEecCEEEEccCCCCC
Q 012545 232 ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 232 ~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~--~i~aD~vi~a~G~~p~ 291 (461)
..+.+.+.+.+. ..|++++++++|+++...+++.. .++ +.+|+ ++.+|.||+|.|....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 455667767775 45999999999999987424332 333 34453 6899999999997753
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-05 Score=84.77 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcC----cEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKG----IKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~G----V~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~ 289 (461)
...+...+.+.+++.+ |+++.++.++++..+++|++.+|... +++ .+.++.||+|||--
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 199 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGP 199 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCC
Confidence 4556666666665443 88999999999887556888888764 343 47899999999953
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=84.65 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
...+...+.+.+++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 55677777777778899999999999987644677877765 3564 57899999999953
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.3e-06 Score=85.59 Aligned_cols=59 Identities=34% Similarity=0.635 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
..+-+.+.+..++.||+++.+ +|+++..+++|.+..|++++|+++++|.+|=|+|++..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 356667788888999999987 57777776788888999999999999999999998653
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.3e-05 Score=72.34 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=44.9
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
........+++.-...+-++.+++.|..+..-++| +.+...+|++-.+|.||+|+=-..
T Consensus 215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~dq 273 (447)
T COG2907 215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPDQ 273 (447)
T ss_pred cccchHHHHHHHhccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChHH
Confidence 45555667777666666679999999999987788 356667899889999999876433
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-06 Score=88.01 Aligned_cols=36 Identities=22% Similarity=0.538 Sum_probs=33.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+|||||+.|+++|+.|+++|++ |+|||++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~---V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLR---CILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCC
Confidence 369999999999999999999999987 999999764
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-06 Score=83.48 Aligned_cols=98 Identities=15% Similarity=0.297 Sum_probs=74.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... . .. ++. .......+.+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l-~------~~--------~~~-------~~~~~l~~~l~~ 195 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLL-A------SL--------MPP-------EVSSRLQHRLTE 195 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCccc-c------hh--------CCH-------HHHHHHHHHHHh
Confidence 46899999999999999999998876 99999886421 0 00 000 001234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.+++.+.. .+.+.+++++.+|.+|+|+|..|.
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 9999999999999986554 366778888999999999999884
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.8e-06 Score=79.07 Aligned_cols=95 Identities=25% Similarity=0.300 Sum_probs=69.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEc-cCCccCCc------------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVY-PEPWCMPR------------------------------------------ 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~-~~~~~~~~------------------------------------------ 228 (461)
.|+|||+|..|+|+|..+++.|.+|.++. ..+.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 38999999999999999999999999993 33222110
Q ss_pred ----------ccCH-HHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 229 ----------LFTA-DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 229 ----------~~~~-~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
..|. ...+.+.+.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0111 234556677766 678886 578999987 578999999999999999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-05 Score=79.22 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC--CC--CEEEEEeCCC---cEEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKLKDG---RTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~g--~~~~v~~~~G---~~i~aD~vi~a~G~~ 289 (461)
..-+.+.+.+.|+++|++++++++|++|+.++ ++ ++..+.+.+| +++.+|.||+|++..
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 44456778888999999999999999998633 23 2566667554 569999999999953
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-06 Score=87.62 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||||||+|.||++||..+++.|.+ |+|+||...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence 58999999999999999999999887 999999864
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-06 Score=84.41 Aligned_cols=33 Identities=36% Similarity=0.535 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence 6999999999999999999999987 99999863
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.9e-05 Score=68.23 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=107.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------cC-------------------------------
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT------------------------------- 231 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------~~------------------------------- 231 (461)
....|+|+|+|++|+-+|..|++.|.+|.+++++-.+.... |+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds 108 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS 108 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecH
Confidence 45689999999999999999999999999999886543221 11
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-----------CCcEEecCEEEEccCCCCChh-hh-hcc
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS-LF-KGQ 298 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~G~~i~aD~vi~a~G~~p~~~-~~-~~~ 298 (461)
.++...+....-+.|.+++....|..+...++.++.+|... |.-.++++.||-|||.....- ++ +..
T Consensus 109 ~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~ 188 (262)
T COG1635 109 AEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI 188 (262)
T ss_pred HHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence 13334444555567899999999998876444366666553 334789999999999877653 22 111
Q ss_pred ----ccc-CCCcEEeC--CCC---CC--CCCCEEEeCcccccCccccCcceee-ccHHHHHHHHHHHHHHHhccc
Q 012545 299 ----VAE-NKGGIETD--DFF---KT--SADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 299 ----~~~-~~g~i~vd--~~~---~t--~~~~vya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~~ 360 (461)
... ..+....+ +.+ .| -.|++|++|=.+.--... + |+ +...-=..+|+.||+.++..+
T Consensus 189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~---p-RMGPiFGgMllSGkkaAe~i~e~L 259 (262)
T COG1635 189 PELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGL---P-RMGPIFGGMLLSGKKAAEEILEKL 259 (262)
T ss_pred cccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCC---c-ccCchhhhhhhchHHHHHHHHHHh
Confidence 111 11222222 111 12 489999999877532211 1 11 222223467888888877654
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=85.11 Aligned_cols=34 Identities=18% Similarity=0.452 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.+||+|||+|.||++||.++++.|.+ |+|+||..
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~~ 68 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQD 68 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecCC
Confidence 57999999999999999999999887 99999854
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.9e-05 Score=71.36 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=104.2
Q ss_pred HHHHhcCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccCCccCCcc--------------------------cC----
Q 012545 183 EAIKAKKNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRL--------------------------FT---- 231 (461)
Q Consensus 183 ~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~~~--------------------------~~---- 231 (461)
+.+.....-.|+|||+|..|+-+|..|++. |.+|+++++...+.... ++
T Consensus 85 ~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dg 164 (357)
T PLN02661 85 TDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQEN 164 (357)
T ss_pred hhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCC
Confidence 333333456899999999999999999976 89999999875432100 00
Q ss_pred -------HHHHHHH-HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC------C--------CcEEecCEEEEccCCC
Q 012545 232 -------ADIAAFY-EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------D--------GRTLEADIVVVGVGGR 289 (461)
Q Consensus 232 -------~~~~~~~-~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------~--------G~~i~aD~vi~a~G~~ 289 (461)
..+.+.+ .+.+++.|++++.++.+.++.. +++++.++.+. + ...+.++.||+|||..
T Consensus 165 y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 165 YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 1111223 3344557899999999999887 45677777641 1 1268999999999966
Q ss_pred CChh-h-hh----ccccc---CCCcEEeCCC--C---CC--CCCCEEEeCcccccCccccCcceee-ccHHHHHHHHHHH
Q 012545 290 PLIS-L-FK----GQVAE---NKGGIETDDF--F---KT--SADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQA 352 (461)
Q Consensus 290 p~~~-~-~~----~~~~~---~~g~i~vd~~--~---~t--~~~~vya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~a 352 (461)
+... . +. .+... ......++.- + .| -+|++|++|=.+.--.. . .|+ +....=..+|+.|
T Consensus 244 g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g---~-~rmgp~fg~m~~sg~k~ 319 (357)
T PLN02661 244 GPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDG---S-PRMGPTFGAMMISGQKA 319 (357)
T ss_pred CcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcC---C-CccCchhHhHHhhhHHH
Confidence 5321 1 11 11100 0111222211 0 12 38999999987754221 1 111 2223334678999
Q ss_pred HHHHhccc
Q 012545 353 VKTIMATE 360 (461)
Q Consensus 353 a~~i~~~~ 360 (461)
|+.++..+
T Consensus 320 a~~~~~~l 327 (357)
T PLN02661 320 AHLALKAL 327 (357)
T ss_pred HHHHHHHH
Confidence 99988765
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.7e-06 Score=82.48 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=75.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+..|..+++.|.+ |+|+|+.+..- .. ....+ ...+...+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~iL-----------p~-~D~ei-----------~~~~~~~l~~ 226 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRIL-----------PG-EDPEI-----------SKELTKQLEK 226 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-----------Cc-CCHHH-----------HHHHHHHHHh
Confidence 56899999999999999999999987 99999997521 00 00000 1345566677
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCc--EEecCEEEEccCCCcccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGL--IFKYQILVIATGSTVSIT 129 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~--~~~~d~liiAtG~~~~~~ 129 (461)
.+++++.++.+..++.... .+.+.+++ .+.+|++++|+|.+|+.+
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 7899999999999876654 45666665 689999999999999643
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.1e-06 Score=84.76 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=72.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+.... . .... ......+.+++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll~-----------~-~d~e-----------~~~~l~~~L~~ 223 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLLP-----------G-EDED-----------IAHILREKLEN 223 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCc-----------c-ccHH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 999998854210 0 0000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcC-CC--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKTLLSA-TG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~--~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+...+.+. ++ .++.+|.+++|+|.+|+.
T Consensus 224 ~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 224 DGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 899999999999998766554432 33 368999999999999853
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4e-05 Score=74.39 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=72.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC---cc--------CCc----ccCHHHHHHHHHHHHhcCcEEEcCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP---WC--------MPR----LFTADIAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~---~~--------~~~----~~~~~~~~~~~~~l~~~GV~v~~~~ 253 (461)
+.++|+|||+|+.|+.+|..+.++|.++++++... .+ ++. ...+.+.+.+.+.....+++++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 46789999999999999999999999998886321 10 011 123455777788888888888765
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 254 ~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+++.++. .+....+..+++ .+.+|.||+|+|..|+..
T Consensus 84 ~v~~v~~--~~~~~~v~~~~~-~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 84 HINKVDL--QNRPFRLTGDSG-EYTCDALIIATGASARYL 120 (321)
T ss_pred EEEEEEe--cCCeEEEEecCC-EEEECEEEECCCCCCCCC
Confidence 5667765 222334544444 789999999999988643
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.5e-06 Score=81.41 Aligned_cols=98 Identities=18% Similarity=0.281 Sum_probs=73.8
Q ss_pred cEEEECCCHHHHHHHHHHHHC---CCcEEEEccCCccCC-ccc---------CHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 192 KAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMP-RLF---------TADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~-~~~---------~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
+|+|||+|+.|+.+|..+.+. +.+|+++++.+...- ..+ ..++...+.+.+++.||+++.+ +|+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 688999998875321 111 1233334567778889999875 78999
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~ 294 (461)
+. +++ .|.+.+|+++.+|.+|+|+|.+|+...
T Consensus 80 d~--~~~--~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DP--DRR--KVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ec--ccC--EEEECCCCcccccEEEEccCCCCCCCC
Confidence 76 332 578889989999999999998887543
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.3e-06 Score=79.17 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~~ 42 (461)
.+||+|||||++|++||++|++. |++ |+|+|+...
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~ 127 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVS 127 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCcc
Confidence 58999999999999999999986 666 999999865
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=76.91 Aligned_cols=137 Identities=25% Similarity=0.358 Sum_probs=97.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--cccCH-----------HHH--H--HHHHHHHhcCcEEEcCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA-----------DIA--A--FYEGYYANKGIKIIKGTV 254 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--~~~~~-----------~~~--~--~~~~~l~~~GV~v~~~~~ 254 (461)
+|+|||+|+.|+.+|..|++.+.+++++++.+.... ..+.. ... + .+.+.++..+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977653110 00011 001 1 334455778999999999
Q ss_pred EEEEEecCCCC-------EEEEEeCCCcEEecCEEEEccCCCCChhhh--------------------------------
Q 012545 255 AVGFTTNADGE-------VKEVKLKDGRTLEADIVVVGVGGRPLISLF-------------------------------- 295 (461)
Q Consensus 255 v~~i~~~~~g~-------~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~-------------------------------- 295 (461)
+.++... ++. .......++.++.+|.+|+|+|.+|+...+
T Consensus 81 v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 81 VVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp EEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred ccccccc-ccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc
Confidence 9999873 331 112244566789999999999977552210
Q ss_pred ------hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccC
Q 012545 296 ------KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 329 (461)
Q Consensus 296 ------~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~ 329 (461)
..++.. ++|++.||+++||+.|+|||+|||++.+
T Consensus 160 ~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccccC
Confidence 012333 5788999999999999999999999865
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.7e-06 Score=90.27 Aligned_cols=98 Identities=27% Similarity=0.433 Sum_probs=74.9
Q ss_pred EEEECCCHHHHHHHHHHHHCC---CcEEEEccCCccC------CcccC-----HHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 193 AVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCM------PRLFT-----ADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~------~~~~~-----~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
|+|||+|+.|+.+|..+.+.+ .+|+++++.+++. +.++. +++.....+.+++.||+++++++|+++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999987754 6899999887642 11111 112222356778899999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~ 294 (461)
+. +. ..|++.+|+++.+|.+|+|||.+|+...
T Consensus 81 d~--~~--k~V~~~~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DT--DQ--KQVITDAGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred EC--CC--CEEEECCCcEeeCCEEEECCCCCcCCCC
Confidence 86 33 3578889999999999999999887543
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-05 Score=81.70 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCc--EEecC-EEEEccC-CCCChhhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 296 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~--~i~aD-~vi~a~G-~~p~~~~~~ 296 (461)
...+...+.+.+++.|++++++++++++..+++|++.+|... +|+ .+.++ .||+|+| +.-|.++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 345566677788899999999999999998667888887653 343 46787 5999888 555565553
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.2e-06 Score=82.82 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 57999999999999999999999998 999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.8e-06 Score=81.71 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||+||||||+|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence 57999999999999999999999997 999999874
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.9e-06 Score=86.63 Aligned_cols=35 Identities=34% Similarity=0.533 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+||||||+|.||++||.++++.|.+ |+||||..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLS---VAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccC
Confidence 357999999999999999999998876 99999974
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-06 Score=75.00 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+|+|||+|+||++||..|+..|.. |+|+||+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCC
Confidence 3699999999999999999999987 999999864
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=80.01 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=74.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----ccCHHHHHHHH------------------------
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAAFYE------------------------ 239 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~~~~~~~~~~------------------------ 239 (461)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3578999999999999999999999999999988753321 02222222221
Q ss_pred -------------------HHHHh--cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 240 -------------------GYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 240 -------------------~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+.|.+ .+++++.++++++++.++++ ..+++++|+++.+|.||.|-|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 13568899999999874333 46888999999999999999976654
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.2e-06 Score=83.03 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 3899999999999999999999987 999999864
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.3e-06 Score=82.13 Aligned_cols=35 Identities=34% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+|+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 36899999999999999999999987 999999864
|
|
| >PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-06 Score=70.46 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=48.2
Q ss_pred CCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 404 ATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 404 ~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
..++|.|+++ ++|+|+|+|++|+++++ ++.++.+|+++++++++....-+.++|++
T Consensus 46 ~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se 104 (110)
T PF02852_consen 46 ETEGFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSE 104 (110)
T ss_dssp TTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGH
T ss_pred CcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhH
Confidence 3677888887 47999999999999988 69999999999999887777777777765
|
; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B .... |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00011 Score=73.48 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=73.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----------------cC----------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------FT---------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-----------------~~---------------------- 231 (461)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+..+. +.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 368999999999999999999999999999875431110 00
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 232 -----------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 232 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
..+-+++.+..++.|++++.+++++.+..++++.+.. +..++.++.++.||.|.|.
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVG-VRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEE-EEcCCEEEEcCEEEECCCc
Confidence 1234567778889999999999999999855554433 3344478999999999985
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=80.46 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=72.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-c---------CHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-~---------~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
..++|+|||+|+.|+.+|..|...+.+|++|++.++..-.. + ..++...+.+.++..|++++. .+|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEE
Confidence 45789999999999999999977678999999887643211 1 122333455667778888875 588999
Q ss_pred EecCCCCEEEEEe--------CCCcEEecCEEEEccCCCCChh
Q 012545 259 TTNADGEVKEVKL--------KDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 259 ~~~~~g~~~~v~~--------~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+. +.+...+.. .+|.++++|.+|+|+|.+|+..
T Consensus 88 d~--~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DF--EEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred Ec--CCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 76 333323311 4677899999999999987643
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.5e-06 Score=83.12 Aligned_cols=98 Identities=17% Similarity=0.300 Sum_probs=71.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||++|+.+|..|++.|.+ |+|+++.+... +.. ...+ .....+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il---~~~---------~~~~-----------~~~l~~~l~~ 233 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL---PTE---------DAEL-----------SKEVARLLKK 233 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC---CcC---------CHHH-----------HHHHHHHHHh
Confidence 46899999999999999999998876 99999886411 000 0000 1234566788
Q ss_pred cCcEEEcCCeEEEEeC--CCCE--EEcCCC--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADI--ASKT--LLSATG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~--~~~~--v~~~~~--~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++. +.+. +.+.++ +++++|.+++|+|.+|+.
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 8999999999999874 3332 223455 368999999999999953
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.5e-05 Score=73.92 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=35.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
+..||||||+|.+||+||.+|.+.|++ |+|+|..++..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~G 43 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRVG 43 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCcC
Confidence 578999999999999999999999998 99999998754
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=9e-06 Score=83.13 Aligned_cols=98 Identities=16% Similarity=0.256 Sum_probs=73.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +.. ... ......+.+++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~---------~~~-----------~~~~l~~~l~~ 225 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRIL---PGE---------DKE-----------ISKLAERALKK 225 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcC---CcC---------CHH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 99999986421 000 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCCC---cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSATG---LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++++.+++.+... +.+.++ +++++|.+|+|+|.+|..
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 99999999999999865544 334444 579999999999999853
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-05 Score=74.21 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=74.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-------------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------- 228 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 4899999999999999999999999999988542110
Q ss_pred ------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCcEEecCEEEEccCCCCC
Q 012545 229 ------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 229 ------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~~i~aD~vi~a~G~~p~ 291 (461)
....++.+.+.+.+++.|++++.+++++++..++++ ..+.+. ++.++.+|.||.|.|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR--VVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE--EEEEEcCccEEEEeCEEEECCCcchH
Confidence 011245567778888899999999999998763333 234444 3458999999999997653
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.5e-05 Score=78.67 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=30.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~~ 42 (461)
++|+|||||++||++|..|++.| .+ |+|+|+.+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCc
Confidence 37999999999999999999987 46 999999865
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=87.38 Aligned_cols=100 Identities=25% Similarity=0.504 Sum_probs=76.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccCCccC------Cccc----CHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCM------PRLF----TADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~------~~~~----~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
.++++|||+|+.|+.+|..|.+. +.+|+++.+.+++. +..+ ..++.....+.+++.||+++.++.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999764 46899998887642 1111 1122223356778899999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.++.. +. ..|.+.+|+++.+|.+|+|||.+|...
T Consensus 83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence 99976 33 357788898999999999999988654
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=82.18 Aligned_cols=96 Identities=20% Similarity=0.362 Sum_probs=71.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++....+.. ...+ .....+.+++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~~-------------~~~~-----------~~~l~~~l~~ 230 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQE-------------DPAV-----------GEAIEAAFRR 230 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCCC-------------CHHH-----------HHHHHHHHHh
Confidence 46899999999999999999999876 9999875321100 0000 1245667778
Q ss_pred cCcEEEcCCeEEEEeCCCCEE--EcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.++..+ .+.+ .++.+|.+++|+|.+|+.
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 999999999999998665543 3333 469999999999999953
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=84.41 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~~ 42 (461)
.+.+||+||||||+||++|..|++. |++ |+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCC
Confidence 4578999999999999999999995 887 999999864
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.2e-06 Score=83.75 Aligned_cols=119 Identities=22% Similarity=0.314 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCC--C---cccccccCCCCCCCC----------C--
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YER--P---ALSKAYLFPEGTARL----------P-- 64 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~--~---~~~~~~~~~~~~~~~----------~-- 64 (461)
+..|||+|||||.||+.||...+|.|.+ ++|+.-+.... +.. | .+.|+.+..+- +.+ .
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrEI-DALGG~Mg~~~D~~~I 77 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVREI-DALGGLMGKAADKAGI 77 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEee-hhccchHHHhhhhcCC
Confidence 3569999999999999999999999998 78887764421 111 1 11222222110 000 0
Q ss_pred Ccee---ecCCC--------CCCCCHhHHH-----HcCcEEEcCCeEEEEeCCCC----EEEcCCCcEEecCEEEEccCC
Q 012545 65 GFHV---CVGSG--------GERLLPEWYK-----EKGIELILSTEIVRADIASK----TLLSATGLIFKYQILVIATGS 124 (461)
Q Consensus 65 ~~~~---~~~~~--------~~~~~~~~~~-----~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~liiAtG~ 124 (461)
.+.. ..|.. +...+..+++ ..++.++++ .|.++..++. -|.+.+|..+.++.||++||.
T Consensus 78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 0000 00000 0011122222 257888887 7777765333 367889999999999999996
Q ss_pred Cc
Q 012545 125 TV 126 (461)
Q Consensus 125 ~~ 126 (461)
--
T Consensus 157 FL 158 (621)
T COG0445 157 FL 158 (621)
T ss_pred cc
Confidence 43
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9e-06 Score=82.42 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=73.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+|+++.+... +. +. .. ......+.+++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~---~~-----~d----~~-----------~~~~l~~~l~~ 201 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN---KL-----MD----AD-----------MNQPILDELDK 201 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc---hh-----cC----HH-----------HHHHHHHHHHh
Confidence 36899999999999999999998876 99999885311 00 00 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++. ..+.+.+++++++|.+++|+|.+|+.
T Consensus 202 ~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 202 REIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred cCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcCh
Confidence 9999999999999863 46777778889999999999999853
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.1e-06 Score=80.28 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc--------cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~--------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.... ++.+......+.+.+.|++++.++.+..+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 46799999999999999999999999999999987654211 2334444455667777999999988765532
Q ss_pred --cCCCCEEEEEe--CCCcEEecCEEEEccCCC-CC
Q 012545 261 --NADGEVKEVKL--KDGRTLEADIVVVGVGGR-PL 291 (461)
Q Consensus 261 --~~~g~~~~v~~--~~G~~i~aD~vi~a~G~~-p~ 291 (461)
..++....... .++..+.+|.||+|+|.. |.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred cccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence 00111111111 112247899999999973 43
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=81.51 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=72.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..+++.|.+ |+++++.+.... . + ... ......+.+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~-------~-~----d~~-----------~~~~l~~~l~~ 219 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELILR-------G-F----DDD-----------MRALLARNMEG 219 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCCc-------c-c----CHH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 999998754210 0 0 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.+++... ..+.+.+++++++|.+++|+|..|+
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 899999999999987533 3455667778999999999999884
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=78.30 Aligned_cols=100 Identities=21% Similarity=0.353 Sum_probs=78.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCcc----------cCHHHHHHHHHHHHhcC-cEEEcCCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKG-IKIIKGTVAV 256 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~~----------~~~~~~~~~~~~l~~~G-V~v~~~~~v~ 256 (461)
.+++||+|+|+-|+.++..|.+.- .+|++|++.+..+-.. -..++.-.+.+.+++.+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 578999999999999999999874 8899999988653211 12344456677887566 888854 788
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~ 294 (461)
+|+. +. ..|.++++..+++|.+|+|+|..++..-
T Consensus 82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~fg 115 (405)
T COG1252 82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYFG 115 (405)
T ss_pred EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcCC
Confidence 9976 44 3688888789999999999999887753
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=88.69 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+||++++.+.+.. . -++.++.+...+.+++.||++++++.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 478999999999999999999999999999998765422 1 1466777777888999999999886542
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC-CC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR-PL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~-p~ 291 (461)
..+++++.....+|.|++|+|.. |.
T Consensus 381 ------~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 ------KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 13555565556799999999974 54
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=81.18 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=74.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. + . .. ......+.+++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~~-----~-~---~~-----------~~~~l~~~L~~ 220 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPL---RG-----F-D---PD-----------IRETLVEEMEK 220 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCc---cc-----c-C---HH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 99999875311 00 0 0 00 01234566788
Q ss_pred cCcEEEcCCeEEEEeCCC-C--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS-K--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.+. . .+.+.+++++.+|.+++|+|.+|+.
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 999999999999997543 2 3566678889999999999999853
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.9e-06 Score=74.81 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||+||||||+||+||+.|++.|++ |+++|++..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCC
Confidence 58999999999999999999999998 999999854
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=98.10 E-value=6e-05 Score=78.14 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=48.3
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC--CC--CEEEEEe---CCCcEEecCEEEEccCCC
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKL---KDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~g--~~~~v~~---~~G~~i~aD~vi~a~G~~ 289 (461)
+...+.+.+.+.++++|++++++++|.+|+.+. ++ ++.++++ .+++.+.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 455688999999999999999999999998742 23 3677887 344579999999999954
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.8e-05 Score=80.44 Aligned_cols=97 Identities=23% Similarity=0.322 Sum_probs=70.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.. ...+ .....+ +.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll---~~~---------d~~~-----------~~~l~~-l~~ 218 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLL---RHL---------DDDI-----------SERFTE-LAS 218 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---ccc---------CHHH-----------HHHHHH-HHh
Confidence 47899999999999999999998876 99999985321 000 0000 011222 235
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.+++++.++.+.+++.++. .+.+.+++++++|.+++|+|.+|+.
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 6899999999999976544 3556678889999999999999954
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=85.55 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-------c-cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------L-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... . ++.+....-.+.+++.||++++++.+ .+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l 616 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV 616 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence 4679999999999999999999999999999987654221 1 24455556667888899999999876 2221
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+.+...+|.||+|||.++.
T Consensus 617 -----------e~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 617 -----------EQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------hhheeccCCEEEECcCCCCC
Confidence 22234568999999998754
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-05 Score=81.13 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=73.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||+|+.|+.+|..|++.|.+ |+|+++.+... + .+. .. ....+.+.+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~-----~~d----~~-----------~~~~l~~~l~~ 228 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLL---S-----FLD----DE-----------ISDALSYHLRD 228 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcC---C-----cCC----HH-----------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999885311 0 000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+..++..+. .+.+.+++++++|.+++|+|.+|+.
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 8999999999999875443 3455677789999999999999853
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.7e-05 Score=79.47 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=76.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc--------C---Cc---ccCHHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC--------M---PR---LFTADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~--------~---~~---~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
-.|+|||+|+.|+.+|..+++.|.+|+++++.+.- . +. ....++.+.+.+.+++.|++++ +++|+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 47999999999999999999999999999975420 0 11 0124667778888888999986 67888
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
++.. ++....+.+.+| ++.+|.+|+|+|.+|...
T Consensus 84 ~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 84 DVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 8876 334446777666 689999999999988654
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.2e-06 Score=60.79 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=27.6
Q ss_pred EEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 10 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 10 IIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
|||||++||++|..|++.|++ |+|+|+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE---EEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCc---EEEEecCccc
Confidence 899999999999999999876 9999999764
|
... |
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.3e-06 Score=82.63 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc-----EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-----~i~aD~vi~a~G~~p 290 (461)
+..+.-.......++|-+++..++|+++.. +++ +.+|...|.. ++.++.||.|+|-..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 566777778888999999999999999998 334 7788876542 589999999999543
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.8e-05 Score=76.79 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=74.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-Ccc----------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PRL---------------------------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-~~~---------------------------------------- 229 (461)
-.|+|||+|+.|+.+|..|++.|.+|.++++.+... +..
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999999999999865311 100
Q ss_pred ---cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 230 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 230 ---~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
-..++.+.+.+.+.+.|++++ ..+|++++..+++ ..|++++|+++.||.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 011233455666677899997 5689999873333 5788899999999999999998754
|
|
| >PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.7e-05 Score=58.55 Aligned_cols=80 Identities=21% Similarity=0.449 Sum_probs=62.9
Q ss_pred eEEEecCCcceEEccCCCC--cEEEecCCccccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhh
Q 012545 373 YFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 450 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 450 (461)
||||..++..++.+|...+ +.+..++.. ..+|..+|+++|+++|+..++ .+.++..+..+|+.+..+ +.+.|
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~----~~~~~~~y~~~g~lva~~~vn-~~~~~~~~rrli~~~~~~-~~~~l 74 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPE----SGKFVAFYLRDGRLVAAVSVN-RPRDLRAARRLIAAGARV-DPARL 74 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETT----TTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHH
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCC----CCcEEEEEEcCCEEEEEEecC-CHHHHHHHHHHHHCCCCc-CHHHh
Confidence 6899999999999997653 355666533 568888999999999999997 678899999999999977 78899
Q ss_pred hccCCCcc
Q 012545 451 KNEGLSFA 458 (461)
Q Consensus 451 ~~~~~~~~ 458 (461)
.++++++-
T Consensus 75 ~d~~~~L~ 82 (85)
T PF14759_consen 75 ADPSVDLR 82 (85)
T ss_dssp HSTTSHHH
T ss_pred cCCCCChH
Confidence 99998764
|
... |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=81.96 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=70.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.. . ..+.++.....+.+++.||+++.++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 468999999999999999999999999999998876521 1 13567777888889999999998877521
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.+.+++. .+.+|.||+|+|..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222333 37799999999975
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.3e-05 Score=80.15 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... . . . ... ......+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l-~--~----~-----~~~-----------~~~~l~~~l~~ 224 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLL-P--R----E-----DED-----------VAAAVREILER 224 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCC-c--c----c-----CHH-----------HHHHHHHHHHh
Confidence 47899999999999999999999876 99999986421 0 0 0 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEc---CCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLS---ATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.++.. +.+ .++.++++|.+|+|+|.+|+.
T Consensus 225 ~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 225 EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 99999999999999765432 333 234579999999999999853
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-05 Score=77.21 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC-CCCEEEEEeCC-CcEEecCEEEEccC-CCCChhhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKLKD-GRTLEADIVVVGVG-GRPLISLFK 296 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~~~-G~~i~aD~vi~a~G-~~p~~~~~~ 296 (461)
...+.+.+.+.+++.|++++++++++++..++ ++.+..+...+ +.++.++.||+|+| +..|.+++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence 45677888888999999999999999998743 56676766543 35899999999999 555555543
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=80.37 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... +. + ... ......+.+++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l---~~----~-----d~~-----------~~~~l~~~l~~ 225 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRAL---PN----E-----DAE-----------VSKEIAKQYKK 225 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCcC---Cc----c-----CHH-----------HHHHHHHHHHH
Confidence 46899999999999999999999876 99999875311 00 0 000 01234567788
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcC--CC--cEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.+++.+... +.+. ++ +++++|.+++|+|.+|+
T Consensus 226 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 226 LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 99999999999999765543 3332 45 36999999999999984
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.6e-05 Score=77.03 Aligned_cols=101 Identities=33% Similarity=0.544 Sum_probs=77.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC---Cc--ccC----------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PR--LFT---------------------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~~--~~~---------------------------------- 231 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++ .+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 479999999999999999999999999999875321 00 000
Q ss_pred ----------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 232 ----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 232 ----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
..+.+.+.+.+++.|++++.++++++++.++++ ..+++.+|+++.+|.||.|.|.++...
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 122334556677889999999999999874443 457778888999999999999877543
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.9e-05 Score=84.61 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 358999999999999999999999987 999999865
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-05 Score=79.80 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=71.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... .+ . ...+ .....+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-~~-------~----d~~~-----------~~~l~~~l~~ 219 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLL-PR-------E----EPEI-----------SAAVEEALAE 219 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCC-Cc-------c----CHHH-----------HHHHHHHHHH
Confidence 47899999999999999999999876 99999985421 00 0 0000 1234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcC---CCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSA---TGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~---~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.++. .+.+. +++++++|.+++|+|.+|+.
T Consensus 220 ~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 220 EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 8999999999999876543 23332 23579999999999999854
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=75.87 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--CCCc-EE-ecCEEEEccC-CCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR-TL-EADIVVVGVG-GRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G~-~i-~aD~vi~a~G-~~p~~~~~ 295 (461)
+..+...+.+.+++.|++++.++.++++..++++++.+|.. .+|+ .+ .++.||+|+| +.-|.+++
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHH
Confidence 55667777888889999999999999997655678888765 3443 23 4589999998 44444443
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=83.22 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=40.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccccCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|++... |..+. -.....|...|+.|+++++..
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999975432 11110 134567788899999988754
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=79.37 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=72.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+|+++.+... . . + + ..+ .....+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il-~------~-~-d---~~~-----------~~~~~~~l~~ 219 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVL-R------S-F-D---SMI-----------SETITEEYEK 219 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-c------c-c-C---HHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 99999885311 0 0 0 0 000 1234566778
Q ss_pred cCcEEEcCCeEEEEeCCC---CEEEcCCC-cEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIAS---KTLLSATG-LIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~-~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.+++.+. ..+.+.++ +.+.+|.+++|+|.+|+
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 899999999999987532 23556666 57999999999999984
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.02 E-value=8e-05 Score=78.30 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHH----hcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYA----NKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~----~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~ 288 (461)
...+...+.+.++ +.||+++.++.++++..++++++.+|... +|+ .+.|+.||+|||-
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 3444444444443 34899999999999987556688888764 453 5789999999995
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=68.96 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=75.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCc---------------cCCcccCHHHHHHHHHHHHhcCcEEEcCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW---------------CMPRLFTADIAAFYEGYYANKGIKIIKGTV 254 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~---------------~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~ 254 (461)
-.|+|||+|+.|+-+|-.+.+.+.+ +.+++.... +-.....+++.+.+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4689999999999999999999988 555544311 111124568888888888999999987 67
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 255 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 255 v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
|.+++..++ ...|++.+|+ ++|+.||+|+|..+...
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 777775222 6789999996 99999999999776554
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00017 Score=75.12 Aligned_cols=64 Identities=27% Similarity=0.211 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCc--EEec-CEEEEccC-CCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEA-DIVVVGVG-GRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~--~i~a-D~vi~a~G-~~p~~~~~ 295 (461)
...+...+.+.+++.||+++++++++++.. +++++.+|... +|. .+.+ +.||+|+| +.-|.+++
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHH
Confidence 566777888888999999999999999986 46788887543 443 3555 58999998 44454444
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.7e-05 Score=79.83 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=71.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... +.. ... ......+.+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~---------d~~-----------~~~~~~~~l~~ 236 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFL---AAA---------DEQ-----------VAKEAAKAFTK 236 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccC---CcC---------CHH-----------HHHHHHHHHHH
Confidence 46999999999999999999998876 99999886321 000 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCC--C--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.+... +.+.+ + +++++|.+++|+|.+|..
T Consensus 237 ~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 237 QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 89999999999999865443 33333 3 468999999999999853
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.4e-05 Score=76.65 Aligned_cols=102 Identities=25% Similarity=0.414 Sum_probs=75.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc------------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------ 228 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999987532110
Q ss_pred cc--------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cEEecCEEEEccCCCCCh
Q 012545 229 LF--------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 229 ~~--------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~~p~~ 292 (461)
.+ -..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|.||.|.|.+...
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 00 01334556667778899999999999998744442223333356 479999999999987754
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.7e-05 Score=78.16 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=76.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHc
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
.+++|||+|+.|+.+|..|+++|++ |+++|+.+...-. +.. +. ....+.+.++++
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~-------~~~-------~~--------~~~~~~~~l~~~ 191 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ-------LLD-------PE--------VAEELAELLEKY 191 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh-------hhh-------HH--------HHHHHHHHHHHC
Confidence 6999999999999999999999987 9999999753210 000 00 123567788889
Q ss_pred CcEEEcCCeEEEEeCCCCE-----EEcCCCcEEecCEEEEccCCCc
Q 012545 86 GIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~-----v~~~~~~~~~~d~liiAtG~~~ 126 (461)
||+++.+..+..++...+. +...++..+++|.+++++|.+|
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 9999999999999876643 4666778899999999999998
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.8e-05 Score=74.21 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------cc-----
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------LF----- 230 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------~~----- 230 (461)
+.+|+|||+|..|+-+|..|++.|.+|+++++.+.+... .+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 568999999999999999999999999999987542110 00
Q ss_pred --------C----------------HHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEc
Q 012545 231 --------T----------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 285 (461)
Q Consensus 231 --------~----------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a 285 (461)
+ .++.+.+.+.+.+. +++++.+++++++..++++ ..+++.+|+++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEEC
Confidence 0 01123344444454 4999999999999863333 4578889989999999999
Q ss_pred cCCCCCh
Q 012545 286 VGGRPLI 292 (461)
Q Consensus 286 ~G~~p~~ 292 (461)
.|.....
T Consensus 162 dG~~S~~ 168 (396)
T PRK08163 162 DGVKSVV 168 (396)
T ss_pred CCcChHH
Confidence 9987655
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.2e-05 Score=78.17 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|..|+.+|..|++.|.+ |+++++.+...-. . ... ......+.+++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l~~-------~-----d~~-----------~~~~l~~~L~~ 230 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVLPG-------E-----DAD-----------AAEVLEEVFAR 230 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCCCC-------C-----CHH-----------HHHHHHHHHHH
Confidence 36899999999999999999998876 9999987531100 0 000 01234567788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+.. .+.+.+++++++|.+++|+|.+|+.
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 9999999999999864433 3555678889999999999999853
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=73.16 Aligned_cols=104 Identities=19% Similarity=0.266 Sum_probs=78.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--c---------------------------c-----------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--R---------------------------L----------- 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--~---------------------------~----------- 229 (461)
.-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 34799999999999999999999999999997764310 0 0
Q ss_pred ------------cC-------HHHHHHHHHHHH-hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 230 ------------FT-------ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 230 ------------~~-------~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.+ .++.+.+.+.+. ..|+++++++++++++.++++.+..|++++|+++.+|+||-|-|.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 00 012233344443 3579999999999999866665567889999999999999999987
Q ss_pred CChh
Q 012545 290 PLIS 293 (461)
Q Consensus 290 p~~~ 293 (461)
....
T Consensus 165 S~vR 168 (388)
T PRK07045 165 SMIR 168 (388)
T ss_pred hHHH
Confidence 6543
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.7e-05 Score=80.66 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=70.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 46789999999999999999999999999999876542 11 14667777777888999999999875411
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCC-CCCh
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI 292 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~-~p~~ 292 (461)
.+.+.+. ...+|.||+|+|. .|..
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence 2333333 3468999999997 5643
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0002 Score=75.17 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-Cc--EEec-CEEEEccCC-CCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEA-DIVVVGVGG-RPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G~--~i~a-D~vi~a~G~-~p~~~~~ 295 (461)
...+...+.+.+++.||+++.++.++++.. +++++.+|...+ |+ ++.+ +.||+|+|. ..|.+++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 556778888899999999999999999886 367787877644 33 4676 789999994 4444444
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.9e-05 Score=78.96 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|||+|||||+||+.+|..+++.|.+ |+|+|+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence 6999999999999999999999987 99999874
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.8e-05 Score=79.03 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=73.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..+++.|.+ |+|+++.+... . . + . .. ......+.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~l-~------~-~-d---~~-----------~~~~l~~~l~~ 256 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELPL-R------G-F-D---DE-----------MRAVVARNLEG 256 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCcC-c------c-c-C---HH-----------HHHHHHHHHHh
Confidence 46899999999999999999998876 99999875310 0 0 0 0 00 01234556788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+.. .+.+.+++++++|.+++|+|.+|+.
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 9999999999999875433 3556677789999999999999853
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.9e-05 Score=78.45 Aligned_cols=97 Identities=12% Similarity=0.209 Sum_probs=70.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..+++.|.+ |+++|+.+... . .+ ... ......+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il------~-~~-----d~~-----------~~~~l~~~l~~ 227 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRIC------P-GT-----DTE-----------TAKTLQKALTK 227 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCC------C-CC-----CHH-----------HHHHHHHHHHh
Confidence 57899999999999999999999876 99999875321 0 00 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcC-----CCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSA-----TGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~-----~~~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.++..+... +.+. +++++++|.+++|+|.+|+
T Consensus 228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 89999999999999754333 2221 2357999999999999984
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=75.37 Aligned_cols=137 Identities=24% Similarity=0.288 Sum_probs=89.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------------------------------c----------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------F---------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------------------------------~---------- 230 (461)
|+|+|||+|.+|+-.+..|.+.|.+++++++++.+..-+ +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 689999999999999999999999999999986542210 0
Q ss_pred -CHHHHHHHHHHHHhcCc--EEEcCCcEEEEEecCCC---CEEEEEeCC-Cc--EEecCEEEEccCC--CCChhhh-hcc
Q 012545 231 -TADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADG---EVKEVKLKD-GR--TLEADIVVVGVGG--RPLISLF-KGQ 298 (461)
Q Consensus 231 -~~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g---~~~~v~~~~-G~--~i~aD~vi~a~G~--~p~~~~~-~~~ 298 (461)
..++.+++++..+..++ .++++++|++++..++. ....|++.+ |+ +..+|.||+|+|. .|+.+.. -.+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 14678888888888877 58899999999874432 234566644 42 4568999999995 4655431 123
Q ss_pred cccCCCcEEeCCCCCC----CCCCEEEeCcccc
Q 012545 299 VAENKGGIETDDFFKT----SADDVYAVGDVAT 327 (461)
Q Consensus 299 ~~~~~g~i~vd~~~~t----~~~~vya~GD~~~ 327 (461)
++.=+|.+.-...++. ..+.|-++|-..+
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 3332455555544443 4678888887554
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00011 Score=73.81 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=75.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc----------cCCc--ccC---------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CMPR--LFT--------------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~----------~~~~--~~~--------------------------- 231 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+. ..++ .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999998651 0000 000
Q ss_pred -----------------------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEE
Q 012545 232 -----------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 282 (461)
Q Consensus 232 -----------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~v 282 (461)
..+.+.+.+.+++.|++++.++++++++.++++ ..|++.+|+++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 012234455666779999999999999874443 4678889989999999
Q ss_pred EEccCCCCCh
Q 012545 283 VVGVGGRPLI 292 (461)
Q Consensus 283 i~a~G~~p~~ 292 (461)
|.|.|.....
T Consensus 161 VgAdG~~S~v 170 (405)
T PRK05714 161 VAADGANSAV 170 (405)
T ss_pred EEecCCCchh
Confidence 9999987654
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=73.11 Aligned_cols=99 Identities=30% Similarity=0.440 Sum_probs=75.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCc-----------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 899999986431000
Q ss_pred ----------cc---------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 229 ----------LF---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 229 ----------~~---------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
.+ ...+.+.+.+.+++.|++++.+++|++++.+++ ...+++++|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE--GVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--EEEEEECCCCEEEeCEEE
Confidence 00 012345566777788999999999999986333 346788899899999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
.|.|.....
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999987654
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.1e-05 Score=77.23 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=69.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. +. ..+ .....+ +.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll---~~-----~d----~~~-----------~~~l~~-~~~ 221 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLL---RH-----LD----EDI-----------SDRFTE-IAK 221 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCccc---cc-----cC----HHH-----------HHHHHH-HHh
Confidence 46899999999999999999998876 99999875411 00 00 000 011222 234
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.+++++.++.+.+++.++. .+.+.+++++++|.+++|+|.+|+
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 6899999999999976544 345567778999999999999984
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-05 Score=78.46 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++... .. ... .. ......+.+++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~--l~--~~d---------~~-----------~~~~l~~~l~~ 234 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFD---VTVAVRSIP--LR--GFD---------RQ-----------CSEKVVEYMKE 234 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCcc--cc--cCC---------HH-----------HHHHHHHHHHH
Confidence 35899999999999999999999876 999986421 10 000 00 01245667788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+..+..... .+.+.+++++.+|.+++|+|.+|+.
T Consensus 235 ~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 235 QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 9999999988887764332 3556678889999999999999853
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.1e-05 Score=79.57 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=70.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++....+. . ...+ .....+.+++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~~---------~----d~~~-----------~~~l~~~l~~ 322 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSK---VTILARSTLFFR---------E----DPAI-----------GEAVTAAFRA 322 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCccccc---------c----CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 999997532110 0 0000 1234567788
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+..++.++.. +.+.++ ++.+|.+++|+|..|+.
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 99999999999998755443 333344 59999999999999853
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=72.27 Aligned_cols=98 Identities=22% Similarity=0.348 Sum_probs=73.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCccCCc--------ccC-------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPR--------LFT------------------------------- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~--------~~~------------------------------- 231 (461)
.|+|||+|+.|+-+|..|++.| .+|+++++.+..-.. .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3799999999999999999999 999999986432110 000
Q ss_pred ------------------------HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 232 ------------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 232 ------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
.++.+.+.+.+.+ .|++++.+++++++..++++ ..+++++|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 1223444555566 49999999999999874443 46778889899999999999
Q ss_pred CCCCC
Q 012545 287 GGRPL 291 (461)
Q Consensus 287 G~~p~ 291 (461)
|....
T Consensus 159 G~~S~ 163 (382)
T TIGR01984 159 GANSK 163 (382)
T ss_pred CCChH
Confidence 97653
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-05 Score=82.17 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--CCCc--EEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G~--~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.+++.|++++++++|++|..++++.+..+.. .+|+ ++.+|.||+++..
T Consensus 217 ~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 217 PGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred cchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 34677888888999999999999999999854554434443 2453 6899999999874
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.2e-05 Score=77.58 Aligned_cols=97 Identities=14% Similarity=0.261 Sum_probs=70.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
..+++|||||+.|+.+|..+... |.+ |+|+++.+... +. + ... ......+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il---~~-----~----d~~-----------~~~~l~~~ 240 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMIL---RG-----F----DST-----------LRKELTKQ 240 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCccc---cc-----c----CHH-----------HHHHHHHH
Confidence 46899999999999999776654 554 99999886421 00 0 000 01244566
Q ss_pred HHHcCcEEEcCCeEEEEeCCC---CEEEcCCCcEEecCEEEEccCCCcc
Q 012545 82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
+++.|++++.++.+.++.... ..+.+.+++++++|.+++|+|.+|.
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 788999999999999987432 2466667778999999999999984
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=71.82 Aligned_cols=101 Identities=27% Similarity=0.394 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-----------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR----------------------------------- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~----------------------------------- 228 (461)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+. ..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999865310 00
Q ss_pred --------ccC---------------HHHHHHHHHHH-HhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEE
Q 012545 229 --------LFT---------------ADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 229 --------~~~---------------~~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
.++ ..+.+.+.+.+ +..|++++.++++++++.++++ ..|++++|+++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence 000 00112222333 3468999999999999873333 467888999999999999
Q ss_pred ccCCCCChh
Q 012545 285 GVGGRPLIS 293 (461)
Q Consensus 285 a~G~~p~~~ 293 (461)
|.|..+...
T Consensus 162 AdG~~S~vr 170 (392)
T PRK09126 162 ADSRFSATR 170 (392)
T ss_pred eCCCCchhh
Confidence 999877653
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.9e-05 Score=76.61 Aligned_cols=96 Identities=22% Similarity=0.326 Sum_probs=71.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... +. + ...+ .....+.+++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~----~-----~~~~-----------~~~l~~~l~~ 211 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFL---PR----E-----DRDI-----------ADNIATILRD 211 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC---CC----c-----CHHH-----------HHHHHHHHHh
Confidence 46899999999999999999998876 99999875311 00 0 0000 1234566788
Q ss_pred cCcEEEcCCeEEEEeCCCCEE--EcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.+++.++..+ ...++ ++.+|.+++|+|.+|+
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPA 255 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcC
Confidence 999999999999997655443 33344 5899999999999985
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.1e-05 Score=78.96 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Ccc-cCH-HHHHHHHHHHHhcCcEEEcCCcEEEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTA-DIAAFYEGYYANKGIKIIKGTVAVGFT 259 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~~-~~~-~~~~~~~~~l~~~GV~v~~~~~v~~i~ 259 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ++. ++.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 46789999999999999999999999999999866431 110 222 3666667888899999999985521
Q ss_pred ecCCCCEEEEEeCCC-cEEecCEEEEccCC-CCCh
Q 012545 260 TNADGEVKEVKLKDG-RTLEADIVVVGVGG-RPLI 292 (461)
Q Consensus 260 ~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~-~p~~ 292 (461)
.+.+++. +.+.+|.||+|+|. .|..
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222332 24569999999997 4643
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.4e-05 Score=77.59 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=69.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++....+. .. ..+ .....+.+++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~----~d---------~~~-----------~~~l~~~L~~ 232 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG----FD---------QDC-----------ANKVGEHMEE 232 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCc---EEEEEecccccc----cC---------HHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 999987421110 00 000 1234567788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCC---cEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+..+..... .+.+.++ +++++|.+++|+|..|+
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 9999999988877764333 3444444 37999999999999985
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.5e-05 Score=78.65 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46789999999999999999999999999999887542 11 146677777778899999999999876321
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+.+++ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12468999999998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00032 Score=70.96 Aligned_cols=138 Identities=26% Similarity=0.287 Sum_probs=94.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCccCCc-----------------------------cc--CHHHHHH
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPR-----------------------------LF--TADIAAF 237 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~~-----------------------------~~--~~~~~~~ 237 (461)
..+|+|||+|.+|+-+|..|.+.|.. +.++++.+.+... .+ -..+.++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 45799999999999999999999998 9999988542210 00 0126778
Q ss_pred HHHHHHhcCcE--EEcCCcEEEEEecCCCCEEEEEeCCCcEE--ecCEEEEccCC--CCChhhhhcccccCCCcEEeC-C
Q 012545 238 YEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDGRTL--EADIVVVGVGG--RPLISLFKGQVAENKGGIETD-D 310 (461)
Q Consensus 238 ~~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~G~~i--~aD~vi~a~G~--~p~~~~~~~~~~~~~g~i~vd-~ 310 (461)
+...+++.++. +..++.|..+..++++....|++++|.+. .+|.||+|+|. .|+.+-+. +...-.|.+.-- +
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~HS~~ 166 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRILHSAD 166 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEEchhc
Confidence 88888888765 44667777777766777788999888664 59999999995 44443322 222222333322 2
Q ss_pred ---CCCCCCCCEEEeCccccc
Q 012545 311 ---FFKTSADDVYAVGDVATF 328 (461)
Q Consensus 311 ---~~~t~~~~vya~GD~~~~ 328 (461)
..+-.-++|-++|--++.
T Consensus 167 ~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 167 WPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred CCCccccCCCeEEEECCCccH
Confidence 223356889999876653
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=74.60 Aligned_cols=99 Identities=24% Similarity=0.405 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------cc------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------LF------ 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------~~------ 230 (461)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 46999999999999999999999999999987432110 00
Q ss_pred -----------------------C-HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCcEEecCEEE
Q 012545 231 -----------------------T-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 283 (461)
Q Consensus 231 -----------------------~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~~i~aD~vi 283 (461)
+ ..+.+.+.+.+++.|+++++++++++++.++++ ..+++ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG--VTARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--EEEEEEeCCCeEEEEeCEEE
Confidence 0 112345566777889999999999999874444 24444 556789999999
Q ss_pred EccCCCCC
Q 012545 284 VGVGGRPL 291 (461)
Q Consensus 284 ~a~G~~p~ 291 (461)
.|.|.+..
T Consensus 162 gADG~~S~ 169 (502)
T PRK06184 162 GADGGRSF 169 (502)
T ss_pred ECCCCchH
Confidence 99997653
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.3e-05 Score=77.17 Aligned_cols=96 Identities=19% Similarity=0.304 Sum_probs=70.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+..|..|++.|.+ |+++++....+. .. .. ......+.+++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~l~~---------~d----~~-----------~~~~l~~~L~~ 240 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSR---VTILARSTLLFR---------ED----PL-----------LGETLTACFEK 240 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCCCCCc---------ch----HH-----------HHHHHHHHHHh
Confidence 36899999999999999999998876 999987532110 00 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+..++.+... +...++ ++.+|.+++|+|..|+.
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 99999999999988754443 333444 58999999999999853
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.8e-05 Score=81.84 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=36.6
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCC--CCCcEEEEeCCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV--KPGELAIISKEAVA 43 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~--~~~~V~vie~~~~~ 43 (461)
||++.+||+|||||++||+||..|++.|. +..+|+|+|+....
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 88888999999999999999999999871 11249999999764
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00022 Score=71.15 Aligned_cols=101 Identities=25% Similarity=0.324 Sum_probs=77.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC-ccCCcc-----------------c---------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCMPRL-----------------F--------------------- 230 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~-~~~~~~-----------------~--------------------- 230 (461)
...|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.+.. +
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 3579999999999999999999999999999972 221110 0
Q ss_pred ---------------------CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeC-CCcEEecCEEEEccC
Q 012545 231 ---------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVG 287 (461)
Q Consensus 231 ---------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~-~G~~i~aD~vi~a~G 287 (461)
-.++.+.+.+.+.+.+ |+++.+++|+.++.++ +.+ .++++ +|+++.||+||-|=|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v-~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGV-TVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-Cce-EEEEcCCCcEEecCEEEECCC
Confidence 0133556667777666 9999999999999844 333 37777 999999999999999
Q ss_pred CCCCh
Q 012545 288 GRPLI 292 (461)
Q Consensus 288 ~~p~~ 292 (461)
.....
T Consensus 160 ~~S~v 164 (387)
T COG0654 160 ANSAV 164 (387)
T ss_pred CchHH
Confidence 76544
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00025 Score=70.90 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=72.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 229 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------------------------------------------ 229 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 68999999999999999999999999998775431100
Q ss_pred --cC-----------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 230 --FT-----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 --~~-----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
++ .++.+.+.+.+ ..|++++++++|++++.++++ ..+++++|+++++|.||-|-|.+.
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence 00 01112222223 347999999999999874333 468889999999999999999766
Q ss_pred Chh
Q 012545 291 LIS 293 (461)
Q Consensus 291 ~~~ 293 (461)
...
T Consensus 159 ~vR 161 (391)
T PRK07588 159 HVR 161 (391)
T ss_pred cch
Confidence 553
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4e-05 Score=75.02 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=80.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
....||++|+|..|+.+|..|.....+ |++|++++. +.. .++.+ .......+.++
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~-~~~------~lf~~---------------~i~~~~~~y~e 266 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPW-LLP------RLFGP---------------SIGQFYEDYYE 266 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHhcCce---EEEEccCcc-chh------hhhhH---------------HHHHHHHHHHH
Confidence 356799999999999999999997665 999999964 111 11111 11245678899
Q ss_pred HcCcEEEcCCeEEEEeCCC--C--EEEcCCCcEEecCEEEEccCCCccccccc
Q 012545 84 EKGIELILSTEIVRADIAS--K--TLLSATGLIFKYQILVIATGSTVSITSLT 132 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~--~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~ 132 (461)
+.+++++.++.+.+++... + .|.+.+++++.+|.|++.+|++|..+...
T Consensus 267 ~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 267 NKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred hcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 9999999999998886544 2 37788999999999999999999665443
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=71.74 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--c--cC-------------HH--------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L--FT-------------AD-------------------- 233 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--~--~~-------------~~-------------------- 233 (461)
++|+|+|+|+.|+.+|..|++.|.+|+++++.+.+... . +. +.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999987543210 0 00 00
Q ss_pred ---------------------HHHHHHHHHH---hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 234 ---------------------IAAFYEGYYA---NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 234 ---------------------~~~~~~~~l~---~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
....+.+.|. ..|+++++++++++++.+++ ...+++++|+++++|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~--~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGD--SVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCC--eEEEEECCCCeEEeCEEEECCCCC
Confidence 0112223332 35899999999999986322 356889999999999999999977
Q ss_pred CChh
Q 012545 290 PLIS 293 (461)
Q Consensus 290 p~~~ 293 (461)
....
T Consensus 160 S~vR 163 (372)
T PRK05868 160 SNVR 163 (372)
T ss_pred chHH
Confidence 6553
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00025 Score=71.70 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=72.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------------cc--------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------LF-------------------------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------~~-------------------------- 230 (461)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+... .+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 47999999999999999999999999999986432100 00
Q ss_pred ---------------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 ---------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ---------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
-.++-+++.+.+++.|++++.+++|+++..+ ++.+..+. .+|.++.||.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 0011234566677789999999999998763 45444444 567789999999999975
Q ss_pred C
Q 012545 290 P 290 (461)
Q Consensus 290 p 290 (461)
.
T Consensus 164 s 164 (428)
T PRK10157 164 S 164 (428)
T ss_pred H
Confidence 4
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00025 Score=70.72 Aligned_cols=99 Identities=26% Similarity=0.365 Sum_probs=75.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc---------cc-------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------LF------------------------------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~---------~~------------------------------- 230 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 47999999999999999999999999999987553110 00
Q ss_pred ------------------------CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEc
Q 012545 231 ------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 285 (461)
Q Consensus 231 ------------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a 285 (461)
...+.+.+.+.+++.| ++++ +++++++..++++ ..+++.+|+++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence 1123344556667777 9998 8899999763333 4688888888999999999
Q ss_pred cCCCCCh
Q 012545 286 VGGRPLI 292 (461)
Q Consensus 286 ~G~~p~~ 292 (461)
.|.....
T Consensus 163 dG~~S~v 169 (388)
T PRK07608 163 DGAHSWV 169 (388)
T ss_pred CCCCchH
Confidence 9987643
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=76.41 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..+++.|.+ |+++++.+... +. + . ..+ .....+.+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~il---~~-----~-d---~~i-----------~~~l~~~L~~ 290 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRLL---RK-----F-D---ETI-----------INELENDMKK 290 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEeccccc---cc-----C-C---HHH-----------HHHHHHHHHH
Confidence 57899999999999999999999876 99999875311 00 0 0 000 1234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC---EEEc-CCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK---TLLS-ATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~-~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.+..+.+++.+.. .+.. .+++++++|.+++|+|.+|+.
T Consensus 291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 8999999999999875432 2333 334579999999999998853
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.9e-05 Score=75.79 Aligned_cols=98 Identities=12% Similarity=0.221 Sum_probs=70.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. +. .. ......+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~-----~d----~~-----------~~~~~~~~l~~ 222 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRIL---PL-----ED----PE-----------VSKQAQKILSK 222 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC---cc-----hh----HH-----------HHHHHHHHHhh
Confidence 47899999999999999999999876 99999886421 00 00 00 01234556677
Q ss_pred cCcEEEcCCeEEEEeCCCC-EEEc----CCCcEEecCEEEEccCCCcccc
Q 012545 85 KGIELILSTEIVRADIASK-TLLS----ATGLIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~v~~----~~~~~~~~d~liiAtG~~~~~~ 129 (461)
. ++++.++.+.+++.... .+.+ .+++++++|.+++|+|.+|+.+
T Consensus 223 ~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 223 E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 7 99999999999975543 3432 2335699999999999998543
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00027 Score=70.32 Aligned_cols=99 Identities=21% Similarity=0.358 Sum_probs=74.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c--ccC-------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R--LFT------------------------------- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~--~~~------------------------------- 231 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. . .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 389999999999999999999999999998853200 0 000
Q ss_pred -------------------------HHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEc
Q 012545 232 -------------------------ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 285 (461)
Q Consensus 232 -------------------------~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a 285 (461)
.++.+.+.+.+++.| ++++.+++|++++.++ +. ..+++++|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DH-VELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Ce-eEEEECCCCEEEeeEEEEe
Confidence 112334555566667 9999999999998733 33 4678889999999999999
Q ss_pred cCCCCCh
Q 012545 286 VGGRPLI 292 (461)
Q Consensus 286 ~G~~p~~ 292 (461)
.|.....
T Consensus 159 dG~~S~v 165 (385)
T TIGR01988 159 DGANSKV 165 (385)
T ss_pred CCCCCHH
Confidence 9976543
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00027 Score=72.64 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~----------------------------------------- 229 (461)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 479999999999999999999999999998653221110
Q ss_pred c-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 230 F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 ~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+ ...+.+.+.+.+.+.|+++ .+++|+++..+++ ....+.+.+|.++.|+.||.|.|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 0122345566667789998 5779999986333 33335667888999999999999876
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=66.94 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCC---CEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g---~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
...+-+.++..|-.+.++-++..+..+.++ ....|.-..+++..+..+|-|+|.+...--.
T Consensus 199 ~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa 262 (453)
T KOG2665|consen 199 TLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAA 262 (453)
T ss_pred HHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHH
Confidence 344445588889999999999998864443 2233443446789999999999987654433
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0003 Score=72.19 Aligned_cols=99 Identities=16% Similarity=0.286 Sum_probs=74.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------------c-
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------L- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------~- 229 (461)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+..... .
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 46999999999999999999999999999887532100 0
Q ss_pred ---------cC------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 230 ---------FT------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 230 ---------~~------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
+. ..+.+.+.+.+++.|++++.+++|++++.++++ ..+.+.+|+++.|+.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence 00 012234456677889999999999999874444 3456678889999999999997
Q ss_pred CCC
Q 012545 289 RPL 291 (461)
Q Consensus 289 ~p~ 291 (461)
+..
T Consensus 164 ~S~ 166 (487)
T PRK07190 164 RSF 166 (487)
T ss_pred CHH
Confidence 653
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=71.44 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=71.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc----cCHHH---------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----FTADI--------------------------------- 234 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~----~~~~~--------------------------------- 234 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.... +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 68999999999999999999999999999886532110 00000
Q ss_pred ---------------HHHHHHHHHh--cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 235 ---------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 235 ---------------~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+..+.+.|.+ .+.++++++++++++.+ ++. ..+++++|+++.+|+||-|-|.+..+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHHH
Confidence 1112233322 14578899999999863 333 467889999999999999999776553
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.9e-05 Score=76.83 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=68.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+++. +. .++.++.....+.+++.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 34799999999999999999999999999999887642 11 135567777778889999999999876411
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+. .++....+|.|++|+|..
T Consensus 220 --------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 --------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------cC-HHHHHhhCCEEEEccCCC
Confidence 00 011235789999999987
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00045 Score=61.25 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=74.0
Q ss_pred HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------cC-------------------------
Q 012545 183 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT------------------------- 231 (461)
Q Consensus 183 ~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------~~------------------------- 231 (461)
+.+.+.....|+|||+|++|+-+|..|++.|.+|.++++...+.... |+
T Consensus 10 ~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g 89 (230)
T PF01946_consen 10 EDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG 89 (230)
T ss_dssp HHHHHHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE
T ss_pred HHHHhhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe
Confidence 33333356789999999999999999999999999999875542211 11
Q ss_pred ------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-----------CCcEEecCEEEEccCCCCChh
Q 012545 232 ------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 232 ------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.++...+....-+.|++++....|+.+...+++++.+|... |.-.+.+..||-|||...+.-
T Consensus 90 ~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 90 YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 13334444444558999999999999876444777777663 234799999999999877653
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.6e-05 Score=79.35 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
++++|||||||+|||+||++|...|++ |+|+|..+..+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEeccCCcC
Confidence 468999999999999999999999998 99999998743
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.79 E-value=7e-05 Score=76.05 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEccCCccCCcc---------cCHHHHHHHHHHHHhcCcEEEcCCcEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMPRL---------FTADIAAFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~--~g~~Vtli~~~~~~~~~~---------~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+..-. ....+...+.+.++..||+++.+..+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46799999999999999999986 799999999998754210 1123344566777888999988755421
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
.+.+++- ...+|.||+|+|..+
T Consensus 105 ----------dvtl~~L-~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 105 ----------DVSLSEL-RDLYHVVVLAYGAES 126 (491)
T ss_pred ----------cccHHHH-hhhCCEEEEecCCCC
Confidence 2333333 246899999999875
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=75.70 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=64.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++++|+|+|.+|+++|..|.++|.+|+++++.+. +....+.+.|++.||+++.+..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 467999999999999999999999999999986542 234455677888999998775432
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
....+|.||+++|..|+.+++
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHH
Confidence 024589999999999999865
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.9e-05 Score=81.68 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=70.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. -++.++.+...+.+++.||++++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 46789999999999999999999999999999865431 11 13556666767888999999999875411
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCC-CCCh
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI 292 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~-~p~~ 292 (461)
.+++++.....+|.||+|+|. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 233444445679999999997 4653
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00038 Score=69.43 Aligned_cols=97 Identities=19% Similarity=0.278 Sum_probs=72.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------c--------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------L-------------- 229 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------~-------------- 229 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3799999999999999999999999999976532100 0
Q ss_pred -c-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 230 -F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 -~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+ ...+.+.+.+.+.+.|++++ ..+++.+..+ ++....|++++|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 01333555666677899886 5578888763 2334567888888999999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00017 Score=70.00 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
..++..+.+.+++.|-++.+++.|.+|.-+ +|++.+|.++||+++.+..|+...+.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCch
Confidence 467888899999999999999999999984 59999999999999999888886663
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00025 Score=73.23 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC-ccCC-----c--------------cc--------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCMP-----R--------------LF-------------------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~-~~~~-----~--------------~~-------------------- 230 (461)
-.|+|||+|..|+++|..+++.|.+|.++++.. .+.. . .+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 369999999999999999999999999998863 1100 0 00
Q ss_pred -------------CH-HHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 231 -------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 231 -------------~~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
|. ...+.+.+.+++. |++++ ...|+++.. +++.+.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 0123344445544 78875 557888775 466778899999999999999999994
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00028 Score=69.07 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=73.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 229 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------------------------------------------ 229 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 58999999999999999999999999999875532110
Q ss_pred -------------------------c-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCc--EEecC
Q 012545 230 -------------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD 280 (461)
Q Consensus 230 -------------------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~--~i~aD 280 (461)
+ -..+.+.+.+.+++.|++++++++++.+..+.++....+... +|+ ++.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0 024566777888888999999999999987555433333333 343 68999
Q ss_pred EEEEccCCCCChh
Q 012545 281 IVVVGVGGRPLIS 293 (461)
Q Consensus 281 ~vi~a~G~~p~~~ 293 (461)
+||-|-|.+..+.
T Consensus 163 lvVgADG~~S~vR 175 (356)
T PF01494_consen 163 LVVGADGAHSKVR 175 (356)
T ss_dssp EEEE-SGTT-HHH
T ss_pred eeecccCcccchh
Confidence 9999999877553
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.1e-05 Score=79.92 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---Cc--EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~--~i~aD~vi~a~G~~p 290 (461)
+..+...+.+..+++|++++.+++|+++..+ ++ ...+++.+ |+ ++.++.||.|+|...
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 4566666777788999999999999999863 33 24555543 53 689999999999654
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=80.14 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=65.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 261 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 261 (461)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... ..+.+..+...+.+++.||+++++... .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d---- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D---- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence 468999999999999999999999999999987653221 124455556667788899999887421 1
Q ss_pred CCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 262 ADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 262 ~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+.+.+.+...+|.||+|+|.++.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCC
Confidence 11222334568999999998753
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00036 Score=70.26 Aligned_cols=101 Identities=25% Similarity=0.386 Sum_probs=71.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC----Cc--ccC--------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----PR--LFT-------------------------------- 231 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~----~~--~~~-------------------------------- 231 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+- +. .+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4579999999999999999999999999999875421 00 000
Q ss_pred -----------------------HHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCC-C--cEEecCEEEE
Q 012545 232 -----------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVV 284 (461)
Q Consensus 232 -----------------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G--~~i~aD~vi~ 284 (461)
..+.+.+.+.+.+. |+++++++++++++.++++ ..|++.+ + .++.||+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence 11122333444443 7999999999999874443 3466653 2 3699999999
Q ss_pred ccCCCCCh
Q 012545 285 GVGGRPLI 292 (461)
Q Consensus 285 a~G~~p~~ 292 (461)
|.|.....
T Consensus 176 ADG~~S~v 183 (415)
T PRK07364 176 ADGARSPI 183 (415)
T ss_pred eCCCCchh
Confidence 99987655
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=73.84 Aligned_cols=97 Identities=12% Similarity=0.280 Sum_probs=68.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... +... ..+ .....+.+++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~il---~~~d---------~~~-----------~~~~~~~l~~ 227 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQVI---PAAD---------KDI-----------VKVFTKRIKK 227 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCCC---CcCC---------HHH-----------HHHHHHHHhh
Confidence 46899999999999999999999876 99999886411 0000 000 1123445556
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCC--C--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~liiAtG~~~~~ 128 (461)
. ++++.++.+..++..+.. +.+.+ + +++++|.+++|+|.+|+.
T Consensus 228 ~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 228 Q-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred c-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 6 999999999988754433 33332 2 469999999999999954
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00052 Score=68.38 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=72.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc--cC---C---c--ccCH----------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--CM---P---R--LFTA---------------------------- 232 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~--~~---~---~--~~~~---------------------------- 232 (461)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+. +. . + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 3699999999999999999999999999997641 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEE
Q 012545 233 ---------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 233 ---------------------------~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
.+...+.+.+++ .|++++.++++++++.++++ ..+++++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 001112222233 37999999999999874444 468889999999999999
Q ss_pred ccCCCCChh
Q 012545 285 GVGGRPLIS 293 (461)
Q Consensus 285 a~G~~p~~~ 293 (461)
|.|......
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999877654
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0005 Score=68.90 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=73.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------ccC-----------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFT----------------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------~~~----------------------------- 231 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 47999999999999999999999999999987541100 000
Q ss_pred ---------------------------HHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 232 ---------------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 232 ---------------------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
..+.+.+.+.+.+. |+++++++++++++.++++ ..+++.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 01122333444443 7999999999999874443 46778899999999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
-|-|.+...
T Consensus 162 gADG~~S~v 170 (400)
T PRK08013 162 GADGANSWL 170 (400)
T ss_pred EeCCCCcHH
Confidence 999977654
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00018 Score=67.06 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+..+||+|||+|.|||.||.+|+..|.+ |+++|++..
T Consensus 2 d~~~~dvivvgaglaglvaa~elA~aG~~---V~ildQEge 39 (552)
T COG3573 2 DGLTADVIVVGAGLAGLVAAAELADAGKR---VLILDQEGE 39 (552)
T ss_pred CcccccEEEECccHHHHHHHHHHHhcCce---EEEEccccc
Confidence 34578999999999999999999999987 999999765
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00048 Score=68.77 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC----------------------------Ccc------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----------------------------PRL------------ 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~----------------------------~~~------------ 229 (461)
.-.|+|||+|+.|+-+|..|++.|.+|+++++.+... ...
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 3479999999999999999999999999999764100 000
Q ss_pred ----------c---------------CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 230 ----------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 230 ----------~---------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
+ ...+.+.+.+.+++. |++++.+++++++..++++ ..|.+++|+++.+|.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence 0 011223444555555 9999999999999863333 46778888899999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
.|.|.....
T Consensus 163 ~AdG~~S~v 171 (391)
T PRK08020 163 GADGANSQV 171 (391)
T ss_pred EeCCCCchh
Confidence 999987754
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.002 Score=63.04 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=40.4
Q ss_pred CHhHHHHcCcEEEcCCeEEEEeCCCC---EEEcCCCcEEecCEEEEccCCC
Q 012545 78 LPEWYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGST 125 (461)
Q Consensus 78 ~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~liiAtG~~ 125 (461)
+.+.+.+.|++++++++|.+++.+.. .+.+.+|.++.+|+||+|.|-.
T Consensus 179 i~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 44556678999999999999998775 5778899899999999999943
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0008 Score=67.45 Aligned_cols=137 Identities=20% Similarity=0.197 Sum_probs=93.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------------c
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------L 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------~ 229 (461)
.++++|||+|++|+-.|..|.+.|.++++++|.+.+..- .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 689999999999999999999999999999998653210 0
Q ss_pred -cC-HHHHHHHHHHHHhcCc--EEEcCCcEEEEEecCCCCEEEEEeCCC----cEEecCEEEEccCCC--CChhhhhcc-
Q 012545 230 -FT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR--PLISLFKGQ- 298 (461)
Q Consensus 230 -~~-~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~G----~~i~aD~vi~a~G~~--p~~~~~~~~- 298 (461)
-+ .++.+++....+..++ .+.+++++.++....+|. ..|.+.++ ++..+|.|++|+|.. |+.+..+..
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 01 1556777788888776 577888888888733233 45665443 467899999999966 666555432
Q ss_pred ccc-CCCcEEeCCCCCC---CCCCEEEeCcccc
Q 012545 299 VAE-NKGGIETDDFFKT---SADDVYAVGDVAT 327 (461)
Q Consensus 299 ~~~-~~g~i~vd~~~~t---~~~~vya~GD~~~ 327 (461)
+.. ....+..-++-.. ..+.|.++|--.+
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence 222 3333433333322 4578888885443
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=75.22 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.+...+.+++.||++++++.+.. ..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~ 220 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI 220 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence 3578999999999999999999999999999988765211 13556666667788999999999876532 10
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.. +.....+|.||+|+|..
T Consensus 221 ---------~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 221 ---------TA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred ---------CH-HHHHhhCCEEEEecCCC
Confidence 00 11134789999999987
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=81.34 Aligned_cols=93 Identities=24% Similarity=0.230 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 261 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 261 (461)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..+.++.+...+.+++.||++++++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence 57899999999999999999999999999998765421 1 13567788888889999999999865411
Q ss_pred CCCCEEEEEeCCCc-EEecCEEEEccCCC-CCh
Q 012545 262 ADGEVKEVKLKDGR-TLEADIVVVGVGGR-PLI 292 (461)
Q Consensus 262 ~~g~~~~v~~~~G~-~i~aD~vi~a~G~~-p~~ 292 (461)
.+++.+-. ...+|.||+|+|.. |..
T Consensus 506 ------~~~~~~l~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 506 ------TFTVPQLMNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred ------ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence 11111111 24589999999974 543
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00061 Score=67.60 Aligned_cols=99 Identities=14% Similarity=0.276 Sum_probs=72.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCC----ccCC--c--cc---------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WCMP--R--LF--------------------------------- 230 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~----~~~~--~--~~--------------------------------- 230 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.. + .+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999752 1000 0 00
Q ss_pred --------------------CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 --------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 --------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
-.++.+.+.+.+.+.+ ++++.+++++++..++++ ..+.++++ ++.+|+||-|-|.+
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 0122344455555554 889999999999874443 45778776 89999999999987
Q ss_pred CChh
Q 012545 290 PLIS 293 (461)
Q Consensus 290 p~~~ 293 (461)
....
T Consensus 160 S~vR 163 (374)
T PRK06617 160 SKVR 163 (374)
T ss_pred chhH
Confidence 6553
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=77.55 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=70.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--------cccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++.++.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 368999999999999999999999999999998876421 114667777777888999999999987632
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+ +.+.+ ....+|.|++|+|..+.
T Consensus 386 --~-----~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --D-----ITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 0 11111 13468999999997643
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00066 Score=68.59 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=72.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC------------------Ccc-----------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL----------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~------------------~~~----------------------- 229 (461)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. +..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 479999999999999999999999999998764321 000
Q ss_pred ----c----------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 230 ----F----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 230 ----~----------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+ ...+-+++.+.+++.|++++.+++|+++.. +++.+..+.. ++.++.||.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 001123456667788999999999999876 3455545554 44589999999999975
Q ss_pred C
Q 012545 290 P 290 (461)
Q Consensus 290 p 290 (461)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0007 Score=67.98 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC-CccC------Cc--ccCH----------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM------PR--LFTA---------------------------- 232 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~~------~~--~~~~---------------------------- 232 (461)
...|+|||+|+.|+-+|..|++.|.+|+++++. +... .+ .+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999985 1100 00 0000
Q ss_pred ----------------------------HHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 233 ----------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 233 ----------------------------~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
.+.+.+.+.+.+ .|++++.++++++++.++++ ..|++++|+++.||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 112233333444 47999999999999863333 46888999999999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
.|-|.....
T Consensus 162 gADG~~S~v 170 (405)
T PRK08850 162 GADGANSWL 170 (405)
T ss_pred EeCCCCChh
Confidence 999976544
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00071 Score=70.59 Aligned_cols=101 Identities=25% Similarity=0.323 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 457999999999999999999999999999987532110
Q ss_pred ---ccC-----------------HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEEE
Q 012545 229 ---LFT-----------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVV 283 (461)
Q Consensus 229 ---~~~-----------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~vi 283 (461)
.++ +.+.+.+.+.+.+ .|+++++++++++++.++++ ..++++ +| +++.+|.||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEcCCCCEEEEEEEEEE
Confidence 000 0122334444544 48999999999999985555 345554 56 479999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
-|-|.+...
T Consensus 168 gADG~~S~v 176 (538)
T PRK06183 168 GCDGANSFV 176 (538)
T ss_pred ecCCCchhH
Confidence 999976544
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00069 Score=70.83 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------c------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------~------ 229 (461)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 457999999999999999999999999999887532110 0
Q ss_pred -------------------c-CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCc-EEecCEEEEccC
Q 012545 230 -------------------F-TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVG 287 (461)
Q Consensus 230 -------------------~-~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-~i~aD~vi~a~G 287 (461)
+ ...+.+.+.+.+++. ++++++++++++++.++++....++..+|+ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 001223344555554 799999999999987544433334444564 699999999999
Q ss_pred CCCCh
Q 012545 288 GRPLI 292 (461)
Q Consensus 288 ~~p~~ 292 (461)
.+...
T Consensus 183 ~~S~v 187 (547)
T PRK08132 183 ARSPL 187 (547)
T ss_pred CCcHH
Confidence 87654
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=73.54 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|+.||++++.+..... .++.++.+...+.|++.|++|+.+.++-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~--- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR--- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence 3689999999999999999999999999999988765321 14668888999999999999999877531
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+++++= .-+.|.|++++|.
T Consensus 199 -------~it~~~L-~~e~Dav~l~~G~ 218 (457)
T COG0493 199 -------DITLEEL-LKEYDAVFLATGA 218 (457)
T ss_pred -------cCCHHHH-HHhhCEEEEeccc
Confidence 1111111 2234999999994
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00026 Score=71.87 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=57.3
Q ss_pred CcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 214 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 214 ~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
..-.+..+.+-.+. +..+.+.++...++.|..++.++.|+++... ++...+|.+.-| .+++..||-|+|+...
T Consensus 172 v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGVWAR 244 (856)
T ss_pred heeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhHHHH
Confidence 33455566555443 4567889999999999999999999999874 444458999998 7999999999998653
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00029 Score=65.47 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=52.7
Q ss_pred CCcEEEEccCCccCCcccCHHHHHHHHHHHHhc------CcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEE
Q 012545 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK------GIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIV 282 (461)
Q Consensus 213 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~------GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~v 282 (461)
|+.|---+|+.+.+|. .-++.+.+...+++. -+++.++++|+.|.. .+|++.+|+.- +| ..+.+|.|
T Consensus 122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V 198 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV 198 (477)
T ss_pred CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence 4555445577777776 456667776666653 378899999999995 67888777764 34 35788999
Q ss_pred EEccCC
Q 012545 283 VVGVGG 288 (461)
Q Consensus 283 i~a~G~ 288 (461)
|+|+|-
T Consensus 199 VlatGG 204 (477)
T KOG2404|consen 199 VLATGG 204 (477)
T ss_pred EEecCC
Confidence 999984
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.8e-05 Score=74.57 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=33.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
++|+|+|||.|||+||.+|+++|+. |+|+|.++...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYD---VTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---eEEEeccCccC
Confidence 4899999999999999999999997 99999998744
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00089 Score=67.09 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=70.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc------------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------ 228 (461)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999987542100
Q ss_pred -cc-----C---------------HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEe---CCCcEEecCEEE
Q 012545 229 -LF-----T---------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 283 (461)
Q Consensus 229 -~~-----~---------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~~i~aD~vi 283 (461)
.+ + .++.+.+.+.+.+ .|+++++++++++++.++++ ..+++ .+++++++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence 00 0 1122334444444 47999999999999874333 34444 344679999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
-|-|.+...
T Consensus 161 gADG~~S~v 169 (400)
T PRK06475 161 ACDGVWSML 169 (400)
T ss_pred ECCCccHhH
Confidence 999976544
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00085 Score=69.32 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=71.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC------------------Cc--cc---------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PR--LF--------------------- 230 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~------------------~~--~~--------------------- 230 (461)
.|+|||+|..|+++|..+++.|.+|.++++..... .. .+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998753110 00 00
Q ss_pred ------------CH-HHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 ------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ------------~~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
|. .+.+.+.+.+++. |++++.+ .++++..++++.+.+|.+.+|..+.||.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 00 1123455556665 7888754 6777765346778899999999999999999999763
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00017 Score=76.66 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. ..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 35789999999999999999999999999999887641 11 1356666777788889999999887541 11
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+.+++. ...+|.||+|+|..+.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 112221 2358999999998753
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00029 Score=74.28 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHh-HHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE-WYK 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (461)
..+++|||||+.|+..|..|++.|.+ |+++|+.+... + .+. ..+ ...... +++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll---~-----~~d----~ei-----------s~~l~~~ll~ 365 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLL---P-----LLD----ADV-----------AKYFERVFLK 365 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccc---c-----cCC----HHH-----------HHHHHHHHhh
Confidence 36899999999999999999998875 99999986421 0 000 000 012223 235
Q ss_pred HcCcEEEcCCeEEEEeCCC--CEEE--cC-------CC--------cEEecCEEEEccCCCccc
Q 012545 84 EKGIELILSTEIVRADIAS--KTLL--SA-------TG--------LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~--~~v~--~~-------~~--------~~~~~d~liiAtG~~~~~ 128 (461)
+.||+++.++.|.+++... +.+. +. ++ +++++|.+++|+|.+|+.
T Consensus 366 ~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 366 SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 6899999999999987543 2232 21 11 269999999999999954
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=65.87 Aligned_cols=100 Identities=30% Similarity=0.314 Sum_probs=72.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------------------------------------c--
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------------L-- 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------------------------------~-- 229 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 347999999999999999999999999999987432100 0
Q ss_pred -------c---------------CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 230 -------F---------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 230 -------~---------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
+ ...+.+.+.+.+.+.+ +. +.+++|++++.++++ ..+++++|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence 0 0122334445555554 55 778999999863333 45788889899999999999
Q ss_pred CCCCCh
Q 012545 287 GGRPLI 292 (461)
Q Consensus 287 G~~p~~ 292 (461)
|.....
T Consensus 164 G~~S~v 169 (388)
T PRK07494 164 GRNSPV 169 (388)
T ss_pred CCCchh
Confidence 987643
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=75.85 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=67.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|++++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46799999999999999999999999999999876532 11 13566666667888899999999886521
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+ +.+.+ ....+|.|++|+|..+
T Consensus 403 --~-----i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 --D-----ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence 0 11111 1236899999999654
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=66.38 Aligned_cols=101 Identities=23% Similarity=0.335 Sum_probs=71.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----cc-----------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF----------------------------------- 230 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----~~----------------------------------- 230 (461)
...|+|||+|++|+-+|..|++.|.+|+++++.+..... .+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 457999999999999999999999999999986431000 00
Q ss_pred ---------------------CHHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEE--eCCCc-EEecCEEEEc
Q 012545 231 ---------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK--LKDGR-TLEADIVVVG 285 (461)
Q Consensus 231 ---------------------~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~--~~~G~-~i~aD~vi~a 285 (461)
...+.+.+.+.+++ .|++++.+++++++..+ ++.+..+. +.+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 01223344444444 48999999999999873 44443343 45664 7999999999
Q ss_pred cCCCCC
Q 012545 286 VGGRPL 291 (461)
Q Consensus 286 ~G~~p~ 291 (461)
.|....
T Consensus 165 dG~~S~ 170 (407)
T PRK06185 165 DGRHSR 170 (407)
T ss_pred CCCchH
Confidence 997654
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00059 Score=68.75 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=69.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCccCCcc----cCH-------------HH-------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----FTA-------------DI------------------- 234 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~~----~~~-------------~~------------------- 234 (461)
+|+|||+|..|+-+|..|++.| .+|+++++.+.+.... +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 5999999876532100 000 00
Q ss_pred ----------------------HHHHHHHHHhc--CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 235 ----------------------AAFYEGYYANK--GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 235 ----------------------~~~~~~~l~~~--GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.|.+. .+.++++++|++++.++++ ..+.+++|+++++|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 01112222211 4567889999999874443 578889999999999999999765
Q ss_pred Ch
Q 012545 291 LI 292 (461)
Q Consensus 291 ~~ 292 (461)
..
T Consensus 160 ~v 161 (414)
T TIGR03219 160 AL 161 (414)
T ss_pred HH
Confidence 43
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00094 Score=74.44 Aligned_cols=102 Identities=24% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc----------cCHHHHHHHHHHHHhc-CcEEEcCCcEEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANK-GIKIIKGTVAVGF 258 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~----------~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i 258 (461)
...|+|||+|+.|+.+|..+++.|.+|++++..+.+.... -..++...+.+.+++. +++++.+++|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 4689999999999999999999999999999876543211 1123334455556655 5999999999887
Q ss_pred EecCCCCEEEEEe-C-------CC------cEEecCEEEEccCCCCChh
Q 012545 259 TTNADGEVKEVKL-K-------DG------RTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 259 ~~~~~g~~~~v~~-~-------~G------~~i~aD~vi~a~G~~p~~~ 293 (461)
.. ++.+..+.. . ++ .++.+|.||+|||.+|...
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 53 222211210 0 11 2689999999999877543
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00045 Score=71.76 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+..|..|++.|.+ |+|+++.+... +. + . .. ......+.+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~il---~~-----~-d---~~-----------~~~~l~~~L~~ 305 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKVL---RG-----F-D---EE-----------VRDFVAEQMSL 305 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeccccc---cc-----c-C---HH-----------HHHHHHHHHHH
Confidence 47899999999999999999998865 99999875311 00 0 0 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCC-CCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIA-SKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.++... ... +.+.+++...+|.+++|+|.+|+.
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 99999999999888642 222 333444444589999999999853
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=75.60 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+|||||++|+++|..|++.|++ |+|+|+...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcCC
Confidence 468999999999999999999999987 999999753
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0016 Score=67.07 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=67.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCcc---------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL--------------------------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~~--------------------------------------- 229 (461)
++|+|||+|+.|+-+|..|.+.+ .+|+++++++.+..+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999998764 4799998864332110
Q ss_pred --------------------cCHHHHHH---HHHHHHhcC--cEEEcCCcEEEEEecCCCCEEEEEeCC-CcEEecCEEE
Q 012545 230 --------------------FTADIAAF---YEGYYANKG--IKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVV 283 (461)
Q Consensus 230 --------------------~~~~~~~~---~~~~l~~~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~-G~~i~aD~vi 283 (461)
++..+.+. +.+.+.+.| +.++.+++|+++...+++ ..+++.+ |..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 00011111 223334455 788888899999874333 4577655 4689999999
Q ss_pred EccCCCCC
Q 012545 284 VGVGGRPL 291 (461)
Q Consensus 284 ~a~G~~p~ 291 (461)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99997543
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=72.32 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||+|||||++|+.||..|++.|++ |+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCc
Confidence 5999999999999999999999988 999997653
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00037 Score=70.04 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=61.7
Q ss_pred CCCcEEEECCCHHHHHHHHHH-HHCCCcEEEEccCCccCCcc---c------CHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMPRL---F------TADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l-~~~g~~Vtli~~~~~~~~~~---~------~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
.+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+..-. . -..+.+.+.+.+...+++++.+..+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 468999999999999999965 56799999999998764310 0 124445555556667888875433211
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+..++ -.-.+|.||+|+|..+.
T Consensus 117 ---------Dvt~ee-L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEE-LRNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHH-HHhcCCEEEEEcCCCCC
Confidence 111111 12368999999997753
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00012 Score=76.53 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=35.8
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHH-cCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~-~g~~~~~V~vie~~~~ 42 (461)
||...+|+||||||+||+.+|.+|++ .|++ |+|||+++.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~---VlvlEaG~~ 40 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVS---VLLLEAGGP 40 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCe---EEEecCCCc
Confidence 78889999999999999999999999 6776 999999964
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00013 Score=73.96 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.3
Q ss_pred CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 246 GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
+++++++++|++|...+++ ..|++.+|+++.+|.||+|+..
T Consensus 210 ~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNG--VKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred cCceeCCCeeEEEEEcCCc--EEEEECCCcEEEcCEEEEecCH
Confidence 6789999999999985444 4688889988999999999863
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00013 Score=76.23 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|...+||||||+|.|||+||.++++.|.+ |+|+||.+
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~~ 37 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQEN 37 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 44689999999999999999999999987 99999987
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=97.47 E-value=6.2e-05 Score=73.86 Aligned_cols=91 Identities=27% Similarity=0.503 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEe---C--CCcEEecCEEEEccCCCCChhhh-hccccc--CC
Q 012545 233 DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL---K--DGRTLEADIVVVGVGGRPLISLF-KGQVAE--NK 303 (461)
Q Consensus 233 ~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~---~--~G~~i~aD~vi~a~G~~p~~~~~-~~~~~~--~~ 303 (461)
.+.+.+.+.+++. |++++++++|++|+..+++. ..|.. . +..++.++.|++..|-.. ..++ +.++.. .-
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~gy 259 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKGY 259 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhccc
Confidence 3444555556665 99999999999999866663 23433 2 235799999999999764 3455 445543 44
Q ss_pred CcEEeC-CCCCCCCC--------CEEEeCcc
Q 012545 304 GGIETD-DFFKTSAD--------DVYAVGDV 325 (461)
Q Consensus 304 g~i~vd-~~~~t~~~--------~vya~GD~ 325 (461)
|+..|. .+++++.| -||..-.+
T Consensus 260 ggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 260 GGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred CCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 556665 66777544 35665554
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00098 Score=65.92 Aligned_cols=94 Identities=22% Similarity=0.285 Sum_probs=64.5
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCc--------ccCHHHHH-------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR--------LFTADIAA------------------------- 236 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~--------~~~~~~~~------------------------- 236 (461)
.|+|||+|..|+.+|..|.+. |.+|.++++.+.+.+. .+++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 378999999999999999987 9999999987643221 01111100
Q ss_pred ---------HHHHH-HHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 237 ---------FYEGY-YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 237 ---------~~~~~-l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+.+. +++.+..++.+.+|+++.. ++ |++.+|+++.||.||.|.|.++.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence 11111 2333444777888888843 32 55688999999999999998764
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=73.72 Aligned_cols=95 Identities=21% Similarity=0.362 Sum_probs=27.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------------------------------------------
Q 012545 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------------- 228 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------------------------------------------- 228 (461)
|+|||||+.|+-+|..+++.|.+|.|+++.+.+...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 799999999999999999999999999998654210
Q ss_pred ----ccCHHH-HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---CcEEecCEEEEccCC
Q 012545 229 ----LFTADI-AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GRTLEADIVVVGVGG 288 (461)
Q Consensus 229 ----~~~~~~-~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~~i~aD~vi~a~G~ 288 (461)
.++++. ...+.+.+++.|+++++++.+.++.. +++++.+|++.+ ..++.|+.+|=|+|.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 011111 22345666778999999999999987 466788888865 467999999999994
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=71.10 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+||+|||||++|+++|..|++.|.+ |+|+|+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCC
Confidence 5999999999999999999998876 999999764
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.002 Score=64.34 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=71.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHC---CCcEEEEccCC-c--cCCc--------------------cc--------------
Q 012545 191 GKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEP-W--CMPR--------------------LF-------------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~---g~~Vtli~~~~-~--~~~~--------------------~~-------------- 230 (461)
-+|+|||+|+.|+-+|..|++. |.+|+++++.. . ..+. ..
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4799999999999999999998 99999999841 1 0000 00
Q ss_pred ------------C---------------HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEE
Q 012545 231 ------------T---------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 282 (461)
Q Consensus 231 ------------~---------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~v 282 (461)
. .++.+.+.+.+.+ .|++++.+++++++..++++ ..+++++|.++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 0 0112234444444 47999999999999763333 4578888888999999
Q ss_pred EEccCCCCCh
Q 012545 283 VVGVGGRPLI 292 (461)
Q Consensus 283 i~a~G~~p~~ 292 (461)
|.|.|.....
T Consensus 162 I~AdG~~S~v 171 (395)
T PRK05732 162 VAADGSHSAL 171 (395)
T ss_pred EEecCCChhh
Confidence 9999987643
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00016 Score=74.60 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAP 44 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~~~~ 44 (461)
..+||+|||||++||+||..|.+. |++ |+|+|+++...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecCCCCC
Confidence 357999999999999999999998 886 99999997643
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=75.49 Aligned_cols=35 Identities=23% Similarity=0.557 Sum_probs=32.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+||+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCE---EEEEcccc
Confidence 468999999999999999999999987 99999975
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=75.87 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=32.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 458999999999999999999999987 99999975
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=63.83 Aligned_cols=96 Identities=28% Similarity=0.336 Sum_probs=71.2
Q ss_pred EEEECCCHHHHHHHHHH--HHCCCcEEEEccCCcc--CCcc----c----------------------------------
Q 012545 193 AVVVGGGYIGLELSAAL--KINNIDVSMVYPEPWC--MPRL----F---------------------------------- 230 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l--~~~g~~Vtli~~~~~~--~~~~----~---------------------------------- 230 (461)
|+|||+|+.|+-+|..| .+.|.+|.++++.+.. -... .
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 78999999999999999 7789999999876543 1100 0
Q ss_pred ----CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 231 ----TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ----~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
...+.+.+.+.+.+.| .++.+++|++++.+++ ...+++++|+++.|+.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 0133445566666444 5667889999987433 45788999999999999999996554
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=65.29 Aligned_cols=102 Identities=23% Similarity=0.339 Sum_probs=74.0
Q ss_pred cEEEECCCHHHHHHHHHHHH----CCCcEEEEccCC--ccC------------Cc-------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP--WCM------------PR------------------------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~----~g~~Vtli~~~~--~~~------------~~------------------------- 228 (461)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... .+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 48999999999999999998 799999999832 210 00
Q ss_pred ------------------ccC--------------HHHHHHHHHHHHhcC---cEEEcCCcEEEEEec-----CCCCEEE
Q 012545 229 ------------------LFT--------------ADIAAFYEGYYANKG---IKIIKGTVAVGFTTN-----ADGEVKE 268 (461)
Q Consensus 229 ------------------~~~--------------~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~-----~~g~~~~ 268 (461)
.++ ..+.+.+.+.+++.+ +++++++++++++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 000 112334455566654 999999999999742 1233357
Q ss_pred EEeCCCcEEecCEEEEccCCCCChh
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
|++.+|+++.+|+||-|-|......
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhH
Confidence 8889999999999999999876553
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00093 Score=68.66 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=59.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||+|.+|+++|..|+++|++ |+++|+.+... .....+.+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~~------------------------------~~~~~~~l~~ 62 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDER------------------------------HRALAAILEA 62 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchhh------------------------------hHHHHHHHHH
Confidence 46899999999999999999999986 99999764200 0122455677
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTS 133 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g 133 (461)
.|++++.+..+. ....+|.+|+++|..|..|.+..
T Consensus 63 ~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 63 LGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred cCCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHHHHH
Confidence 899988875332 12468999999999986554333
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00034 Score=68.33 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..|||||||||.||..||...+|.|.+ -+|+..+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCc---eEEeeccc
Confidence 368999999999999999999999987 57777753
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0023 Score=64.08 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEccCCccCCc-------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN----IDVSMVYPEPWCMPR------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g----~~Vtli~~~~~~~~~------------------------------------- 228 (461)
...|+|||+|+.|+-+|..|++.| .+|+++++.+..-..
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 457999999999999999999986 469999986321000
Q ss_pred -c-------------------c-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC---cEEecCEEEE
Q 012545 229 -L-------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVV 284 (461)
Q Consensus 229 -~-------------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G---~~i~aD~vi~ 284 (461)
. . -..+.+.+.+.+++.|++++.++++++++.++++ ..+++.+| +++.+|+||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence 0 0 0244566777788889999999999999774444 45667654 6899999999
Q ss_pred ccCCC
Q 012545 285 GVGGR 289 (461)
Q Consensus 285 a~G~~ 289 (461)
|-|..
T Consensus 169 ADG~~ 173 (398)
T PRK06996 169 AEGGL 173 (398)
T ss_pred CCCCC
Confidence 99964
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0028 Score=54.42 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=32.2
Q ss_pred CcEEE-cCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 246 GIKII-KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 246 GV~v~-~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
|+++. ...+|+++...+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 54443 35688999885555 5788899999999999999995
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00015 Score=69.44 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEec-CCCCEEEEEeCC--Cc----EEecCEEEEccCCCCChhhh-hccc
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKD--GR----TLEADIVVVGVGGRPLISLF-KGQV 299 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~~~--G~----~i~aD~vi~a~G~~p~~~~~-~~~~ 299 (461)
....++...++..+++++++++|++|..+ +++++..|+..+ +. .+.++.||+|.|.--...++ .+++
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 34556666666669999999999999652 466677776643 33 46789999999954444433 4443
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00099 Score=64.45 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-c---------CHHHHHHHHHHHHhc--CcEEEcCCcEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANK--GIKIIKGTVAV 256 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-~---------~~~~~~~~~~~l~~~--GV~v~~~~~v~ 256 (461)
+.++|+|+|+|+.|+.++..|-..-.+|+++.+.++++-.. + -..+.+-+....++. +++++ .++..
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccE
Confidence 46899999999999999999988889999999988764321 1 345667776666655 45544 55666
Q ss_pred EEEecCCCCEEE--EEeCCC----cEEecCEEEEccCCCCChh
Q 012545 257 GFTTNADGEVKE--VKLKDG----RTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 257 ~i~~~~~g~~~~--v~~~~G----~~i~aD~vi~a~G~~p~~~ 293 (461)
.++. +.+.+. ..++++ ..+.+|.+|+|+|..||+.
T Consensus 133 ~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 133 KIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 7765 333223 233445 4689999999999998875
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00053 Score=72.56 Aligned_cols=91 Identities=20% Similarity=0.135 Sum_probs=67.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
+.++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .++.++.....+.+++.|++++.++.|..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 467899999999999999999999999999988775421 1 134555566667889999999999776320
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+.+++ ....+|.||+|+|..+
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999753
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0016 Score=57.44 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=73.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEc--------------------cCCccCCcccCHHHHHHHHHHHHhcCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVY--------------------PEPWCMPRLFTADIAAFYEGYYANKGIKI 249 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~GV~v 249 (461)
..+|+|||+|+.+.-.|-.+++...+-.+++ .-|.+-.....+++.+.+++...+.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 4589999999999999988888655544433 22333334467899999999999999999
Q ss_pred EcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 250 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 250 ~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+++ .|.++.. ..+...+.+ |.+.+.||.||+|+|.....
T Consensus 88 ~tE-tVskv~~--sskpF~l~t-d~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 88 ITE-TVSKVDL--SSKPFKLWT-DARPVTADAVILATGASAKR 126 (322)
T ss_pred eee-ehhhccc--cCCCeEEEe-cCCceeeeeEEEecccceee
Confidence 865 5677765 444455655 44589999999999976543
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0036 Score=62.55 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=72.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--Cc----------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR---------------------------------------- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~~---------------------------------------- 228 (461)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... ..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 469999999999999999999999999999876310 00
Q ss_pred ----cc-------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEe-cCCCCEEEEEe-CCCc--EEecCEEEEccC
Q 012545 229 ----LF-------------TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKL-KDGR--TLEADIVVVGVG 287 (461)
Q Consensus 229 ----~~-------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~~~~v~~-~~G~--~i~aD~vi~a~G 287 (461)
.+ -..+.+.+.+...+.|+++++++++++++. ++++ ..|++ .+|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence 00 012223344445668999999999999875 2232 34555 4664 689999999999
Q ss_pred CCCCh
Q 012545 288 GRPLI 292 (461)
Q Consensus 288 ~~p~~ 292 (461)
.+..+
T Consensus 161 ~~S~v 165 (392)
T PRK08243 161 FHGVS 165 (392)
T ss_pred CCCch
Confidence 77654
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0003 Score=68.97 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=33.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
...+|||||||.|||+||..|.++|+.+ |+|+|.....
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~dRI 57 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFID--VLILEASDRI 57 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCce--EEEEEecccc
Confidence 4578999999999999999999888775 9999999764
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00027 Score=72.33 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.+.+.+.+.+++ ++++++++|++|+.++++ ..|++.+|+++.+|.||+|+.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCC
Confidence 455555555544 579999999999974433 467788888899999999986
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00074 Score=67.18 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=62.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCccc-CHH-----------------HHHHHHHHHHhcCcEEEcCC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF-TAD-----------------IAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~-~~~-----------------~~~~~~~~l~~~GV~v~~~~ 253 (461)
+|+|||+|..|+|+|..|++.|.+|+++++.+....... ... ....+.+.++..|..+...+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~a 81 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITAA 81 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeehh
Confidence 689999999999999999999999999997766433210 000 11234566666665555444
Q ss_pred cEEEEEecCCCCEE------------------EEEeCCC--cEE-ecCEEEEccCCCCChhhhh
Q 012545 254 VAVGFTTNADGEVK------------------EVKLKDG--RTL-EADIVVVGVGGRPLISLFK 296 (461)
Q Consensus 254 ~v~~i~~~~~g~~~------------------~v~~~~G--~~i-~aD~vi~a~G~~p~~~~~~ 296 (461)
..+.+.. .+... .+...++ ..+ ..|.||+|||..++..+.+
T Consensus 82 d~~~Ipa--gg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG~~~s~~La~ 143 (433)
T TIGR00137 82 DRHAVPA--GGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATGPLTSPALSE 143 (433)
T ss_pred hhhCCCC--CceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCCCCccHHHHH
Confidence 4444321 11100 0111111 123 3579999999988877653
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00057 Score=72.96 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+-+|..|.+.|+.|++.+|++++.. . -+|..+.++-.+.|.+.||+|++|+++-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 578999999999999999999999999999999998632 1 157778888889999999999998765321
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+. -|+-.-+.|.||+|+|..
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCC
Confidence 11 133334668899999953
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0036 Score=62.49 Aligned_cols=98 Identities=18% Similarity=0.336 Sum_probs=68.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccC-CccC-----------C---------------------c----------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM-----------P---------------------R---------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~~-----------~---------------------~---------- 228 (461)
.|+|||+|+.|+-+|..|++.|.+|.++++. +... . .
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 4899999999999999999999999999886 2110 0 0
Q ss_pred ---c---cCH-HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC------C--cEEecCEEEEccCCCCCh
Q 012545 229 ---L---FTA-DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD------G--RTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 229 ---~---~~~-~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~------G--~~i~aD~vi~a~G~~p~~ 292 (461)
+ ++. .+-+.+.+.+.+.|++++.+ .++++..++++ ..+++.+ | .++.+|.||.|.|.+...
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 0 010 12234556667789999765 68888764333 3455442 2 479999999999976543
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0035 Score=63.09 Aligned_cols=99 Identities=25% Similarity=0.357 Sum_probs=68.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----------------cC-----------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------FT----------------------- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-----------------~~----------------------- 231 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.. +.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 58999999999999999999999999999875421100 00
Q ss_pred --------------------HHHHHHHHHHHHh-cC-cEEEcCCcEEEEEecCCCCEEEEEeCCC-----cEEecCEEEE
Q 012545 232 --------------------ADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVV 284 (461)
Q Consensus 232 --------------------~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G-----~~i~aD~vi~ 284 (461)
..+.+.+.+.+.+ .| +++++++++++++.++++.+ +.+.++ +++.+|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 0112223333333 36 46999999999987555533 334332 4899999999
Q ss_pred ccCCCCCh
Q 012545 285 GVGGRPLI 292 (461)
Q Consensus 285 a~G~~p~~ 292 (461)
|-|.+...
T Consensus 160 ADG~~S~v 167 (413)
T PRK07538 160 ADGIHSAV 167 (413)
T ss_pred CCCCCHHH
Confidence 99976544
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00076 Score=70.71 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------ccCHHHHHHHHHHHHhcCcEEEcCCcE-EEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVA-VGFT 259 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v-~~i~ 259 (461)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+... .++.+..+.-.+.+++.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 5789999999999999999999999999999987654211 134455555566778899999988765 3321
Q ss_pred ecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 260 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 260 ~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
. +. + ...+|.||+|+|..+.
T Consensus 216 ~--~~------~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 L--EQ------L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred H--HH------H----HhhCCEEEEeeCCCCC
Confidence 1 00 0 1247999999997653
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0049 Score=60.60 Aligned_cols=97 Identities=16% Similarity=0.283 Sum_probs=67.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--------CcccCH-------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTA------------------------------- 232 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------~~~~~~------------------------------- 232 (461)
.|+|||+|+.|+-+|..|++. .+|+++++.+... ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999998 9999999876321 000000
Q ss_pred ------------------HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe-CCCc--EEecCEEEEccCCCCC
Q 012545 233 ------------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 233 ------------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~G~--~i~aD~vi~a~G~~p~ 291 (461)
++.+.+.+ ..+.|++++.++.+++++.++++ ..+.+ .+|+ ++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 00111222 23468999999999999874444 34554 5664 6899999999998654
Q ss_pred h
Q 012545 292 I 292 (461)
Q Consensus 292 ~ 292 (461)
.
T Consensus 159 v 159 (351)
T PRK11445 159 V 159 (351)
T ss_pred H
Confidence 4
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00061 Score=64.89 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=73.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++.+|||+|..||..+.-..++|-. ||++|-.+...-. +.. +....+...+.+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~~--------mD~---------------Eisk~~qr~L~k 264 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGGV--------MDG---------------EISKAFQRVLQK 264 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhccc--------cCH---------------HHHHHHHHHHHh
Confidence 57899999999999999999999876 9999987642210 000 012345677888
Q ss_pred cCcEEEcCCeEEEEeCCCC-E--EEcC---CC--cEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK-T--LLSA---TG--LIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~--v~~~---~~--~~~~~d~liiAtG~~~~ 127 (461)
++++|.++++|...++... . +.+. ++ +++++|.+++++|.+|+
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 9999999999999987664 3 3332 22 47899999999999994
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00035 Score=73.81 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC-CCCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
+..+...+.+..++.|++++.+++|+++..++ ++.+..|+. .+++ ++.+|.||+|+|...
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 56778888899999999999999999998743 466666654 2343 689999999999653
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00037 Score=72.12 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||||||+| ||++||.++++.|.+ |+||||.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~---V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLS---VALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCc---EEEEecCCC
Confidence 6899999999 999999999999987 999999865
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0056 Score=64.01 Aligned_cols=100 Identities=24% Similarity=0.322 Sum_probs=69.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------------------------c--------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------L-------------- 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------------------~-------------- 229 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..... .
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 457999999999999999999999999999877431100 0
Q ss_pred ----------c--------------------------C-HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEe
Q 012545 230 ----------F--------------------------T-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL 271 (461)
Q Consensus 230 ----------~--------------------------~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~ 271 (461)
+ + ..+.+.+.+.+++ .|+++++++++++++.++++. .+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v--~v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGV--TATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeE--EEEE
Confidence 0 0 0012233344444 489999999999998744442 2333
Q ss_pred ---CCCc--EEecCEEEEccCCCCC
Q 012545 272 ---KDGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 272 ---~~G~--~i~aD~vi~a~G~~p~ 291 (461)
.+|+ ++.+|.||.|.|.+..
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchH
Confidence 3464 6899999999997543
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00055 Score=68.05 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||+|||||++|+.||..|+++|++ |+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc---EEEEecccc
Confidence 3899999999999999999999987 999998754
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0057 Score=61.06 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=70.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--Cc----ccC---------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----LFT--------------------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~~----~~~--------------------------------- 231 (461)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999876311 00 000
Q ss_pred --------------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCc--EEecCEEEEccCC
Q 012545 232 --------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEADIVVVGVGG 288 (461)
Q Consensus 232 --------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~--~i~aD~vi~a~G~ 288 (461)
..+.+.+.+.+.+.|+.++++.+++++...++.. ..|++. +|+ ++++|+||-|=|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 1112334455566788888888877775422222 356664 775 6899999999997
Q ss_pred CCCh
Q 012545 289 RPLI 292 (461)
Q Consensus 289 ~p~~ 292 (461)
+...
T Consensus 162 ~S~V 165 (390)
T TIGR02360 162 HGVS 165 (390)
T ss_pred chhh
Confidence 6644
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0098 Score=59.51 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=66.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC---cc---------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL--------------------------------------- 229 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~~--------------------------------------- 229 (461)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.... ..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 589999999999999999999999999987643110 00
Q ss_pred --------cC-HHHHHHHHHHHHhcCcEEEcCCcEEEEEec-CCCCEEEEEe--CC-----C--cEEecCEEEEccCCCC
Q 012545 230 --------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKL--KD-----G--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 --------~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~--~~-----G--~~i~aD~vi~a~G~~p 290 (461)
++ ..+-+.+.+.+.+.|++++.++ ++++... ..+....|++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 0112235556677899998774 6666431 1222233442 22 3 4799999999999876
Q ss_pred Ch
Q 012545 291 LI 292 (461)
Q Consensus 291 ~~ 292 (461)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 44
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00065 Score=65.62 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+.+|||||||++|+++|..|.++|++ |+|+|+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence 46899999999999999999999998 999999764
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00076 Score=69.18 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=33.9
Q ss_pred cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 247 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 247 V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.+++++++|++|..++++ +.|++.+|+++.||.||++++
T Consensus 245 ~~I~l~~~V~~I~~~~~g--V~V~~~~G~~~~a~~VIvtvP 283 (487)
T PLN02676 245 PRLKLNKVVREISYSKNG--VTVKTEDGSVYRAKYVIVSVS 283 (487)
T ss_pred CceecCCEeeEEEEcCCc--EEEEECCCCEEEeCEEEEccC
Confidence 679999999999985454 578889999999999999987
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0026 Score=58.05 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=69.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-------------------cCHHH------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------FTADI------------------ 234 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------------------~~~~~------------------ 234 (461)
+|+|||+|..|+.+|..|+..|.+|++++++..+..++ -++.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 58999999999999999999999999999874432210 01111
Q ss_pred ------------------------HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cEEecCEEEEccCCC
Q 012545 235 ------------------------AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGR 289 (461)
Q Consensus 235 ------------------------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~~ 289 (461)
...+.+.|.. ..+++++++|+++... +....+++++| +...+|.|++++..-
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt-dL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PAP 159 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT-DLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPAP 159 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHhc-cchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCCC
Confidence 1122233322 4678888999999874 34467888666 467899999998753
Q ss_pred CChhhh
Q 012545 290 PLISLF 295 (461)
Q Consensus 290 p~~~~~ 295 (461)
....++
T Consensus 160 Q~~~LL 165 (331)
T COG3380 160 QTATLL 165 (331)
T ss_pred cchhhc
Confidence 333333
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=57.12 Aligned_cols=120 Identities=22% Similarity=0.240 Sum_probs=79.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCcccccccCCCCCCCCCC-----------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPALSKAYLFPEGTARLPG----------- 65 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------- 65 (461)
+.+||+|||||||||+||..+++.|.+ |+|+|+.+... -.||.............++|+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHh
Confidence 478999999999999999999999987 99999987621 112222111111111111110
Q ss_pred --------------ceeecCC--CC----------CCCCHhHHHHcCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCE
Q 012545 66 --------------FHVCVGS--GG----------ERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQI 117 (461)
Q Consensus 66 --------------~~~~~~~--~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~ 117 (461)
....... .. ...+...+++.||+++++++|.+++.+. ..+.+.+++++.+|.
T Consensus 79 ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 79 FTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 0000000 00 1112334567899999999999998875 567888888899999
Q ss_pred EEEccCCCc
Q 012545 118 LVIATGSTV 126 (461)
Q Consensus 118 liiAtG~~~ 126 (461)
+|+|||...
T Consensus 159 lilAtGG~S 167 (408)
T COG2081 159 LILATGGKS 167 (408)
T ss_pred EEEecCCcC
Confidence 999999665
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0015 Score=70.76 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 57899999999999999999999999999999753
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0087 Score=62.46 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 469999999999999999999999999999864
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00068 Score=73.50 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=30.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~ 42 (461)
++|+|||||+||+++|..|++. |++ |+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCC
Confidence 3899999999999999999998 666 999999875
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00086 Score=70.03 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=32.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||||||+|.+|++||.++++.|.+ |+|||+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~---v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLE---PLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 68999999999999999999999987 999999864
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0016 Score=65.07 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=65.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC------------------------------------------c
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------R 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------~ 228 (461)
-.|+|||+|-.|+|+|.+.+++|.++.++.....-+. .
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 4699999999999999999999999888765422100 0
Q ss_pred cc-----------CHH-HHHHHHHHHH-hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 229 LF-----------TAD-IAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 229 ~~-----------~~~-~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.- |.. ..+.+++.++ ..++.++- ..|+++...++.++.+|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00 001 1223333333 24566653 356666653333689999999999999999999995
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0014 Score=63.40 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=51.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-cccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
.++|+|+|||++||++|+.|++++. +..|+|+|..+... |-+. .....+++...+..+.... ..-....+++
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag-----~~g~~~l~lv 84 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAG-----PGGAETLDLV 84 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCcccceeeeccCCCceeeccCCCccCcCC-----cchhHHHHHH
Confidence 5799999999999999999999875 56688899998753 3332 3345555555444432111 0011345666
Q ss_pred HHcCcE
Q 012545 83 KEKGIE 88 (461)
Q Consensus 83 ~~~~v~ 88 (461)
.+.|++
T Consensus 85 ~dLGl~ 90 (491)
T KOG1276|consen 85 SDLGLE 90 (491)
T ss_pred HHcCcc
Confidence 677764
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0047 Score=64.01 Aligned_cols=102 Identities=24% Similarity=0.412 Sum_probs=77.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEccCCcc------CCcccC-----HHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWC------MPRLFT-----ADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~------~~~~~~-----~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
..+++|||.|..|.-+...+.+. -..+|++...+++ ++..+. +++.-.-.++.+++||+++.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46799999999999888888773 4678888766553 111121 233333457889999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
..|.. +. ..|++++|.++.+|.+|+|||..|.....
T Consensus 83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCC
Confidence 99976 33 46889999999999999999999876544
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.001 Score=70.79 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..+||+|||||++|++||..|++.|++ |+|+|+.+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecCccC
Confidence 358999999999999999999999987 9999998753
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0012 Score=70.60 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=33.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
.++|+|||||++|++||..|.+.|++ |+|+|+....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~~r~ 273 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGRARP 273 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeccccC
Confidence 57999999999999999999999987 9999999764
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0024 Score=62.79 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=55.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------cCHH------HHHHHHHHHHhcCcEEEcCCcEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTAD------IAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------~~~~------~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
-.++++|||||..|+++|..|+..|.+|+++++.+.+..++ |+.. +.-.+.+....-+|++++.++|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ 202 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE 202 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence 46789999999999999999999999999999998865431 2221 12233444455689999999999
Q ss_pred EEEe
Q 012545 257 GFTT 260 (461)
Q Consensus 257 ~i~~ 260 (461)
++..
T Consensus 203 ev~G 206 (622)
T COG1148 203 EVSG 206 (622)
T ss_pred eecc
Confidence 9865
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0087 Score=56.48 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=79.1
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc-cCC-cc-----------CCcccCHHHHHHHHHHHHhcCcEEEcCCc
Q 012545 188 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVY-PEP-WC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTV 254 (461)
Q Consensus 188 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~-~~~-~~-----------~~~~~~~~~~~~~~~~l~~~GV~v~~~~~ 254 (461)
+.+-.|+|||+|+.|...|-..++.|.+.-++. |-. .. .+..-.+++...+++..++..|.++...+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qr 288 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQR 288 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhh
Confidence 356689999999999999999888887654431 110 11 11224678899999999999999998888
Q ss_pred EEEEEec-CCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 255 AVGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 255 v~~i~~~-~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.+++++. ..+....|++.+|-.+++..+|++||.+
T Consensus 289 a~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 289 ASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 8888863 2355678999999999999999999954
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.014 Score=59.81 Aligned_cols=97 Identities=27% Similarity=0.372 Sum_probs=67.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--------------c----------------ccC---------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------R----------------LFT--------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--------------~----------------~~~--------- 231 (461)
..|+|||+|..|+-+|..+++.|.+|.++++.+.... . ..+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3689999999999999999999999999887532100 0 000
Q ss_pred --------------------------------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC
Q 012545 232 --------------------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 273 (461)
Q Consensus 232 --------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~ 273 (461)
..+.+.+.+.+++.||+++.+ .++.+.. +++++..+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 123334455556677887765 6777765 3566666665 5
Q ss_pred CcEEecCEEEEccCCCC
Q 012545 274 GRTLEADIVVVGVGGRP 290 (461)
Q Consensus 274 G~~i~aD~vi~a~G~~p 290 (461)
+..+.++.||+|+|...
T Consensus 159 g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 159 GELLKFDATVIATGGFS 175 (466)
T ss_pred CEEEEeCeEEECCCcCc
Confidence 66899999999999644
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.019 Score=60.13 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
.+.+.+.+++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|+|...
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3455555677899999999999998743677777653 3564 478999999999653
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0015 Score=67.33 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=41.7
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCC--CCEEEEEeC---CCc--EEecCEEEEccCCCCChhhh
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNAD--GEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~--g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~~~~~ 295 (461)
.+.+.++..+++++.++.|++|..+++ +++..|... +|+ ++.|+.||+|.|..-+..++
T Consensus 219 ~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 219 QPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred hhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 333344455699999999999987544 356666443 343 58999999999977666655
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0017 Score=62.04 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
...||+|||||.+|-+.|..|+|.|.+ |.|||++-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRR---VHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcE---EEEEeccc
Confidence 358999999999999999999999987 99999984
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.027 Score=57.16 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=67.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC---cc----------cC-------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL----------FT------------------------- 231 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~~----------~~------------------------- 231 (461)
.-.|+|||+|+.|.-+|..|++.|.+|.++++.+.... .. ++
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 34799999999999999999999999999987642100 00 00
Q ss_pred ------------H-HHHHHHHHHHHhcCcEEEcCCcEEEEEecCC-CCEEEEEeCC-------C--cEEecCEEEEccCC
Q 012545 232 ------------A-DIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKD-------G--RTLEADIVVVGVGG 288 (461)
Q Consensus 232 ------------~-~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~-------G--~~i~aD~vi~a~G~ 288 (461)
. .+-+.+.+...+.|++++.+ .++++....+ +....|++.+ | .++.+|.||-|.|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 0 11234555567789999765 5777764211 1222344422 3 47999999999997
Q ss_pred CCCh
Q 012545 289 RPLI 292 (461)
Q Consensus 289 ~p~~ 292 (461)
....
T Consensus 198 ~S~v 201 (450)
T PLN00093 198 NSRV 201 (450)
T ss_pred chHH
Confidence 6543
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.021 Score=59.00 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=67.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
..+|+|||+|..|+-+|..|++.|.+|+++++.+..-..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 457999999999999999999999999999986321000
Q ss_pred ----cc-----------------CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEe--CCCcE--EecCEE
Q 012545 229 ----LF-----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL--KDGRT--LEADIV 282 (461)
Q Consensus 229 ----~~-----------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G~~--i~aD~v 282 (461)
.+ ..++.+.+.+.+++. ||+++.+ +++++.. +++.+.+|++ .+|++ +.+|.|
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV 200 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-EKGVIKGVTYKNSAGEETTALAPLT 200 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence 00 012233444444444 6888755 5666654 3444445554 46654 569999
Q ss_pred EEccCCCCChh
Q 012545 283 VVGVGGRPLIS 293 (461)
Q Consensus 283 i~a~G~~p~~~ 293 (461)
|.|-|......
T Consensus 201 VgADG~~S~vR 211 (514)
T PLN02985 201 VVCDGCYSNLR 211 (514)
T ss_pred EECCCCchHHH
Confidence 99999876553
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.025 Score=59.47 Aligned_cols=50 Identities=26% Similarity=0.384 Sum_probs=37.6
Q ss_pred HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 239 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
.+.+++.||+++.++.++++.. +++++.++.. .+|+ .+.++.||+|+|..
T Consensus 136 ~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 136 YEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 3445567899999999999986 3677766654 4564 58999999999954
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.026 Score=58.37 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
-.|+|||||.+|+-+|..++++|.+|.++++.+.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4699999999999999999999999999998743
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0022 Score=59.85 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
++|++|||+|.+|+..|..|+++|.+ |.|+||.+..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR~HI 36 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKRNHI 36 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCE---EEEEeccccC
Confidence 47999999999999999999999987 9999999764
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.03 Score=59.15 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
+..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 56789999999999999999999999999999865
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.025 Score=58.95 Aligned_cols=98 Identities=27% Similarity=0.351 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC---------------c---------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------R--------------------------- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---------------~--------------------------- 228 (461)
-.|+|||+|..|+-+|..+++.|.+|+++++.+.... .
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4699999999999999999999999999887543210 0
Q ss_pred ---------------cc-----------------------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCC
Q 012545 229 ---------------LF-----------------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 264 (461)
Q Consensus 229 ---------------~~-----------------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g 264 (461)
.| ...+.+.+.+.+++.||+++.++.++++..++++
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 00 0123334455566778889889999998764456
Q ss_pred CEEEEEeC-------CC-cEEecCEEEEccCC
Q 012545 265 EVKEVKLK-------DG-RTLEADIVVVGVGG 288 (461)
Q Consensus 265 ~~~~v~~~-------~G-~~i~aD~vi~a~G~ 288 (461)
++.++... ++ ..+.++.||+|+|.
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 77776553 23 36899999999995
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0016 Score=67.56 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC---c-EEecCEEEEccCCCCChhhh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG---R-TLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G---~-~i~aD~vi~a~G~~p~~~~~ 295 (461)
..+...++..++++.+++.++.+.. +.++...++.. ++ + ...++.||++.|...+..++
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~-~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILL-EGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEE-ECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 3444567777899999999999998 45555555553 33 1 25789999999987776665
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.018 Score=57.14 Aligned_cols=102 Identities=23% Similarity=0.306 Sum_probs=64.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC---CcEEEEccCCccCCc--------------------cc----CHHHHHH------
Q 012545 191 GKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPR--------------------LF----TADIAAF------ 237 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~~~--------------------~~----~~~~~~~------ 237 (461)
.+|+|||+|++|+.+|..|.+.- ..++++++.+.+..+ .+ +.+..++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998752 238888776553211 00 1122222
Q ss_pred ----------------------------HHHHHHhcC---cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 238 ----------------------------YEGYYANKG---IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 238 ----------------------------~~~~l~~~G---V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
+...+++.- +.++ .++.+++...+++....+...+|.+..||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 222222222 3333 34455555544566677888999999999999999
Q ss_pred CCCCChh
Q 012545 287 GGRPLIS 293 (461)
Q Consensus 287 G~~p~~~ 293 (461)
|..+...
T Consensus 161 gh~~~~~ 167 (474)
T COG4529 161 GHSAPPA 167 (474)
T ss_pred cCCCCCc
Confidence 9766543
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.031 Score=59.25 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.-.|+|||||.+|+-+|..|+.+|.+|.++++.+
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 3579999999999999999999999999999874
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.034 Score=58.83 Aligned_cols=97 Identities=13% Similarity=0.214 Sum_probs=67.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCcc-----------c---------------------CH----
Q 012545 191 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL-----------F---------------------TA---- 232 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~~-----------~---------------------~~---- 232 (461)
-.|+|||+|..|+-+|..+++. |.+|.++++.+...... + ++
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~ 91 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY 91 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 3699999999999999999998 99999998764210000 0 00
Q ss_pred -----------------------------------------HHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEE
Q 012545 233 -----------------------------------------DIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVK 270 (461)
Q Consensus 233 -----------------------------------------~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~ 270 (461)
.+...+.+.+++.| |+++.++.+.++.. +++++.++.
T Consensus 92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~ 170 (608)
T PRK06854 92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAV 170 (608)
T ss_pred HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEE
Confidence 11122334455555 99999999999875 356666653
Q ss_pred ---eCCCc--EEecCEEEEccCC
Q 012545 271 ---LKDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 271 ---~~~G~--~i~aD~vi~a~G~ 288 (461)
..+|+ .+.++.||+|+|-
T Consensus 171 ~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred EEEccCCcEEEEECCEEEECCCc
Confidence 24554 6899999999994
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.04 Score=56.99 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 469999999999999999999999999999873
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.035 Score=58.98 Aligned_cols=101 Identities=25% Similarity=0.353 Sum_probs=69.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccCCccCCc----------------------------------ccC---
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPR----------------------------------LFT--- 231 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~~----------------------------------~~~--- 231 (461)
.-.|+|||+|+.|+-+|..|+++ |.+|+++++.+..... .+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 35799999999999999999995 9999999877432110 000
Q ss_pred -----------------------------HHHHHHHHHHHHhcC--cEEEcCCcEEEEEecCCC-CEEEEEeC------C
Q 012545 232 -----------------------------ADIAAFYEGYYANKG--IKIIKGTVAVGFTTNADG-EVKEVKLK------D 273 (461)
Q Consensus 232 -----------------------------~~~~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~g-~~~~v~~~------~ 273 (461)
..+.+.+.+.+++.| +++..++++++++.++++ ..+.+++. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 012334555566665 577889999999864322 22345553 3
Q ss_pred C--cEEecCEEEEccCCCC
Q 012545 274 G--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 274 G--~~i~aD~vi~a~G~~p 290 (461)
| +++.||+||-|=|.+.
T Consensus 192 g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARS 210 (634)
T ss_pred CceEEEEeCEEEECCCCch
Confidence 5 5799999999988643
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.046 Score=58.12 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=37.5
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCC
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 288 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~ 288 (461)
+.+++.||+++.++.++++.. +++++.+|... +|+ .+.|+.||+|||-
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 345677899999999999886 35777777764 453 5899999999996
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.017 Score=58.86 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|..+.++++|||+|..|+.+|..|++.|++ |+++|++.
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 434568999999999999999999999987 99999874
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.044 Score=56.44 Aligned_cols=56 Identities=29% Similarity=0.305 Sum_probs=40.1
Q ss_pred HHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC-C--cEEecCEEEEccCCCCC
Q 012545 235 AAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVVGVGGRPL 291 (461)
Q Consensus 235 ~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G--~~i~aD~vi~a~G~~p~ 291 (461)
.+.+.+.+++ .||+++.++.++++.. +++.+.++...+ + ..+.++.||+|+|....
T Consensus 131 ~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 131 ITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 3445555565 6899999999999986 356666665543 3 36899999999996543
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.05 Score=57.06 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=38.2
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 288 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~ 288 (461)
.+.+.+++.||+++.++.++++.. ++|++.++... +|+ .+.++.||+|||-
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 344445567899999999999887 46888887653 332 5789999999994
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.019 Score=58.59 Aligned_cols=82 Identities=24% Similarity=0.194 Sum_probs=59.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
..++++|+|+|.+|..+|..|.+.|.+|+++++... ..+ +...+.+.+.|++++.+....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence 468999999999999999999999999999877431 222 2233456777887665433210
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
..-.+|.||.++|..|+.+.+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 012579999999998887755
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0035 Score=65.34 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-c---EEecCEEEEccCCCCChhhh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R---TLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~---~i~aD~vi~a~G~~p~~~~~ 295 (461)
.++...+++.|++++.++.|++|.. +++++.+|++.++ . .+.++.||+|.|.--...++
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 3444444567899999999999997 3667788877543 2 35899999999964444433
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0054 Score=65.98 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=33.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..+|+|||||++|+.||..|.+.|++ |+|+|+.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~~ri 219 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGRKRP 219 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEccCcC
Confidence 58999999999999999999999987 9999998763
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.056 Score=56.47 Aligned_cols=53 Identities=21% Similarity=0.388 Sum_probs=38.3
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
.+.+.+++.||++++++.++++..++++++.++.. .+|+ .+.|+.||+|||--
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 34445566789999999999987644444666653 4564 58899999999964
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0058 Score=64.05 Aligned_cols=35 Identities=17% Similarity=0.542 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..||+||||||.||+.+|.+|.+ +.+ |+|||+++.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence 36999999999999999999999 455 999999963
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0096 Score=43.07 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=29.5
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEccCCccCC
Q 012545 195 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 227 (461)
Q Consensus 195 VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~ 227 (461)
|||+|.+|+-+|..|++.|.+|+++++.+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999987644
|
... |
| >PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.043 Score=43.84 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=20.6
Q ss_pred HHHHHhcccCCCcccCCCCCCeEEEecC-CcceEEccCC
Q 012545 352 AVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDN 389 (461)
Q Consensus 352 aa~~i~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~g~~ 389 (461)
|++||.+.. .+|.++|+||+... ++.+..+|..
T Consensus 1 AG~NM~ga~-----~py~hq~~fwSdlgp~vgyeAvG~~ 34 (133)
T PF14721_consen 1 AGENMTGAN-----KPYWHQSMFWSDLGPDVGYEAVGIV 34 (133)
T ss_dssp HHHHHTTT--------S-S--EEEEESSTTEEEEEEES-
T ss_pred CCccccCCC-----CcccccchhHhhcCCCcCeEEeeec
Confidence 567888764 78999999999984 7777777743
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.022 Score=56.04 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.-.|+|||||-.|+|.|.+.++.|.+.+++..+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 347999999999999999999999998887654
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.025 Score=54.95 Aligned_cols=35 Identities=37% Similarity=0.540 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
..+|+|+|||..|+-.|..|.+.|.+|.+++....
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 35799999999999999999999999999987644
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.092 Score=55.25 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=38.8
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE---eCCCc--EEecCEEEEccCCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~--~i~aD~vi~a~G~~ 289 (461)
.+.+.+++.||+++.++.++++.. +++++.++. ..+|+ .+.|+.||+|+|..
T Consensus 140 ~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 140 ELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 345556677899999999999876 366666654 24564 58999999999964
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0088 Score=67.03 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
.+||+|||||++|+++|..|.+.|++ |+|+|+.+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeeccCC
Confidence 58999999999999999999999986 9999998653
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.13 Score=54.29 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
-.|+|||+|..|+-+|..+++.|.+|+++++.
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 46999999999999999999999999998875
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.13 Score=54.69 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 369999999999999999999999999987753
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.086 Score=55.06 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999865
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.14 Score=53.92 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CcEEEEccCC
Q 012545 192 KAVVVGGGYIGLELSAALKINN---IDVSMVYPEP 223 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g---~~Vtli~~~~ 223 (461)
.|+|||+|..|+-+|..+++.| .+|+++++.+
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 5999999999999999999988 7999988653
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.039 Score=60.02 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~ 224 (461)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998875
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=51.07 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCcEEEEccCCccCCc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cEEecC
Q 012545 203 LELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEAD 280 (461)
Q Consensus 203 ~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~i~aD 280 (461)
-++...+.+.|.... .++..++.|. .-..++.+.+.+.+++.||+++++++|++|.. ++ ..+.+.++ ..+.||
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~a~ 131 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GT--LRFETPDGQSTIEAD 131 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--Cc--EEEEECCCceEEecC
Confidence 466778888887633 4556666663 24668889999999999999999999999932 32 45666543 469999
Q ss_pred EEEEccCCCC
Q 012545 281 IVVVGVGGRP 290 (461)
Q Consensus 281 ~vi~a~G~~p 290 (461)
.||+|+|-.+
T Consensus 132 ~vIlAtGG~s 141 (376)
T TIGR03862 132 AVVLALGGAS 141 (376)
T ss_pred EEEEcCCCcc
Confidence 9999999754
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.099 Score=54.61 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=34.5
Q ss_pred HHHHHh-cCcEEEcCCcEEEEEecC-CCCEEEEEe-CCCc--EEecCEEEEccCC
Q 012545 239 EGYYAN-KGIKIIKGTVAVGFTTNA-DGEVKEVKL-KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 239 ~~~l~~-~GV~v~~~~~v~~i~~~~-~g~~~~v~~-~~G~--~i~aD~vi~a~G~ 288 (461)
.+.+++ .||+++.++.++++..++ ++++.++.. .+|. .+.++.||+|||-
T Consensus 141 ~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 141 TEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 333433 378888888888887643 367777654 3454 3789999999996
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.24 Score=51.85 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 368999999999999999999999999988765
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.014 Score=54.93 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCC-CcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKP-GELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~-~~V~vie~~~~~ 43 (461)
..||+|||||-.|.+.|..|.++-.+. .+|+|+|++...
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 579999999999999999998762221 459999999653
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.0041 Score=54.49 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..||||+|+|.+||+||+.+.++. ++.+|++||..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccC-CCceEEEEEeee
Confidence 359999999999999999999764 567799999874
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.13 Score=53.25 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=32.0
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEeCC--Cc--EEecCEEEEccCCCC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKD--GR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--G~--~i~aD~vi~a~G~~p 290 (461)
.||+++.++.++++.. +++++.++...+ |+ .+.++.||+|+|...
T Consensus 142 ~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 142 PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 4677777777777765 356666666543 33 688999999999644
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.093 Score=44.51 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=54.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC
Q 012545 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 272 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~ 272 (461)
|+|+|+|.+|.-+|..|++.|.+|+++.|.+ ..+.+++.|+.+.....-..+.. .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~--------------~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP--------------RLEAIKEQGLTITGPDGDETVQP-------PIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH--------------HHHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc--------------cHHhhhheeEEEEecccceeccc-------ccccC
Confidence 6899999999999999999999999987632 12347788998876652111111 11222
Q ss_pred CC--cEEecCEEEEccCCCCChhhhh
Q 012545 273 DG--RTLEADIVVVGVGGRPLISLFK 296 (461)
Q Consensus 273 ~G--~~i~aD~vi~a~G~~p~~~~~~ 296 (461)
+. ..-++|.||+|+=.....+.++
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~ 85 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQ 85 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHH
Confidence 21 2346899999986655555443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.23 Score=53.00 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=36.5
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCC
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~ 288 (461)
+.+++.||+++.++.++++.. +++++.++.. .+|+ .+.|+.||+|||-
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 445667899999999999986 4677766654 3564 4679999999993
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.044 Score=53.43 Aligned_cols=102 Identities=22% Similarity=0.360 Sum_probs=59.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCcc--CCccc------------------C-------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC--MPRLF------------------T------------------- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~--~~~~~------------------~------------------- 231 (461)
.++.||.|+.++-+|..|...+ .++.++++.+.+ -+.++ +
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 4789999999999999998876 788888877642 11110 0
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCC--CEEEEEeC----CCcEEecCEEEEccCCCCChh
Q 012545 232 -----------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EVKEVKLK----DGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 232 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g--~~~~v~~~----~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.+..+++.-..++..-.+..+++|++|+...++ ....|.+. +++++.|+.||+++|..|..+
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 022233333333444448889999999874433 34567762 346899999999999888765
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.022 Score=58.50 Aligned_cols=38 Identities=16% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..||.||||||.||...|..|.+. +..+|+|+|++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn--~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSEN--PNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccC--CCceEEEEecCCCC
Confidence 469999999999999999999985 34569999999865
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.2 Score=52.74 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=27.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||+|..|+-+|..+++.| +|.++++.+
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~ 61 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDE 61 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence 46999999999999999999988 888887654
|
|
| >TIGR02352 thiamin_ThiO glycine oxidase ThiO | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.08 Score=51.41 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+...+.+.+++.|++++.+++|+++.. .++.+..|.+.+| ++.||.||+|+|...
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 677888888999999999999999999987 3555667787777 899999999999543
|
This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.032 Score=55.41 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
++|+|||+|..|+++|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.067 Score=48.07 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++|+|||||.+|..-+..|.+.|.+|+++.+... ..+.+..++..++++...--.+...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~-----------~~l~~l~~~~~i~~~~~~~~~~dl~-------- 68 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE-----------SELTLLAEQGGITWLARCFDADILE-------- 68 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC-----------HHHHHHHHcCCEEEEeCCCCHHHhC--------
Q ss_pred EEeCCCcEEecCEEEEccCCC-CChhhh
Q 012545 269 VKLKDGRTLEADIVVVGVGGR-PLISLF 295 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~-p~~~~~ 295 (461)
.+++||.|||-. .|..+.
T Consensus 69 ---------~~~lVi~at~d~~ln~~i~ 87 (205)
T TIGR01470 69 ---------GAFLVIAATDDEELNRRVA 87 (205)
T ss_pred ---------CcEEEEECCCCHHHHHHHH
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.039 Score=51.18 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc----CCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~----g~~~~~V~vie~~~ 41 (461)
+.++++|||+|..|++.|..+.+. ..+.++|++++...
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 367999999999999999888874 44567899998775
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.045 Score=46.91 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=30.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
+.++|+|||||..|..-+..|.+.|.+ |+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~---V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAF---VTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEcCc
Confidence 468999999999999999999998876 9999755
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.039 Score=45.99 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.4
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccC
Q 012545 188 KKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPE 222 (461)
Q Consensus 188 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~ 222 (461)
..+++++|+|+|-.|-.++..|...|.+ |+++.|.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3689999999999999999999999977 9998873
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.37 Score=50.74 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=32.7
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEE---eCCCc--EEecCEEEEccCCCC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~--~i~aD~vi~a~G~~p 290 (461)
.+|+++.++.++++.. +++++.++. +.+|+ .+.++.||+|+|...
T Consensus 147 ~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 147 PQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred CCcEEEeCeEEEEEEE-eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 3688888888888876 356666654 34663 688999999999533
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.4 Score=50.48 Aligned_cols=44 Identities=30% Similarity=0.375 Sum_probs=32.6
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
.||+++.++.++++.. +++++.++.. .+|+ .+.++.||+|+|..
T Consensus 146 ~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 146 PQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred CCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 4688888888888876 3677766543 4663 68899999999953
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.24 Score=51.30 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=36.0
Q ss_pred HHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCC-Cc--EEecCEEEEccCCC
Q 012545 237 FYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEADIVVVGVGGR 289 (461)
Q Consensus 237 ~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G~--~i~aD~vi~a~G~~ 289 (461)
.+.+.+++. ||+++.++.++++.. +++++.++...+ +. .+.++.||+|+|--
T Consensus 141 ~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 141 ALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 334444443 788888888888765 356777766543 32 58999999999963
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 461 | ||||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 1e-30 | ||
| 3fg2_P | 404 | Crystal Structure Of Ferredoxin Reductase For The C | 3e-30 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 9e-23 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 1e-22 | ||
| 2gr3_A | 408 | Crystal Structure Of Ferredoxin Reductase, Bpha4 (O | 4e-20 | ||
| 1d7y_A | 408 | Crystal Structure Of Nadh-Dependent Ferredoxin Redu | 5e-20 | ||
| 3ef6_A | 410 | Crystal Structure Of Toluene 2,3-Dioxygenase Reduct | 7e-17 | ||
| 3gd3_A | 535 | Crystal Structure Of A Naturally Folded Murine Apop | 1e-12 | ||
| 1gv4_A | 528 | Murine Apoptosis-Inducing Factor (Aif) Length = 528 | 1e-12 | ||
| 3gd4_A | 511 | Crystal Structure Of The Reduced, Nad-Bound Form Of | 1e-12 | ||
| 4fdc_B | 514 | Crystal Structure Of The E493v Mutant Of Human Apop | 6e-12 | ||
| 1m6i_A | 493 | Crystal Structure Of Apoptosis Inducing Factor (Aif | 7e-12 | ||
| 2cdu_A | 452 | The Crystal Structure Of Water-Forming Nad(P)h Oxid | 2e-10 | ||
| 2qae_A | 468 | Crystal Structure Analysis Of Trypanosoma Cruzi Lip | 5e-10 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 5e-08 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 5e-08 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 6e-08 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 6e-08 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 6e-08 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 6e-08 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 9e-08 | ||
| 1lvl_A | 458 | The Refined Structure Of Pseudomonas Putida Lipoami | 4e-07 | ||
| 3klj_A | 385 | Crystal Structure Of Nadh:rubredoxin Oxidoreductase | 6e-07 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 1e-06 | ||
| 2v3a_A | 384 | Crystal Structure Of Rubredoxin Reductase From Pseu | 3e-06 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 3e-06 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 4e-06 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 5e-06 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 5e-06 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 5e-06 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 8e-06 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 2e-05 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 2e-05 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 2e-05 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 2e-05 | ||
| 3ntd_A | 565 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 2e-05 | ||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 5e-05 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 5e-05 | ||
| 1lpf_A | 477 | Three-Dimensional Structure Of Lipoamide Dehydrogen | 2e-04 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 2e-04 | ||
| 1jeh_A | 478 | Crystal Structure Of Yeast E3, Lipoamide Dehydrogen | 4e-04 | ||
| 3urh_A | 491 | Crystal Structure Of A Dihydrolipoamide Dehydrogena | 5e-04 | ||
| 3lad_A | 476 | Refined Crystal Structure Of Lipoamide Dehydrogenas | 5e-04 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-04 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-04 |
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408 | Back alignment and structure |
|
| >pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408 | Back alignment and structure |
|
| >pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410 | Back alignment and structure |
|
| >pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535 | Back alignment and structure |
|
| >pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528 | Back alignment and structure |
|
| >pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511 | Back alignment and structure |
|
| >pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514 | Back alignment and structure |
|
| >pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493 | Back alignment and structure |
|
| >pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452 | Back alignment and structure |
|
| >pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458 | Back alignment and structure |
|
| >pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565 | Back alignment and structure |
|
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478 | Back alignment and structure |
|
| >pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491 | Back alignment and structure |
|
| >pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 461 | |||
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 1e-106 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 1e-91 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 1e-90 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 2e-90 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 1e-89 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 2e-89 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 8e-59 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 2e-58 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 1e-50 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 3e-50 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 4e-50 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 1e-48 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 3e-48 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 4e-46 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 3e-45 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 2e-44 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 2e-44 | |
| 1yqz_A | 438 | Coenzyme A disulfide reductase; oxidoreductase; HE | 2e-43 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 6e-43 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 1e-21 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 2e-21 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 3e-21 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 6e-21 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 1e-20 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 4e-20 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 5e-20 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 1e-19 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 1e-19 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 2e-19 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 2e-19 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 1e-18 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 4e-18 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 3e-17 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 6e-17 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 6e-17 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 1e-16 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 4e-16 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 6e-16 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 1e-15 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 2e-15 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 2e-15 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 5e-15 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 7e-15 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 8e-15 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 8e-15 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 1e-14 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 1e-14 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 2e-14 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 2e-14 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 3e-14 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 1e-05 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 7e-14 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 1e-13 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 7e-13 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 2e-10 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 2e-09 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 2e-09 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 3e-08 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 4e-08 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 6e-08 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 2e-07 | |
| 1fcd_A | 401 | Flavocytochrome C sulfide dehydrogenase (flavin- b | 4e-07 | |
| 1fcd_A | 401 | Flavocytochrome C sulfide dehydrogenase (flavin- b | 3e-04 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 8e-07 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 8e-07 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 1e-06 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 1e-05 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 3e-05 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 7e-05 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 5e-04 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 6e-04 |
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 324 bits (833), Expect = e-106
Identities = 102/478 (21%), Positives = 177/478 (37%), Gaps = 61/478 (12%)
Query: 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
A ++++GGG +A AAR + + I+S++ PY RP LSK F +
Sbjct: 8 APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPN 66
Query: 62 RLPGFHVCVGSGGERLL----PEWY---------KEKGIELILSTEIVRADIASKTLLSA 108
+G ER + P +Y + G+ ++ ++V+ D+ +
Sbjct: 67 VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 126
Query: 109 TGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAK- 167
G Y+ +IATG T R+L GA+ K
Sbjct: 127 DGSQITYEKCLIATGGTP-------------------RSLSA--------IDRAGAEVKS 159
Query: 168 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEP 223
R+I D L + + K ++GGG++G EL+ AL +V ++PE
Sbjct: 160 RTTLFRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQLFPEK 217
Query: 224 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283
M ++ ++ + +G+K++ + +KLKDGR +E D +V
Sbjct: 218 GNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVG--VSSGKLLIKLKDGRKVETDHIV 275
Query: 284 VGVGGRPLISLFKG---QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVE 340
VG P + L K ++ + GG + + +++ GD A F RRVE
Sbjct: 276 AAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGR-RRVE 333
Query: 341 HVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDN 399
H DHA S A + + G Y + F+S D+ ++ G G
Sbjct: 334 HHDHAVVSGRLAGENMT----GAAKP-YWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVF 388
Query: 400 DLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSF 457
A+A + + G + E+ + I P +G+ F
Sbjct: 389 AKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIF 446
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 282 bits (725), Expect = 1e-91
Identities = 102/414 (24%), Positives = 173/414 (41%), Gaps = 60/414 (14%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
V+LG G+++ E + G + G + ++ EA PY+RP LSK ++
Sbjct: 11 VVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFM------------- 56
Query: 69 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSI 128
E++ + + +E +L D + T+ + G Y LV+ATG+
Sbjct: 57 -AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP-- 113
Query: 129 TSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 188
R LP + LR ++DA ++ ++ +
Sbjct: 114 -----------------RALP-----------TLQGATMPVHTLRTLEDARRIQAGLRPQ 145
Query: 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 248
+ ++VGGG IGLEL+A + + VS+V +P M R A +A F Y+A +G+
Sbjct: 146 S--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVD 203
Query: 249 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIET 308
+ G V L DG + AD+VVVG+G +L + GI
Sbjct: 204 LRFERSVTGSVDGV------VLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFV 257
Query: 309 DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGY 368
D + +T+ DVYA+GDV L R+E +A+ + ++ T GY
Sbjct: 258 DAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV----DPTAPGY 313
Query: 369 DYLPYFYSRAFDLSWQFYGDNVG-DTVLFGDNDLASATHKFGTYWIKDGKVVGV 421
LP+++S L Q G G + ++ G+ L + KF ++ G++VG
Sbjct: 314 AELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDA--PKFTLIELQKGRIVGA 365
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 1e-90
Identities = 106/420 (25%), Positives = 179/420 (42%), Gaps = 58/420 (13%)
Query: 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
VI+G G++ A G + G + ++ V P+ P LSKAYL + TA
Sbjct: 7 VVIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATA------ 59
Query: 68 VCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124
E L P+ Y + I+L+ T++ + + ++ + G Y LV+ATG
Sbjct: 60 -------ESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGG 112
Query: 125 TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEA 184
R LP+ A N YLR ++DA+ +
Sbjct: 113 RP-------------------RPLPVA--------SGAVGKANNFRYLRTLEDAECIRRQ 145
Query: 185 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 244
+ A VV+GGGYIGLE++A N+ V+++ + R+ ++AFYE +
Sbjct: 146 LIADNR--LVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHRE 203
Query: 245 KGIKIIKGTVAVGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 303
G+ I GT GF + +V V +DG L AD+V+ G+G P L +
Sbjct: 204 AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD 263
Query: 304 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363
GI ++ +TS + AVGD A F +LY R+E V +A + A + +
Sbjct: 264 NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV--- 320
Query: 364 TVTGYDYLPYFYSRAFDLSWQFYGDNVGD--TVLFGDNDLASATHKFGTYWIKDGKVVGV 421
+ P+F+S +++ + G + G ++ G A F ++++ +V+ V
Sbjct: 321 --PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGS----LAQPDFSVFYLQGDRVLAV 374
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 2e-90
Identities = 94/417 (22%), Positives = 167/417 (40%), Gaps = 62/417 (14%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
I+G GV A+ +G + G +++I E PY+RP+LSKA L
Sbjct: 6 AIIGNGVGGFTTAQALRAEGFE-GRISLIGDEPHLPYDRPSLSKAVLDGSLER------- 57
Query: 69 CVGSGGERLL--PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126
+L +WY E I+++ E+ D+ ++T+ G +VIATGS
Sbjct: 58 ------PPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA 111
Query: 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK 186
RT+ + G+ + LR D L ++
Sbjct: 112 -------------------RTMA-----------LPGSQLPGVVTLRTYGDVQVLRDSWT 141
Query: 187 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 246
+ + ++VGGG IG E++ + + V+++ + R+ I A+ G G
Sbjct: 142 SAT--RLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELG 199
Query: 247 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGI 306
+++ GT VGF+ +G++++V DGR+ AD ++ VG P L + G+
Sbjct: 200 VQVELGTGVVGFS--GEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACDRGV 257
Query: 307 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 366
D T A V+AVGDVA++P++ +E +A++ A I+
Sbjct: 258 IVDHCGATLAKGVFAVGDVASWPLRAGGRR-SLETYMNAQRQAAAVAAAILGKN-----V 311
Query: 367 GYDYLPYFYSRAFDLSWQFYGDNVGD--TVLFGDNDLASATHKFGTYWIKDGKVVGV 421
LP ++ Q GD G V G + + +++ ++ V
Sbjct: 312 SAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGM----PGSGAALLFRLQERRIQAV 364
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 277 bits (712), Expect = 1e-89
Identities = 123/427 (28%), Positives = 190/427 (44%), Gaps = 61/427 (14%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
+ + VI+G G AA + G + G + +I +E PYERP LSK YL E T
Sbjct: 5 VQAERADVVIVGAGHGGAQAAIALRQNGFE-GRVLVIGREPEIPYERPPLSKEYLAREKT 63
Query: 61 ARLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 117
ER+ +++++K +E+ L E+V D A+ T+ G +Y
Sbjct: 64 F-------------ERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGK 110
Query: 118 LVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDD 177
L+ ATG R L GAD + +R +D
Sbjct: 111 LIWATGGDP-------------------RRLS-----------CVGADLAGVHAVRTKED 140
Query: 178 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 237
AD+L+ + A AVV+GGGYIGLE +A L ++V+++ P + R+ ++ F
Sbjct: 141 ADRLMAELDAGAK-NAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199
Query: 238 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 297
Y+ + G+ + G + +V V+++DG + ADIV+VG+G P +
Sbjct: 200 YQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 298 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDHARKSAEQAVKTI 356
A G++ D+F +TS DVYA+GD A + R+E V +A A A K I
Sbjct: 259 AGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDI 318
Query: 357 MATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIK 414
Y P+F+S +DL Q G + G + VL GD AT F ++K
Sbjct: 319 CGAP-----VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGD----PATRSFSVVYLK 369
Query: 415 DGKVVGV 421
GKVV +
Sbjct: 370 GGKVVAL 376
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 2e-89
Identities = 116/418 (27%), Positives = 178/418 (42%), Gaps = 62/418 (14%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
+I G G + A + G +A+I+ E PY+RP LSKAYL G
Sbjct: 5 LIAGAGHAGFQVAVSLRQAKYP-GRIALINDEKHLPYQRPPLSKAYLKSGGDP------- 56
Query: 69 CVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST 125
L+ ++++++ IEL +S +V D + LL A+G +Y LV+ATG+
Sbjct: 57 ------NSLMFRPEKFFQDQAIEL-ISDRMVSIDREGRKLLLASGTAIEYGHLVLATGAR 109
Query: 126 VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI 185
R L V A ++ YLR +D+++ L + +
Sbjct: 110 N-------------------RMLD-----------VPNASLPDVLYLRTLDESEVLRQRM 139
Query: 186 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 245
KK+ VV+G G+IGLE +A + ++V +V P M R+ T +I++++ ++
Sbjct: 140 PDKKH--VVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGA 197
Query: 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG 305
GI++ G A V V L DG TL D+VVVGVG P + + G
Sbjct: 198 GIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG 256
Query: 306 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV 365
I D TS + A+GD A F + E RVE V +A A +
Sbjct: 257 IIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA----- 311
Query: 366 TGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGV 421
YD P+F+S D Q G G V+ G A F + K GK++G+
Sbjct: 312 KPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGS----VAERSFSAFCYKAGKLIGI 365
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 8e-59
Identities = 78/380 (20%), Positives = 133/380 (35%), Gaps = 74/380 (19%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYL---FP 57
M+E++ VI+G G++ ARE+ K L +I+ + Y +P LS +
Sbjct: 1 MSERA-PLVIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFSKNKDA 58
Query: 58 EGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 117
+G A ++ ++ T + D + + + +Y+
Sbjct: 59 DGLAMAEP-------------GAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRD 104
Query: 118 LVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDD 177
LV+A G+ +P VEG ++ + +++D
Sbjct: 105 LVLAWGAEP-------------------IRVP-----------VEGDAQDALYPINDLED 134
Query: 178 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 237
+ +A K+ + +++G G IG E + L + +V P MP L A
Sbjct: 135 YARFRQAAAGKR--RVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKA 192
Query: 238 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 297
+ G++ G V GE E L DG + D+VV VG RP L
Sbjct: 193 VQAGLEGLGVRFHLGPVLASLK--KAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTEL--- 247
Query: 298 QVAENKG-----GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQA 352
A G GI D +TS ++YA+GD A +V A
Sbjct: 248 --AFAAGLAVNRGIVVDRSLRTSHANIYALGDCAEVDGLNL------LYVMPLMACARAL 299
Query: 353 VKTIMATEGGKTVTGYDYLP 372
+T+ + Y P
Sbjct: 300 AQTLAGNP-----SQVAYGP 314
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 2e-58
Identities = 96/427 (22%), Positives = 163/427 (38%), Gaps = 85/427 (19%)
Query: 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
KS K +ILG G + AA+ + ++ +I+ E PY RP L++ + +
Sbjct: 6 HHKSTKILILGAGPAGFSAAKAALGKC---DDITMINSEKYLPYYRPRLNE-IIAKNKSI 61
Query: 62 RLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
+ +L +WY++ I++I S D +K + +G KY+ L
Sbjct: 62 -------------DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKL 108
Query: 119 VIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDA 178
+IA+GS + V AD IF L DDA
Sbjct: 109 IIASGSIA-------------------NKIK-----------VPHAD--EIFSLYSYDDA 136
Query: 179 DKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 238
K+ + K GKA ++GGG +G+EL+ A+ + S+ + + R D F
Sbjct: 137 LKIKDE--CKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFL 194
Query: 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ 298
+ GIKI + +E+ G + + V+ VG +P + K
Sbjct: 195 KDKLDRLGIKIYTNS-----------NFEEM----GDLIRSSCVITAVGVKPNLDFIKDT 239
Query: 299 VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358
+K GI +D +TS D+YA GDVA F K ++ A K E A
Sbjct: 240 EIASKRGILVNDHMETSIKDIYACGDVAEFYGKNPG------LINIANKQGEVAGLNAC- 292
Query: 359 TEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDG 416
G+ + + +P + +S GD + +F + K+ +K+
Sbjct: 293 ---GEDASYSEIIPSPILKVSGISIISCGDIENNKPSKVFRS----TQEDKYIVCMLKEN 345
Query: 417 KVVGVFL 423
K+ +
Sbjct: 346 KIDAAAV 352
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 1e-50
Identities = 77/330 (23%), Positives = 136/330 (41%), Gaps = 65/330 (19%)
Query: 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGF 66
K VI+G G A++ ++ E+ +I KE V Y +P LS Y+
Sbjct: 10 KVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAGFIPR----- 59
Query: 67 HVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
RL +WY+++GIE+ L+ E D K +++ G + Y LV+ATG
Sbjct: 60 --------NRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATG 110
Query: 124 STVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVE 183
+ + ++G + + LR I DAD++ E
Sbjct: 111 AR----------------AREPQ--------------IKGKE--YLLTLRTIFDADRIKE 138
Query: 184 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243
+I+ +A+++GGG+IGLEL+ L V +++ + +++ +
Sbjct: 139 SIENSG--EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLE 194
Query: 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 303
G+K + + +E L + +E + + +G P + L +
Sbjct: 195 ETGVKFFLNSELLEAN-------EEGVLTNSGFIEGKVKICAIGIVPNVDLARRSGIHTG 247
Query: 304 GGIETDDFFKTSADDVYAVGDVATFPMKLY 333
GI DD F+TSA DVYA+GD A + +
Sbjct: 248 RGILIDDNFRTSAKDVYAIGDCAEYSGIIA 277
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 3e-50
Identities = 41/253 (16%), Positives = 91/253 (35%), Gaps = 39/253 (15%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFKYQILVIATGSTVSITSLTSIR 135
E + + I+L+L+ E+V D+ ++ + + Y L++ATG++
Sbjct: 65 EEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFS------- 117
Query: 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVV 195
+ G+ + + + + A V ++ + V
Sbjct: 118 ------------TQI-----------RGSQTEKLLKYKFLSGALAAVPLLENSQ--TVAV 152
Query: 196 VGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVA 255
+G G IG+E L V + +P+ F ++ A + + +
Sbjct: 153 IGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETV 212
Query: 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-KGGIETDDFFKT 314
+G A+G V + + D + + P ++ ++ N I D + +T
Sbjct: 213 LGIEETANG---IVLETSEQEISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQT 269
Query: 315 SADDVYAVGDVAT 327
S +V+A+GD +
Sbjct: 270 SVPNVFAIGDCIS 282
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 4e-50
Identities = 60/255 (23%), Positives = 97/255 (38%), Gaps = 39/255 (15%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVSITSLTS 133
E + +G+ + +TEI + +G Y L+I+ G+
Sbjct: 63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE----- 117
Query: 134 IRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKA 193
L + G D NI+ +R A KL + +
Sbjct: 118 --------------LDI-----------PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNV 152
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
VV+G GYIG+E + A V+++ + + I I G
Sbjct: 153 VVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGE 212
Query: 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-KGGIETDDFF 312
+ DG V++V + D +AD+VVV VG RP + KG + + G I+TD++
Sbjct: 213 TVERYE--GDGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYM 269
Query: 313 KTSADDVYAVGDVAT 327
+TS DV+AVGD
Sbjct: 270 RTSEPDVFAVGDATL 284
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 1e-48
Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 40/255 (15%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVSITSLTS 133
PE G + + ++ D +KT+ T Y L++ TGS ++
Sbjct: 65 PEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV----- 119
Query: 134 IRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKA 193
P+ G D+ ++ + +DA KL E K
Sbjct: 120 --------------PPI-----------PGIDSSRVYLCKNYNDAKKLFEEAPKAK--TI 152
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 253
++G GYIG EL+ A N +V+++ + + F + Y G+ ++ G+
Sbjct: 153 TIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGS 212
Query: 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-KGGIETDDFF 312
F D E+ DG+ +++DI ++ +G RP L KG+VA G I TD++
Sbjct: 213 KVAAFEEV-DDEIITK-TLDGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYM 270
Query: 313 KTSADDVYAVGDVAT 327
+S D++A GD A
Sbjct: 271 HSSNRDIFAAGDSAA 285
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 3e-48
Identities = 53/253 (20%), Positives = 104/253 (41%), Gaps = 26/253 (10%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLL-SATGLIFK--YQILVIATGSTVSITSLTSIR 135
E + G ++ + + + D +KT+ G Y L+ ATGS +
Sbjct: 99 KEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPIL------- 151
Query: 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVV 195
P+ A +N+ +++ ++ ++ ++ K + V
Sbjct: 152 ------------PPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAV 199
Query: 196 VGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVA 255
VG GYIG+EL+ A + +V ++ C+ + D+ GI++ G
Sbjct: 200 VGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETV 259
Query: 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK-GGIETDDFFKT 314
+G+V+++ + D + D+V++ VG RP +L G++ + G + +T
Sbjct: 260 KEVA--GNGKVEKI-ITDKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQET 316
Query: 315 SADDVYAVGDVAT 327
S VYA+GD AT
Sbjct: 317 SIPGVYAIGDCAT 329
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 4e-46
Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 41/258 (15%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVSITSLT 132
PE+++ +E ++ T D A+ T+ TG Y LV+A GS +
Sbjct: 72 PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANR---- 127
Query: 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 192
P+ EG D + + +D+A+ + AI A + K
Sbjct: 128 ---------------PPV-----------EGMDLAGVTPVTNLDEAEFVQHAISAGEVSK 161
Query: 193 AVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
AV+VGGG+IGLE++ +L + ID ++V MP + ++ + +
Sbjct: 162 AVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHT 221
Query: 252 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETD 309
G V +G+V V + D RTL+AD+V++ G P L + E +G I D
Sbjct: 222 GEKVVRLEGE-NGKVARV-ITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVD 279
Query: 310 DFFKTSADDVYAVGDVAT 327
+TS D++A GD T
Sbjct: 280 TRMRTSDPDIFAGGDCVT 297
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 3e-45
Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 40/254 (15%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFK--YQILVIATGSTVSITSLTSIR 135
PE + +K GI+L L+ E++ D + G + LV A G++ +
Sbjct: 65 PEVFIKKRGIDLHLNAEVIEVDTGYVRVR-ENGGEKSYEWDYLVFANGASPQV------- 116
Query: 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVV 195
+EG + K +F DA + E ++ K V+
Sbjct: 117 ------------PA-----------IEGVNLKGVFTADLPPDALAIREYMEKYKVENVVI 153
Query: 196 VGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVA 255
+GGGYIG+E++ A +V+M+ + R F ++ E K + + +
Sbjct: 154 IGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKL-KKHVNLRLQEIT 212
Query: 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFK 313
+ + V++V D +A++V++ G +P I L K G I T++ +
Sbjct: 213 MKIE--GEERVEKVVT-DAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQ 269
Query: 314 TSADDVYAVGDVAT 327
TS ++VYA GDVA
Sbjct: 270 TSVENVYAAGDVAE 283
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-44
Identities = 61/257 (23%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVSITSLT 132
+ +++K GI+ + E+ + D K + + T +F+ Y L+IATG +
Sbjct: 99 VKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVM---- 154
Query: 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 192
EG D + + L+ I DA+++++ ++ K
Sbjct: 155 ---------------PEW-----------EGRDLQGVHLLKTIPDAERILKTLETNKVED 188
Query: 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 252
++GGG IGLE++ V M+ ++ D+A + I+I+
Sbjct: 189 VTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTN 247
Query: 253 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDD 310
F + V+ V+ D T +AD+V+V VG +P +G +KG IE +
Sbjct: 248 ENVKAFK--GNERVEAVET-DKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNA 304
Query: 311 FFKTSADDVYAVGDVAT 327
+ +T+ DVYA GD AT
Sbjct: 305 YMQTNVQDVYAAGDCAT 321
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 2e-44
Identities = 57/258 (22%), Positives = 114/258 (44%), Gaps = 44/258 (17%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVSITSLT 132
E ++ +++ + +E+V+ + KT+ T + Y +L+++ G+ +
Sbjct: 99 VERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIV---- 154
Query: 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNG 191
+ G + AK +F LR + D D++ I KK
Sbjct: 155 ---------------PS-----------IPGIEEAKALFTLRNVPDTDRIKAYIDEKKPR 188
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
A V+GGG+IG+E+ L+ I+V++V MP ++AA+ + N ++++
Sbjct: 189 HATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVF 247
Query: 252 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETD 309
+ V+LK G ++ D++++ +G +P SL KG +G I+ +
Sbjct: 248 EDGVDAL----EENGAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVN 303
Query: 310 DFFKTSADDVYAVGDVAT 327
+ F+TS +YA+GD
Sbjct: 304 EKFQTSDPHIYAIGDAIE 321
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 2e-43
Identities = 52/257 (20%), Positives = 98/257 (38%), Gaps = 48/257 (18%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVSITSLT 132
PE + ++ I + E++ + +T+ T F+ Y L+++ G++
Sbjct: 64 PEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS------- 116
Query: 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 192
G ++ F LR ++D D + + IKA + K
Sbjct: 117 ----------------AN----------SLGFESDITFTLRNLEDTDAIDQFIKANQVDK 150
Query: 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 252
+VVG GY+ LE+ L + ++++ L AD+ + I
Sbjct: 151 VLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLN 209
Query: 253 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDD 310
E+ K G+ D+++ GVG P + + KG I +D
Sbjct: 210 EEINAI------NGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVND 263
Query: 311 FFKTSADDVYAVGDVAT 327
F+T+ ++YA+GD+AT
Sbjct: 264 KFETNVPNIYAIGDIAT 280
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 6e-43
Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 56/274 (20%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVSITSLT 132
PE +K + +E+ + E+V D A+K + G ++ Y L+++ G+ +
Sbjct: 64 PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIV---- 119
Query: 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 192
P + G D LR I D D++++ I+
Sbjct: 120 ---------------PP-----------IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEH 153
Query: 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 252
A VVGGG+IGLE+ +L I +++ M ++A F ++G+ + G
Sbjct: 154 ATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAHQAIRDQGVDLRLG 212
Query: 253 TVAVGFTTNADGEVK-----------------EVKLKDGRTLEADIVVVGVGGRPLISLF 295
T + V + L +G LE D++++ +G RP L
Sbjct: 213 TALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLA 272
Query: 296 KGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 327
+ GGI+ + +TS +YAVGD
Sbjct: 273 RDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVE 306
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 1e-21
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 191 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247
+ + VGGG+I +E + A K V++ Y + R F I GI
Sbjct: 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGI 250
Query: 248 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN-K 303
+I+ + N DG K V + G+TL+ D+V++ +G P + L V K
Sbjct: 251 EIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK 309
Query: 304 GGIETDDFFKTSADDVYAVGDV 325
GG++ D+F +T+ ++YA+GD+
Sbjct: 310 GGVQVDEFSRTNVPNIYAIGDI 331
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-21
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 191 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247
+A+ VGGGYI +E + A K V + Y + R F +++ GI
Sbjct: 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGI 246
Query: 248 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKG 304
+ T NADG + V + G + D+V++ +G P L K V K
Sbjct: 247 NVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN 305
Query: 305 G-IETDDFFKTSADDVYAVGDV 325
G I+ D + KT+ D++YA+GDV
Sbjct: 306 GAIKVDAYSKTNVDNIYAIGDV 327
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 3e-21
Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 6/184 (3%)
Query: 183 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242
E K++ K +VG GYI +EL +K ID + + + F + E
Sbjct: 169 EFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDM 227
Query: 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVGVGGRPLIS---LFKGQ 298
I I+ V +D + + L DGR E D V+ VG P L K
Sbjct: 228 KKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLN 286
Query: 299 VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358
V N I D+ +TS +++YAVGD E + + + + +
Sbjct: 287 VETNNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTED 346
Query: 359 TEGG 362
Sbjct: 347 IFYN 350
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 6e-21
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
+ VVG GYIG+EL + + + F I+ +G ++
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLH 226
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-I 306
+ N DG + ++L+DGR+ D ++ +G P L V N+ G I
Sbjct: 227 TNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYI 285
Query: 307 ETDDFFKTSADDVYAVGDV 325
D + T+ + +YAVGD
Sbjct: 286 VVDKYQNTNIEGIYAVGDN 304
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 1e-20
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 13/144 (9%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---FTADIAAFYEGYYANKGIKII 250
+VVG G G E A + V++V + AD A E +A +G+++
Sbjct: 186 IVVGSGVTGAEFVDAYTELGVPVTVV--A--SQDHVLPYEDADAALVLEESFAERGVRLF 241
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGI 306
K A T G V V + DGRT+E ++ +G P S L + + +
Sbjct: 242 KNARAASVTRTGAG-VL-VTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYL 299
Query: 307 ETDDFFKTSADDVYAVGDVATFPM 330
D +T A +YA GD
Sbjct: 300 TVDRVSRTLATGIYAAGDCTGLLP 323
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 5e-20
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
V+VGGGYIG+E + + ++++ + R F D+ KGI II
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISII 250
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-I 306
+ + V L +G+T+ AD V++ G P + L + V N+ G +
Sbjct: 251 YEATVSQVQSTENC--YNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAV 308
Query: 307 ETDDFFKTSADDVYAVGDV 325
D+ T+ ++AVGDV
Sbjct: 309 VVDEKMTTNVSHIWAVGDV 327
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 66/406 (16%), Positives = 122/406 (30%), Gaps = 113/406 (27%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
++LGG A AA + ++ +I+K + Y RP P
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS-YFRP------ALPH---------- 47
Query: 69 CVGSGGERL------LPEWYKEKGIELILSTEIVRADIASKTLL----SATGLIFKYQIL 118
V G + L E EKGI+ + + D S + + +Y +
Sbjct: 48 -VAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYV 105
Query: 119 VIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDA 178
++ G+ L V+G K + + E + A
Sbjct: 106 IVGIGA------------------------------HLATELVKGW-DKYGYSVCEPEFA 134
Query: 179 DKLVEAIKAKKNGKAVVVGGGYIGLELS------------------AALKI--------- 211
KL E +++ + G + G + ++
Sbjct: 135 TKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFK 194
Query: 212 -----NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 266
+ + V++ P + + + Y GIK++ +
Sbjct: 195 KKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVASIYNQLGIKLVHNFKIKEIREH----- 247
Query: 267 KEVKLKDGRTLEAD--IVVVGVGGRPLISLFKGQVAENKGGIETDDFFK-TSADDVYAVG 323
E+ + G T+ AD I++ G P + + ++ G I TD D+VYAVG
Sbjct: 248 -EIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVG 306
Query: 324 DVATFPM-KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGY 368
D + + KL A + A + + G T
Sbjct: 307 DANSMTVPKL---------GYLAVMTGRIAAQHLANRLGVPTKVDK 343
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
K VVVG GYIG+EL+ + +V + R F I +Y +GI +
Sbjct: 186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVH 244
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVGVGGRPLISLF--KGQVAEN-KGGI 306
K + V N + + ++ + D ++++ D ++ +G + + + + N I
Sbjct: 245 KLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQI 304
Query: 307 ETDDFFKTSADDVYAVGDV 325
D++ T+ ++Y++GDV
Sbjct: 305 IADEYQNTNVPNIYSLGDV 323
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-19
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-RLFTADIAAFYEGYYANKGIKI 249
GK +VVG GYIGLE + LK + +++ + R F +A +GI
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS---IVLRGFDQQMAELVAASMEERGIPF 244
Query: 250 IKGTVAVGFTTNADGEV----KEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN 302
++ TV + DG++ K V+ + D V+ +G + L+ L V
Sbjct: 245 LRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ 304
Query: 303 KGGIETDDFFKTSADDVYAVGDV 325
K I D T+ ++YAVGD+
Sbjct: 305 KDKIPVDSQEATNVANIYAVGDI 327
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-19
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
++ GGGYI +E + + +++Y + F D+ KGI+I+
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRIL 229
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-I 306
+ + +ADG + + AD V++ +G P + L V N+ G I
Sbjct: 230 CEDIIQSVSADADG-RRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAI 288
Query: 307 ETDDFFKTSADDVYAVGDV 325
D F +TS +YA+GDV
Sbjct: 289 IVDAFSRTSTPGIYALGDV 307
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 1e-18
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
+ ++G GYIG+EL+ L+ +V++V E + F ++A +GI+
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETH 225
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-I 306
+A G V R D V+ VG P L + G +
Sbjct: 226 LEFAVAALERDAQG-TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMV 284
Query: 307 ETDDFFKTSADDVYAVGDV 325
TD + T+ VYA+GD+
Sbjct: 285 PTDAYQNTNVPGVYALGDI 303
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 4e-18
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 9/146 (6%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
VVVGG +E M+ + + A+ +G++II
Sbjct: 216 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQGMEIIS 274
Query: 252 GTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLFKGQVA----ENKG 304
G+ +A+G V+ V +E D V +G+G +P + ++ KG
Sbjct: 275 GSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAEL-AKILGLDLGPKG 333
Query: 305 GIETDDFFKTSADDVYAVGDVATFPM 330
+ +++ +TS +VYAVGD+ PM
Sbjct: 334 EVLVNEYLQTSVPNVYAVGDLIGGPM 359
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 3e-17
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 15/144 (10%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT---ADIAAFYEGYYANKGIKII 250
V+G + LEL+ A V+++ LF I + +GI+++
Sbjct: 180 AVIGSSVVALELAQAFARLGSKVTVL-----ARNTLFFREDPAIGEAVTAAFRAEGIEVL 234
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAEN-KGGI 306
+ T A V L AD ++V G P ++L V N +G I
Sbjct: 235 EHTQASQVAHMDGEFVLTTT---HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAI 291
Query: 307 ETDDFFKTSADDVYAVGDVATFPM 330
D +TS ++YA GD P
Sbjct: 292 VIDQGMRTSNPNIYAAGDCTDQPQ 315
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 6e-17
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 183 EAIKAKKN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 241
E I +++ ++ G G IG+E LK +DV++V P +P AD++ E
Sbjct: 163 EQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQ 221
Query: 242 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLIS---LFKG 297
+ G+ I+ T V L+A+ V+ +G P + L K
Sbjct: 222 FKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKA 281
Query: 298 QVA-ENKGGIETDDFFKTSADDVYAVGDVATFPM 330
VA ++ I DD+ +T+ +YA+GDV
Sbjct: 282 GVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQ 315
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 6e-17
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
GK +VVG Y+ LE + L +D +++ R F +++ + + G + +
Sbjct: 186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQFL 243
Query: 251 KGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGGRPLIS---LFKGQVAEN 302
KG V +++ V +D T D V+ +G P L K ++ N
Sbjct: 244 KGCVPSHIKKLPTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTN 302
Query: 303 -KGG-IETDDFFKTSADDVYAVGDV 325
K I D TS +YA+GDV
Sbjct: 303 PKNQKIIVDAQEATSVPHIYAIGDV 327
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 1e-16
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
+ +VVGGG IGLEL +V ++ +P +++ E + +G+ I
Sbjct: 169 RLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP-TMDLEVSRAAERVFKKQGLTIRT 227
Query: 252 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KG 304
G A G + V+L+ G LEAD V+V VG RP +G EN +G
Sbjct: 228 GVRVTAVVPEAKG-AR-VELEGGEVLEADRVLVAVGRRPYT---EGLSLENAGLSTDERG 282
Query: 305 GIETDDFFKTSADDVYAVGDVATFPM 330
I D+ +T +YA+GDV PM
Sbjct: 283 RIPVDEHLRTRVPHIYAIGDVVRGPM 308
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 4e-16
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
GK +VVG Y+ LE + L +DV+++ R F D+A + GIK I
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL--RGFDQDMANKIGEHMEEHGIKFI 268
Query: 251 KGTVAVGFTTNADGE--VKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG------ 297
+ V + G V + + E + V++ +G +
Sbjct: 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT---RKIGLETV 325
Query: 298 --QVAENKGGIETDDFFKTSADDVYAVGDVAT 327
++ E G I D +T+ +YA+GD+
Sbjct: 326 GVKINEKTGKIPVTDEEQTNVPYIYAIGDILE 357
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 6e-16
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 12/146 (8%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
G++V+VG GYI +E++ L S++ + R F + I+ N G++++
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 246
Query: 251 KGTVAVGFTTNADG-------EVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVA 300
K + G V + D ++ +G P L K +
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQ 306
Query: 301 EN-KGGIETDDFFKTSADDVYAVGDV 325
+ KG I D+F T+ +YAVGDV
Sbjct: 307 TDDKGHIIVDEFQNTNVKGIYAVGDV 332
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 1e-15
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
K VV+G G IG+EL + + DV+ V +I+ ++ +G K
Sbjct: 180 KMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKL 239
Query: 252 GTVAVGFTTNADGEVK-EVKLKDG---RTLEADIVVVGVGGRP---LISLFKGQVAEN-K 303
T G T +DG++ ++ G + D+++V +G RP + L + + + +
Sbjct: 240 NTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPR 299
Query: 304 GGIETDDFFKTSADDVYAVGDVATFPM 330
G I + F+T ++YA+GDV PM
Sbjct: 300 GRIPVNTRFQTKIPNIYAIGDVVAGPM 326
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
VVVGGGYIGLEL A + VS+V +P + +++ A GI +
Sbjct: 173 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHL 231
Query: 252 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAENKGGIET 308
G G + LEAD V+V VG RP +L + N I
Sbjct: 232 GHSVEG--YENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAI 289
Query: 309 DDFFKTSADDVYAVGDVATFPM 330
D+ +TS +V+A+GDVA PM
Sbjct: 290 DERCQTSMHNVWAIGDVAGEPM 311
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
K VV+G GYIGLE+ + +V++V +P A+I ++ +G+K
Sbjct: 179 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKL 237
Query: 252 GTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLFKGQVAEN------ 302
T VG T+ DG V+ G +EAD+V+V G P G +
Sbjct: 238 KTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT---SGLNLDKIGVETD 294
Query: 303 -KGGIETDDFFKTSADDVYAVGDVATFPM 330
G I ++ F T+ VYA+GDV PM
Sbjct: 295 KLGRILVNERFSTNVSGVYAIGDVIPGPM 323
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
GK +V+G Y+ LE + L DV+++ R F +A Y N G+K
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSILL--RGFDQQMAEKVGDYMENHGVKFA 344
Query: 251 KGTV--------AVGFTTNADGEVKE-VKLKDGRTLE--ADIVVVGVGGRPLIS---LFK 296
K V V N G + DG+ E + V+ VG P +S
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 297 GQVAENKGG-IETDDFFKTSADDVYAVGDV 325
V +K G + D +T+ +VYA+GD+
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 7e-15
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 14/149 (9%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
+VVGGG IGLEL + V++V + ++A + +GI
Sbjct: 200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG-GMDGEVAKQLQRMLTKQGIDFKL 258
Query: 252 GTVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN------ 302
G G + DG + VK + TL+A++V++ G +P G
Sbjct: 259 GAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST---DGLGLAKAGVVLD 315
Query: 303 -KGGIETDDFFKTSADDVYAVGDVATFPM 330
+G +E D F+TS VYA+GDV PM
Sbjct: 316 SRGRVEIDRHFQTSIAGVYAIGDVVRGPM 344
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 8e-15
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
+ +V+GGG +GLEL + +V+++ P +P + AA +GI++
Sbjct: 171 RLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVRT 229
Query: 252 GTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRP---LISLFKGQVA-ENKG 304
T AVG+ DG ++ +G + D V+V VG +P + L K V + +G
Sbjct: 230 KTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERG 289
Query: 305 GIETDDFFKTSADDVYAVGDVATFPM 330
I + +TS VYA+GD A P+
Sbjct: 290 FIRVNARMETSVPGVYAIGDAARPPL 315
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 8e-15
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
+ ++GGG IGLE+ + V++V +P ++A + + +G+
Sbjct: 185 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKKQGLDFKL 243
Query: 252 GTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGGRP---LISLFKGQVA-EN 302
T + N D V E+ ++D + LEA++++V VG RP + K + +
Sbjct: 244 STKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDK 303
Query: 303 KGGIETDDFFKTSADDVYAVGDVATFPM 330
+G + DD F + + VGDV PM
Sbjct: 304 RGRLVIDDQFNSKFPHIKVVGDVTFGPM 331
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 6/144 (4%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
K V+G G IGLEL + +V+++ +P +A + +G+KI+
Sbjct: 182 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILL 240
Query: 252 GTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA-ENKGGI 306
G G VK V + ++ D ++V VG RP + V + +G I
Sbjct: 241 GARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFI 300
Query: 307 ETDDFFKTSADDVYAVGDVATFPM 330
DD+ TS VYA+GDV M
Sbjct: 301 YVDDYCATSVPGVYAIGDVVRGAM 324
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 7/145 (4%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
K +++GGG IGLE+ + +V M D+ ++ + I+
Sbjct: 187 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQKQNEYRFDNIMV 245
Query: 252 GTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRP---LISLFKGQVA-ENKGG 305
T V DG + + D V+V G P LIS K VA ++G
Sbjct: 246 NTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGF 305
Query: 306 IETDDFFKTSADDVYAVGDVATFPM 330
IE D +T+ +YA+GD+ PM
Sbjct: 306 IEVDKQMRTNVPHIYAIGDIVGQPM 330
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
V++G GYIGLE+++ ++ + ++ + L DI + + I
Sbjct: 174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLL---SILKLNIKF 230
Query: 252 GTVAVGFTTNADGEVKEVK-LKDG--RTLEADIVVVGVGGRPLIS--LFKGQVAENKGGI 306
+ D E + + KDG +++ + VV+ G RP+I + ++ +K GI
Sbjct: 231 NSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGI 290
Query: 307 ETDDFFKTSADDVYAVGDVATFPM 330
D+ KT+ +V+A GD
Sbjct: 291 VVDETMKTNIPNVFATGDANGLAP 314
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
VV+GGGYIG+EL A V+++ + F +AA + KG++++
Sbjct: 172 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVT 230
Query: 252 GTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA-ENKGGI 306
+A G DG V + +T++AD V+V VG RP + L + + N+G I
Sbjct: 231 NALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLI 290
Query: 307 ETDDFFKTSADDVYAVGDVATFPM 330
E D +TS +++A+GD+ P
Sbjct: 291 EVDQQCRTSVPNIFAIGDIVPGPA 314
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 60/396 (15%), Positives = 109/396 (27%), Gaps = 88/396 (22%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
VILG G AA E + E+ +IS Y + F P
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISA---NDY--------FQFV------PSNPW 50
Query: 69 CVGSGG------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
VG G + + + KGI I + D ++ + A G Y L+IAT
Sbjct: 51 -VGVGWKERDDIAFPIRHYVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIAT 108
Query: 123 GSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGAD--AKNIFYLREIDDADK 180
G +L V G+D + + +D A++
Sbjct: 109 G------------------------------PKLAFENVPGSDPHEGPVQSICTVDHAER 138
Query: 181 LVEAIKA-KKNGKAVVVGGGYIGLELS-AALKI---------------NNIDVSMVYPEP 223
+A + +V+G G A + + + EP
Sbjct: 139 AFAEYQALLREPGPIVIGAM-AGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEP 197
Query: 224 WCMPRL--FTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKDGRTLE 278
+ D +GI+ N ++ + L
Sbjct: 198 YIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLP 257
Query: 279 ADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFK-TSADDVYAVGDVATFPMKLYREM 336
++ + + ++ + N GG + D+ + +++A G P +
Sbjct: 258 VKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPV 317
Query: 337 RRVE----HVDHARKSAEQAVKTIMATEGGKTVTGY 368
++ AV I A G+
Sbjct: 318 PTGAPKTGYM--IESMVSAAVHNIKADLEGRKGEQT 351
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 57/196 (29%)
Query: 188 KKNGKAVVVGGGYIGLELSAALK---INNIDVSMVYPEPW-------------CMPRLFT 231
+ + V++G G G+ + +K + +V+++ + R
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKER--- 58
Query: 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291
DIA Y KGI I + D E + + L DG T+ D +++ G +
Sbjct: 59 DDIAFPIRHYVERKGIHFIAQSA-EQI----DAEAQNITLADGNTVHYDYLMIATGPKLA 113
Query: 292 ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 351
G ++G +++ + V+H + A +
Sbjct: 114 FENVPG-SDPHEGPVQS----------IC-----------------TVDHAERAFAEYQA 145
Query: 352 AVKTIMATEGGKTVTG 367
++ E G V G
Sbjct: 146 LLR-----EPGPIVIG 156
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 29/149 (19%), Positives = 44/149 (29%), Gaps = 15/149 (10%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
V G G IGLEL AL + V + L ++ + E + N+
Sbjct: 176 SVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKTF-NEEFYFDA 233
Query: 252 GTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAEN------- 302
+ D K G T V+ G + + EN
Sbjct: 234 KARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DKLGLENTSIELDK 290
Query: 303 KGGIETDDF-FKTSADDVYAVGDVATFPM 330
K D+ +TS D ++ GD
Sbjct: 291 KNSPLFDELTLQTSVDHIFVAGDANNTLT 319
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 243 ANKGIKIIKGTVA--VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QV 299
+NK I +I ++ G G +K+V+ G +E + +
Sbjct: 191 SNKNIPVITESIRTLQG----EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGC 246
Query: 300 AENKGG-IETDDFFKTSADDVYAVGDVATFPMK 331
G DDF +TS ++Y G+ T
Sbjct: 247 ELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS 279
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 7e-13
Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 9/147 (6%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKII 250
VV+GGG IGLEL + +V++V P C P D+ G A +K +
Sbjct: 176 TMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNEKMKFM 234
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRP---LISLFKGQVA-ENKG 304
T VG T N D EV+ K+G+ T+ + ++V VG RP + L K VA +G
Sbjct: 235 TSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERG 294
Query: 305 GIETDDFFKTSADDVYAVGDVATF-PM 330
++ D F+TS DVYA+GDV PM
Sbjct: 295 FVKIGDHFETSIPDVYAIGDVVDKGPM 321
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 42/259 (16%), Positives = 70/259 (27%), Gaps = 62/259 (23%)
Query: 78 LPEWY-----KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLT 132
+ E+ + +E+ + + DI F ++ ++ ATG+T
Sbjct: 445 VKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTD--- 491
Query: 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 192
V R + A+ + ++ GK
Sbjct: 492 -------------------GVARFHTTALPIAEGMQVLGPDDLFAGRLPD--------GK 524
Query: 193 AVVV---GGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 249
VVV Y+G ++ L +VS+V P + G+
Sbjct: 525 KVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVAR 584
Query: 250 IKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIE 307
+ V G V R LE D VV+ P L+ VA G
Sbjct: 585 VTDHAVVAVG---AGGVTVRDTYASIERELECDAVVMVTARLPREELYLDLVARRDAGEI 641
Query: 308 TDDFFKTSADDVYAVGDVA 326
V +GD
Sbjct: 642 A---------SVRGIGDAW 651
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 30/151 (19%)
Query: 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY-----PEPWCMPRLFTADIAAFYEGYYA 243
GK V+ + + AL + + + E AD A A
Sbjct: 140 DQGKIGVIAASPMAIH--HALMLPDW-GETTFFTNGIVE-------PDADQHALL----A 185
Query: 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG---QVA 300
+G+++ + +AD V L DGR++ + R + + V
Sbjct: 186 ARGVRVETTRIR-EIAGHAD-----VVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVE 239
Query: 301 ENKGG--IETDDFFKTSADDVYAVGDVATFP 329
E G I TD +T+A ++A GDVA
Sbjct: 240 EGPMGSTIVTDPMKQTTARGIFACGDVARPA 270
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 17/151 (11%)
Query: 189 KNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 246
K + V+GGG G+E AA+ + I V+++ P AD + + K
Sbjct: 354 KGKRVAVIGGGNSGVE--AAIDLAGIVEHVTLLEFAP-----EMKAD-QVLQDKVRSLKN 405
Query: 247 IKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKGQVAE 301
+ II + +V ++ +D + + + V +G P +G +
Sbjct: 406 VDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALER 464
Query: 302 NKGG-IETDDFFKTSADDVYAVGDVATFPMK 331
N+ G I D +TS V+A GD T P K
Sbjct: 465 NRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 45/247 (18%)
Query: 93 TEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQ 152
T+ + D + + TG +++ + ++IA G L F R LP
Sbjct: 98 TKYTKLDDGTFETRTNTGNVYRSRAVLIAAG----------------LGAFEPRKLPQLG 141
Query: 153 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 212
++ +++Y + + K + V+VGGG L+ + L N
Sbjct: 142 -------NIDHLTGSSVYYA--VKSVEDF-------KGKRVVIVGGGDSALDWTVGLIKN 185
Query: 213 NIDVSMVYPEPWCMPRLFTA--DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 270
V++V+ F A E AN I + T + +G + V
Sbjct: 186 AASVTLVHRGH-----EFQGHGKTAHEVERARANGTIDVYLETEVASIEES-NGVLTRVH 239
Query: 271 LKDG----RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDV 325
L+ T+EAD +++ +G + + + + + D KTS D +YA GD+
Sbjct: 240 LRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDI 299
Query: 326 ATFPMKL 332
A +P KL
Sbjct: 300 AYYPGKL 306
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 31/187 (16%)
Query: 159 FGVEGADA---KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215
G G + ++Y + + + + ++VGGG ++ + L
Sbjct: 127 IGAPGEREFEGRGVYYA--VKSKAEF-------QGKRVLIVGGGDSAVDWALNLLDTARR 177
Query: 216 VSMVYPEPWCMPR--LFTA--DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 271
+++++ R F A + ++++ D V+ +
Sbjct: 178 ITLIH-------RRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRV--EGDERVRWAVV 228
Query: 272 KDGRT-----LEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDV 325
+T LE D V++ G + +A K I+ D TS VYA GD+
Sbjct: 229 FHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDI 288
Query: 326 ATFPMKL 332
T+P KL
Sbjct: 289 VTYPGKL 295
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 33/188 (17%), Positives = 73/188 (38%), Gaps = 37/188 (19%)
Query: 159 FGVEGADA---KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215
+E A+ KN+ Y +DD K + ++GGG ++ + L+ +
Sbjct: 129 LELENAEQYEGKNLHYF--VDDLQKF-------AGRRVAILGGGDSAVDWALMLEPIAKE 179
Query: 216 VSMVYPEPWCMPR--LFTA---DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 270
VS+++ R F A + + + ++ V + +++++
Sbjct: 180 VSIIH-------RRDKFRAHEHSVENLHAS-----KVNVLTPFVPAEL--IGEDKIEQLV 225
Query: 271 LKDGRT-----LEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGD 324
L++ + LE D ++V G + K + K I +T+ + +A GD
Sbjct: 226 LEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGD 285
Query: 325 VATFPMKL 332
+ T+ K+
Sbjct: 286 ICTYEGKV 293
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 242 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFK 296
+ K + II + V ++ +D + +E + V +G P + +
Sbjct: 190 RSLKNVDIILNAQTTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLE 248
Query: 297 GQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMK 331
G V N+ G I D +T+ V+A GD T P K
Sbjct: 249 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 67/443 (15%), Positives = 123/443 (27%), Gaps = 96/443 (21%)
Query: 9 VILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
V++GGG + G AA+ E+ +I + Y
Sbjct: 6 VVVGGG-TGGATAAKYIKLAD-PSIEVTLIEP-----------NTDYYTC------YLS- 45
Query: 68 VCVGSGGERLLPEWYKE------KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIA 121
V GG+R L GI+++ D K + +A G F Y V+A
Sbjct: 46 NEVI-GGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGYDRCVVA 103
Query: 122 TGSTV---SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDA 178
G + I + E A AK + +
Sbjct: 104 PGIELIYDKIEGYS-----------------------------EEAAAKLPHAWKAGEQT 134
Query: 179 DKLVEAIKAKKNGKAVVV----------GGGYIGLELSAA-LKINNI--DVSMVYPEP-W 224
L + ++ +G VV+ G Y A LK + V ++ +
Sbjct: 135 AILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTF 194
Query: 225 CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284
F+ Y N I+ G + DG V+ G +AD++ +
Sbjct: 195 SKQSQFSKGWERLYGFGTENAMIEWHPGPDSA--VVKVDGGEMMVETAFGDEFKADVINL 252
Query: 285 GVGGRPLISLFKGQVAENKGGIETD--DFFKTSADDVYAVGDVATF-PMKLYREMRRVEH 341
R + + G D F + ++ +GD + PM
Sbjct: 253 IPPQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYS----- 307
Query: 342 VDHARKSAEQAVKTIMATEGGKTV-----TGYDYLPYFYSRAFDLSWQF-YGDNVGDTVL 395
A + A ++ G+ Y + ++ + +
Sbjct: 308 ---ANSQGKVAAAAVVVLLKGEEPGTPSYLNTCYSILAPAYGISVAAIYRPNADGSAIES 364
Query: 396 FGDNDLASATHKFGTYWIKDGKV 418
D+ + W+ + +V
Sbjct: 365 VPDSGGVTPVDA--PDWVLEREV 385
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 187 AKKNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEP---------WCMPRLFTADIA 235
A + K VVVGGG G + +K+ +I+V+++ P + +
Sbjct: 1 AGR--KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESI 58
Query: 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287
GI+++ + T D + K VK G D VV G
Sbjct: 59 KHGYDGLRAHGIQVVHDSA-----TGIDPDKKLVKTAGGAEFGYDRCVVAPG 105
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 8e-07
Identities = 40/155 (25%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY-----PEPWCMPRLFTADIAAFYEGYYA 243
K + V +GGG G AA+ ++ V V P+ + + Y
Sbjct: 154 KGKRVVTIGGGNSGAI--AAISMSEY-VKNVTIIEYMPK-------YMCE--NAYVQEIK 201
Query: 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKGQ 298
+ I I + V VK KD T +E D V + VG P S K
Sbjct: 202 KRNIPYIMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDS 260
Query: 299 -VAENKGG-IETDDFFKTSADDVYAVGDVATFPMK 331
V ++ G I D +TS VYA GDV +
Sbjct: 261 GVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFA 295
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 8e-07
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 297
AN +K I T V VKL++ +T L D V + +G P + K
Sbjct: 199 ANPKMKFIWDTAVEEI--QGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKD 256
Query: 298 QVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYR 334
V+ G ++ D T+ ++A GDV+ +YR
Sbjct: 257 TVSLRDDGYVDVRDEIYTNIPMLFAAGDVSD---YIYR 291
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 297
++ + +V D VK+V +++ +T L + V + +G P K
Sbjct: 201 KKPNVEFVLNSVVKEI--KGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKS 258
Query: 298 QVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 334
E G I+ D++ +TS V+A GD + +R
Sbjct: 259 NGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS-AWLGFR 296
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 60/349 (17%), Positives = 106/349 (30%), Gaps = 96/349 (27%)
Query: 80 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHC 139
E K+ G+++I + +I TL Y+ I G
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEE-----GYKAAFIGIGLPEP------------ 288
Query: 140 LCCFFLRTLPLFQVLRLTDFGVEGADAKNIF----YLREIDDADKLVEAIKA----KKNG 191
+T +FQ + + +L + + K G
Sbjct: 289 ------KTDDIFQ---------GLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRG 333
Query: 192 KAVVVGGGYIGLELSA------ALKINNIDVSMVY----PEPWCMPRLFTADIAAFYEGY 241
+V+G G A AL+ V +V+ + A E
Sbjct: 334 AVIVLGAGDT-----AFDCATSALRCGARRVFLVFRKGFVN---IR-------AVPEEVE 378
Query: 242 YANK-GIKIIKGTVAVGFTTNADGEVKEVKLK------DGR---------TLEADIVVVG 285
A + + + G + V+ G+ L+AD+V+
Sbjct: 379 LAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISA 437
Query: 286 VGGR---PLISLFKGQVAENK-GGIETDDF-FKTSADDVYAVGDVATFPMKLYREMRRVE 340
G P + + N+ E D +TS V+A GD+ VE
Sbjct: 438 FGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTT------VE 491
Query: 341 HVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF--DLSWQFYG 387
V+ ++++ K I A + G +V+ LP FY+ D+S + G
Sbjct: 492 SVNDGKQASWYIHKYIQA-QYGASVSAKPELPLFYTPVDLVDISVEMAG 539
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 37/263 (14%), Positives = 71/263 (26%), Gaps = 66/263 (25%)
Query: 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCC 142
K K +L L + + AD + + ++IATG+
Sbjct: 457 KNKESQLALGQKPMTADDVLQ---------YGADKVIIATGARW---------------- 491
Query: 143 FFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN-GKAVVV---GG 198
T + G + + + + + KK GK VV+
Sbjct: 492 ---NTDGTNCLTHDPIPGADASLPDQLTPE----------QVMDGKKKIGKRVVILNADT 538
Query: 199 GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 258
++ L+ L +V++V FT + ++ +
Sbjct: 539 YFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMR-RLHELHVEELGDHFCSRI 597
Query: 259 TTNA---------------DGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAE 301
G + + R +E D +V+ G +L+ A
Sbjct: 598 EPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKAR 657
Query: 302 NKGGIETDDFFKTSADDVYAVGD 324
E D +Y +GD
Sbjct: 658 ESEWAEND------IKGIYLIGD 674
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 297
N I+ + V +A G V + +K+ T L + VG ++ K
Sbjct: 190 NNDKIEFLTPYVVEEIKGDASG-VSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQ 248
Query: 298 QVAEN------KGGIETDDFFKTSADDVYAVGDVATFPMKLYR 334
+ G I D KT+ ++A GD+ +
Sbjct: 249 EDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRI---FAPK 288
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 269 VKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAE-----NKGG-IETDDFFKTSADDVY 320
VKLKDG R L + VG + K ++ +GG + D +TS ++
Sbjct: 221 VKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLF 280
Query: 321 AVGDVATFPMKLYR 334
A GD+ +
Sbjct: 281 AAGDLRK---DAPK 291
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 297
N I+ + V + D V ++++D T L V V +G P L +
Sbjct: 202 NNDKIRFLTNHTVVAV--DGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVRE 259
Query: 298 QVAENKGG-IETD-DFFKTSADDVYAVGDVATFPMKLYR 334
+ + G + TS V+A GD+ + YR
Sbjct: 260 AIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVD---RTYR 295
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 461 | |||
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.98 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.97 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.97 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.97 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.97 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.97 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.97 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.97 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.97 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.97 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.95 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.95 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.93 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.92 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.9 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.83 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.72 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.62 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.59 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.57 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.37 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.33 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.3 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.23 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.22 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.15 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 99.15 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 99.12 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.06 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 99.03 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 99.02 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.96 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.96 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.94 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.88 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.87 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.87 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.87 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.87 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.86 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.85 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.81 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.8 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.79 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.79 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.78 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.78 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.77 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.76 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.76 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.76 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.75 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.75 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.74 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.74 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.74 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.73 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.73 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.72 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.71 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.7 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.7 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.67 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.66 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.66 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.65 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.63 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.62 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.61 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.61 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.6 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.6 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.59 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.58 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.58 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.58 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.57 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.57 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.57 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.57 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.56 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.55 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.55 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.54 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.53 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.53 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.52 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.52 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.52 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 98.52 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.51 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.51 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.5 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.5 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.49 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.49 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.49 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.48 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.48 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.46 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.45 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.45 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.45 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.45 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.43 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.43 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.43 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.42 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.42 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.42 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.42 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.41 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.39 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.39 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.37 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.37 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.37 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.35 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.35 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.34 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.34 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.33 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.33 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.33 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.32 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.32 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.32 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.31 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.31 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.3 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.3 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.3 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.3 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.3 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.3 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.29 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.28 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.27 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.27 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.26 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.25 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.24 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.23 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.23 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.23 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.23 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.22 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.22 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.22 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.22 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.22 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 98.2 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.2 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.2 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.2 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.19 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.18 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.17 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 98.17 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.17 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.16 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.16 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.15 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.14 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.14 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.13 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.13 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.13 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.13 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.13 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.12 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.12 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.11 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.1 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.1 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.1 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.09 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.08 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.08 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.08 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.08 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.07 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.07 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.06 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.05 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.04 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.03 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.03 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.02 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.01 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.01 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.99 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 97.99 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.97 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.97 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.95 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.95 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.94 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.93 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.92 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.92 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.92 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.91 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.9 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.9 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.89 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.87 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 97.87 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.85 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.85 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.84 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.84 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.83 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.83 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.82 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.82 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.79 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.79 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.76 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.75 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.75 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.73 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.73 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 97.72 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.71 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.68 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.68 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.68 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.67 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.64 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.63 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.62 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.62 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 97.61 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.61 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.6 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.58 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.57 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.56 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.53 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.52 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.51 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.5 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.5 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.49 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.48 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.48 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.47 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.45 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.37 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.29 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.22 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.22 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.2 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.2 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.17 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.17 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.17 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.11 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 97.11 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.08 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.02 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 96.98 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 96.97 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 96.96 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 96.93 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.9 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 96.89 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 96.88 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.78 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.76 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.71 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.7 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.68 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 96.66 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.63 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.62 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.56 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.42 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.04 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 95.99 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 95.64 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.58 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.49 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 95.28 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 95.19 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.14 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.13 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 94.79 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.68 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 94.67 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.64 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.63 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.59 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 94.56 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 94.51 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 94.5 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.26 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 94.2 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 94.07 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 93.74 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 93.73 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 93.67 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 93.4 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.39 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 93.31 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 93.22 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 93.19 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 93.15 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 93.12 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 93.1 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 93.04 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 92.95 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 92.91 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 92.9 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 92.9 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 92.9 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 92.8 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.77 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 92.69 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 92.62 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 92.56 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 92.55 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 92.51 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 92.51 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 92.48 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 92.45 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 92.44 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 92.41 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 92.41 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 92.35 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.28 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 92.26 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 92.22 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 92.22 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.15 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 92.04 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 92.03 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 92.0 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 91.99 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 91.96 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 91.82 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.78 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 91.77 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 91.75 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 91.66 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 91.61 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 91.6 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 91.6 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 91.5 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 91.45 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 91.42 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.42 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 91.33 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 91.29 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 91.27 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 91.25 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 91.19 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 91.16 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 91.12 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 90.89 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.89 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 90.77 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 90.77 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 90.73 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 90.7 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 90.59 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.58 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 90.58 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 90.42 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.39 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 90.37 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 90.21 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 90.17 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 90.06 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 90.05 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 90.03 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 89.88 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 89.87 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 89.85 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.78 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 89.78 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 89.76 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 89.72 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 89.66 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 89.64 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 89.6 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 89.46 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 89.45 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 89.43 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 89.38 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.31 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 89.31 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 89.28 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 89.28 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 89.27 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 89.25 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 89.16 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 89.04 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 89.01 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 88.98 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 88.98 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 88.9 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 88.88 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 88.88 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 88.83 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 88.82 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 88.82 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 88.77 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 88.74 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 88.72 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 88.69 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 88.68 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 88.56 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 88.47 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 88.31 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 88.31 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 88.14 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 88.11 |
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-55 Score=441.10 Aligned_cols=401 Identities=30% Similarity=0.489 Sum_probs=344.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+++||||||||+||++||.+|++.|+ +.+|+|+|+++..+|.++++++.++...... . .......+++.
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~--~--------~~~~~~~~~~~ 76 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREKTF--E--------RICIRPAQFWE 76 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSSCS--G--------GGBSSCHHHHH
T ss_pred CCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCCCH--H--------HhccCCHHHHH
Confidence 46899999999999999999999986 4579999999999999888876665432111 0 11235678889
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.+++++.++++..++...+.+.+.+++.+.||+||+|||++|..|+ ++|
T Consensus 77 ~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~------------------------------i~g 126 (415)
T 3lxd_A 77 DKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLS------------------------------CVG 126 (415)
T ss_dssp HTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCB------------------------------TTS
T ss_pred HCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCC------------------------------CCC
Confidence 99999999999999999999999999999999999999999994333 455
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
.+..+++++++.+++..+.+.+.. .+++++|||+|++|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.++
T Consensus 127 ~~~~~v~~~~~~~d~~~l~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~ 205 (415)
T 3lxd_A 127 ADLAGVHAVRTKEDADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHR 205 (415)
T ss_dssp SCCBTEECCCSHHHHHHHHHHHHT-TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHH
T ss_pred ccccCEEEEcCHHHHHHHHHHhhh-cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHH
Confidence 566778999999999998887752 2789999999999999999999999999999999999987789999999999999
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEe
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAV 322 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~ 322 (461)
+.||+++++++|+++.. +++.+..|++++|++++||.||+|+|++|++++++. ++..++ +|.||+++||+.|+|||+
T Consensus 206 ~~GV~i~~~~~v~~i~~-~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-gi~vd~~~~t~~~~iyA~ 283 (415)
T 3lxd_A 206 AHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGN-GVDVDEFCRTSLTDVYAI 283 (415)
T ss_dssp HTTCEEEETCCEEEEEE-SSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCSS-SEECCTTCBCSSTTEEEC
T ss_pred hCCCEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcCC-CEEECCCCCcCCCCEEEE
Confidence 99999999999999987 456777899999999999999999999999988754 455564 599999999999999999
Q ss_pred CcccccCcccc-CcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC--cEEEecCC
Q 012545 323 GDVATFPMKLY-REMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDN 399 (461)
Q Consensus 323 GD~~~~~~~~~-~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~ 399 (461)
|||+..+...+ |...++++|..|..||+.||+||++.. ..|..+|++|+..+++.++.+|...+ +.+..++.
T Consensus 284 GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 358 (415)
T 3lxd_A 284 GDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP-----VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDP 358 (415)
T ss_dssp GGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEEG
T ss_pred EeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC-----CCCCCCCeeEeeeCCcEEEEEeCCCCCCEEEEEecC
Confidence 99999887666 777788999999999999999999764 56888999999999999999997764 33444443
Q ss_pred ccccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 400 DLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
. ...|.++|+++|+|+|+.++| .+.+...+..+|..+.++ +.+.|.++++++.+
T Consensus 359 ~----~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~ 412 (415)
T 3lxd_A 359 A----TRSFSVVYLKGGKVVALDCVN-MVKDYVQGKKLVEARAQI-APEQLADAGVPLKE 412 (415)
T ss_dssp G----GTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHHTCCC-CHHHHTCTTSCGGG
T ss_pred C----CCeEEEEEEECCEEEEEEEEC-ChHHHHHHHHHHHCCCCC-CHHHhcCCCCChHH
Confidence 3 457999999999999999997 677788899999999988 67899999998754
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-55 Score=437.23 Aligned_cols=395 Identities=25% Similarity=0.395 Sum_probs=338.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHc
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
+||||||||+||++||.+|++.|+ +.+|+|+|+++..+|.++++++.++....... .. ....+++++.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~----------~~-~~~~~~~~~~ 70 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERP----------PI-LAEADWYGEA 70 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSSSC----------CB-SSCTTHHHHT
T ss_pred CCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCCHH----------Hh-cCCHHHHHHC
Confidence 499999999999999999999986 56799999999999999888876554321111 01 2456788899
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCC
Q 012545 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGAD 165 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 165 (461)
+++++.+++++.++...+.+.+.+++++.||+||+|||++|..|+ +||.+
T Consensus 71 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~------------------------------ipG~~ 120 (410)
T 3ef6_A 71 RIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMA------------------------------LPGSQ 120 (410)
T ss_dssp TCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCC------------------------------CTTTT
T ss_pred CCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCC------------------------------CCCcc
Confidence 999999999999999999999999989999999999999994433 45555
Q ss_pred CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhc
Q 012545 166 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 245 (461)
Q Consensus 166 ~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (461)
.++++++++.+++..+++.+. .+++++|||+|++|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.+++.
T Consensus 121 ~~~v~~~~~~~d~~~l~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~ 198 (410)
T 3ef6_A 121 LPGVVTLRTYGDVQVLRDSWT--SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTEL 198 (410)
T ss_dssp STTEECCCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHH
T ss_pred ccceEEeccHHHHHHHHHHhc--cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHC
Confidence 678999999999999887664 578999999999999999999999999999999999988768999999999999999
Q ss_pred CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEeCc
Q 012545 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGD 324 (461)
Q Consensus 246 GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD 324 (461)
||+++++++|++++. ++.+..|++++|+++++|.||+|+|++|+.++++. ++..+ ++|.||+++||+.|+|||+||
T Consensus 199 GV~i~~~~~v~~i~~--~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD 275 (410)
T 3ef6_A 199 GVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGD 275 (410)
T ss_dssp TCEEECSCCEEEEEC--SSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGG
T ss_pred CCEEEeCCEEEEEec--cCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEc
Confidence 999999999999986 44556899999999999999999999999987754 45556 559999999999999999999
Q ss_pred ccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC--cEEEecCCccc
Q 012545 325 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLA 402 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~ 402 (461)
|+..+... +...+++++..|..||+.||.||++.. ..|..+|++|+..+++.+..+|...+ +.+..++..
T Consensus 276 ~a~~~~~~-g~~~~~~~~~~A~~qg~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-- 347 (410)
T 3ef6_A 276 VASWPLRA-GGRRSLETYMNAQRQAAAVAAAILGKN-----VSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPG-- 347 (410)
T ss_dssp GEEEEBTT-SSEECCCCHHHHHHHHHHHHHHHTTCC-----CCCCBCCEEEEEETTEEEEEESCSSSSSEEEEESCTT--
T ss_pred ceeccCCC-CCeeeechHHHHHHHHHHHHHHHcCCC-----CCCCCCCeeEEEECCceEEEEcCCCCCCEEEEEeeCC--
Confidence 99987654 666677899999999999999999764 56888999999999999999997764 344555533
Q ss_pred cCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 403 SATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 403 ~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
...|.++++++|+|+|++++| .+.+...+..+|..+.++ +.+.|.++++++.+
T Consensus 348 --~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~i~~~~~~-~~~~l~~~~~~l~~ 400 (410)
T 3ef6_A 348 --SGAALLFRLQERRIQAVVAVD-APRDFALATRLVEARAAI-EPARLADLSNSMRD 400 (410)
T ss_dssp --SSSEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHHTCBC-CHHHHHCTTSCGGG
T ss_pred --CCeEEEEEEECCEEEEEEEEC-ChHHHHHHHHHHhCCCCC-CHHHhcCCCCCHHH
Confidence 456889999999999999998 577788899999999988 66899999998764
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=432.39 Aligned_cols=397 Identities=29% Similarity=0.459 Sum_probs=341.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
++||||||||+||++||.+|++.|+ +.+|+|||+++..+|.++++++.++....... .......+++.+
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~----------~~~~~~~~~~~~ 69 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGGDPN----------SLMFRPEKFFQD 69 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCCCTT----------SSBSSCHHHHHH
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCCCHH----------HccCCCHHHHHh
Confidence 3689999999999999999999987 34599999999999999888876654332111 112456788999
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.+++++. ++++.++.+.+.+.+.+++++.||+||+|||++|..| + +||.
T Consensus 70 ~~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~---------------------------~---i~g~ 118 (404)
T 3fg2_P 70 QAIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRML---------------------------D---VPNA 118 (404)
T ss_dssp TTEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEECCC---------------------------C---STTT
T ss_pred CCCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccCC---------------------------C---CCCC
Confidence 9999999 7999999999999999999999999999999998433 2 4555
Q ss_pred CCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHh
Q 012545 165 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 244 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (461)
+..+++++++..++..+.+.+. .+++++|+|+|++|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.+++
T Consensus 119 ~~~~v~~~~~~~d~~~l~~~~~--~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~ 196 (404)
T 3fg2_P 119 SLPDVLYLRTLDESEVLRQRMP--DKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSG 196 (404)
T ss_dssp TSTTEECCSSHHHHHHHHHHGG--GCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHh
Confidence 6678999999999999888775 47899999999999999999999999999999999999877899999999999999
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEeC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVG 323 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~G 323 (461)
.||+++++++|+++.. +++.+..|++++|++++||.||+|+|++|+.++++. ++..++| |.||+++||+.|+|||+|
T Consensus 197 ~GV~i~~~~~v~~i~~-~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~vd~~~~t~~~~iya~G 274 (404)
T 3fg2_P 197 AGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-IIVDQQLLTSDPHISAIG 274 (404)
T ss_dssp TTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EEECTTSBCSSTTEEECG
T ss_pred CCcEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EEECCCcccCCCCEEEee
Confidence 9999999999999987 356677899999999999999999999999988754 5655654 999999999999999999
Q ss_pred cccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC--cEEEecCCcc
Q 012545 324 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDL 401 (461)
Q Consensus 324 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~ 401 (461)
||+..+...+|...+++++..|..||+.||.||++.. ..|..+|++|+..+++.++.+|...+ +.+..++..
T Consensus 275 D~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~- 348 (404)
T 3fg2_P 275 DCALFESVRFGETMRVESVQNATDQARCVAARLTGDA-----KPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVA- 348 (404)
T ss_dssp GGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCCEEEEEEETT-
T ss_pred cceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC-----CCCCCCCceEeEECCcEEEEEeCCCCCCEEEEEecCC-
Confidence 9999887767777778899999999999999999764 56888999999999999998897653 344444433
Q ss_pred ccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhhccCCCcc
Q 012545 402 ASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
...|.++|+++|+|+|+.++| .+.+...+..+|..+.++ +.+.|.++++++.
T Consensus 349 ---~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 400 (404)
T 3fg2_P 349 ---ERSFSAFCYKAGKLIGIESVN-RAADHVFGRKILPLDKSV-TPEQAADLSFDLK 400 (404)
T ss_dssp ---TTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHTTTTCCC-CHHHHHCTTSCHH
T ss_pred ---CCcEEEEEEECCEEEEEEEeC-CHHHHHHHHHHHHcCCCC-CHHHhcCCCCChH
Confidence 567999999999999999997 668888899999999988 6789999998865
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=422.45 Aligned_cols=400 Identities=25% Similarity=0.414 Sum_probs=329.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.+||||||||+||++||..|++.|+ +.+|+|+|+++..+|.++.+++.++..... .. .......++++
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~--~~--------~~~~~~~~~~~ 71 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKAT--AE--------SLYLRTPDAYA 71 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSC--SG--------GGBSSCHHHHH
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCCC--hH--------HhcccCHHHHH
Confidence 46899999999999999999999986 345999999988888888777655532211 00 01124567888
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.+++++.+++|+.++.+.+.|.+.+++++.||+||+|||++|.+|++||.
T Consensus 72 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~----------------------------- 122 (431)
T 1q1r_A 72 AQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASG----------------------------- 122 (431)
T ss_dssp HTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTT-----------------------------
T ss_pred hCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCc-----------------------------
Confidence 999999999999999998889999888889999999999999966555543
Q ss_pred CCCCC---EEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 164 ADAKN---IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 164 ~~~~~---v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
+..+ ++++++.+++.++.+.+. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+
T Consensus 123 -~~~~~~~v~~~~~~~d~~~l~~~l~--~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 199 (431)
T 1q1r_A 123 -AVGKANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEH 199 (431)
T ss_dssp -HHHHSTTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHH
T ss_pred -ccCCCceEEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHH
Confidence 2223 888899999888876654 4789999999999999999999999999999999999887789999999999
Q ss_pred HHHhcCcEEEcCCcEEEEEec-CCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCC
Q 012545 241 YYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADD 318 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~ 318 (461)
.+++.||+++++++|++++.. +++.+..|++++|+++++|.||+|+|++|++++++. ++..++ +|.||+++||+.|+
T Consensus 200 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~ts~~~ 278 (431)
T 1q1r_A 200 LHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDN-GIVINEHMQTSDPL 278 (431)
T ss_dssp HHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSS-SEECCTTSBCSSTT
T ss_pred HHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCC-CEEECCCcccCCCC
Confidence 999999999999999999862 345666889999999999999999999999987754 455554 59999999999999
Q ss_pred EEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC--cEEEe
Q 012545 319 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLF 396 (461)
Q Consensus 319 vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~ 396 (461)
|||+|||+..+.+.++...+++++..|..||+.||.||++.. ..|..+|++|+..+++.+..+|...+ +.+..
T Consensus 279 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~ 353 (431)
T 1q1r_A 279 IMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV-----PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVR 353 (431)
T ss_dssp EEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEE
T ss_pred EEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC-----CCCCCCCeEEEEECCceEEEEeCCCCCCEEEEE
Confidence 999999999877666666677899999999999999999754 45778999999999988888887653 23333
Q ss_pred cCCccccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhhccCCCcc
Q 012545 397 GDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
++.. ...|.+++.++|+|+|++++|.. .+...+..+|..+.++ +.+.|.++.+++.
T Consensus 354 ~~~~----~~~~~~~~~~~~~l~G~~~~g~~-~~~~~~~~~i~~~~~~-~~~~l~~~~~~~~ 409 (431)
T 1q1r_A 354 GSLA----QPDFSVFYLQGDRVLAVDTVNRP-VEFNQSKQIITDRLPV-EPNLLGDESVPLK 409 (431)
T ss_dssp EETT----TTEEEEEEEETTEEEEEEEESCH-HHHHHHHHHHHTTCCC-CHHHHTCTTSCHH
T ss_pred ccCC----CCeEEEEEEeCCEEEEEEEECCh-HHHHHHHHHHHCCCCC-CHHHhhCCCCCHH
Confidence 3321 44678888899999999999855 5566677888888888 6678888887764
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-53 Score=427.24 Aligned_cols=401 Identities=18% Similarity=0.229 Sum_probs=314.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHc
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
.+|||||||+||++||..|+++|. +.+|+|||+++..+|.+|+++..+......... .......+++++.
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 70 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPYVIGEVVEDRRY---------ALAYTPEKFYDRK 70 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGG---------TBCCCHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHHHHcCCccchhh---------hhhcCHHHHHHhc
Confidence 479999999999999999999885 466999999998888888775432111100000 0112345678889
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCC-----CcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCC
Q 012545 86 GIELILSTEIVRADIASKTLLSAT-----GLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFG 160 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~-----~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (461)
+++++.+++|+.++.+.+.+.+.+ +.++.||+||||||++|.+|.
T Consensus 71 ~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~------------------------------ 120 (437)
T 4eqs_A 71 QITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLG------------------------------ 120 (437)
T ss_dssp CCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCC------------------------------
T ss_pred CCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccccc------------------------------
Confidence 999999999999999998876532 236899999999999984322
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
++ ..+++.+++.+++..+.+.+....+++++|+|+|++|+|+|..++++|.+||++++.+++++. +++++.+.+.+
T Consensus 121 i~---g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~ 196 (437)
T 4eqs_A 121 FE---SDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILD 196 (437)
T ss_dssp CC---CTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHH
T ss_pred cc---CceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHH
Confidence 33 356788899999999988887767899999999999999999999999999999999999987 79999999999
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCCCCCC
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADD 318 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~ 318 (461)
.++++||+++++++|++++. ..+.+++|+++++|.|++|+|++||+++++. ++.. .+|+|.||+++|||+||
T Consensus 197 ~l~~~gV~i~~~~~v~~~~~------~~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~ 270 (437)
T 4eqs_A 197 ELDKREIPYRLNEEINAING------NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPN 270 (437)
T ss_dssp HHHHTTCCEEESCCEEEEET------TEEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTT
T ss_pred HhhccceEEEeccEEEEecC------CeeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCC
Confidence 99999999999999999864 2578899999999999999999999998854 5665 67899999999999999
Q ss_pred EEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCCc------
Q 012545 319 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------ 392 (461)
Q Consensus 319 vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------ 392 (461)
|||+|||++.++...+...+.+.+..|.+||+++|+||++.... ....+...|.+ .+.+..+..+|.++.+
T Consensus 271 IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~-~~~~~~~~~~~--~~~~p~ia~vGlte~~a~~~~~ 347 (437)
T 4eqs_A 271 IYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTI-EFKGFLGNNIV--KFFDYTFASVGVKPNELKQFDY 347 (437)
T ss_dssp EEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTC-CCCCBCCCEEE--EETTEEEEEEESCGGGGGGSCE
T ss_pred EEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCc-ccccceeEEee--eeccceEEEeeCCHHHHHhCCc
Confidence 99999999998887777777889999999999999999986421 11233334443 3445555666766522
Q ss_pred E---EEecCCccc--cCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhhc-cCCCccc
Q 012545 393 T---VLFGDNDLA--SATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKN-EGLSFAS 459 (461)
Q Consensus 393 ~---~~~~~~~~~--~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~ 459 (461)
. +........ ..+++|.|+++ ++++|||+|++|++ ++| ++.++.+|++++|++||..+.- +.++|.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~ 424 (437)
T 4eqs_A 348 KMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSH 424 (437)
T ss_dssp EEEEEEEESSCTTSSSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCC
T ss_pred eEEEEecCCchhhcCCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCc
Confidence 1 122221111 23567888887 57999999999975 766 6899999999999998765532 2455554
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=419.29 Aligned_cols=392 Identities=26% Similarity=0.430 Sum_probs=320.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.+||+|||||+||++||..|++.|. +.+|+|+|+++..+|.++.+++.++.......+ ... +++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~ 70 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKI-------------RLD-CKR 70 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGS-------------BCC-CTT
T ss_pred CCCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCchhhh-------------hHH-HHH
Confidence 36899999999999999999999986 345999999998888887776555432110000 111 456
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCC-C
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV-E 162 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~ 162 (461)
+.+++++.+++|+.++.+.+.|.+.+++++.||+||+|||++|..|+ + +
T Consensus 71 ~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~------------------------------i~~ 120 (408)
T 2gqw_A 71 APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALP------------------------------TLQ 120 (408)
T ss_dssp SCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCG------------------------------GGT
T ss_pred HCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC------------------------------ccC
Confidence 78999999988999999889999988888999999999999984332 4 5
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
|.+ ++++++++.+++.++.+.+. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.+
T Consensus 121 G~~-~~v~~~~~~~~~~~l~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 197 (408)
T 2gqw_A 121 GAT-MPVHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYH 197 (408)
T ss_dssp TCS-SCEEECCSHHHHHHHHTTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHH
T ss_pred CCC-CcEEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHH
Confidence 555 67889999999988866553 478999999999999999999999999999999999998668999999999999
Q ss_pred HhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh-cccccCCCcEEeCCCCCCCCCCEEE
Q 012545 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYA 321 (461)
Q Consensus 243 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vya 321 (461)
++.||+++++++|++++ ++ .|++++|+++++|.||+|+|++|++++++ .++..++| |.||+++||+.|+|||
T Consensus 198 ~~~GV~i~~~~~v~~i~---~~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~g-i~Vd~~~~t~~~~IyA 270 (408)
T 2gqw_A 198 AAQGVDLRFERSVTGSV---DG---VVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDG-IFVDAYGRTTCPDVYA 270 (408)
T ss_dssp HHTTCEEEESCCEEEEE---TT---EEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBSSS-EECCTTCBCSSTTEEE
T ss_pred HHcCcEEEeCCEEEEEE---CC---EEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCC-EEECCCCccCCCCEEE
Confidence 99999999999999997 23 57888999999999999999999998775 34655654 9999999999999999
Q ss_pred eCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC-CcEEEecCCc
Q 012545 322 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-GDTVLFGDND 400 (461)
Q Consensus 322 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 400 (461)
+|||+..+...+|...+++++..|..||+.||.||.+... ..|..+|++|+..++..+..+|... .+.+..++..
T Consensus 271 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 346 (408)
T 2gqw_A 271 LGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA----PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVS 346 (408)
T ss_dssp CGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS----CCCCCCCEEEEEETTEEEEEEECSCCSEEEEESCCC
T ss_pred EEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC----CcCCCCCeEEEEECCceEEEECCCCCCEEEEEccCC
Confidence 9999998765556555667899999999999999997541 2678899999999999888888721 2233333311
Q ss_pred cccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhhccCCCcc
Q 012545 401 LASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 401 ~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
.....|.+++.++|+|+|++++|.. .++..+..+|+.+.++ +...|.++.+++.
T Consensus 347 --~~~~~~~~~~~~~~~l~G~~~~g~~-~~~~~~~~~i~~~~~~-~~~~l~~~~~~~~ 400 (408)
T 2gqw_A 347 --LDAPKFTLIELQKGRIVGATCVNNA-RDFAPLRRLLAVGAKP-DRAALADPATDLR 400 (408)
T ss_dssp --SSSCCEEEEEEETTEEEEEEEESCH-HHHHHHHHHHHTTCCC-CHHHHHCTTCCHH
T ss_pred --CCCCeEEEEEEeCCEEEEEEEECCh-HHHHHHHHHHHCCCCC-ChHHhcCCCCCHH
Confidence 1134688888899999999999854 5678899999999988 5568888887764
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-52 Score=413.88 Aligned_cols=363 Identities=26% Similarity=0.356 Sum_probs=304.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
++.+|||||||+||++||..|.+.+.+ |+|||+++..+|.+|.+++.+........ ......++++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~---itlie~~~~~~y~~~~l~~~l~g~~~~~~-----------l~~~~~~~~~ 73 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDD---ITMINSEKYLPYYRPRLNEIIAKNKSIDD-----------ILIKKNDWYE 73 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSC---EEEECSSSSCCBCGGGHHHHHHSCCCGGG-----------TBSSCHHHHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCE---EEEEECCCCCCcccChhhHHHcCCCCHHH-----------ccCCCHHHHH
Confidence 478999999999999999999554444 99999999999998888764432211111 1246788999
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.+++++.+++|+.++++.+.|.+.+++++.||+||+|||++|.+|+ +||
T Consensus 74 ~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~------------------------------i~G 123 (385)
T 3klj_A 74 KNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIK------------------------------VPH 123 (385)
T ss_dssp HTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCC------------------------------CTT
T ss_pred HCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCC------------------------------CCC
Confidence 99999999999999999999999999999999999999999994433 455
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
.+ +++++++++++.++++.+.. +++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.++
T Consensus 124 ~~--~v~~~~~~~d~~~l~~~l~~--~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~ 199 (385)
T 3klj_A 124 AD--EIFSLYSYDDALKIKDECKN--KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLD 199 (385)
T ss_dssp CS--CEECCSSHHHHHHHHHHHHH--HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHH
T ss_pred CC--CeEEeCCHHHHHHHHHHhhc--CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHH
Confidence 44 78999999999999887763 689999999999999999999999999999999999998789999999999999
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEe
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAV 322 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~ 322 (461)
+.||++++++.++++ |+++++|.||+|+|++|++++++. ++..++ +|.||+++||+.|+|||+
T Consensus 200 ~~gV~~~~~~~v~~i---------------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~-gi~vd~~~~t~~~~IyA~ 263 (385)
T 3klj_A 200 RLGIKIYTNSNFEEM---------------GDLIRSSCVITAVGVKPNLDFIKDTEIASKR-GILVNDHMETSIKDIYAC 263 (385)
T ss_dssp TTTCEEECSCCGGGC---------------HHHHHHSEEEECCCEEECCGGGTTSCCCBSS-SEEECTTCBCSSTTEEEC
T ss_pred hCCCEEEeCCEEEEc---------------CeEEecCeEEECcCcccChhhhhhcCCCcCC-CEEECCCcccCCCCEEEE
Confidence 999999999887765 567899999999999999988754 455554 499999999999999999
Q ss_pred CcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCC-CCeEEEecCCcceEEccCCCCc---EEEecC
Q 012545 323 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD---TVLFGD 398 (461)
Q Consensus 323 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~g~~~~~---~~~~~~ 398 (461)
|||+..+... .+++..|..||+.||.||++.. ..|.. .|++|++.++..+..+|..+++ .+.. +
T Consensus 264 GD~a~~~~~~------~~~~~~A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~ 331 (385)
T 3klj_A 264 GDVAEFYGKN------PGLINIANKQGEVAGLNACGED-----ASYSEIIPSPILKVSGISIISCGDIENNKPSKVFR-S 331 (385)
T ss_dssp GGGEEETTBC------CCCHHHHHHHHHHHHHHHTTCC-----CCCCCCCCCCEEEETTEEEEEESCCTTCCCSEEEE-E
T ss_pred EeeEecCCCc------ccHHHHHHHHHHHHHHHhcCCC-----cCCCCCCCcEEEEeCCCcEEEEcCCCCCCCeEEEE-E
Confidence 9999865431 2679999999999999999864 34554 6999999999999999987643 2322 2
Q ss_pred CccccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCCh
Q 012545 399 NDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 447 (461)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~ 447 (461)
. ....|.++++++|+|+|++++|+.+ ....+..+|.++.+++++
T Consensus 332 ~----~~~~~~~~~~~~~~l~g~~~~g~~~-~~~~~~~~i~~~~~~~~~ 375 (385)
T 3klj_A 332 T----QEDKYIVCMLKENKIDAAAVIGDVS-LGTKLKKAIDSSKSFDNI 375 (385)
T ss_dssp E----CSSCEEEEEEETTEEEEEEEESCHH-HHHHHHHHHHTTCBCSCC
T ss_pred C----CCCeEEEEEEECCEEEEEEEECCcH-HHHHHHHHHHcCCCcccc
Confidence 2 2567999999999999999998554 445789999999999886
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-51 Score=412.98 Aligned_cols=405 Identities=17% Similarity=0.210 Sum_probs=306.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHc
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
+||+|||||+||++||.+|++.+ +..+|+|||+++..+|..+.+... +... .... ........+++++.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~-~g~~V~vie~~~~~g~~~~~~~~~-~~~~-~~~~--------~~~~~~~~~~~~~~ 71 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKY-PQAEISLIDKQATVGYLSGGLSAY-FNHT-INEL--------HEARYITEEELRRQ 71 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC-SSSEEEEECSSSCCSSCCC--------------------------CCCCHHHHHHT
T ss_pred CCEEEECCCHHHHHHHHHHHhhC-cCCcEEEEECCCCCcccCccchhh-hcCC-CCCH--------HHhhcCCHHHHHHC
Confidence 69999999999999999999982 123499999998877664433211 1100 0000 01123467888899
Q ss_pred CcEEEcCCeEEEEeCCCCEEEc---CCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 86 GIELILSTEIVRADIASKTLLS---ATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~---~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
+++++.+++|+.++.+.+.+.+ .+++++.||++|+|||++|.+|++ +
T Consensus 72 gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i------------------------------~ 121 (452)
T 3oc4_A 72 KIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQI------------------------------R 121 (452)
T ss_dssp TEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCC------------------------------B
T ss_pred CCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCC------------------------------C
Confidence 9999999999999999988765 355679999999999999955544 4
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
|.+..++++++++.+...+.+... .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+
T Consensus 122 g~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l 199 (452)
T 3oc4_A 122 GSQTEKLLKYKFLSGALAAVPLLE--NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSL 199 (452)
T ss_dssp TTTCTTEEEGGGCC----CCHHHH--TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHH
T ss_pred CCCCCCEEEeCCHHHHHHHHHHHh--cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHH
Confidence 444566777777666665554443 579999999999999999999999999999999999998768999999999999
Q ss_pred HhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCCCCCCEEE
Q 012545 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYA 321 (461)
Q Consensus 243 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vya 321 (461)
++.||+++++++|++++. +++.+ .+.+++| ++++|.||+|+|++|++++++..+.. .+|+|.||+++||+.|+|||
T Consensus 200 ~~~GV~i~~~~~v~~i~~-~~~~v-~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~IyA 276 (452)
T 3oc4_A 200 EKQAVIFHFEETVLGIEE-TANGI-VLETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFA 276 (452)
T ss_dssp HTTTEEEEETCCEEEEEE-CSSCE-EEEESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred HHcCCEEEeCCEEEEEEc-cCCeE-EEEECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCccCCCCCEEE
Confidence 999999999999999986 34444 7888777 89999999999999999988665555 67899999999999999999
Q ss_pred eCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC------cEEE
Q 012545 322 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVL 395 (461)
Q Consensus 322 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~ 395 (461)
+|||+..+....+...+.+.+..|..||+.||.||++.... ....+. ...+.+|+..+..+|.++. ..+.
T Consensus 277 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~---~~~~~~~~~~~a~vG~te~~a~~~g~~~~ 352 (452)
T 3oc4_A 277 IGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHR-FIGSLR---TMGTKVGDYYLASTGLTETEGLFFPQTLA 352 (452)
T ss_dssp CGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCC-CCCCCC---CEEEEETTEEEEEEECCSGGGGGSSSCEE
T ss_pred EEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCcc-CCCccc---cEEEEEcCeeEEEecCCHHHHHHCCCceE
Confidence 99999987655555555678999999999999999975421 111222 3344556666777787652 2121
Q ss_pred ---e--cCCccccCCCcEEEEEE--eCCEEEEEEEecC-CHHH-HHHHHHHHHcCCCCCChhhh-hccCCCcccC
Q 012545 396 ---F--GDNDLASATHKFGTYWI--KDGKVVGVFLESG-TPEE-NKAIAKVARVQPSVESLDVL-KNEGLSFASK 460 (461)
Q Consensus 396 ---~--~~~~~~~~~~~~~~~~~--~~~~i~G~~~~g~-~~~~-~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~ 460 (461)
+ ........+.+|.|+++ ++++|||+|++|+ ++.+ ++.++.+|+++++++|+..+ .-+.++|.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~ 427 (452)
T 3oc4_A 353 SIIVRQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNI 427 (452)
T ss_dssp EEEEEEECTTTTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCS
T ss_pred EEEEecCCccCCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCc
Confidence 1 11111123567889888 4699999999998 6777 79999999999999988876 4566776653
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=412.06 Aligned_cols=413 Identities=23% Similarity=0.269 Sum_probs=297.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCC-CCCCCCceeecCCCCCCCCHhHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-TARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
++||+|||||+||++||..|++.+ +..+|+|||+++..+|.++.++..+..... ...+..+. .......+++.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~-~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~ 76 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLD-PEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATP-----YNVVRDPEFFR 76 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHC-TTSEEEEECCC--------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhC-cCCCEEEEECCCcccccccccchhhcCCCCchHHhcccc-----chhccCHHHHh
Confidence 579999999999999999999982 123499999999887776544321110000 00000000 00112233343
Q ss_pred -HcCcEEEcCCeEEEEeCCCCEEEcCC---Cc--EEecCEEEEccCCCccccccccccccCccccccccCCccccccccc
Q 012545 84 -EKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLT 157 (461)
Q Consensus 84 -~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~ 157 (461)
+.+++++.+++|+.++.+.+.+.+.+ ++ ++.||++|+|||++|.+|+
T Consensus 77 ~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~--------------------------- 129 (472)
T 3iwa_A 77 INKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP--------------------------- 129 (472)
T ss_dssp ----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCS---------------------------
T ss_pred hhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCC---------------------------
Confidence 58999999999999999998887654 55 7899999999999995444
Q ss_pred CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccCCccCCcccCHHHHH
Q 012545 158 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRLFTADIAA 236 (461)
Q Consensus 158 ~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~~~~~~~~~~ 236 (461)
++|.+.++++++++..++..+.+.+....+++++|+|+|++|+|+|..|.+. |.+|+++++.+++++..+++++.+
T Consensus 130 ---i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 206 (472)
T 3iwa_A 130 ---VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQ 206 (472)
T ss_dssp ---CTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHH
T ss_pred ---CCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHH
Confidence 4444456788899999998888777554689999999999999999999999 999999999999998558999999
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh-ccccc-CCCcEEeCCCCCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKT 314 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t 314 (461)
.+.+.+++.||+++++++|++++. +++.+ .+.+.+|+++++|.||+|+|++|+.++++ .++.. ++|+|.||+++||
T Consensus 207 ~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t 284 (472)
T 3iwa_A 207 MLRHDLEKNDVVVHTGEKVVRLEG-ENGKV-ARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRT 284 (472)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEE-SSSBE-EEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBC
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEc-cCCeE-EEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCccc
Confidence 999999999999999999999987 34444 47888999999999999999999998774 35665 5789999999999
Q ss_pred CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC----
Q 012545 315 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 390 (461)
Q Consensus 315 ~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 390 (461)
+.|+|||+|||+..+....+...+++++..|..||++||+||++... .....+|+++..+++..+..+|.++
T Consensus 285 ~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~a~vG~~e~~a~ 360 (472)
T 3iwa_A 285 SDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDA----TFPGAVGSWAVKLFEGSASGAGLTVEGAL 360 (472)
T ss_dssp SSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCC----CCCCBCCCEEEECSSCEEEEEECCHHHHH
T ss_pred CCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCc----cCCCCCcceEEEECCceeEEEECCHHHHH
Confidence 99999999999987766556555567888999999999999997542 2234567777888888888888775
Q ss_pred --CcEE---EecCCccc----cCCCcEEEEEE--eCCEEEEEEEecC---CHHH-HHHHHHHHHcCCCCCChhhhhccC-
Q 012545 391 --GDTV---LFGDNDLA----SATHKFGTYWI--KDGKVVGVFLESG---TPEE-NKAIAKVARVQPSVESLDVLKNEG- 454 (461)
Q Consensus 391 --~~~~---~~~~~~~~----~~~~~~~~~~~--~~~~i~G~~~~g~---~~~~-~~~~~~~~~~~~~~~~~~~l~~~~- 454 (461)
|..+ .+.....+ ..+.+|.|+++ ++|+|||+|++|+ .+.+ ++.++.+|++++|++||..+.-+-
T Consensus 361 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~ 440 (472)
T 3iwa_A 361 REGYDAVNVHVEQFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYS 440 (472)
T ss_dssp HTTCCEEEEEEEC-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--
T ss_pred HcCCceEEEEEecCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCC
Confidence 2211 22211111 23567888888 5899999999998 3345 799999999999998866554332
Q ss_pred CCccc
Q 012545 455 LSFAS 459 (461)
Q Consensus 455 ~~~~~ 459 (461)
++|.+
T Consensus 441 P~~~~ 445 (472)
T 3iwa_A 441 PPFAS 445 (472)
T ss_dssp -----
T ss_pred CCCCC
Confidence 44443
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-50 Score=407.63 Aligned_cols=405 Identities=20% Similarity=0.243 Sum_probs=306.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY- 82 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (461)
+++||+|||||+||++||..|++.+. ..+|+|+|+++...|..+.++..+....... .......+++
T Consensus 2 ~~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~-----------~~~~~~~~~~~ 69 (449)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPYVVEGLSTPD-----------KLMYYPPEVFI 69 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-----------------------------------CTHH
T ss_pred CcCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCccccCCCCCHH-----------HhhhcCHHHHH
Confidence 35899999999999999999999842 3459999999876654332221110000000 0112233444
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEcCCC-cEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCC
Q 012545 83 KEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV 161 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (461)
++.+++++.++++..++.+.+.+.+.++ .++.||+||+|||++|.+|+ +
T Consensus 70 ~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~------------------------------i 119 (449)
T 3kd9_A 70 KKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPA------------------------------I 119 (449)
T ss_dssp HHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCS------------------------------C
T ss_pred HhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCC------------------------------C
Confidence 6889999999999999988888888777 47999999999999995544 4
Q ss_pred CCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHH
Q 012545 162 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 241 (461)
Q Consensus 162 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~ 241 (461)
+|.+.+++++.++..++..+.+.+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.
T Consensus 120 ~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~ 199 (449)
T 3kd9_A 120 EGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEK 199 (449)
T ss_dssp BTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHH
T ss_pred CCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHH
Confidence 44455678888888888888887765567899999999999999999999999999999999999876899999999999
Q ss_pred HHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCCCCCCE
Q 012545 242 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDV 319 (461)
Q Consensus 242 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~v 319 (461)
+++. |++++++.+++++. ++.+..+ +.+|+++++|.||+|+|++|++++++. ++.. ++|+|.||+++||+.|+|
T Consensus 200 l~~~-v~i~~~~~v~~i~~--~~~v~~v-~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~I 275 (449)
T 3kd9_A 200 LKKH-VNLRLQEITMKIEG--EERVEKV-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENV 275 (449)
T ss_dssp HTTT-SEEEESCCEEEEEC--SSSCCEE-EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTE
T ss_pred HHhC-cEEEeCCeEEEEec--cCcEEEE-EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCE
Confidence 9999 99999999999986 3333333 457789999999999999999988754 5666 578899999999999999
Q ss_pred EEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC------CcE
Q 012545 320 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT 393 (461)
Q Consensus 320 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~ 393 (461)
||+|||+..+....|...+++++..|..||+.||.||++... ......|+.+..+++..+..+|.++ |..
T Consensus 276 yA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~ 351 (449)
T 3kd9_A 276 YAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKEL----HFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYD 351 (449)
T ss_dssp EECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCC----CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCC
T ss_pred EEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCc----cCCCcccceEEEEcCcEEEEecCCHHHHHHCCCc
Confidence 999999987766556555568899999999999999997542 1123345666777777777778764 222
Q ss_pred EEe---cCCccc----cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhh-hccCCCcc
Q 012545 394 VLF---GDNDLA----SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVL-KNEGLSFA 458 (461)
Q Consensus 394 ~~~---~~~~~~----~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 458 (461)
+.. .....+ ..+.+|.|+++ ++|+|||+|++|+.+.+ ++.++.+|++++|++||..+ ..+.++|.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~ 427 (449)
T 3kd9_A 352 VRTAFIKASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFA 427 (449)
T ss_dssp EEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTB
T ss_pred eEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence 211 111111 23567888888 35999999999999888 68999999999999886655 33444444
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=410.23 Aligned_cols=406 Identities=20% Similarity=0.309 Sum_probs=314.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+||+|||||+||++||..|++. |.+ |+|||+++..+|..+.+.. ++... .... .. ........++++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~g~-~~~~-~~-----~~~~~~~~~~~~ 69 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDAD---VTAYEMNDNISFLSCGIAL-YLGKE-IKNN-DP-----RGLFYSSPEELS 69 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEEESSSCCCBCGGGHHH-HHTTC-BGGG-CG-----GGGBSCCHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCcccccchh-hhcCC-cccC-CH-----HHhhhcCHHHHH
Confidence 5899999999999999999998 655 9999999866654332211 11100 0000 00 001234567788
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCC-----CcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSAT-----GLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTD 158 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~-----~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (461)
+.+++++.++++..++.+.+.+.+.+ ++++.||++|+|||++|.+|+
T Consensus 70 ~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~---------------------------- 121 (452)
T 2cdu_A 70 NLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP---------------------------- 121 (452)
T ss_dssp HTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCC----------------------------
T ss_pred HcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCC----------------------------
Confidence 89999999988999998888887643 467999999999999995443
Q ss_pred CCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHH
Q 012545 159 FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 238 (461)
Q Consensus 159 ~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~ 238 (461)
++|.+.+++++++++.+...+.+.+. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+
T Consensus 122 --i~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l 197 (452)
T 2cdu_A 122 --IPGIDSSRVYLCKNYNDAKKLFEEAP--KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDIL 197 (452)
T ss_dssp --CTTTTSTTEEECSSHHHHHHHHHHGG--GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHH
T ss_pred --CCCCCCCCEEEeCcHHHHHHHHHHhc--cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHH
Confidence 44444567899999999988877664 57999999999999999999999999999999999999866899999999
Q ss_pred HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCCCCC
Q 012545 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSAD 317 (461)
Q Consensus 239 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~ 317 (461)
.+.+++.||+++++++|++++. +++.+..+.+ +|+++++|.||+|+|++|++++++..+.. ++|+|.||+++||+.|
T Consensus 198 ~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~t~~~ 275 (452)
T 2cdu_A 198 AKDYEAHGVNLVLGSKVAAFEE-VDDEIITKTL-DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNR 275 (452)
T ss_dssp HHHHHHTTCEEEESSCEEEEEE-ETTEEEEEET-TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSBCSST
T ss_pred HHHHHHCCCEEEcCCeeEEEEc-CCCeEEEEEe-CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcCcCCC
Confidence 9999999999999999999986 3455544555 78899999999999999999987655555 5788999999999999
Q ss_pred CEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC------C
Q 012545 318 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------G 391 (461)
Q Consensus 318 ~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~ 391 (461)
+|||+|||+..+....+...+++++..|..||+.||.||++.. .......|+++..+++..+..+|.++ |
T Consensus 276 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g 351 (452)
T 2cdu_A 276 DIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK----VKDMGTQSSSGLKLYGRTYVSTGINTALAKANN 351 (452)
T ss_dssp TEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCC----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTT
T ss_pred CEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCC----CcCCCccceEEEEECCeeeEeecCCHHHHHHcC
Confidence 9999999999876555555556789999999999999998743 12223456677778888888888765 2
Q ss_pred cEE---EecCCccc----cCCCcEEEEEE--eCCEEEEEEEecC-CHHH-HHHHHHHHHcCCCCCChhhh-hccCCCccc
Q 012545 392 DTV---LFGDNDLA----SATHKFGTYWI--KDGKVVGVFLESG-TPEE-NKAIAKVARVQPSVESLDVL-KNEGLSFAS 459 (461)
Q Consensus 392 ~~~---~~~~~~~~----~~~~~~~~~~~--~~~~i~G~~~~g~-~~~~-~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~ 459 (461)
..+ .+.+.... ....+|.|+++ ++|+|+|++++|+ ++.+ ++.++.+|+++++++++..+ .-+.++|.+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e 431 (452)
T 2cdu_A 352 LKVSEVIIADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDR 431 (452)
T ss_dssp CCCEEEEEEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCC
T ss_pred CceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCc
Confidence 111 12221111 12346888877 4799999999998 6776 68999999999999888765 456677665
Q ss_pred C
Q 012545 460 K 460 (461)
Q Consensus 460 ~ 460 (461)
.
T Consensus 432 ~ 432 (452)
T 2cdu_A 432 P 432 (452)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=411.90 Aligned_cols=398 Identities=23% Similarity=0.315 Sum_probs=312.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH-H
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK-E 84 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (461)
+||+|||||+||++||..|++.+. ..+|+|+|+++..+|.++.++..+. ... ... ........+++. +
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~~~~-~~~-~~~--------~~~~~~~~~~~~~~ 70 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPYHIS-GEI-AQR--------SALVLQTPESFKAR 70 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHHHHT-SSS-CCG--------GGGBCCCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchHHhc-CCc-CCh--------HHhhccCHHHHHHh
Confidence 489999999999999999999842 3459999999987777554432111 100 000 001123344444 5
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCC---Cc--EEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
.+++++.+++|+.++.+.+.+.+.+ ++ ++.||+||+|||++|..|+
T Consensus 71 ~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~----------------------------- 121 (565)
T 3ntd_A 71 FNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP----------------------------- 121 (565)
T ss_dssp HCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC-----------------------------
T ss_pred cCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCC-----------------------------
Confidence 8999999999999999998877643 43 7899999999999995443
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
+||.+..++++++++.++..+.+.+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.
T Consensus 122 -ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~ 199 (565)
T 3ntd_A 122 -IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAH 199 (565)
T ss_dssp -CTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-SCHHHHHHHH
T ss_pred -CCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-cCHHHHHHHH
Confidence 45555667888999999988888777667899999999999999999999999999999999999985 8999999999
Q ss_pred HHHHhcCcEEEcCCcEEEEEec------------------CCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh-cccc
Q 012545 240 GYYANKGIKIIKGTVAVGFTTN------------------ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVA 300 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~------------------~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~-~~~~ 300 (461)
+.+++.||++++++++++++.+ .++. ..+.+.+|+++++|.||+|+|++|++++++ .++.
T Consensus 200 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~ 278 (565)
T 3ntd_A 200 QAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGH-LSLTLSNGELLETDLLIMAIGVRPETQLARDAGLA 278 (565)
T ss_dssp HHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCE-EEEEETTSCEEEESEEEECSCEEECCHHHHHHTCC
T ss_pred HHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCc-EEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcc
Confidence 9999999999999999999862 2333 457788999999999999999999998774 3566
Q ss_pred c-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC-CeEEEec
Q 012545 301 E-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL-PYFYSRA 378 (461)
Q Consensus 301 ~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~-p~~~~~~ 378 (461)
. ++|+|.||+++||+.|+|||+|||+..+....+....++++..|..||+.||+||++.. ..|... |..+..+
T Consensus 279 ~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-----~~~~~~~~~~~~~~ 353 (565)
T 3ntd_A 279 IGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-----ERYQGTQGTAICKV 353 (565)
T ss_dssp BCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC-----CCCCCBCCCEEEEE
T ss_pred cCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCC-----ccCCCcccceEEEE
Confidence 5 57899999999999999999999998777666666566789999999999999999764 224433 4455667
Q ss_pred CCcceEEccCCCCc---------EEEecCCccc----cCCCcEEEEEE--eCCEEEEEEEecCCH-HH-HHHHHHHHHcC
Q 012545 379 FDLSWQFYGDNVGD---------TVLFGDNDLA----SATHKFGTYWI--KDGKVVGVFLESGTP-EE-NKAIAKVARVQ 441 (461)
Q Consensus 379 ~~~~~~~~g~~~~~---------~~~~~~~~~~----~~~~~~~~~~~--~~~~i~G~~~~g~~~-~~-~~~~~~~~~~~ 441 (461)
++..+..+|.++.+ ...+.....+ ..+.+|.|+++ ++|+|||+|++|+++ .+ ++.++.+|+++
T Consensus 354 ~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~ 433 (565)
T 3ntd_A 354 FDLAVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAG 433 (565)
T ss_dssp TTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred cCcEEEEecCCHHHHHHcCCCeEEEEEecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcC
Confidence 78888888877521 1222111111 23457888888 689999999999998 66 79999999999
Q ss_pred CCCCChhhhh
Q 012545 442 PSVESLDVLK 451 (461)
Q Consensus 442 ~~~~~~~~l~ 451 (461)
+|++||..+.
T Consensus 434 ~~~~~l~~~~ 443 (565)
T 3ntd_A 434 MTVEQLQHLE 443 (565)
T ss_dssp CBHHHHTTCC
T ss_pred CCHHHHhhhh
Confidence 9998876654
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-49 Score=398.36 Aligned_cols=404 Identities=22% Similarity=0.279 Sum_probs=310.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+||||||||+||++||..|++. |.+ |+|||+++..+|..+.+.. ++... ..... .......++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~-~~~~~--------~~~~~~~~~~~ 67 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAE---IQWYEKGDFISFLSAGMQL-YLEGK-VKDVN--------SVRYMTGEKME 67 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSE---EEEEESSSSSSBCGGGHHH-HHTTS-SCCGG--------GSBSCCHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCe---EEEEECCCccCcccccchh-hhcCc-cCCHH--------HhhcCCHHHHH
Confidence 4899999999999999999998 554 9999999876654332211 11110 00000 11234567888
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCC---Cc--EEecCEEEEccCCCccccccccccccCccccccccCCcccccccccC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTD 158 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (461)
+.+++++.+++++.++.+.+.|.+.+ |+ ++.||++|+|||++|..|+
T Consensus 68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---------------------------- 119 (447)
T 1nhp_A 68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---------------------------- 119 (447)
T ss_dssp HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC----------------------------
T ss_pred HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCC----------------------------
Confidence 89999999999999999888887743 54 4899999999999995444
Q ss_pred CCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHH
Q 012545 159 FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 238 (461)
Q Consensus 159 ~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~ 238 (461)
+||.+.++++++++++++.++.+.+....+++++|||+|++|+|+|..|++.|.+|+++++.+.+++..+++++.+.+
T Consensus 120 --i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l 197 (447)
T 1nhp_A 120 --IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVL 197 (447)
T ss_dssp --STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHH
T ss_pred --CCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHH
Confidence 444445568888889999888877754458999999999999999999999999999999999988866899999999
Q ss_pred HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCCCCC
Q 012545 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSAD 317 (461)
Q Consensus 239 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~ 317 (461)
.+.+++.||+++++++|++++. ++.+..+.+ +++++++|.||+|+|++|+.++++..+.. .+|+|.||+++||+.|
T Consensus 198 ~~~l~~~gv~i~~~~~v~~i~~--~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~t~~~ 274 (447)
T 1nhp_A 198 TEEMEANNITIATGETVERYEG--DGRVQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEP 274 (447)
T ss_dssp HHHHHTTTEEEEESCCEEEEEC--SSBCCEEEE-SSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSST
T ss_pred HHHHHhCCCEEEcCCEEEEEEc--cCcEEEEEE-CCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccccCCCC
Confidence 9999999999999999999986 344434555 55789999999999999999887655554 5788999999999999
Q ss_pred CEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCC-CCCCeEEEecCCcceEEccCCC------
Q 012545 318 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGY-DYLPYFYSRAFDLSWQFYGDNV------ 390 (461)
Q Consensus 318 ~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~g~~~------ 390 (461)
+|||+|||+..+....+...+++++..|..||+.||.||++.. ..+ ...++.+..+++..+..+|.++
T Consensus 275 ~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~ 349 (447)
T 1nhp_A 275 DVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV-----KPFPGVQGSSGLAVFDYKFASTGINEVMAQKL 349 (447)
T ss_dssp TEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHH
T ss_pred CEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCC-----CCCCCccccEEEEECCeeeEEecCCHHHHHHc
Confidence 9999999998765545555456789999999999999998743 222 2345666777777777778664
Q ss_pred CcEE---EecCCccc----cCCCcEEEEEEe--CCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhh-hccCCCcc
Q 012545 391 GDTV---LFGDNDLA----SATHKFGTYWIK--DGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL-KNEGLSFA 458 (461)
Q Consensus 391 ~~~~---~~~~~~~~----~~~~~~~~~~~~--~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 458 (461)
|..+ .+.+.... ....+|.|++++ +|+|+|++++|+. +.+ ++.++.+|+.+++++++..+ .-+.++|.
T Consensus 350 g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~ 429 (447)
T 1nhp_A 350 GKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFD 429 (447)
T ss_dssp TCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTC
T ss_pred CCceEEEEEEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCC
Confidence 2111 12121111 124467888873 7999999999998 766 68899999999999888765 45677766
Q ss_pred cC
Q 012545 459 SK 460 (461)
Q Consensus 459 ~~ 460 (461)
+.
T Consensus 430 e~ 431 (447)
T 1nhp_A 430 KP 431 (447)
T ss_dssp CS
T ss_pred Cc
Confidence 53
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=406.33 Aligned_cols=400 Identities=22% Similarity=0.294 Sum_probs=312.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
++||+|||||+||++||..|++.+ +..+|+|||+++..+|.++.++..+... .... . .........+.++
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~-~g~~V~vie~~~~~~~~~~~lp~~~~g~--~~~~---~----~~~~~~~~~~~~~ 105 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLS-EEDEIIMVERGEYISFANCGLPYYIGGV--ITER---Q----KLLVQTVERMSKR 105 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC-SSSEEEEECSSSCSSBCGGGHHHHHTTS--SCCG---G----GGBSSCHHHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEECCCCccccCCCCchhhcCc--CCCh---H----HhhccCHHHHHHh
Confidence 579999999999999999999983 1334999999998777654432211100 0000 0 0011233455568
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcC---CCc--EEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSA---TGL--IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~---~~~--~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
.+++++.+++|+.++.+.+.+.+. +++ ++.||++|+|||++|.+|++||+.
T Consensus 106 ~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~------------------------ 161 (588)
T 3ics_A 106 FNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIE------------------------ 161 (588)
T ss_dssp TTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTT------------------------
T ss_pred cCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcc------------------------
Confidence 899999999999999999887763 455 689999999999999655444431
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
+..++++.++..+...+...+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.
T Consensus 162 -----~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~ 235 (588)
T 3ics_A 162 -----EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVH 235 (588)
T ss_dssp -----TCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHH
T ss_pred -----cCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHH
Confidence 4567899999999998888876557899999999999999999999999999999999999987 8999999999
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh-ccccc-CCCcEEeCCCCCCCCC
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSAD 317 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~ 317 (461)
+.+++.||+++++++|++++.+ ++ .|.+.+|+++++|.||+|+|++|++++++ .++.. ++|+|.||+++||+.|
T Consensus 236 ~~l~~~GV~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~ 311 (588)
T 3ics_A 236 EHMKNHDVELVFEDGVDALEEN-GA---VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDP 311 (588)
T ss_dssp HHHHHTTCEEECSCCEEEEEGG-GT---EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSST
T ss_pred HHHHHcCCEEEECCeEEEEecC-CC---EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCC
Confidence 9999999999999999999863 22 47889999999999999999999998774 45665 5789999999999999
Q ss_pred CEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc-ccCCCcccCCCCCCeEEEecCCcceEEccCCC------
Q 012545 318 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA-TEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------ 390 (461)
Q Consensus 318 ~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------ 390 (461)
+|||+|||+..+....|.....+.+..|..||+.||+||++ .. ......+|..+..+++..+..+|.++
T Consensus 312 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~ 387 (588)
T 3ics_A 312 HIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTD----SLYKGTLGTSVAKVFDLTVATTGLNEKILKRL 387 (588)
T ss_dssp TEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCS----SCCCCBCCCEEEEETTEEEEEEECCHHHHHHT
T ss_pred CEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCc----cccCCcccceEEEECCeEEEEecCCHHHHHHc
Confidence 99999999987765556555567899999999999999997 32 12234566666666777777788765
Q ss_pred CcEE---EecCCcc----ccCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhhc
Q 012545 391 GDTV---LFGDNDL----ASATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKN 452 (461)
Q Consensus 391 ~~~~---~~~~~~~----~~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l~~ 452 (461)
|..+ .+..... ...+.+|+|+++ ++|+|||+|++|+. +++ ++.++.+|++++|++||..+.-
T Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~~ 460 (588)
T 3ics_A 388 NIPYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLEL 460 (588)
T ss_dssp TCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCCC
T ss_pred CCCeEEEEEecCCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhhh
Confidence 2211 1111111 123467888888 58999999999974 666 7999999999999999776543
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-48 Score=393.93 Aligned_cols=404 Identities=21% Similarity=0.299 Sum_probs=308.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
++||+|||||+||++||..|++. |.+ |+|||+++..+|.++.++. ++... ..... .......+++
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~-~~~~~--------~l~~~~~~~~ 102 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENAN---VVTLEKGEIYSYAQCGLPY-VISGA-IASTE--------KLIARNVKTF 102 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEECSSSCCSBCGGGHHH-HHTTS-SSCGG--------GGBSSCHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCCCCCCcch-hhcCC-cCCHH--------HhhhcCHHHH
Confidence 36999999999999999999997 544 9999999876666543321 11110 00000 0112345556
Q ss_pred -HHcCcEEEcCCeEEEEeCCCCEEEcCC---Cc--EEecCEEEEccCCCccccccccccccCccccccccCCcccccccc
Q 012545 83 -KEKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRL 156 (461)
Q Consensus 83 -~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~ 156 (461)
+..+++++.+++++.++.+.+.+.+.+ |+ ++.||++|+|||++|.+|++
T Consensus 103 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i------------------------- 157 (480)
T 3cgb_A 103 RDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEW------------------------- 157 (480)
T ss_dssp HHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC-------------------------
T ss_pred HhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCC-------------------------
Confidence 445999999989999999888877643 65 79999999999999955444
Q ss_pred cCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHH
Q 012545 157 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 236 (461)
Q Consensus 157 ~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~ 236 (461)
+|.+.++++++++.+++.++.+.+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+
T Consensus 158 -----~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~ 231 (480)
T 3cgb_A 158 -----EGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAE 231 (480)
T ss_dssp -----BTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-SCHHHHH
T ss_pred -----CCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-CCHHHHH
Confidence 4444456888899999998888776556899999999999999999999999999999999998885 7999999
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKT 314 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t 314 (461)
.+.+.+++.||+++++++|+++.. ++.+..+.+++ .++++|.||+|+|++|+.++++. ++.. .+|+|.||+++||
T Consensus 232 ~l~~~l~~~Gv~i~~~~~v~~i~~--~~~v~~v~~~~-~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~t 308 (480)
T 3cgb_A 232 YIYKEADKHHIEILTNENVKAFKG--NERVEAVETDK-GTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQT 308 (480)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEE--SSBEEEEEETT-EEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBC
T ss_pred HHHHHHHHcCcEEEcCCEEEEEEc--CCcEEEEEECC-CEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccC
Confidence 999999999999999999999987 45555566654 58999999999999999987754 4555 5789999999999
Q ss_pred CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC-CCCeEEEecCCcceEEccCCCC--
Q 012545 315 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNVG-- 391 (461)
Q Consensus 315 ~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~~-- 391 (461)
+.|+|||+|||+..+....+...+++++..|..||+.||.||++.. ..|. ..++.+..+++..+..+|.++.
T Consensus 309 s~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a 383 (480)
T 3cgb_A 309 NVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKR-----RAFKGTLGTGIIKFMNLTLARTGLNEKEA 383 (480)
T ss_dssp SSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHH
T ss_pred CCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCC-----ccCCCccceeEEEECCcEEEEeCCCHHHH
Confidence 9999999999998765544554455789999999999999999743 2232 2234456667777777786642
Q ss_pred ----cEE---EecCCccc----cCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhh-hccCC
Q 012545 392 ----DTV---LFGDNDLA----SATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL-KNEGL 455 (461)
Q Consensus 392 ----~~~---~~~~~~~~----~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l-~~~~~ 455 (461)
..+ .+...... ....+|.|+++ ++|+|+|++++|+. +.+ ++.++.+|+++++++++..+ .-+.+
T Consensus 384 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~P 463 (480)
T 3cgb_A 384 KGLHIPYKTVKVDSTNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAP 463 (480)
T ss_dssp HHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCT
T ss_pred HHcCCceEEEEEecCCcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCC
Confidence 111 11111111 12446888887 47999999999998 777 68999999999999998765 34666
Q ss_pred CcccC
Q 012545 456 SFASK 460 (461)
Q Consensus 456 ~~~~~ 460 (461)
+|.+.
T Consensus 464 t~~e~ 468 (480)
T 3cgb_A 464 PYNSV 468 (480)
T ss_dssp TTCCS
T ss_pred CCCCc
Confidence 76653
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-48 Score=382.51 Aligned_cols=370 Identities=21% Similarity=0.296 Sum_probs=286.6
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCC-CCHh
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGER-LLPE 80 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (461)
|+..+||+|||||+||++||..|++.|. +.+|+|+|+++...|.++.++..+....... .... ....
T Consensus 1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~ 68 (384)
T 2v3a_A 1 MSERAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGFSKNKDAD-----------GLAMAEPGA 68 (384)
T ss_dssp ---CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTTTTTCCHH-----------HHEEECHHH
T ss_pred CCCCCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHHhCCCCHH-----------HhhccCHHH
Confidence 3456899999999999999999999885 3459999999766666554443221110000 0011 2355
Q ss_pred HHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCC
Q 012545 81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFG 160 (461)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (461)
++++.+++++.++++..++.+.+.+.+.++ ++.||++|+|||++|.+|+
T Consensus 69 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~d~lviAtG~~p~~p~------------------------------ 117 (384)
T 2v3a_A 69 MAEQLNARILTHTRVTGIDPGHQRIWIGEE-EVRYRDLVLAWGAEPIRVP------------------------------ 117 (384)
T ss_dssp HHHHTTCEEECSCCCCEEEGGGTEEEETTE-EEECSEEEECCCEEECCCC------------------------------
T ss_pred HHHhCCcEEEeCCEEEEEECCCCEEEECCc-EEECCEEEEeCCCCcCCCC------------------------------
Confidence 667889999998889999988888888654 6999999999999995443
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
++|.+.+++++++++.++..+.+.+. .+++++|+|+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+
T Consensus 118 i~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~ 195 (384)
T 2v3a_A 118 VEGDAQDALYPINDLEDYARFRQAAA--GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQA 195 (384)
T ss_dssp CBSTTTTCEEECSSHHHHHHHHHHHT--TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHH
T ss_pred CCCcCcCCEEEECCHHHHHHHHHhhc--cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHH
Confidence 44444467899999999988877775 4799999999999999999999999999999999999887669999999999
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh-cccccCCCcEEeCCCCCCCCCCE
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDV 319 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~v 319 (461)
.+++.||+++++++|++++.+++ ...+++.+|+++++|.||+|+|++|+.++++ .++..++| |.||+++||+.|+|
T Consensus 196 ~l~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~I 272 (384)
T 2v3a_A 196 GLEGLGVRFHLGPVLASLKKAGE--GLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANI 272 (384)
T ss_dssp HHHTTTCEEEESCCEEEEEEETT--EEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTE
T ss_pred HHHHcCCEEEeCCEEEEEEecCC--EEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCE
Confidence 99999999999999999987322 3578889999999999999999999998764 45666666 99999999999999
Q ss_pred EEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCCc---EEEe
Q 012545 320 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---TVLF 396 (461)
Q Consensus 320 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~---~~~~ 396 (461)
||+|||+..... ..+++..|..||+.+|+||++.. ....|..+|+.+.+ +++.+...|..... ....
T Consensus 273 yA~GD~~~~~~~------~~~~~~~a~~~g~~~a~~i~g~~---~~~~~~~~p~~~~~-~~~~~~~~g~~~~~~~~~~~~ 342 (384)
T 2v3a_A 273 YALGDCAEVDGL------NLLYVMPLMACARALAQTLAGNP---SQVAYGPMPVTVKT-PACPLVVSPPPRGMDGQWLVE 342 (384)
T ss_dssp EECGGGEEETTB------CCCSHHHHHHHHHHHHHHHTTCC---CCCCCCCCCEEECC-TTSCEEEECCCTTCCCEEEEE
T ss_pred EEeeeeeeECCC------CcchHHHHHHHHHHHHHHhcCCC---ccCCCCCcceEEEE-CCeeEEEecCCCCCCceEEEE
Confidence 999999975322 12578889999999999999753 22456678886654 34556666754321 2222
Q ss_pred cCCccccCCCcEEEEEE-eCCEEEEEEEecCCHHHHHHHH
Q 012545 397 GDNDLASATHKFGTYWI-KDGKVVGVFLESGTPEENKAIA 435 (461)
Q Consensus 397 ~~~~~~~~~~~~~~~~~-~~~~i~G~~~~g~~~~~~~~~~ 435 (461)
++ ..+|.++++ ++|+|+|++++|+.+.|+..+.
T Consensus 343 ~~------~~g~~~~~~~~~~~i~G~~~~g~~a~e~~~~~ 376 (384)
T 2v3a_A 343 GS------GTDLKVLCRDTAGRVIGYALTGAAVNEKLALN 376 (384)
T ss_dssp EE------TTEEEEEEECTTSCEEEEEEEGGGGGGHHHHH
T ss_pred ec------CCcEEEEEEccCCEEEEEEEECcchHHHHHHH
Confidence 22 346777777 4899999999999998854443
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-48 Score=379.91 Aligned_cols=353 Identities=24% Similarity=0.383 Sum_probs=274.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..|++|||||+||++||..|++.| + |+|||+++..+|.++.+++.+. .. .... .......+++++
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~---V~lie~~~~~~~~~~~l~~~~~-g~--~~~~--------~~~~~~~~~~~~ 72 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-E---VTVIDKEPVPYYSKPMLSHYIA-GF--IPRN--------RLFPYSLDWYRK 72 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-E---EEEECSSSSCCCCSTTHHHHHT-TS--SCGG--------GGCSSCHHHHHH
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-C---EEEEECCCCCccccchhHHHHh-CC--CCHH--------HhccCCHHHHHh
Confidence 369999999999999999999987 5 9999999887787776654321 10 0000 112346778889
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.+++++.+++|+.++++.+.|. .+++++.||+||||||++|.+|+ +||
T Consensus 73 ~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~p~------------------------------i~G- 120 (367)
T 1xhc_A 73 RGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAREPQ------------------------------IKG- 120 (367)
T ss_dssp HTEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECCCC------------------------------SBT-
T ss_pred CCcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCCCC------------------------------CCC-
Confidence 9999999988999999888888 67788999999999999995443 344
Q ss_pred CCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHh
Q 012545 165 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 244 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (461)
.++++++++.+++.++++.+. ++++++|||+|++|+|+|..|++.|.+|+++++.+++++ +++++.+.+.+.+++
T Consensus 121 -~~~v~~~~~~~~~~~l~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~ 195 (367)
T 1xhc_A 121 -KEYLLTLRTIFDADRIKESIE--NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEE 195 (367)
T ss_dssp -GGGEECCCSHHHHHHHHHHHH--HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHH
T ss_pred -cCCEEEEcCHHHHHHHHHHhh--cCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHH
Confidence 245778888999988877764 258999999999999999999999999999999999888 799999999999999
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEeC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVG 323 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~G 323 (461)
.||+++++++|++++. + .+++++|+ +++|.||+|+|++|++++++. ++..+ ++|.||+++||+.|+|||+|
T Consensus 196 ~gV~i~~~~~v~~i~~--~----~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~G 267 (367)
T 1xhc_A 196 TGVKFFLNSELLEANE--E----GVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIG 267 (367)
T ss_dssp TTEEEECSCCEEEECS--S----EEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECG
T ss_pred CCCEEEcCCEEEEEEe--e----EEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeE
Confidence 9999999999999962 2 47788887 999999999999999987643 45555 45999999999999999999
Q ss_pred cccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC-CeEEEecCCcceEEccCCCCcEEEecCCccc
Q 012545 324 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGDTVLFGDNDLA 402 (461)
Q Consensus 324 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 402 (461)
||+...... .+.+..|..||+.||.||.+.. ..|... |+.+..+++..+..+|.++.+...+
T Consensus 268 D~a~~~~~~------~~~~~~A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~------ 330 (367)
T 1xhc_A 268 DCAEYSGII------AGTAKAAMEQARVLADILKGEP-----RRYNFKFRSTVFKFGKLQIAIIGNTKGEGKWI------ 330 (367)
T ss_dssp GGEEBTTBC------CCSHHHHHHHHHHHHHHHTTCC-----CCCCSSCCEEEEEETTEEEEEEECCSSCEEEE------
T ss_pred eeeecCCCC------ccHHHHHHHHHHHHHHHhcCCC-----ccCCCCCCceEEEECCceEEEECCCCCCCccc------
Confidence 999753221 1578899999999999999753 344443 4434567777888889876543221
Q ss_pred cCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHH
Q 012545 403 SATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVA 438 (461)
Q Consensus 403 ~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~ 438 (461)
.+|.|+++++|+|+|++++|+.+. ...+..+|
T Consensus 331 ---~~~~k~~~~~~~ilG~~~~g~~~~-~~~~~~~i 362 (367)
T 1xhc_A 331 ---EDNTKVFYENGKIIGAVVFNDIRK-ATKLEKEI 362 (367)
T ss_dssp ---ETTEEEEC-----CEEEEESCHHH-HHHHC---
T ss_pred ---ceEEEEEEECCEEEEEEEECChHH-HHHHHHHH
Confidence 468888888899999999996544 44344433
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-48 Score=394.50 Aligned_cols=409 Identities=23% Similarity=0.335 Sum_probs=304.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCC--------CCCCceeec--CC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA--------RLPGFHVCV--GS 72 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~~ 72 (461)
+..+||||||||+||++||..|++.+. ..+|+|||+++..+|.+|++++.++...... .++...... ..
T Consensus 9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (493)
T 1m6i_A 9 PSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP 87 (493)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred CCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccc
Confidence 346899999999999999999998842 3459999999988999998888776543210 000000000 00
Q ss_pred -CCCCCCHhH--HHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCc
Q 012545 73 -GGERLLPEW--YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLP 149 (461)
Q Consensus 73 -~~~~~~~~~--~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p 149 (461)
........+ +.+.+++++.+++|+.++.+.++|.+.+|+++.||+||||||++|..|+++|..
T Consensus 88 ~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~-------------- 153 (493)
T 1m6i_A 88 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRA-------------- 153 (493)
T ss_dssp GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTS--------------
T ss_pred hHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccc--------------
Confidence 000000111 135689999999999999988999999998999999999999998433222210
Q ss_pred ccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHH----CCCcEEEEccCCcc
Q 012545 150 LFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI----NNIDVSMVYPEPWC 225 (461)
Q Consensus 150 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~----~g~~Vtli~~~~~~ 225 (461)
......+++.+++.+++..+.+.+. .+++++|||+|++|+|+|..|++ .|.+|+++++.+.+
T Consensus 154 ------------~~~~~~~v~~~~~~~d~~~l~~~~~--~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~ 219 (493)
T 1m6i_A 154 ------------GAEVKSRTTLFRKIGDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN 219 (493)
T ss_dssp ------------CHHHHHTEEECCSHHHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred ------------cccccCceEEEcCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc
Confidence 0000246888899999988887765 47899999999999999999987 47899999998887
Q ss_pred CCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh-cccccC--
Q 012545 226 MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAEN-- 302 (461)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~-~~~~~~-- 302 (461)
+.+.+++++.+.+.+.++++||+++++++|++++.+ ++. ..|++.+|++++||.||+|+|++||+++++ .++..+
T Consensus 220 ~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~-~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~ 297 (493)
T 1m6i_A 220 MGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGK-LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSD 297 (493)
T ss_dssp TTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTT
T ss_pred ccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCe-EEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccC
Confidence 777789999999999999999999999999999862 333 478899999999999999999999998774 356554
Q ss_pred CCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecC-Cc
Q 012545 303 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DL 381 (461)
Q Consensus 303 ~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~-~~ 381 (461)
+|+|.||++||| .|+|||+|||+..+....+.. ++++|..|..||+.||.||++.. .+|...|+||+..+ +.
T Consensus 298 ~ggi~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~-----~~~~~~~~~~s~~~~~~ 370 (493)
T 1m6i_A 298 FGGFRVNAELQA-RSNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAA-----KPYWHQSMFWSDLGPDV 370 (493)
T ss_dssp TCSEECCTTCEE-ETTEEECGGGEEEEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCC-----CCCCCCCEEEEESSTTC
T ss_pred CCcEEECCCccc-CCCeeEeeeeEeccCcccCcc-ccchHHHHHHHHHHHHHHhcCCC-----CCcCCcCceeeeeccCc
Confidence 589999999998 699999999998765544432 56789999999999999999753 67888999999886 44
Q ss_pred ceEEccCCC------CcEE------------------Eec-------------------CC--cc-ccCCCcEEEEEEeC
Q 012545 382 SWQFYGDNV------GDTV------------------LFG-------------------DN--DL-ASATHKFGTYWIKD 415 (461)
Q Consensus 382 ~~~~~g~~~------~~~~------------------~~~-------------------~~--~~-~~~~~~~~~~~~~~ 415 (461)
.+..+|... |... ..+ +. +. .....+|..+|+++
T Consensus 371 ~~~~~g~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (493)
T 1m6i_A 371 GYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRD 450 (493)
T ss_dssp EEEEEECCCTTSCEEEEEECCCTTCSHHHHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEET
T ss_pred ceEEEeccCCCcceEEeecccccccccccccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeC
Confidence 444333210 1000 000 00 00 01123456688899
Q ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhh
Q 012545 416 GKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 450 (461)
Q Consensus 416 ~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 450 (461)
|+|+|+.++| .+..+..+..+|+.+.++.++..+
T Consensus 451 ~~~~g~~~~~-~~~~~~~~~~li~~~~~~~~~~~~ 484 (493)
T 1m6i_A 451 KVVVGIVLWN-IFNRMPIARKIIKDGEQHEDLNEV 484 (493)
T ss_dssp TEEEEEEEES-CCSCHHHHHHHHHHCCBCSCSTTG
T ss_pred CEEEEEEEec-CcchHHHHHHHHhCCCCCCCHHHH
Confidence 9999999997 557788899999999998887654
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=391.07 Aligned_cols=400 Identities=16% Similarity=0.230 Sum_probs=287.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-C-CCCc-ccccccCCC----CCCCCCCceeec-----C
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-Y-ERPA-LSKAYLFPE----GTARLPGFHVCV-----G 71 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~-~~~~-~~~~~~~~~----~~~~~~~~~~~~-----~ 71 (461)
+.+||+|||||+||++||..|++.|.+ |+|||+++... + ...| .++.++... .......+.... .
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 86 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAK---TLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK 86 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCc---EEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence 468999999999999999999999887 99999985311 0 0011 111111000 000000000000 0
Q ss_pred --CCC----------------CCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcccc-c
Q 012545 72 --SGG----------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVSIT-S 130 (461)
Q Consensus 72 --~~~----------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~-~ 130 (461)
... .......+++.+++++.+ .+..++.....+.+.+++ ++.||+||+|||++|.+| +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~ 165 (479)
T 2hqm_A 87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPEN 165 (479)
T ss_dssp GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTT
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCC
Confidence 000 001123455689999988 566666544456556665 799999999999999666 5
Q ss_pred cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHH
Q 012545 131 LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 210 (461)
Q Consensus 131 ~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~ 210 (461)
+||+. .+ .+.+++..+ ...+++++|||+|++|+|+|..|.
T Consensus 166 i~g~~--------------------------------~~---~~~~~~~~l-----~~~~~~vvViGgG~ig~E~A~~l~ 205 (479)
T 2hqm_A 166 IPGFE--------------------------------LG---TDSDGFFRL-----EEQPKKVVVVGAGYIGIELAGVFH 205 (479)
T ss_dssp STTGG--------------------------------GS---BCHHHHHHC-----SSCCSEEEEECSSHHHHHHHHHHH
T ss_pred CCCcc--------------------------------cc---cchHHHhcc-----cccCCeEEEECCCHHHHHHHHHHH
Confidence 55531 01 122333222 125789999999999999999999
Q ss_pred HCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cEEecCEEEEccCCC
Q 012545 211 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGR 289 (461)
Q Consensus 211 ~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~~ 289 (461)
+.|.+|+++++.+++++. +++++.+.+.+.|++.||+++++++|++++.++++....+++++| +++++|.||+|+|++
T Consensus 206 ~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~ 284 (479)
T 2hqm_A 206 GLGSETHLVIRGETVLRK-FDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRK 284 (479)
T ss_dssp HTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEE
T ss_pred HcCCceEEEEeCCccccc-cCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCC
Confidence 999999999999999986 899999999999999999999999999998744443457888999 889999999999999
Q ss_pred CChhh-hh-ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC-Ccc
Q 012545 290 PLISL-FK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG-KTV 365 (461)
Q Consensus 290 p~~~~-~~-~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~ 365 (461)
||+.+ ++ .++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||++.... ...
T Consensus 285 p~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (479)
T 2hqm_A 285 SHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGKV----------ELTPVAIAAGRKLSNRLFGPEKFRNDK 354 (479)
T ss_dssp ECCCSSGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGTTSS----------CCHHHHHHHHHHHHHHHHSCGGGTTCC
T ss_pred CccccChhhcCceECCCCCEeECCCCccCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHhcCCCccCccc
Confidence 99965 43 45666 5789999999999999999999998754 46788999999999999975310 112
Q ss_pred cCCCCCCeEEEecCCcceEEccCCC-------C-cEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCC
Q 012545 366 TGYDYLPYFYSRAFDLSWQFYGDNV-------G-DTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGT 427 (461)
Q Consensus 366 ~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~ 427 (461)
..|..+|+..++.+++..+ |.++ | ..+. +...... ..+.+|.|+++ ++|+|||++++|+.
T Consensus 355 ~~~~~~p~~~~~~~~~~~v--Gl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~ 432 (479)
T 2hqm_A 355 LDYENVPSVIFSHPEAGSI--GISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDS 432 (479)
T ss_dssp CCCTTCCEEECCSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCCCCCCeEEECCCCeEEE--eCCHHHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 5667788877666665555 5443 2 1121 1111111 23567889888 47999999999999
Q ss_pred HHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 428 PEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 428 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
+.+ ++.++.+|+++++++|+..+.-+.+++++.
T Consensus 433 a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 466 (479)
T 2hqm_A 433 SAEILQGFGVAIKMGATKADFDNCVAIHPTSAEE 466 (479)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred HHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHH
Confidence 888 689999999999999988887788777654
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=394.64 Aligned_cols=399 Identities=20% Similarity=0.252 Sum_probs=287.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCcccccccCCCC-------CCC---CCCcee
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEG-------TAR---LPGFHV 68 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~-------~~~---~~~~~~ 68 (461)
+..+||+|||||++|++||.+|++.|++ |+|||+++... +..+..++.++.... ... ++.+..
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~ 117 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTE 117 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTT
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHh
Confidence 3568999999999999999999999987 99999997321 111111121110000 000 000000
Q ss_pred e------cCCCCCCCCH---hHH-----HHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccc
Q 012545 69 C------VGSGGERLLP---EWY-----KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 69 ~------~~~~~~~~~~---~~~-----~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
. .......... .++ ++.++++++..++..++. +.+.+. ++++.||++|+|||++|.+|++||
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~p~i~G- 193 (523)
T 1mo9_A 118 KVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGTLDVPG- 193 (523)
T ss_dssp CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCCCCSTT-
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCCCCCCC-
Confidence 0 0000000022 555 778999984457888774 567765 677999999999999996554444
Q ss_pred cccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC
Q 012545 135 RSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 214 (461)
Q Consensus 135 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~ 214 (461)
.+..++++.. ++. +.++..++++++|||+|++|+|+|..|.+.|.
T Consensus 194 -----------------------------~~~~~v~~~~---~~~---~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~ 238 (523)
T 1mo9_A 194 -----------------------------VNAKGVFDHA---TLV---EELDYEPGSTVVVVGGSKTAVEYGCFFNATGR 238 (523)
T ss_dssp -----------------------------TTSBTEEEHH---HHH---HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred -----------------------------cccCcEeeHH---HHH---HHHHhcCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3334466432 222 12222233899999999999999999999999
Q ss_pred cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCE--EEEEeCCCc-EEecCEEEEccCCCCC
Q 012545 215 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV--KEVKLKDGR-TLEADIVVVGVGGRPL 291 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~--~~v~~~~G~-~i~aD~vi~a~G~~p~ 291 (461)
+|+++++.+++++. +++++.+.+.+.+++.||+++++++|+++..++++.+ ..|++++|+ ++++|.||+|+|++|+
T Consensus 239 ~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~ 317 (523)
T 1mo9_A 239 RTVMLVRTEPLKLI-KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR 317 (523)
T ss_dssp EEEEECSSCTTTTC-CSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEEC
T ss_pred eEEEEEecCccccc-ccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccC
Confidence 99999999999987 7999999999999999999999999999987445543 467888887 8999999999999999
Q ss_pred hh-hhh-ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCC
Q 012545 292 IS-LFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGY 368 (461)
Q Consensus 292 ~~-~~~-~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 368 (461)
++ +++ .++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||++.. ....|
T Consensus 318 ~~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~ 384 (523)
T 1mo9_A 318 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEK---ISYTP 384 (523)
T ss_dssp CHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCC---CCCCC
T ss_pred CccCHHHcCCccCCCCCEEECCCCccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCC---CCCCC
Confidence 98 564 45666 5788999999999999999999999865 457789999999999999743 12346
Q ss_pred CCCCeEEEecCCcceEEccCCC------CcEEEec--CCcc--------------------c--cCCCcEEEEEE--eCC
Q 012545 369 DYLPYFYSRAFDLSWQFYGDNV------GDTVLFG--DNDL--------------------A--SATHKFGTYWI--KDG 416 (461)
Q Consensus 369 ~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~--~~~~--------------------~--~~~~~~~~~~~--~~~ 416 (461)
..+|+++++.+++. .+|.++ |..+... .... . ....+|.|+++ ++|
T Consensus 385 ~~~p~~~~~~~~~a--~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 462 (523)
T 1mo9_A 385 KNYPDFLHTHYEVS--FLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTR 462 (523)
T ss_dssp CSCCEEEESSSEEE--EEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTC
T ss_pred CCCCeEEECCCceE--EEeCCHHHHHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCC
Confidence 77898877666544 446553 2222221 1110 0 23457899888 479
Q ss_pred EEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhh--hccCCCccc
Q 012545 417 KVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVL--KNEGLSFAS 459 (461)
Q Consensus 417 ~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~ 459 (461)
+|+|+|++|+.+.+ ++.++.+|+.+++++|+..+ .-+.+++.+
T Consensus 463 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~~Pt~~e 508 (523)
T 1mo9_A 463 KVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFI 508 (523)
T ss_dssp BEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHH
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHhCCcceECCCHHH
Confidence 99999999998777 69999999999999888776 555565543
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=375.76 Aligned_cols=396 Identities=19% Similarity=0.194 Sum_probs=285.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCC----CC-CCCCceeecC---
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TA-RLPGFHVCVG--- 71 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~-~~~~~~~~~~--- 71 (461)
++.+||+|||||+||++||..|++.|++ |+|||++.... +..|.+++.++.... .. ..+.+.....
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T 1ges_A 2 TKHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK 78 (450)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCe---EEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 4579999999999999999999998887 99999984311 000111111111000 00 0000000000
Q ss_pred CC--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccccccc
Q 012545 72 SG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSK 137 (461)
Q Consensus 72 ~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~ 137 (461)
.. ........+++.+++++.+ .+..++. +.+.+ +++++.||++|+|||++|.+|++||+.
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~i~g~~-- 152 (450)
T 1ges_A 79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPSHPDIPGVE-- 152 (450)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEECCCCSTTGG--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCCCCCCCCcc--
Confidence 00 0001123346689999998 4555653 56777 677899999999999999766655531
Q ss_pred CccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 012545 138 HCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS 217 (461)
Q Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vt 217 (461)
.+ .+.+++..+ . ..+++++|||+|++|+|+|..|++.|.+|+
T Consensus 153 ------------------------------~~---~~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vt 194 (450)
T 1ges_A 153 ------------------------------YG---IDSDGFFAL----P-ALPERVAVVGAGYIGVELGGVINGLGAKTH 194 (450)
T ss_dssp ------------------------------GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred ------------------------------ce---ecHHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHhcCCEEE
Confidence 11 123333322 1 147899999999999999999999999999
Q ss_pred EEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh--h
Q 012545 218 MVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--F 295 (461)
Q Consensus 218 li~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~--~ 295 (461)
++++.+++++. +++++.+.+.+.+++.||+++++++|++++.++++. ..+++++|+++++|.||+|+|++|+++. +
T Consensus 195 lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~ 272 (450)
T 1ges_A 195 LFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINL 272 (450)
T ss_dssp EECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCH
T ss_pred EEEeCCchhhh-hhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCc
Confidence 99999998886 899999999999999999999999999998743333 4688899999999999999999999973 3
Q ss_pred -hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCe
Q 012545 296 -KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY 373 (461)
Q Consensus 296 -~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~ 373 (461)
..++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||++.... ....|..+|+
T Consensus 273 ~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~ 341 (450)
T 1ges_A 273 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKPD-EHLDYSNIPT 341 (450)
T ss_dssp HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCTT-CCCCCSSCCE
T ss_pred hhcCceECCCCCEeECCCCccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCCc-ccCCCCCCCe
Confidence 345666 4788999999999999999999998754 46788999999999999974321 1146777898
Q ss_pred EEEecCCcceEEccCCC-------C-cEEEec-----CCcc---ccCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHH
Q 012545 374 FYSRAFDLSWQFYGDNV-------G-DTVLFG-----DNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAI 434 (461)
Q Consensus 374 ~~~~~~~~~~~~~g~~~-------~-~~~~~~-----~~~~---~~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~ 434 (461)
.+++.+++..+ |.++ | ..+... .... .....+|.|+++ ++|+|+|+|++|+++.+ ++.+
T Consensus 342 ~~~~~~~~a~v--G~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~ 419 (450)
T 1ges_A 342 VVFSHPPIGTV--GLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGF 419 (450)
T ss_dssp EECCSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHH
T ss_pred EEECCCceEEE--eCCHHHHHhcCCCCcEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHH
Confidence 77766665555 5432 2 112111 1010 123456888887 48999999999999888 6899
Q ss_pred HHHHHcCCCCCChhhhhccCCCcccC
Q 012545 435 AKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
+.+|+.+++++||..+.-+.+++++.
T Consensus 420 ~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T 1ges_A 420 AVALKMGATKKDFDNTVAIHPTAAEE 445 (450)
T ss_dssp HHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred HHHHHCCCCHHHHhcCccCCCChHHH
Confidence 99999999999988888888877664
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=384.47 Aligned_cols=398 Identities=18% Similarity=0.211 Sum_probs=286.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCC----CCCCCCCceeecCCC---
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGFHVCVGSG--- 73 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--- 73 (461)
..+||+|||||+||++||..|++.|++ |+|||++.... +..|..++.++... .......+.......
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~---V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGAR---AAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN 95 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 469999999999999999999999987 99999875311 00011111111000 000000000000000
Q ss_pred --------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccc---ccccccc
Q 012545 74 --------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSIT---SLTSIRS 136 (461)
Q Consensus 74 --------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~---~~~g~~~ 136 (461)
........++..+++++.+ .+..++.....+. .+++++.||++|+|||++|.+| ++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~- 172 (478)
T 3dk9_A 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS- 172 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc-
Confidence 0001223345679999998 5666665556666 4667799999999999999776 666643
Q ss_pred cCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 012545 137 KHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDV 216 (461)
Q Consensus 137 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~V 216 (461)
.+ .+.++...+ ...+++++|||+|++|+|+|..|++.|.+|
T Consensus 173 -~~---------------------------------~~~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~V 213 (478)
T 3dk9_A 173 -LG---------------------------------ITSDGFFQL-----EELPGRSVIVGAGYIAVEMAGILSALGSKT 213 (478)
T ss_dssp -GS---------------------------------BCHHHHTTC-----CSCCSEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred -ee---------------------------------EchHHhhch-----hhcCccEEEECCCHHHHHHHHHHHHcCCeE
Confidence 01 112222111 113789999999999999999999999999
Q ss_pred EEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-------CcEEecCEEEEccCCC
Q 012545 217 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-------GRTLEADIVVVGVGGR 289 (461)
Q Consensus 217 tli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-------G~~i~aD~vi~a~G~~ 289 (461)
+++++.+++++. +++++.+.+.+.|++.||++++++++++++.++++....+.+.+ |+++++|.||+|+|++
T Consensus 214 tlv~~~~~~l~~-~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~ 292 (478)
T 3dk9_A 214 SLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRV 292 (478)
T ss_dssp EEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEE
T ss_pred EEEEeCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccc
Confidence 999999999976 89999999999999999999999999999875455334677765 2679999999999999
Q ss_pred CChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcc
Q 012545 290 PLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV 365 (461)
Q Consensus 290 p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 365 (461)
|+++.+ ..++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||++.... ..
T Consensus 293 p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~ 361 (478)
T 3dk9_A 293 PNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYKED-SK 361 (478)
T ss_dssp ESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHHSCCTT-CC
T ss_pred cCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHcCCCCc-cc
Confidence 999832 345666 6789999999999999999999999655 46788999999999999976321 23
Q ss_pred cCCCCCCeEEEecCCcceEEccCCC-------C-cEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCC
Q 012545 366 TGYDYLPYFYSRAFDLSWQFYGDNV-------G-DTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGT 427 (461)
Q Consensus 366 ~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~ 427 (461)
..|..+|+..++.++++.+ |.++ + ..+ .+.....+ ..+.+|.|+++ ++|+|||+|++|++
T Consensus 362 ~~~~~~p~~~~~~p~~a~v--Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~ 439 (478)
T 3dk9_A 362 LDYNNIPTVVFSHPPIGTV--GLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLG 439 (478)
T ss_dssp CCCTTCCEEECCSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCCCCCCeEEECCCceEEe--eCCHHHHHhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 5778889877766665555 5544 1 111 12211111 23567899887 57999999999999
Q ss_pred HHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 428 PEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 428 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
+.+ ++.++.+|+++++++||..+.-+.+++++.
T Consensus 440 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 473 (478)
T 3dk9_A 440 CDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEE 473 (478)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSGGG
T ss_pred HHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHH
Confidence 888 689999999999999988888888777664
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-47 Score=384.07 Aligned_cols=397 Identities=21% Similarity=0.248 Sum_probs=288.5
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCC----CCCCCCCceeecCC-
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGFHVCVGS- 72 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~- 72 (461)
|++..+||+|||||++|++||..|++.|++ |+|||++.... +..|..++.++... .....+.+......
T Consensus 1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~ 77 (463)
T 4dna_A 1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKK---VAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGES 77 (463)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCC
T ss_pred CCCCCCcEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 555579999999999999999999999987 99999954211 00011111110000 00000000000000
Q ss_pred ----------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEc-CCCcEEecCEEEEccCCCcc-ccccccc
Q 012545 73 ----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVS-ITSLTSI 134 (461)
Q Consensus 73 ----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~liiAtG~~~~-~~~~~g~ 134 (461)
........++++.+++++.+ .+..+ +.+.+.+ .+++++.||++|+|||+.|. +|.+||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i--~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~ 154 (463)
T 4dna_A 78 RFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELA--GPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGH 154 (463)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEES--SSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTG
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEe--eCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCc
Confidence 00011233455679999998 55554 3567777 56778999999999999997 7666664
Q ss_pred cccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC
Q 012545 135 RSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 214 (461)
Q Consensus 135 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~ 214 (461)
.. + .+.++...+ ...+++++|+|+|++|+|+|..+.+.|.
T Consensus 155 ~~--------------------------------~---~~~~~~~~~-----~~~~~~v~ViGgG~~g~e~A~~l~~~g~ 194 (463)
T 4dna_A 155 EL--------------------------------C---ITSNEAFDL-----PALPESILIAGGGYIAVEFANIFHGLGV 194 (463)
T ss_dssp GG--------------------------------C---BCHHHHTTC-----SSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred cc--------------------------------c---ccHHHHhhh-----hcCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 21 1 122222211 1147899999999999999999999999
Q ss_pred cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE-eCCCcEEecCEEEEccCCCCChh
Q 012545 215 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK-LKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~-~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.++++. ..|+ +++|+ +++|.||+|+|++|+++
T Consensus 195 ~Vt~v~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~ 271 (463)
T 4dna_A 195 KTTLIYRGKEILSR-FDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTN 271 (463)
T ss_dssp EEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred eEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence 99999999998876 799999999999999999999999999998744443 4688 88997 99999999999999998
Q ss_pred hh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC
Q 012545 294 LF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD 369 (461)
Q Consensus 294 ~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 369 (461)
++ ..++.. ++|+|.||+++||+.|+|||+|||++.+ +.+..|..||+.||.||++.... ...|.
T Consensus 272 ~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~ 339 (463)
T 4dna_A 272 GLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRV----------QLTPVAIHEAMCFIETEYKNNPT--SPDHD 339 (463)
T ss_dssp TSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGSSC----------CCHHHHHHHHHHHHHHHHSSCCC--CCCCS
T ss_pred CCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCCCC----------CChHHHHHHHHHHHHHHcCCCCc--ccCCC
Confidence 63 345666 5789999999999999999999999854 56788999999999999976422 24677
Q ss_pred CCCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 370 YLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
.+|+.+++.+++..+ |.++ |..+.. .....+ ..+.+|.|+++ ++|+|||+|++|+++.+ ++
T Consensus 340 ~~p~~~~~~p~~a~v--G~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~ 417 (463)
T 4dna_A 340 LIATAVFSQPEIGTV--GITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQ 417 (463)
T ss_dssp CCCEEECSSSCEEEE--ECCHHHHHHHSSEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHH
T ss_pred CCCEEEECCCCeEEe--cCCHHHHHHcCCCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHH
Confidence 788877665655444 6554 322222 111111 23567899888 47999999999999888 68
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 433 AIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
.++.+|+.++|++||..+.-+.+++++.
T Consensus 418 ~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (463)
T 4dna_A 418 LLGISLRAGCTKDDFDRTMAVHPTAAEE 445 (463)
T ss_dssp HHHHHHHTTCBHHHHHTSCCCTTCSGGG
T ss_pred HHHHHHHCCCCHHHHhhcccCCCCHHHH
Confidence 9999999999999988887777777654
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=385.45 Aligned_cols=398 Identities=23% Similarity=0.289 Sum_probs=281.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCcccccccCCCCC-----CCCCCceeecCCC-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEGT-----ARLPGFHVCVGSG- 73 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~- 73 (461)
+.+||+|||||+||++||..|++.|++ |+|||+++..... .|..++.++..... ..+..+.......
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMK---VAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPK 100 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCc
Confidence 469999999999999999999999987 9999987543210 01111111110000 0000000000000
Q ss_pred ----------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCcccccccccc
Q 012545 74 ----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 74 ----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.......++++.+++++.+ .+..++.....+...+| +++.||++|+|||++| |.+||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p--~~ipg~~ 177 (491)
T 3urh_A 101 LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV--AGIPGVE 177 (491)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEEC--CCBTTBC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCC--CCCCCcc
Confidence 0011233456789999998 44445544445666666 5799999999999987 3444432
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
+ ..+...+++ ..+...+ ...+++++|||+|++|+|+|..|.+.|.+
T Consensus 178 ~--------------------------~~~~~~~~~---~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~ 223 (491)
T 3urh_A 178 V--------------------------AFDEKTIVS---STGALAL-----EKVPASMIVVGGGVIGLELGSVWARLGAK 223 (491)
T ss_dssp C--------------------------CCCSSSEEC---HHHHTSC-----SSCCSEEEEECCSHHHHHHHHHHHHHTCE
T ss_pred c--------------------------ccCCeeEEe---hhHhhhh-----hhcCCeEEEECCCHHHHHHHHHHHHcCCE
Confidence 0 011122332 2222221 12578999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCC
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p 290 (461)
|+++++.+++++. +++++.+.+.+.+++.||++++++++++++.++++ ..+.+.+ | +++++|.||+|+|++|
T Consensus 224 Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p 300 (491)
T 3urh_A 224 VTVVEFLDTILGG-MDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDG--AKVTFEPVKGGEATTLDAEVVLIATGRKP 300 (491)
T ss_dssp EEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTE--EEEEEEETTSCCCEEEEESEEEECCCCEE
T ss_pred EEEEecccccccc-CCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCE--EEEEEEecCCCceEEEEcCEEEEeeCCcc
Confidence 9999999999987 79999999999999999999999999999873333 3455542 5 5899999999999999
Q ss_pred Chhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCccc
Q 012545 291 LISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 366 (461)
Q Consensus 291 ~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 366 (461)
+++++ ..++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.+|++... ..
T Consensus 301 ~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~ 367 (491)
T 3urh_A 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP----------MLAHKAEDEGVAVAEIIAGQAG---HV 367 (491)
T ss_dssp CCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTSCC---CC
T ss_pred CCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHHcCCCc---cc
Confidence 99863 445666 5788999999999999999999999765 5688899999999999997542 25
Q ss_pred CCCCCCeEEEecCCcceEEccCCC------CcEEEecCC-----ccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH
Q 012545 367 GYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE 430 (461)
Q Consensus 367 ~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~ 430 (461)
.|..+|+..++.++ +..+|.++ |..+..... ..+ ..+.+|.|+++ ++|+|||+|++|+++.+
T Consensus 368 ~~~~~p~~~~~~p~--~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e 445 (491)
T 3urh_A 368 NYDVIPGVVYTQPE--VASVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGE 445 (491)
T ss_dssp CTTCCCEEECSSSC--EEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHH
T ss_pred CCCCCCEEEEccCC--eEEEeCCHHHHHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHH
Confidence 67778887655444 44556654 332322221 111 23568999887 47999999999999888
Q ss_pred -HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 431 -NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 431 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.++.+|++++|++||..+.-+.+++++
T Consensus 446 ~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 475 (491)
T 3urh_A 446 MIHEIAVLMEFGGSSEDLGRTCHAHPTMSE 475 (491)
T ss_dssp HHHHHHHHHHTTCBHHHHHTSCCCSSCTTH
T ss_pred HHHHHHHHHHCCCcHHHHhcCccCCCChHH
Confidence 68999999999999998887777776654
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=375.95 Aligned_cols=397 Identities=20% Similarity=0.229 Sum_probs=284.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCcccccccCCC-----------CCCCCC--Cce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPE-----------GTARLP--GFH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~-----------~~~~~~--~~~ 67 (461)
.+||+|||||+||++||..|++.|++ |+|||+++..... .+..++.++... ....++ ...
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFK---TVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVR 82 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCc
Confidence 58999999999999999999999886 9999998643110 011111111100 000000 000
Q ss_pred eecCC----------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC-C-cEEecCEEEEccCCCcccccccccc
Q 012545 68 VCVGS----------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-G-LIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 68 ~~~~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~-~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
..... .......+++++.+++++.++ +..++.....|.+.+ + +++.||+||+|||++|.+|++||+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~- 160 (474)
T 1zmd_A 83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY-GKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITI- 160 (474)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCC-
Confidence 00000 000012355667899999984 455665444566665 4 579999999999999965544442
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
+..++++ ..++..+ .. .+++++|||+|++|+|+|..|++.|.+
T Consensus 161 -----------------------------~~~~v~t---~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~ 203 (474)
T 1zmd_A 161 -----------------------------DEDTIVS---STGALSL----KK-VPEKMVVIGAGVIGVELGSVWQRLGAD 203 (474)
T ss_dssp -----------------------------CSSSEEC---HHHHTTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred -----------------------------CcCcEEc---HHHHhhc----cc-cCceEEEECCCHHHHHHHHHHHHcCCE
Confidence 2233443 3333222 11 478999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE-----eCCCcEEecCEEEEccCCCC
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK-----LKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~-----~~~G~~i~aD~vi~a~G~~p 290 (461)
|+++++.+++++..+++++.+.+.+.+++.||+++++++|++++.++++.+ .++ ..+++++++|.||+|+|++|
T Consensus 204 Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p 282 (474)
T 1zmd_A 204 VTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRP 282 (474)
T ss_dssp EEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEE
T ss_pred EEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCc
Confidence 999999999998448999999999999999999999999999987433322 444 35677899999999999999
Q ss_pred Chhh--h-hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCccc
Q 012545 291 LISL--F-KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 366 (461)
Q Consensus 291 ~~~~--~-~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 366 (461)
++++ + +.++.. .+|+|.||+++||+.|+|||+|||+..+ ..+..|..||+.||.||++.. ...
T Consensus 283 ~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~ 349 (474)
T 1zmd_A 283 FTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP----------MLAHKAEDEGIICVEGMAGGA---VHI 349 (474)
T ss_dssp CCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTCC---CCC
T ss_pred CCCcCCchhcCCccCCCCCEEECcCCccCCCCEEEeeecCCCC----------ccHHHHHHHHHHHHHHhcCCC---CcC
Confidence 9986 3 345665 4688999999999999999999999865 457789999999999999753 124
Q ss_pred CCCCCCeEEEecCCcceEEccCCC------CcEEEecC-----Cccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHH
Q 012545 367 GYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA---SATHKFGTYWIK--DGKVVGVFLESGTPEE 430 (461)
Q Consensus 367 ~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~~--~~~i~G~~~~g~~~~~ 430 (461)
.|..+|+++++.++ +..+|.++ |..+.... .... ....+|.|++++ +|+|+|++++|+.+.+
T Consensus 350 ~~~~~p~~~~~~~~--~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~ 427 (474)
T 1zmd_A 350 DYNCVPSVIYTHPE--VAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGE 427 (474)
T ss_dssp CGGGCCEEECSSSE--EEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHH
T ss_pred CCCCCCEEEECCCC--eEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHH
Confidence 56778887655454 45556654 22222211 1111 235679998885 7999999999999877
Q ss_pred -HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 431 -NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 431 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.++.+|+++++++|+..+.-+.++|.+
T Consensus 428 ~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 457 (474)
T 1zmd_A 428 MVNEAALALEYGASCEDIARVCHAHPTLSE 457 (474)
T ss_dssp HHHHHHHHHHHTCBHHHHHHSCCCTTCTHH
T ss_pred HHHHHHHHHHCCCCHHHHhhCcCCCCCHHH
Confidence 69999999999999998887777776654
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=385.27 Aligned_cols=397 Identities=19% Similarity=0.258 Sum_probs=283.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHH-cCCCCCcEEEEe---------CCCCCC---CCCCcccccccCCCC----CCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIIS---------KEAVAP---YERPALSKAYLFPEG----TARLP 64 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~-~g~~~~~V~vie---------~~~~~~---~~~~~~~~~~~~~~~----~~~~~ 64 (461)
|++.+||+|||||+||++||..|++ .|++ |+||| ++.... +..|..++.++.... ....+
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~ 80 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKR---VAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESA 80 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCe---EEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHH
Confidence 3446899999999999999999999 9987 99999 322100 000111111111000 00000
Q ss_pred CceeecCC-----CC--------------CCCCHhHHHHc-CcEEEcCCeEEEEeCCCCEEEcC---C-----CcEEecC
Q 012545 65 GFHVCVGS-----GG--------------ERLLPEWYKEK-GIELILSTEIVRADIASKTLLSA---T-----GLIFKYQ 116 (461)
Q Consensus 65 ~~~~~~~~-----~~--------------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~---~-----~~~~~~d 116 (461)
.+...... +. .......+++. +++++.+ .+..++ .++|.+. + ++++.||
T Consensus 81 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d 157 (495)
T 2wpf_A 81 GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLG-WGSLES--KNVVVVRETADPKSAVKERLQAD 157 (495)
T ss_dssp TTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEES-EEEEEE--TTEEEEESSSSTTSCEEEEEEEE
T ss_pred hcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-EEEEee--CCEEEEeecCCccCCCCeEEEcC
Confidence 00000000 00 00012234566 9999998 566665 4667665 4 6679999
Q ss_pred EEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Q 012545 117 ILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV 196 (461)
Q Consensus 117 ~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~Vv 196 (461)
+||||||++|.+|.+||.+ .+++ .+++..+ . ..+++++||
T Consensus 158 ~lViATGs~p~~p~i~G~~--------------------------------~~~~---~~~~~~~----~-~~~~~vvVi 197 (495)
T 2wpf_A 158 HILLATGSWPQMPAIPGIE--------------------------------HCIS---SNEAFYL----P-EPPRRVLTV 197 (495)
T ss_dssp EEEECCCEEECCCCCTTGG--------------------------------GCEE---HHHHTTC----S-SCCSEEEEE
T ss_pred EEEEeCCCCcCCCCCCCcc--------------------------------cccc---HHHHHhh----h-hcCCeEEEE
Confidence 9999999999766655541 1222 2222211 1 147899999
Q ss_pred CCCHHHHHHHHHHHHC---CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC
Q 012545 197 GGGYIGLELSAALKIN---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 273 (461)
Q Consensus 197 G~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~ 273 (461)
|+|++|+|+|..|++. |.+|+++++.+++++. +++++.+.+.+.|++.||+++++++|++++.++++ ...|++.+
T Consensus 198 GgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~v~~~~ 275 (495)
T 2wpf_A 198 GGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDG-SKHVTFES 275 (495)
T ss_dssp CSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTS-CEEEEETT
T ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCc-eEEEEECC
Confidence 9999999999999999 9999999999999986 89999999999999999999999999999874333 35788899
Q ss_pred CcEEecCEEEEccCCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHH
Q 012545 274 GRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 349 (461)
Q Consensus 274 G~~i~aD~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 349 (461)
|+++++|.||+|+|++|+++.+ ..++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||
T Consensus 276 G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g 345 (495)
T 2wpf_A 276 GKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL----------MLTPVAINEG 345 (495)
T ss_dssp SCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHH
T ss_pred CcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHH
Confidence 9999999999999999999743 345665 4789999999999999999999999753 5688899999
Q ss_pred HHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC------CcEEEec--CCcc------ccCCCcE-EEEEEe
Q 012545 350 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFG--DNDL------ASATHKF-GTYWIK 414 (461)
Q Consensus 350 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~--~~~~------~~~~~~~-~~~~~~ 414 (461)
+.||.||++... ....|..+|+..++.+++ ..+|.++ +..+... ...+ .....+| +|++++
T Consensus 346 ~~aa~~i~g~~~--~~~~~~~~p~~~~~~~~~--a~vGl~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~ 421 (495)
T 2wpf_A 346 AALVDTVFGNKP--RKTDHTRVASAVFSIPPI--GTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTN 421 (495)
T ss_dssp HHHHHHHHSSCC--CCCCCSSCEEEECCSSCE--EEEECCHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEE
T ss_pred HHHHHHhcCCCC--CcCCCCCCCEEEECCCCe--EEEeCCHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEE
Confidence 999999997532 225677788766655554 4456553 2222211 1111 1235679 998884
Q ss_pred --CCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 415 --DGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 415 --~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
+|+|||+|++|+.+.+ ++.++.+|+.+++++||..+.-+.+++.+.
T Consensus 422 ~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 470 (495)
T 2wpf_A 422 HSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEE 470 (495)
T ss_dssp TTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGG
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHH
Confidence 7999999999999888 689999999999999988887777777653
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=371.76 Aligned_cols=396 Identities=20% Similarity=0.244 Sum_probs=285.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCC----CCCCCCceeecCC--
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVGS-- 72 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-- 72 (461)
|++.+||+|||||+||++||..|++.|++ |+|||++.... +..|.+++.++.... ....+.+......
T Consensus 1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (463)
T 2r9z_A 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKR---VALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGT 77 (463)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---
T ss_pred CCccCcEEEECCCHHHHHHHHHHHhCCCc---EEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence 34679999999999999999999999887 99999984311 000111111110000 0000000000000
Q ss_pred -C--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccccccc
Q 012545 73 -G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSK 137 (461)
Q Consensus 73 -~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~ 137 (461)
+ ....+...+++.+++++.+ .+..++ .+.|.+ +++++.||++|+|||++|.+|.+||..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~G~~-- 151 (463)
T 2r9z_A 78 LDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVD--AHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAE-- 151 (463)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEE-TTEEEEEEEEEECCCEEECCCSCTTGG--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEcc--CCEEEE-CCEEEEcCEEEECCCCCCCCCCCCCcc--
Confidence 0 0001123346689999998 455555 457777 677899999999999999666555531
Q ss_pred CccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 012545 138 HCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS 217 (461)
Q Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vt 217 (461)
.+ .+..++..+ . ..+++++|||+|++|+|+|..|++.|.+|+
T Consensus 152 ------------------------------~~---~~~~~~~~~----~-~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vt 193 (463)
T 2r9z_A 152 ------------------------------LG---ITSDGFFAL----Q-QQPKRVAIIGAGYIGIELAGLLRSFGSEVT 193 (463)
T ss_dssp ------------------------------GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred ------------------------------ce---ecHHHHhhh----h-ccCCEEEEECCCHHHHHHHHHHHhcCCEEE
Confidence 11 123333322 1 147899999999999999999999999999
Q ss_pred EEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc-EEecCEEEEccCCCCChhhh-
Q 012545 218 MVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLISLF- 295 (461)
Q Consensus 218 li~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-~i~aD~vi~a~G~~p~~~~~- 295 (461)
++++.+++++. +++++.+.+.+.+++.||+++++++|++++.++++ ..+++++|+ ++++|.||+|+|++|+++.+
T Consensus 194 lv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~ 270 (463)
T 2r9z_A 194 VVALEDRLLFQ-FDPLLSATLAENMHAQGIETHLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLG 270 (463)
T ss_dssp EECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSC
T ss_pred EEEcCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCC
Confidence 99999998886 89999999999999999999999999999873333 578889998 89999999999999999732
Q ss_pred --hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 --~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.+|.||++.... ....|..+|
T Consensus 271 ~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p 339 (463)
T 2r9z_A 271 LEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITGRD----------QLTPVAIAAGRRLAERLFDGQSE-RKLDYDNIP 339 (463)
T ss_dssp HHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGTSC----------CCHHHHHHHHHHHHHHHHSCCTT-CCCCCSSCC
T ss_pred chhcCCccCCCCCEeECCCCccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCc-ccCCCCCCC
Confidence 345665 4788999999999999999999998754 56788999999999999975321 114677789
Q ss_pred eEEEecCCcceEEccCCC-------CcEEEe-----cCCcc---ccCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHH
Q 012545 373 YFYSRAFDLSWQFYGDNV-------GDTVLF-----GDNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAI 434 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~-------~~~~~~-----~~~~~---~~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~ 434 (461)
+.+++.+++..+ |.++ |..+.. ..... .....+|.|+++ ++++|+|++++|+.+.+ ++.+
T Consensus 340 ~~~~~~~~~a~v--Gl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~ 417 (463)
T 2r9z_A 340 TVVFAHPPLSKV--GLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGF 417 (463)
T ss_dssp EEECCSSCEEEE--ECCHHHHHHHHCSCEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHH
T ss_pred EEEeCCCCeEEE--cCCHHHHHhcCCCCEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHH
Confidence 877766665554 5432 221221 11111 123567888888 47999999999998888 6999
Q ss_pred HHHHHcCCCCCChhhhhccCCCcccC
Q 012545 435 AKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
+.+|+.+++++|+..+.-+.+++.+.
T Consensus 418 ~~ai~~~~t~~~l~~~~~~hPt~~e~ 443 (463)
T 2r9z_A 418 AVAVKMGATKADFDNTVAIHPGSAEE 443 (463)
T ss_dssp HHHHHTTCBHHHHHTSCCCSSSSGGG
T ss_pred HHHHHCCCCHHHHhcCccCCCCHHHH
Confidence 99999999999988877777777653
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-47 Score=386.68 Aligned_cols=397 Identities=19% Similarity=0.214 Sum_probs=281.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC---CC-CcccccccCC---------CCCCCCCCcee
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY---ER-PALSKAYLFP---------EGTARLPGFHV 68 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~---~~-~~~~~~~~~~---------~~~~~~~~~~~ 68 (461)
|+..+||+|||||+||+++|..|++.|++ |+|||+++.... .. +..++.++.. .....++....
T Consensus 3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~ 79 (482)
T 1ojt_A 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEP 79 (482)
T ss_dssp SEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 55579999999999999999999999987 999999654320 00 1111111100 00000000000
Q ss_pred ecCCC------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC------------cEEecCEEEEccCC
Q 012545 69 CVGSG------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG------------LIFKYQILVIATGS 124 (461)
Q Consensus 69 ~~~~~------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~------------~~~~~d~liiAtG~ 124 (461)
..... .......++++.+++++.++.+. ++...-.+.+.++ .++.||++|+|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs 158 (482)
T 1ojt_A 80 ELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGS 158 (482)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCC
Confidence 00000 00001245567899999986543 4432222333345 57999999999999
Q ss_pred CccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHH
Q 012545 125 TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 204 (461)
Q Consensus 125 ~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e 204 (461)
+|..| +. ++ .+ ..++ +..++..+. ..+++++|||+|++|+|
T Consensus 159 ~p~~~---------------------------~~--i~-~~-~~v~---~~~~~~~~~-----~~~~~vvViGgG~ig~E 199 (482)
T 1ojt_A 159 RVTKL---------------------------PF--IP-ED-PRII---DSSGALALK-----EVPGKLLIIGGGIIGLE 199 (482)
T ss_dssp EECCC---------------------------SS--CC-CC-TTEE---CHHHHTTCC-----CCCSEEEEESCSHHHHH
T ss_pred CCCCC---------------------------CC--CC-cc-CcEE---cHHHHhccc-----ccCCeEEEECCCHHHHH
Confidence 98432 21 22 11 1343 344433321 14789999999999999
Q ss_pred HHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC----CcEEecC
Q 012545 205 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD----GRTLEAD 280 (461)
Q Consensus 205 ~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~----G~~i~aD 280 (461)
+|..|++.|.+|+++++.+++++. +++++.+.+.+.|++.||+++++++|++++.+++ ...+++.+ |+++++|
T Consensus 200 ~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~~D 276 (482)
T 1ojt_A 200 MGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED--GVYVTFEGANAPKEPQRYD 276 (482)
T ss_dssp HHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETT--EEEEEEESSSCCSSCEEES
T ss_pred HHHHHHHcCCeEEEEEECCccccc-cCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCC--eEEEEEeccCCCceEEEcC
Confidence 999999999999999999999986 8999999999999999999999999999987322 24677766 7789999
Q ss_pred EEEEccCCCCChhhh--h-ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHH
Q 012545 281 IVVVGVGGRPLISLF--K-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 356 (461)
Q Consensus 281 ~vi~a~G~~p~~~~~--~-~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 356 (461)
.||+|+|++||++++ + .++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||
T Consensus 277 ~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i 346 (482)
T 1ojt_A 277 AVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENC 346 (482)
T ss_dssp CEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHH
T ss_pred EEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCcccCCCCEEEEEcccCCC----------ccHHHHHHHHHHHHHHH
Confidence 999999999999873 3 35665 4588999999999999999999999864 46778999999999999
Q ss_pred hcccCCCcccCCCCCCeEEEecCCcceEEccCCC------CcEEEecCC-----ccc---cCCCcEEEEEE--eCCEEEE
Q 012545 357 MATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVG 420 (461)
Q Consensus 357 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~i~G 420 (461)
++.. ....|..+|++.++.+++ ..+|.++ |..+..... ... ....+|.|+++ ++|+|+|
T Consensus 347 ~g~~---~~~~~~~~p~~~~~~~~~--a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG 421 (482)
T 1ojt_A 347 AGHK---AYFDARVIPGVAYTSPEV--AWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIG 421 (482)
T ss_dssp TTCC---CCCCCCCCCEEECSSSCE--EEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEE
T ss_pred cCCC---ccCCCCCCCEEEEcCCCe--EEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEE
Confidence 9743 124566778776655554 4456554 322222211 111 23567999988 6899999
Q ss_pred EEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 421 VFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 421 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++++|+.+.+ ++.++.+|+++++++|+..+.-+.+++++
T Consensus 422 ~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 461 (482)
T 1ojt_A 422 GGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGE 461 (482)
T ss_dssp EEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTT
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence 9999999887 68999999999999998887777777654
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=389.98 Aligned_cols=395 Identities=18% Similarity=0.208 Sum_probs=271.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC------CC------CCcccccccCCCCCC-----CCCCce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP------YE------RPALSKAYLFPEGTA-----RLPGFH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~------~~------~~~~~~~~~~~~~~~-----~~~~~~ 67 (461)
.||++|||||+||+.||..++++|.+ |+|||+..... +. .|.++|.++...... ....+.
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~k---ValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G 118 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGAR---VLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG 118 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCC---EEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence 38999999999999999999999987 99999865321 11 122234333221100 000010
Q ss_pred eecCC---C--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEc------CCCcEEecCEEEEccCC
Q 012545 68 VCVGS---G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLS------ATGLIFKYQILVIATGS 124 (461)
Q Consensus 68 ~~~~~---~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~------~~~~~~~~d~liiAtG~ 124 (461)
..... + ........+++.+|+++.+ ...-++ .+++.+ .+++++.+|++|||||+
T Consensus 119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G-~a~f~~--~~~v~V~~~~~~~~~~~i~a~~iiIATGs 195 (542)
T 4b1b_A 119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYING-LAKLKD--KNTVSYYLKGDLSKEETVTGKYILIATGC 195 (542)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECE-EEEEEE--TTEEEEEEC--CCCEEEEEEEEEEECCCE
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-eEEEcC--CCcceEeecccCCceEEEeeeeEEeccCC
Confidence 00000 0 0011223456789999887 444444 344432 23457999999999999
Q ss_pred CccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHH
Q 012545 125 TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 204 (461)
Q Consensus 125 ~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e 204 (461)
+|.+|+.++. +...+++ .+++..+ ...|++++|||+|++|+|
T Consensus 196 ~P~~P~~~~~------------------------------~~~~~~t---s~~~l~l-----~~lP~~lvIIGgG~IGlE 237 (542)
T 4b1b_A 196 RPHIPDDVEG------------------------------AKELSIT---SDDIFSL-----KKDPGKTLVVGASYVALE 237 (542)
T ss_dssp EECCCSSSBT------------------------------HHHHCBC---HHHHTTC-----SSCCCSEEEECCSHHHHH
T ss_pred CCCCCCcccC------------------------------CCccccC---chhhhcc-----ccCCceEEEECCCHHHHH
Confidence 9965532221 1111222 2232222 115899999999999999
Q ss_pred HHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEE
Q 012545 205 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 205 ~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
+|..|+++|.+||++.+ +++++. +|+++++.+.+.|++.||+++++..+++++..+ ....+.+.++.++.+|.|++
T Consensus 238 ~A~~~~~lG~~VTii~~-~~~L~~-~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~--~~~~v~~~~~~~~~~D~vLv 313 (542)
T 4b1b_A 238 CSGFLNSLGYDVTVAVR-SIVLRG-FDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD--DKILVEFSDKTSELYDTVLY 313 (542)
T ss_dssp HHHHHHHHTCCEEEEES-SCSSTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEET--TEEEEEETTSCEEEESEEEE
T ss_pred HHHHHHhcCCeEEEecc-cccccc-cchhHHHHHHHHHHhhcceeecceEEEEEEecC--CeEEEEEcCCCeEEEEEEEE
Confidence 99999999999999987 456776 799999999999999999999999999998733 33578889999999999999
Q ss_pred ccCCCCChhhhh---ccccc-CC-CcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 285 GVGGRPLISLFK---GQVAE-NK-GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 285 a~G~~p~~~~~~---~~~~~-~~-g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
|+|++||++.+. .++.. .. +.|.||+++|||+|+|||+|||++... .....|..||++++.|+++.
T Consensus 314 AvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p---------~La~~A~~eg~~aa~~i~g~ 384 (542)
T 4b1b_A 314 AIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVP---------ELAPVAIKAGEILARRLFKD 384 (542)
T ss_dssp CSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCC---------CCHHHHHHHHHHHHHHHHSC
T ss_pred cccccCCccccCcccceeeecccCceEeccccccccCCCeEEeccccCCch---------hHHHHHHHHHHHHHHHHhcC
Confidence 999999999774 24444 33 446889999999999999999996532 35677889999999999986
Q ss_pred cCCCcccCCCCCCeEEEecCCcceEEccCCCCc----------EEEecCCc---------------------cccCCCcE
Q 012545 360 EGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD----------TVLFGDND---------------------LASATHKF 408 (461)
Q Consensus 360 ~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~---------------------~~~~~~~~ 408 (461)
.. ....|..+|++.++.++++.+ |.++.+ .+...... ....+.+|
T Consensus 385 ~~--~~~d~~~iP~~vft~PeiA~V--GlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 460 (542)
T 4b1b_A 385 SD--EIMDYSYIPTSIYTPIEYGAC--GYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCL 460 (542)
T ss_dssp CC--CCCCCSSCCEEECSSSCEEEE--ECCHHHHHHHHCTTTEEEEEC-----------------------------CCC
T ss_pred CC--cccCCCCCceEEeCCCCeEEE--eCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceE
Confidence 53 236788899999888887766 544311 11110000 00124578
Q ss_pred EEEEE---eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 409 GTYWI---KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 409 ~~~~~---~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
.|+.+ ++++|||+|++|+++.| ++.++.+|++++|++||..+.-+.+++++.
T Consensus 461 vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~HPTlsE~ 516 (542)
T 4b1b_A 461 AKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAES 516 (542)
T ss_dssp EEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC----------
T ss_pred EEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccCCcCCCHHHH
Confidence 88765 47999999999999988 689999999999999988887777777654
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=379.19 Aligned_cols=395 Identities=18% Similarity=0.173 Sum_probs=281.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCC----CCCCCCC---ceeecC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPG---FHVCVG 71 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~---~~~~~~ 71 (461)
|+..+||+|||||+||++||..|++.|++ |+|||++.... +..+..++.++... .....+. +.....
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (467)
T 1zk7_A 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQ---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP 77 (467)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCC
Confidence 44679999999999999999999999876 99999984210 00000011100000 0000000 000000
Q ss_pred CCCC----------------CCCHhHHHHc-CcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCccccccc
Q 012545 72 SGGE----------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSITSLT 132 (461)
Q Consensus 72 ~~~~----------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~~~ 132 (461)
.... ....+++++. +++++.+ ++..++.....+.+.+| +++.||++|+|||++|.+|++|
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~ 156 (467)
T 1zk7_A 78 TIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIP 156 (467)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCT
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCC
Confidence 0000 0123455566 9999987 67778766556666777 6799999999999999766655
Q ss_pred cccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC
Q 012545 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 212 (461)
Q Consensus 133 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~ 212 (461)
|+. ...++ +..++..+ . ..+++++|||+|++|+|+|..|.+.
T Consensus 157 G~~------------------------------~~~~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~ 198 (467)
T 1zk7_A 157 GLK------------------------------ESPYW---TSTEALAS----D-TIPERLAVIGSSVVALELAQAFARL 198 (467)
T ss_dssp TTT------------------------------TSCCB---CHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHT
T ss_pred CCC------------------------------cCcee---cHHHHhcc----c-ccCCEEEEECCCHHHHHHHHHHHHc
Confidence 542 22222 33333332 1 1478999999999999999999999
Q ss_pred CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 213 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
|.+|+++++.+++++ +++++.+.+.+.+++.||+++++++|++++. ++....+.++ +.++++|.||+|+|++|++
T Consensus 199 g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~ 273 (467)
T 1zk7_A 199 GSKVTVLARNTLFFR--EDPAIGEAVTAAFRAEGIEVLEHTQASQVAH--MDGEFVLTTT-HGELRADKLLVATGRTPNT 273 (467)
T ss_dssp TCEEEEECSSCTTTT--SCHHHHHHHHHHHHHTTCEEETTCCEEEEEE--ETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred CCEEEEEEECCccCC--CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--eCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence 999999999999988 7999999999999999999999999999986 3333456776 4589999999999999998
Q ss_pred hhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCC
Q 012545 293 SLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGY 368 (461)
Q Consensus 293 ~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 368 (461)
+++ ..++.. .+|+|.||+++||+.|+|||+|||+..+ ..+..|..||+.||.||++.. ....+
T Consensus 274 ~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~ 340 (467)
T 1zk7_A 274 RSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGD---AALDL 340 (467)
T ss_dssp TTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECSTTBSSC----------CCHHHHHHHHHHHHHHHTTCC---CCCCC
T ss_pred CcCCchhcCCcCCCCCCEEECCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC---cccCC
Confidence 743 345655 4688999999999999999999999875 357789999999999998752 12456
Q ss_pred CCCCeEEEecCCcceEEccCCC------CcEEEecC-----Cccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHH-H
Q 012545 369 DYLPYFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA---SATHKFGTYWIK--DGKVVGVFLESGTPEE-N 431 (461)
Q Consensus 369 ~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~~--~~~i~G~~~~g~~~~~-~ 431 (461)
..+|++....+ .+..+|.++ |..+.... .... ....+|.|++++ +|+|+|++++|+.+.+ +
T Consensus 341 ~~~p~~~~~~~--~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i 418 (467)
T 1zk7_A 341 TAMPAVVFTDP--QVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELI 418 (467)
T ss_dssp TTCEEEECSSS--EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHH
T ss_pred CCCCEEEecCC--ceEEEecCHHHHHhcCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHH
Confidence 67787655444 444456553 22222211 1111 235678998884 8999999999999877 6
Q ss_pred HHHHHHHHcCCCCCChhhhhccCCCcc
Q 012545 432 KAIAKVARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
+.++.+|+++++++|+..+.-+.++++
T Consensus 419 ~~~~~~i~~~~~~~~l~~~~~~~pt~~ 445 (467)
T 1zk7_A 419 QTAALAIRNRMTVQELADQLFPYLTMV 445 (467)
T ss_dssp HHHHHHHHTTCBHHHHHTSCCCTTSTT
T ss_pred HHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence 899999999999888666555555544
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=374.33 Aligned_cols=395 Identities=23% Similarity=0.289 Sum_probs=282.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCcccccccCCCC----------CCCCC------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----------TARLP------ 64 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----------~~~~~------ 64 (461)
++||+|||||+||++||..|++.|++ |+|||+++..... .+..++.++.... ...++
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMK---TACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 58999999999999999999999987 9999998643210 0111111111000 00000
Q ss_pred -CceeecC------CCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCcccccccccc
Q 012545 65 -GFHVCVG------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 65 -~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.+..... ........+++++.+++++.++. ..++.....+.+.+| +++.||++|+|||++|.+|++||
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~-~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g-- 155 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEG-SFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLP-- 155 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE-EEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBC--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCC--
Confidence 0000000 00000123456678999999854 456665455666677 67999999999999995544433
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
.+..+++ +..++..+. ..+++++|||+|++|+|+|..|.+.|.+
T Consensus 156 ----------------------------~~~~~v~---t~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~ 199 (468)
T 2qae_A 156 ----------------------------FDEKVVL---SSTGALALP-----RVPKTMVVIGGGVIGLELGSVWARLGAE 199 (468)
T ss_dssp ----------------------------CCSSSEE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred ----------------------------CCcCcee---chHHHhhcc-----cCCceEEEECCCHHHHHHHHHHHHhCCE
Confidence 3323444 334443321 1478999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHH-HhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEEEEccCCCC
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~vi~a~G~~p 290 (461)
|+++++.+++++. +++++.+.+.+.+ ++.||+++++++|++++.++++ ..+.+. +| +++++|.||+|+|++|
T Consensus 200 Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~i~~D~vv~a~G~~p 276 (468)
T 2qae_A 200 VTVVEFAPRCAPT-LDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDS--VSLEVEGKNGKRETVTCEALLVSVGRRP 276 (468)
T ss_dssp EEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSS--EEEEEECC---EEEEEESEEEECSCEEE
T ss_pred EEEEecCCccccc-CCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCe--EEEEEEcCCCceEEEECCEEEECCCccc
Confidence 9999999999986 8999999999999 9999999999999999874333 345554 66 6899999999999999
Q ss_pred Chhh--h-hccccc-CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcc
Q 012545 291 LISL--F-KGQVAE-NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV 365 (461)
Q Consensus 291 ~~~~--~-~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 365 (461)
++++ + ..++.. ++|+|.||+++||+.|+|||+|||+. .+ ..+..|..||+.||.||++.. ..
T Consensus 277 ~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~ 343 (468)
T 2qae_A 277 FTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGP----------MLAHKAEDEGVACAEILAGKP---GH 343 (468)
T ss_dssp CCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGBSSSC----------SCHHHHHHHHHHHHHHHTTCC---CC
T ss_pred CCCCCCchhcCCccCCCCCEeECCCcccCCCCEEEeeccCCCCC----------ccHhHHHHHHHHHHHHHcCCC---cc
Confidence 9986 3 345665 46889999999999999999999998 44 467789999999999999743 12
Q ss_pred cCCCCCCeEEEecCCcceEEccCCC------CcEEEecC-----Cccc---cCCCcEEEEEEe--CCEEEEEEEecCCHH
Q 012545 366 TGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA---SATHKFGTYWIK--DGKVVGVFLESGTPE 429 (461)
Q Consensus 366 ~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~~--~~~i~G~~~~g~~~~ 429 (461)
..|..+|++.++.+ .+..+|.++ |..+.... .... ....+|.|++++ +|+|+|++++|+.+.
T Consensus 344 ~~~~~~p~~~~~~~--~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~ 421 (468)
T 2qae_A 344 VNYGVIPAVIYTMP--EVASVGKSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAG 421 (468)
T ss_dssp CCTTSCCEEECSSS--EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHH
T ss_pred CCCCCCCEEEECCC--ceEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHH
Confidence 45667787655444 455557654 22222211 1111 235679998884 899999999999987
Q ss_pred H-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 430 E-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 430 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+ ++.++.+|+++++++|+..+.-+.++|.+
T Consensus 422 e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 452 (468)
T 2qae_A 422 ELIGEACLAMEYGASSEDVGRTCHAHPTMSE 452 (468)
T ss_dssp HHHHHHHHHHHTTCBHHHHHTSCCCSSCTHH
T ss_pred HHHHHHHHHHHCCCCHHHHhhcccCCCCHHH
Confidence 7 69999999999999988877666666654
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-46 Score=380.63 Aligned_cols=396 Identities=19% Similarity=0.193 Sum_probs=286.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCCCCcEEEEeCCCCCC---CCCCcccccccCC---------CCCCCCCCceee
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAP---YERPALSKAYLFP---------EGTARLPGFHVC 69 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~~~ 69 (461)
.+||||||||+||++||..|++. |++ |+|||+++... ...+..++.++.. .....++.+...
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~---V~liE~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQ---VTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDD 78 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEE---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-----
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCE---EEEEeCCCcCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 48999999999999999999998 776 99999986210 0001111211110 000111100000
Q ss_pred cCCC--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCC----CC--EEEcCCCc--EEecCEEEEccCCCcc
Q 012545 70 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIA----SK--TLLSATGL--IFKYQILVIATGSTVS 127 (461)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~----~~--~v~~~~~~--~~~~d~liiAtG~~~~ 127 (461)
.... ......+++++.+++++.+ .+..++.+ .+ .+...+++ ++.||++|+|||++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~ 157 (499)
T 1xdi_A 79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR 157 (499)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEEC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCC
Confidence 0000 0001245567789999998 47777762 13 35555665 7999999999999996
Q ss_pred ccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHH
Q 012545 128 ITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 207 (461)
Q Consensus 128 ~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~ 207 (461)
+|++||+ +..++++..+..+.. ..+++++|||+|++|+|+|.
T Consensus 158 ~p~i~g~------------------------------~~~~v~~~~~~~~~~--------~~~~~vvViGgG~ig~E~A~ 199 (499)
T 1xdi_A 158 ILPSAQP------------------------------DGERILTWRQLYDLD--------ALPDHLIVVGSGVTGAEFVD 199 (499)
T ss_dssp CCGGGCC------------------------------CSSSEEEGGGGGGCS--------SCCSSEEEESCSHHHHHHHH
T ss_pred CCCCCCC------------------------------CcCcEEehhHhhhhh--------ccCCeEEEECCCHHHHHHHH
Confidence 6555543 333455544333211 14789999999999999999
Q ss_pred HHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 208 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 208 ~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.++ +. ..+++.+|+++++|.||+|+|
T Consensus 200 ~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~aD~Vv~a~G 276 (499)
T 1xdi_A 200 AYTELGVPVTVVASQDHVLPY-EDADAALVLEESFAERGVRLFKNARAASVTRTG-AG-VLVTMTDGRTVEGSHALMTIG 276 (499)
T ss_dssp HHHHTTCCEEEECSSSSSSCC-SSHHHHHHHHHHHHHTTCEEETTCCEEEEEECS-SS-EEEEETTSCEEEESEEEECCC
T ss_pred HHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EEEEECCCcEEEcCEEEECCC
Confidence 999999999999999999987 899999999999999999999999999998733 33 467788898999999999999
Q ss_pred CCCChhh--hh-ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCC
Q 012545 288 GRPLISL--FK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363 (461)
Q Consensus 288 ~~p~~~~--~~-~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 363 (461)
++|++++ ++ .++.. .+|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||++...
T Consensus 277 ~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~-- 344 (499)
T 1xdi_A 277 SVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEGV-- 344 (499)
T ss_dssp EEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCcCCCcCCchhcCceECCCCCEEECCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCC--
Confidence 9999987 43 35665 4688999999999999999999999865 4577899999999999997521
Q ss_pred cccCCCCCCeEEEecCCcceEEccCCC------CcEEEec-----CCccc---cCCCcEEEEEEe--CCEEEEEEEecCC
Q 012545 364 TVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWIK--DGKVVGVFLESGT 427 (461)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~~--~~~i~G~~~~g~~ 427 (461)
....|..+|+++++.+ .+..+|.++ |..+... ..... ....+|.|++++ +|+|+|++++|+.
T Consensus 345 ~~~~~~~~p~~~~~~~--~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~ 422 (499)
T 1xdi_A 345 SPIRLRTVAATVFTRP--EIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPI 422 (499)
T ss_dssp CCCCGGGCEEEECSSS--EEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETT
T ss_pred ccCCCCCCcEEEEecC--CceEeCCCHHHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCc
Confidence 1245677888665444 445557654 2222221 11111 235679998884 7999999999999
Q ss_pred HHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 428 PEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 428 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.+ ++.++.+|+++++++|+..+.-+.++|++
T Consensus 423 a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 455 (499)
T 1xdi_A 423 ASELILPIAVAVQNRITVNELAQTLAVYPSLSG 455 (499)
T ss_dssp HHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHhcccccCCCchH
Confidence 888 68999999999999998877666666654
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=379.20 Aligned_cols=398 Identities=16% Similarity=0.159 Sum_probs=286.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCcccccccCCC----------CCCCCCCcee
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPE----------GTARLPGFHV 68 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~~ 68 (461)
++.+||+|||||+||++||..|++.|++ |+|||+.+.... ..+..++.++... .......+..
T Consensus 2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~---V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~ 78 (466)
T 3l8k_A 2 SLKYDVVVIGAGGAGYHGAFRLAKAKYN---VLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFST 78 (466)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHH
T ss_pred CccceEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHH
Confidence 3469999999999999999999999987 999997754321 0111111111000 0000000000
Q ss_pred ecCC--C---CC--CCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcE--EecCEEEEccCCCccccccccccccCc
Q 012545 69 CVGS--G---GE--RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLI--FKYQILVIATGSTVSITSLTSIRSKHC 139 (461)
Q Consensus 69 ~~~~--~---~~--~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~--~~~d~liiAtG~~~~~~~~~g~~~~~~ 139 (461)
.... . .. .....++++.+++++.+ ++..++.....|...++++ +.||++|+|||+.|.+|++||+.
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~---- 153 (466)
T 3l8k_A 79 VQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVE---- 153 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGG----
T ss_pred HHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCcc----
Confidence 0000 0 00 11222344578999998 7888887766777788887 99999999999999776666642
Q ss_pred cccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 012545 140 LCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 219 (461)
Q Consensus 140 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli 219 (461)
++ .+..++..+.+.+.. .+++++|||+|++|+|+|..|++.|.+|+++
T Consensus 154 ----------------------------~~---~t~~~~~~~~~~l~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv 201 (466)
T 3l8k_A 154 ----------------------------YC---LTSDDIFGYKTSFRK-LPQDMVIIGAGYIGLEIASIFRLMGVQTHII 201 (466)
T ss_dssp ----------------------------GS---BCHHHHHSTTCSCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------------------------ce---EeHHHHHHHHHHHhh-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 11 223333322111211 4789999999999999999999999999999
Q ss_pred ccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CCc--EEecCEEEEccCCCCChhh-
Q 012545 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVGGRPLISL- 294 (461)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G~--~i~aD~vi~a~G~~p~~~~- 294 (461)
++.+++++..+++++.+.+.+.++ |+++++++|++++.++++. ..+.+. +|+ ++++|.||+|+|++|++++
T Consensus 202 ~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~-v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~ 277 (466)
T 3l8k_A 202 EMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVKKIKDDE-YEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEG 277 (466)
T ss_dssp CSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEEEEETTE-EEEEECCTTSCCEEEEESCEEECCCEEECCCTT
T ss_pred EeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEEEcCCCc-EEEEEEecCCceEEEEcCEEEECcCCCcccccc
Confidence 999999987449999999988887 9999999999998733133 357777 676 8999999999999999983
Q ss_pred -hhccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc--cCCCcccCCCC
Q 012545 295 -FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT--EGGKTVTGYDY 370 (461)
Q Consensus 295 -~~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~--~~~~~~~~~~~ 370 (461)
...++.. ++| |.||+++||+.|+|||+|||++.+ +.+..|..||+.||.||++. .. ....+..
T Consensus 278 l~~~gl~~~~~G-i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~--~~~~~~~ 344 (466)
T 3l8k_A 278 AREIGLSISKTG-IVVDETMKTNIPNVFATGDANGLA----------PYYHAAVRMSIAAANNIMANGMPV--DYVDVKS 344 (466)
T ss_dssp TGGGTCCBCSSS-BCCCTTCBCSSTTEEECGGGTCSC----------CSHHHHHHHHHHHHHHHHTTTSCC--CCCCSTT
T ss_pred hhhcCceeCCCC-EeECCCccCCCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHhCCCCCc--cccCCCC
Confidence 3456666 466 999999999999999999999874 56888999999999999975 32 1246777
Q ss_pred CCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 371 LPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 371 ~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
+|+.+++.+++. .+|.++ |..+.. .+...+ ....+|.|+++ ++|+|||+|++|+++.+ ++.
T Consensus 345 ~p~~~~~~~~~a--~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~ 422 (466)
T 3l8k_A 345 IPVTIYTIPSLS--YVGILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINE 422 (466)
T ss_dssp SCEEECSSSCEE--EEECCHHHHHHHTCCEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHH
T ss_pred CcEEEECCCCeE--EecCCHHHHHhCCCCEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHH
Confidence 887766555554 446554 222222 111111 24678999888 46999999999999888 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCccc
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+|++++|++||..+.-+.+++++
T Consensus 423 ~~~ai~~~~t~~~l~~~~~~~Pt~~e 448 (466)
T 3l8k_A 423 LGLAVAYGLNAKQLASFAEQHPSTNE 448 (466)
T ss_dssp HHHHHHTTCBHHHHHHCCCCTTSTTH
T ss_pred HHHHHHCcCCHHHHhccccCCCChHH
Confidence 99999999999999988888887765
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=375.21 Aligned_cols=394 Identities=21% Similarity=0.237 Sum_probs=286.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCC----CCCCCCceeecCC----
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVGS---- 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---- 72 (461)
..+||+|||||++|++||..|+++|++ |+|||++.... +..|..++.++.... ....+.+......
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 101 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKR---VAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFN 101 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEEC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCE---EEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence 468999999999999999999999987 99999954211 000111111110000 0000000000000
Q ss_pred -------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcC-CCcEEecCEEEEccCCCcc-cccccccccc
Q 012545 73 -------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVS-ITSLTSIRSK 137 (461)
Q Consensus 73 -------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~liiAtG~~~~-~~~~~g~~~~ 137 (461)
........++++.+++++.+ .+..++ .+.+.+. +++.+.||++|+|||+.|. +|.+||...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~- 177 (484)
T 3o0h_A 102 WEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDL- 177 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--CCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccc-
Confidence 00011234456679999998 666665 4567765 6778999999999999997 777777531
Q ss_pred CccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 012545 138 HCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS 217 (461)
Q Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vt 217 (461)
+++..++.... ..+++++|+|+|++|+|+|..+.+.|.+|+
T Consensus 178 -------------------------------~~~~~~~~~~~--------~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt 218 (484)
T 3o0h_A 178 -------------------------------CLTSNEIFDLE--------KLPKSIVIVGGGYIGVEFANIFHGLGVKTT 218 (484)
T ss_dssp -------------------------------SBCTTTGGGCS--------SCCSEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred -------------------------------cccHHHHHhHH--------hcCCcEEEECcCHHHHHHHHHHHHcCCeEE
Confidence 01111111100 147899999999999999999999999999
Q ss_pred EEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh--
Q 012545 218 MVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF-- 295 (461)
Q Consensus 218 li~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~-- 295 (461)
++++.+++++. +++++.+.+.+.+++.||+++++++|++++.++ +. ..+++.+|+++++|.||+|+|++|+..++
T Consensus 219 li~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l 295 (484)
T 3o0h_A 219 LLHRGDLILRN-FDYDLRQLLNDAMVAKGISIIYEATVSQVQSTE-NC-YNVVLTNGQTICADRVMLATGRVPNTTGLGL 295 (484)
T ss_dssp EECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEESSCCEEEEEECS-SS-EEEEETTSCEEEESEEEECCCEEECCTTCCH
T ss_pred EEECCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeC-CE-EEEEECCCcEEEcCEEEEeeCCCcCCCCCCh
Confidence 99999998887 799999999999999999999999999998733 33 47889999999999999999999999853
Q ss_pred -hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCe
Q 012545 296 -KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY 373 (461)
Q Consensus 296 -~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~ 373 (461)
..++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||++.... ...|..+|+
T Consensus 296 ~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~p~ 363 (484)
T 3o0h_A 296 ERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHI----------QLTPVAIHDAMCFVKNAFENTST--TPDYDLITT 363 (484)
T ss_dssp HHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTSC----------CCHHHHHHHHHHHHHHHHC---C--CCCCTTCCE
T ss_pred hhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCC----------cCHHHHHHHHHHHHHHHcCCCCC--cCCCCCCcE
Confidence 455666 5788999999999999999999999854 56788999999999999975422 256778898
Q ss_pred EEEecCCcceEEccCCC------CcEEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHH
Q 012545 374 FYSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAK 436 (461)
Q Consensus 374 ~~~~~~~~~~~~~g~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~ 436 (461)
.+++.+++..+ |.++ |..+.....+ .+ ....+|.|+++ ++++|||+|++|+++.+ ++.++.
T Consensus 364 ~~~~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ 441 (484)
T 3o0h_A 364 AVFSQPEIGTV--GLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGI 441 (484)
T ss_dssp EECCSSCEEEE--ECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHH
T ss_pred EEECCCCEEEe--eCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHH
Confidence 77766655544 6554 3222221111 10 23568888887 57999999999999988 689999
Q ss_pred HHHcCCCCCChhhhhccCCCcccC
Q 012545 437 VARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
+|+.+++++|+..+.-+.+++++.
T Consensus 442 ai~~~~t~~~l~~~~~~hPt~~e~ 465 (484)
T 3o0h_A 442 SLKGKLTKDIFDKTMAVHPTMSEE 465 (484)
T ss_dssp HHHTTCBHHHHHHSCCCSSCSGGG
T ss_pred HHHCCCCHHHHhccccCCCChHHH
Confidence 999999999998888777777654
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-46 Score=378.27 Aligned_cols=395 Identities=19% Similarity=0.236 Sum_probs=283.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-cCCCCCcEEEEe---------CCCCCC---CCCCcccccccCCCCC----CCCCCc
Q 012545 4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIIS---------KEAVAP---YERPALSKAYLFPEGT----ARLPGF 66 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~-~g~~~~~V~vie---------~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~ 66 (461)
..+||+|||||+||++||..|++ .|++ |+||| ++.... +..|..++.++..... ...+.+
T Consensus 2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~ 78 (490)
T 1fec_A 2 RAYDLVVIGAGSGGLEAGWNAASLHKKR---VAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGF 78 (490)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred ccccEEEECCCHHHHHHHHHHHHHcCCE---EEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 9987 99999 332110 0001111111110000 000000
Q ss_pred eeecC-----CCC--------------CCCCHhHHHHc-CcEEEcCCeEEEEeCCCCEEEcC-----CC---cEEecCEE
Q 012545 67 HVCVG-----SGG--------------ERLLPEWYKEK-GIELILSTEIVRADIASKTLLSA-----TG---LIFKYQIL 118 (461)
Q Consensus 67 ~~~~~-----~~~--------------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~-----~~---~~~~~d~l 118 (461)
..... .+. .......+++. +++++.+ .+..++. +++.+. ++ +++.||+|
T Consensus 79 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~l 155 (490)
T 1fec_A 79 GWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEYI 155 (490)
T ss_dssp TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEE
T ss_pred CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCEE
Confidence 00000 000 00112234567 9999998 5777764 455552 56 67999999
Q ss_pred EEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECC
Q 012545 119 VIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGG 198 (461)
Q Consensus 119 iiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~ 198 (461)
|+|||++|.+|.+||.. .+ .+.+++..+ ...+++++|||+
T Consensus 156 viAtGs~p~~p~i~g~~--------------------------------~~---~~~~~~~~~-----~~~~~~vvViGg 195 (490)
T 1fec_A 156 LLATGSWPQHLGIEGDD--------------------------------LC---ITSNEAFYL-----DEAPKRALCVGG 195 (490)
T ss_dssp EECCCEEECCCCSBTGG--------------------------------GC---BCHHHHTTC-----SSCCSEEEEECS
T ss_pred EEeCCCCCCCCCCCCcc--------------------------------ce---ecHHHHhhh-----hhcCCeEEEECC
Confidence 99999999776666642 11 122222221 114789999999
Q ss_pred CHHHHHHHHHHHHC---CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc
Q 012545 199 GYIGLELSAALKIN---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR 275 (461)
Q Consensus 199 G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~ 275 (461)
|++|+|+|..|.+. |.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.++++. ..|++++|+
T Consensus 196 G~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~ 273 (490)
T 1fec_A 196 GYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFESGA 273 (490)
T ss_dssp SHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETTSC
T ss_pred CHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEECCCc
Confidence 99999999999999 9999999999999986 899999999999999999999999999998743333 478889998
Q ss_pred EEecCEEEEccCCCCChhh--h-hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHH
Q 012545 276 TLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 351 (461)
Q Consensus 276 ~i~aD~vi~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 351 (461)
++++|.||+|+|++|+++. + ..++.. ++|+|.||+++||+.|+|||+|||++.+ +.+..|..||+.
T Consensus 274 ~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~ 343 (490)
T 1fec_A 274 EADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINEGAA 343 (490)
T ss_dssp EEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHH
T ss_pred EEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHH
Confidence 9999999999999999973 3 345666 4789999999999999999999999753 578899999999
Q ss_pred HHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC------CcEEEec--CCcc------ccCCCcEE-EEEEe--
Q 012545 352 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFG--DNDL------ASATHKFG-TYWIK-- 414 (461)
Q Consensus 352 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~--~~~~------~~~~~~~~-~~~~~-- 414 (461)
||.||++... ....|..+|+..++.+++ ..+|.++ +..+... ...+ .....+|. |++++
T Consensus 344 aa~~i~g~~~--~~~~~~~~p~~~~~~~~~--a~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~ 419 (490)
T 1fec_A 344 FVDTVFANKP--RATDHTKVACAVFSIPPM--GVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHA 419 (490)
T ss_dssp HHHHHHSSCC--CCCCCSSCCEEECCSSCE--EEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETT
T ss_pred HHHHhcCCCC--CcCCCCCccEEEECCCCe--EEEeCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECC
Confidence 9999997532 235677788766555544 4456553 1122211 1111 12356799 98884
Q ss_pred CCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 415 DGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 415 ~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
+|+|||+|++|+.+.+ ++.++.+|+++++++|+..+.-+.+++.+.
T Consensus 420 ~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 466 (490)
T 1fec_A 420 DGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEE 466 (490)
T ss_dssp TTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHH
Confidence 8999999999999888 689999999999999988877777777653
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-46 Score=377.82 Aligned_cols=396 Identities=22% Similarity=0.247 Sum_probs=283.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CC------CCcccccccCCCC-----CCCCCCcee
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YE------RPALSKAYLFPEG-----TARLPGFHV 68 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~------~~~~~~~~~~~~~-----~~~~~~~~~ 68 (461)
+.|||+|||||+||++||..|++.|++ |+|||+++... +. .|..++.++.... ...+..+..
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~ 78 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLK---TALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI 78 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCC---EEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 479999999999999999999999987 99999986211 00 0000111100000 000000000
Q ss_pred ecCCC-----------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCcccc
Q 012545 69 CVGSG-----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 69 ~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~ 129 (461)
..... .......++++.+++++.+ .+..++.....+...++ +++.||++|+|||++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~-- 155 (476)
T 3lad_A 79 STGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPV-- 155 (476)
T ss_dssp ECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEEC--
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCC--
Confidence 00000 0001123455679999998 45556655556666666 57899999999999983
Q ss_pred ccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHH
Q 012545 130 SLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL 209 (461)
Q Consensus 130 ~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l 209 (461)
.+| .++.+...+++..+..+ + ...+++++|||+|++|+|+|..|
T Consensus 156 -------------------------~~~---~~~~~~~~v~~~~~~~~---~-----~~~~~~v~ViGgG~~g~e~A~~l 199 (476)
T 3lad_A 156 -------------------------EIP---PAPVDQDVIVDSTGALD---F-----QNVPGKLGVIGAGVIGLELGSVW 199 (476)
T ss_dssp -------------------------CCT---TSCCCSSSEEEHHHHTS---C-----SSCCSEEEEECCSHHHHHHHHHH
T ss_pred -------------------------CCC---CCCCCcccEEechhhhc---c-----ccCCCeEEEECCCHHHHHHHHHH
Confidence 222 12233445665432221 1 12578999999999999999999
Q ss_pred HHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC---cEEecCEEEEcc
Q 012545 210 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGV 286 (461)
Q Consensus 210 ~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G---~~i~aD~vi~a~ 286 (461)
.+.|.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.++++ ..+.+.++ +++++|.||+|+
T Consensus 200 ~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~~~D~vi~a~ 276 (476)
T 3lad_A 200 ARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAV 276 (476)
T ss_dssp HHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECS
T ss_pred HHcCCcEEEEecCCCcCcc-cCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCE--EEEEEEeCCCcEEEECCEEEEee
Confidence 9999999999999999986 89999999999999999999999999999874333 34666554 679999999999
Q ss_pred CCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 287 GGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 287 G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
|++|+++.+ ..++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||++...
T Consensus 277 G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~- 345 (476)
T 3lad_A 277 GRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHKA- 345 (476)
T ss_dssp CEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCCC-
T ss_pred CCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEccCCCc----------ccHHHHHHHHHHHHHHhcCCCc-
Confidence 999999753 345555 5788999999999999999999999765 4678899999999999997542
Q ss_pred CcccCCCCCCeEEEecCCcceEEccCCC------CcEEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecC
Q 012545 363 KTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESG 426 (461)
Q Consensus 363 ~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~ 426 (461)
...|..+|+..++.++ +..+|.++ |..+..+..+ .+ ..+.+|.|+++ ++|+|||+|++|+
T Consensus 346 --~~~~~~~p~~~~~~~~--~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~ 421 (476)
T 3lad_A 346 --QMNYDLIPAVIYTHPE--IAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGP 421 (476)
T ss_dssp --CCCTTCCCEEECSSSE--EEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEET
T ss_pred --ccCCCCCCEEEECcCC--EEEeeCCHHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECC
Confidence 2567778887655444 44556654 3223222211 11 23568999887 5799999999999
Q ss_pred CHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 427 TPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 427 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+ ++.++.+|++++|++||..+.-+.+++++
T Consensus 422 ~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 455 (476)
T 3lad_A 422 SAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSE 455 (476)
T ss_dssp THHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHH
T ss_pred CHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHH
Confidence 9888 68999999999999998887777776654
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-46 Score=377.67 Aligned_cols=400 Identities=21% Similarity=0.276 Sum_probs=281.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCcccccccCCCC----CC-CCCCceeec-C
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----TA-RLPGFHVCV-G 71 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----~~-~~~~~~~~~-~ 71 (461)
|++.+||+|||||+||+++|..|++.|++ |+|||+++..... .+..++.++.... .. .+..+.... .
T Consensus 2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~ 78 (478)
T 1v59_A 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNG 78 (478)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECS
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 45579999999999999999999999986 9999996542210 0001111111000 00 000000000 0
Q ss_pred C---CC--------------CCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cE------EecCEEEEccCCCc
Q 012545 72 S---GG--------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LI------FKYQILVIATGSTV 126 (461)
Q Consensus 72 ~---~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~------~~~d~liiAtG~~~ 126 (461)
. .. .....+++++.+++++.++.+. .+.....|.+.+| ++ +.||+||+|||++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p 157 (478)
T 1v59_A 79 DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV 157 (478)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence 0 00 0012345667899999986554 2222223455555 56 99999999999988
Q ss_pred cccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHH
Q 012545 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 206 (461)
Q Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a 206 (461)
. .+||+. ..+ ..++ +..++..+. . .+++++|||+|++|+|+|
T Consensus 158 ~--~~~g~~-------------------------~~~---~~v~---~~~~~~~~~----~-~~~~vvViGgG~~g~e~A 199 (478)
T 1v59_A 158 T--PFPGIE-------------------------IDE---EKIV---SSTGALSLK----E-IPKRLTIIGGGIIGLEMG 199 (478)
T ss_dssp C--CCTTCC-------------------------CCS---SSEE---CHHHHTTCS----S-CCSEEEEECCSHHHHHHH
T ss_pred C--CCCCCC-------------------------CCC---ceEE---cHHHHHhhh----c-cCceEEEECCCHHHHHHH
Confidence 1 222211 111 1233 344443321 1 478999999999999999
Q ss_pred HHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-----CCcEEecCE
Q 012545 207 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----DGRTLEADI 281 (461)
Q Consensus 207 ~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----~G~~i~aD~ 281 (461)
..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|+++...+++....+++. +++++++|.
T Consensus 200 ~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~ 278 (478)
T 1v59_A 200 SVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEV 278 (478)
T ss_dssp HHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESE
T ss_pred HHHHHcCCEEEEEEeCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCE
Confidence 9999999999999999999985 8999999999999999999999999999986213333456665 456899999
Q ss_pred EEEccCCCCChh--hhh-ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 282 VVVGVGGRPLIS--LFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 282 vi~a~G~~p~~~--~~~-~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
||+|+|++|+++ +++ .++.. ++|+|.||+++||+.|+|||+|||+..+ ..+..|..||+.||.||+
T Consensus 279 vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~ 348 (478)
T 1v59_A 279 LLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLK 348 (478)
T ss_dssp EEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHc
Confidence 999999999997 443 45665 4788999999999999999999999865 457789999999999999
Q ss_pred cccCCCcccCCCCCCeEEEecCCcceEEccCCC------CcEEEecC-----Cccc---cCCCcEEEEEEe--CCEEEEE
Q 012545 358 ATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA---SATHKFGTYWIK--DGKVVGV 421 (461)
Q Consensus 358 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~~--~~~i~G~ 421 (461)
+.. ....|..+|+++++.+++.. +|.++ |..+.... .... ....+|.|+++. +|+|+|+
T Consensus 349 ~~~---~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~ 423 (478)
T 1v59_A 349 TGH---GHVNYNNIPSVMYSHPEVAW--VGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGA 423 (478)
T ss_dssp HSC---CCCCTTSCCEEECSSSEEEE--EECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEE
T ss_pred CCC---CCCCCCCCCEEEEcCCcEEE--EECCHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEE
Confidence 743 12567788988776665544 46553 32222211 1111 234678888774 8999999
Q ss_pred EEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 422 FLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 422 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+++|+.+.+ ++.++.+|+++++++|+..+..+.+++.+
T Consensus 424 ~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e 462 (478)
T 1v59_A 424 HIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSE 462 (478)
T ss_dssp EEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCCHHH
Confidence 999998877 79999999999999998888777777654
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=373.99 Aligned_cols=396 Identities=22% Similarity=0.251 Sum_probs=279.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--C-CCcccccccCC----------CCCCCCC-Cceeec
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--E-RPALSKAYLFP----------EGTARLP-GFHVCV 70 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~-~~~~~~~~~~~----------~~~~~~~-~~~~~~ 70 (461)
.+||+|||||+||++||..|++.|++ |+|+|++..... . .+..++.++.. .....++ ......
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLS---TAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY 79 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence 58999999999999999999999987 999999832100 0 00111111100 0000000 000000
Q ss_pred CC----------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCccccccccccccC
Q 012545 71 GS----------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSITSLTSIRSKH 138 (461)
Q Consensus 71 ~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~~~g~~~~~ 138 (461)
.. .......+++++.+++++.++.+. ++.....+.+.+| +++.||++|+|||++|..|++||
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g----- 153 (464)
T 2a8x_A 80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTS----- 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCC-----
Confidence 00 000012345667899999986543 4333234555666 67999999999999995444333
Q ss_pred ccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEE
Q 012545 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSM 218 (461)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtl 218 (461)
.+.. ++ +..++..+. ..+++++|||+|++|+|+|..|++.|.+|++
T Consensus 154 -------------------------~~~~-~~---~~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl 199 (464)
T 2a8x_A 154 -------------------------LSAN-VV---TYEEQILSR-----ELPKSIIIAGAGAIGMEFGYVLKNYGVDVTI 199 (464)
T ss_dssp -------------------------CBTT-EE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred -------------------------CCce-EE---ecHHHhhcc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 2221 33 334443321 1478999999999999999999999999999
Q ss_pred EccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CC--cEEecCEEEEccCCCCChhh-
Q 012545 219 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DG--RTLEADIVVVGVGGRPLISL- 294 (461)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G--~~i~aD~vi~a~G~~p~~~~- 294 (461)
+++.+++++. +++++.+.+.+.+++.||+++++++|++++.++++ ..+.+. +| +++++|.||+|+|++||+++
T Consensus 200 v~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l 276 (464)
T 2a8x_A 200 VEFLPRALPN-EDADVSKEIEKQFKKLGVTILTATKVESIADGGSQ--VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGY 276 (464)
T ss_dssp ECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSC--EEEEEESSSCEEEEEESEEEECSCEEECCSSS
T ss_pred EEcCCccccc-cCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCe--EEEEEEcCCceEEEEcCEEEECCCCCccCCCC
Confidence 9999999986 89999999999999999999999999999873333 345554 66 68999999999999999986
Q ss_pred -h-hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC
Q 012545 295 -F-KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL 371 (461)
Q Consensus 295 -~-~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 371 (461)
+ +.++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||++... .+...|..+
T Consensus 277 ~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~ 345 (464)
T 2a8x_A 277 GLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL----------QLAHVAEAQGVVAAETIAGAET-LTLGDHRML 345 (464)
T ss_dssp CHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHHTCCC-CCCCCGGGS
T ss_pred CchhcCCccCCCCCEeECcCCccCCCCEEEeECcCCCc----------cCHHHHHHHHHHHHHHhcCCCC-cccCCCCCC
Confidence 3 345665 4688999999999999999999999864 4577899999999999997321 111346677
Q ss_pred CeEEEecCCcceEEccCCC------CcEEEecC-----Cccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHH
Q 012545 372 PYFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAI 434 (461)
Q Consensus 372 p~~~~~~~~~~~~~~g~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~ 434 (461)
|++.++.+ .+..+|.++ |..+.... .... ....+|.|+++ ++|+|+|++++|+.+.+ ++.+
T Consensus 346 p~~~~~~~--~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~ 423 (464)
T 2a8x_A 346 PRATFCQP--NVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPEL 423 (464)
T ss_dssp CEEECSSS--EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHH
T ss_pred CEEEECCC--CeEEEcCCHHHHHhcCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHH
Confidence 87655444 445556553 22222211 1111 23567999888 48999999999999877 7999
Q ss_pred HHHHHcCCCCCChhhhhccCCCccc
Q 012545 435 AKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.+|+++++++|+..+.-+.++|++
T Consensus 424 ~~ai~~~~~~~~l~~~~~~~Pt~~e 448 (464)
T 2a8x_A 424 TLAQRWDLTASELARNVHTHPTMSE 448 (464)
T ss_dssp HHHHHTTCBHHHHTTSCCCTTCTTH
T ss_pred HHHHHCCCCHHHHhhCccCCCChHH
Confidence 9999999999988877666666654
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=377.69 Aligned_cols=398 Identities=19% Similarity=0.198 Sum_probs=281.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCc------ccccccCC-------------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPA------LSKAYLFP------------- 57 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~------~~~~~~~~------------- 57 (461)
..|||+|||||+||++||..|++.|++ |+|||+.+..+ +...| .++.++..
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~ 84 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGAR---VACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY 84 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCE---EEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999987 99999532111 11111 11111000
Q ss_pred -CCCCCCCCceee--cC------CCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc-EEecCEEEEccCCCcc
Q 012545 58 -EGTARLPGFHVC--VG------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVS 127 (461)
Q Consensus 58 -~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~liiAtG~~~~ 127 (461)
......+.+.+. .. ..........++..+++++.+ .+..++.....+.+.+++ ++.||++|||||++|.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~ 163 (483)
T 3dgh_A 85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPR 163 (483)
T ss_dssp TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence 000000000000 00 000001113355679999987 556666555556666664 7999999999999998
Q ss_pred ccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHH
Q 012545 128 ITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 207 (461)
Q Consensus 128 ~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~ 207 (461)
+|.+||+.+. .+ +.+++..+ ...+++++|||+|++|+|+|.
T Consensus 164 ~p~i~G~~~~-------------------------------~~---~~~~~~~~-----~~~~~~vvViGgG~~g~E~A~ 204 (483)
T 3dgh_A 164 YPDIPGAVEY-------------------------------GI---TSDDLFSL-----DREPGKTLVVGAGYIGLECAG 204 (483)
T ss_dssp CCSSTTHHHH-------------------------------CB---CHHHHTTC-----SSCCCEEEEECCSHHHHHHHH
T ss_pred CCCCCCcccc-------------------------------cC---cHHHHhhh-----hhcCCcEEEECCCHHHHHHHH
Confidence 7777775320 00 12222211 114789999999999999999
Q ss_pred HHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc-----EEecCEE
Q 012545 208 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIV 282 (461)
Q Consensus 208 ~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-----~i~aD~v 282 (461)
.|++.|.+|+++++ +.+++. +++++.+.+.+.|++.||++++++++++++..+++.+ .+++.++. ++++|.|
T Consensus 205 ~l~~~g~~Vtlv~~-~~~l~~-~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~v 281 (483)
T 3dgh_A 205 FLKGLGYEPTVMVR-SIVLRG-FDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTV 281 (483)
T ss_dssp HHHHTTCEEEEEES-SCSSTT-SCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEE
T ss_pred HHHHcCCEEEEEeC-CCCCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEE
Confidence 99999999999998 456665 7999999999999999999999999999987444443 56666553 7999999
Q ss_pred EEccCCCCChhhh---hcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 283 VVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 283 i~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
++|+|++|+++++ ..++..++|+|.||+++||+.|+|||+|||+.... ..+..|..||+.||.||++.
T Consensus 282 i~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~ 352 (483)
T 3dgh_A 282 LWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGG 352 (483)
T ss_dssp EECSCEEECCGGGTGGGTTCCCBTTBBCCCTTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSC
T ss_pred EECcccccCcCcCCchhcCccccCCEEEECcCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCC
Confidence 9999999999876 33566655999999999999999999999984321 46788999999999999976
Q ss_pred cCCCcccCCCCCCeEEEecCCcceEEccCCC-------C-c--EEEecCCccc-------cCCCcEEEEEE--e-CCEEE
Q 012545 360 EGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------G-D--TVLFGDNDLA-------SATHKFGTYWI--K-DGKVV 419 (461)
Q Consensus 360 ~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~--~~~~~~~~~~-------~~~~~~~~~~~--~-~~~i~ 419 (461)
.. ....|..+|+.+++.++++.+ |.++ + . .+......+. ..+.+|.|+++ + +|+||
T Consensus 353 ~~--~~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~il 428 (483)
T 3dgh_A 353 ST--QRMDYKDVATTVFTPLEYACV--GLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVY 428 (483)
T ss_dssp CC--CCCCCTTCCEEECSSSEEEEE--ECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEE
T ss_pred CC--CcCCCCCCCEEEECCCccEEE--eCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEE
Confidence 42 235678889888776665554 5543 1 1 1211111110 13567999887 3 69999
Q ss_pred EEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 420 GVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 420 G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
|+|++|+++.+ ++.++.+|++++|++||..+.-+.+++++.
T Consensus 429 G~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 470 (483)
T 3dgh_A 429 GLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEE 470 (483)
T ss_dssp EEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHH
Confidence 99999999888 689999999999999988877777777654
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=372.73 Aligned_cols=402 Identities=20% Similarity=0.242 Sum_probs=274.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCcc-cccccCCC---------CCCCC---CCceee
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPAL-SKAYLFPE---------GTARL---PGFHVC 69 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~~-~~~~~~~~---------~~~~~---~~~~~~ 69 (461)
.+||+|||||+||++||..|++.|++ |+|||+++... ..+.|. ++.++... ....+ +.+.+.
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP 78 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence 48999999999999999999999887 99999985311 011111 11111000 00000 000000
Q ss_pred --cC------CCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC-------------CcEEecCEEEEccCCCccc
Q 012545 70 --VG------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-------------GLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 70 --~~------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-------------~~~~~~d~liiAtG~~~~~ 128 (461)
.. .........++++.+++++.++ +..++ .+.+.+.+ ++++.||+||+|||++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~id--~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~ 155 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFLS--ENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF 155 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEee--CCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC
Confidence 00 0000012234567899999884 33333 34555533 5679999999999999976
Q ss_pred cccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHH
Q 012545 129 TSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAA 208 (461)
Q Consensus 129 ~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~ 208 (461)
|++||++ .+++ .+++..+ . .+++++|||+|++|+|+|..
T Consensus 156 p~i~G~~--------------------------------~~~~---~~~~~~~----~--~~~~vvViGgG~ig~E~A~~ 194 (500)
T 1onf_A 156 PPVKGIE--------------------------------NTIS---SDEFFNI----K--ESKKIGIVGSGYIAVELINV 194 (500)
T ss_dssp CSCTTGG--------------------------------GCEE---HHHHTTC----C--CCSEEEEECCSHHHHHHHHH
T ss_pred CCCCCCC--------------------------------cccC---HHHHhcc----C--CCCeEEEECChHHHHHHHHH
Confidence 6655531 1222 2222211 1 27899999999999999999
Q ss_pred HHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcE-EecCEEEEccC
Q 012545 209 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVG 287 (461)
Q Consensus 209 l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~-i~aD~vi~a~G 287 (461)
|++.|.+|+++++.+++++. +++++.+.+.+.|++.||+++++++|++++.++++. ..+++++|++ +++|.||+|+|
T Consensus 195 l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G 272 (500)
T 1onf_A 195 IKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVG 272 (500)
T ss_dssp HHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCC
T ss_pred HHHcCCeEEEEecCCccCcc-cchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCC
Confidence 99999999999999999986 899999999999999999999999999998743343 4688889988 99999999999
Q ss_pred CCCChh-h-h-hcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccc-----------------------cC-cceeec
Q 012545 288 GRPLIS-L-F-KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL-----------------------YR-EMRRVE 340 (461)
Q Consensus 288 ~~p~~~-~-~-~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~-----------------------~~-~~~~~~ 340 (461)
++|+++ + + ..++..++|+|.||+++||+.|+|||+|||+..+... .+ ....++
T Consensus 273 ~~p~~~~l~~~~~g~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (500)
T 1onf_A 273 RSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQ 352 (500)
T ss_dssp BCCTTTTSSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC------------------------------CBCCC
T ss_pred CCcCCCCCCchhcCccccCCEEEECCCcccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCccc
Confidence 999996 3 3 3445557788999999999999999999999432100 00 002346
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC-------C-cEEE-----ecCCcc------
Q 012545 341 HVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------G-DTVL-----FGDNDL------ 401 (461)
Q Consensus 341 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~~~~-----~~~~~~------ 401 (461)
++..|..||++||.||++... ....|..+|+..++.+++..+ |.++ | ..+. +.....
T Consensus 353 ~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~~~~~a~v--Gl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 428 (500)
T 1onf_A 353 LTPVAINAGRLLADRLFLKKT--RKTNYKLIPTVIFSHPPIGTI--GLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIE 428 (500)
T ss_dssp CHHHHHHHHHHHHHHHHSCTT--CCCCCSSCCEEECCSSCEEEE--ECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSC
T ss_pred chhHHHHHHHHHHHHHhCCCC--ccCCCCCCCeEEEcCcceEEE--eCCHHHHHhcCCCccEEEEEEECchhhhhhcccc
Confidence 889999999999999997431 235677788876655555444 5542 2 1121 111111
Q ss_pred -ccCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 402 -ASATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 402 -~~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.....+|.|+++ ++|+|||+|++|+.+.+ ++.++.+|+.+++++||..+.-+.+++++
T Consensus 429 ~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 490 (500)
T 1onf_A 429 PELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAE 490 (500)
T ss_dssp GGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTT
T ss_pred ccCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHH
Confidence 123567888888 57999999999998888 68999999999999998888777777665
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=373.11 Aligned_cols=397 Identities=23% Similarity=0.279 Sum_probs=281.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCcccccccCCCC----------CCCCC--Cc
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----------TARLP--GF 66 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----------~~~~~--~~ 66 (461)
+.++||+|||||+||++||..|++.|++ |+|||+++..... .+..++.++.... ...++ ..
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 80 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV 80 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 3468999999999999999999999987 9999998643211 0011111110000 00000 00
Q ss_pred eeecCC----------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCccccccccc
Q 012545 67 HVCVGS----------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 67 ~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
...... ........++++.+++++.++.+. ++.....+.+.+| +++.||++|+|||++|.+|++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~ 159 (470)
T 1dxl_A 81 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTI 159 (470)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCC
Confidence 000000 000012345566799999986554 6654344555566 679999999999999965544442
Q ss_pred cccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC
Q 012545 135 RSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 214 (461)
Q Consensus 135 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~ 214 (461)
+..++++ ..++..+ . ..+++++|||+|++|+|+|..|.+.|.
T Consensus 160 ------------------------------~~~~v~~---~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~ 201 (470)
T 1dxl_A 160 ------------------------------DEKKIVS---STGALAL----S-EIPKKLVVIGAGYIGLEMGSVWGRIGS 201 (470)
T ss_dssp ------------------------------CSSSEEC---HHHHTTC----S-SCCSEEEESCCSHHHHHHHHHHHHHTC
T ss_pred ------------------------------CcccEEe---HHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 2233443 3333222 1 147899999999999999999999999
Q ss_pred cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CC--cEEecCEEEEccCCC
Q 012545 215 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGR 289 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G--~~i~aD~vi~a~G~~ 289 (461)
+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.++++ ..+.+. +| +++++|.||+|+|++
T Consensus 202 ~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 278 (470)
T 1dxl_A 202 EVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDG--VKLTVEPSAGGEQTIIEADVVLVSAGRT 278 (470)
T ss_dssp EEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSS--EEEEEEESSSCCCEEEEESEEECCCCEE
T ss_pred cEEEEEcCCccccc-ccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCe--EEEEEEecCCCcceEEECCEEEECCCCC
Confidence 99999999999986 89999999999999999999999999999863333 345553 44 689999999999999
Q ss_pred CChhh--hh-ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcc
Q 012545 290 PLISL--FK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV 365 (461)
Q Consensus 290 p~~~~--~~-~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 365 (461)
||+++ ++ .++.. ++|+|.||+++||+.|+|||+|||+..+ ..+..|..||+.||.||++.. ..
T Consensus 279 p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~ 345 (470)
T 1dxl_A 279 PFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKV---GH 345 (470)
T ss_dssp ECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSC---CC
T ss_pred cCCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCC---cC
Confidence 99987 33 35665 4688999999999999999999999864 457789999999999999743 12
Q ss_pred cCCCCCCeEEEecCCcceEEccCCC------CcEEEecCC-----ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHH
Q 012545 366 TGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPE 429 (461)
Q Consensus 366 ~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~i~G~~~~g~~~~ 429 (461)
..|..+|++..+. ..+..+|.++ |..+..... ... ....+|.|++++ +|+|+|++++|+.+.
T Consensus 346 ~~~~~~p~~~~~~--~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~ 423 (470)
T 1dxl_A 346 VDYDKVPGVVYTN--PEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAG 423 (470)
T ss_dssp CCTTSCCEEECSS--SEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHH
T ss_pred CCCCCCCEEEECC--CceEEEcCCHHHHHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHH
Confidence 4566678765444 4455556553 322222111 111 235679998884 899999999999987
Q ss_pred H-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 430 E-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 430 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+ ++.++.+|+++++++|+..+.-+.++|.+
T Consensus 424 ~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 454 (470)
T 1dxl_A 424 ELIHEAAIALQYDASSEDIARVCHAHPTMSE 454 (470)
T ss_dssp HHHHHHHHHHHTTCBHHHHHTSCCCSSCTTH
T ss_pred HHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence 7 69999999999999998877777766654
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-45 Score=368.22 Aligned_cols=391 Identities=22% Similarity=0.288 Sum_probs=279.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCc-ccccccCCCCC----CCCCCceee--cCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPA-LSKAYLFPEGT----ARLPGFHVC--VGSGGE 75 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~-~~~~~~~~~~~----~~~~~~~~~--~~~~~~ 75 (461)
.+||+|||||+||++||..|++.|++ |+|||+++... ....+ .++.++..... .....+... ...+..
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLK---VLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence 58999999999999999999999886 99999986211 00111 11211110000 000000000 000000
Q ss_pred --------------CCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccc
Q 012545 76 --------------RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLC 141 (461)
Q Consensus 76 --------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~ 141 (461)
.....++++.+++++.++.+ .++ .+++.+. ++++.||+||+|||++|.+|
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~--~~~v~v~-g~~~~~d~lViATGs~p~~p------------ 146 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFAR-LVG--PKEVEVG-GERYGAKSLILATGSEPLEL------------ 146 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEE-EEE--TTEEEET-TEEEEEEEEEECCCEEECCB------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEE-Ecc--CCEEEEc-cEEEEeCEEEEcCCCCCCCC------------
Confidence 00234566789999998544 354 4677776 67899999999999999432
Q ss_pred cccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 142 CFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
| ++++. ..++ +..++..+ ....+++++|||+|++|+|+|..|++.|.+|+++++
T Consensus 147 ---------------~--gi~~~--~~v~---~~~~~~~l----~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 200 (464)
T 2eq6_A 147 ---------------K--GFPFG--EDVW---DSTRALKV----EEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEY 200 (464)
T ss_dssp ---------------T--TBCCS--SSEE---CHHHHTCG----GGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred ---------------C--CCCCC--CcEE---cHHHHHhh----hhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 2 13331 2344 34444332 221478999999999999999999999999999999
Q ss_pred CCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-C--Cc--EEecCEEEEccCCCCChhhh-
Q 012545 222 EPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-D--GR--TLEADIVVVGVGGRPLISLF- 295 (461)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~--G~--~i~aD~vi~a~G~~p~~~~~- 295 (461)
.+++++. +++++.+.+.+.+++.||+++++++|++++.++ +. ..+++. + |+ ++++|.||+|+|++|+++++
T Consensus 201 ~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~ 277 (464)
T 2eq6_A 201 MPEILPQ-GDPETAALLRRALEKEGIRVRTKTKAVGYEKKK-DG-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLG 277 (464)
T ss_dssp SSSSSTT-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TE-EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSS
T ss_pred CCccccc-cCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC-CE-EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCC
Confidence 9999886 799999999999999999999999999998732 22 456665 6 76 89999999999999999853
Q ss_pred --hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 --~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++.. ++|+|.||+++||+.|+|||+|||++.+ ..+..|..||+.||.||++.. ....|. +|
T Consensus 278 l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~---~~~~~~-~p 343 (464)
T 2eq6_A 278 LEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP----------LLAHKAMREGLIAAENAAGKD---SAFDYQ-VP 343 (464)
T ss_dssp HHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCC---CCCCCC-CC
T ss_pred hhhcCceecCCCCEEECCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCC---cccCCC-CC
Confidence 345665 5788999999999999999999999864 457789999999999999743 124566 78
Q ss_pred eEEEecCCcceEEccCCC------CcEEEecC-----Cccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHH-HHHHH
Q 012545 373 YFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA---SATHKFGTYWIK--DGKVVGVFLESGTPEE-NKAIA 435 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~~--~~~i~G~~~~g~~~~~-~~~~~ 435 (461)
++..+.+ .+..+|.++ |..+.... ...+ ....+|.|++++ +|+|+|++++|+.+.+ ++.++
T Consensus 344 ~~~~~~~--~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~ 421 (464)
T 2eq6_A 344 SVVYTSP--EWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAA 421 (464)
T ss_dssp EEECSSS--EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH
T ss_pred eEEECCC--CEEEEeCCHHHHHhcCCCEEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH
Confidence 7654444 445556554 22222211 1111 235678998884 7999999999999887 69999
Q ss_pred HHHHcCCCCCChhhhhccCCCccc
Q 012545 436 KVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.+|+.+++++|+..+.-+.+++.+
T Consensus 422 ~ai~~~~~~~~l~~~~~~~Pt~~e 445 (464)
T 2eq6_A 422 LALEMGATLTDLALTVHPHPTLSE 445 (464)
T ss_dssp HHHHTTCBHHHHHHSCCCSSCTTH
T ss_pred HHHHCCCCHHHHhcCcCCCCChHH
Confidence 999999999998877777766654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=367.49 Aligned_cols=394 Identities=20% Similarity=0.263 Sum_probs=279.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCC----CCCCCCCceeecCCC----
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGFHVCVGSG---- 73 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---- 73 (461)
++||+|||||+||++||..|++.|++ |+|||++.... +..+..++.++... .......+.......
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 58999999999999999999999987 99999983210 00011111111000 000000000000000
Q ss_pred -------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC-cEEecCEEEEccCCCccccccccccccCc
Q 012545 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVSITSLTSIRSKHC 139 (461)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~liiAtG~~~~~~~~~g~~~~~~ 139 (461)
......+++++.+++++.++.+ .++.....+.+.++ +++.||++|+|||++|..|++||
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g------ 152 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY-FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFK------ 152 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE-EEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCC------
Confidence 0001234556789999998544 46654445666666 67999999999999995544333
Q ss_pred cccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 012545 140 LCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 219 (461)
Q Consensus 140 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli 219 (461)
.+. .++ +..++..+ . ..+++++|||+|++|+|+|..|++.|.+|+++
T Consensus 153 ------------------------~~~-~v~---~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv 199 (455)
T 1ebd_A 153 ------------------------FSN-RIL---DSTGALNL----G-EVPKSLVVIGGGYIGIELGTAYANFGTKVTIL 199 (455)
T ss_dssp ------------------------CCS-SEE---CHHHHHTC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ------------------------ccc-eEe---cHHHHhcc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 221 133 33443332 1 14789999999999999999999999999999
Q ss_pred ccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCcEEecCEEEEccCCCCChhh--
Q 012545 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGRTLEADIVVVGVGGRPLISL-- 294 (461)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~~i~aD~vi~a~G~~p~~~~-- 294 (461)
++.+++++. +++++.+.+.+.+++.||+++++++|++++.++++ ..+++. +++++++|.||+|+|++|++++
T Consensus 200 ~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~ 276 (455)
T 1ebd_A 200 EGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELG 276 (455)
T ss_dssp ESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECSCEEESCSSSS
T ss_pred EcCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe--EEEEEEeCCceeEEEcCEEEECcCCCcccCcCC
Confidence 999999886 79999999999999999999999999999863322 345543 4568999999999999999986
Q ss_pred hh-ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 295 FK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 295 ~~-~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
++ .++.. ++|+|.||+++||+.|+|||+|||+..+ ..+..|..||+.||.||.+.. ....|..+|
T Consensus 277 ~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p 343 (455)
T 1ebd_A 277 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHP---SAVDYVAIP 343 (455)
T ss_dssp TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCC---CCCCCSCCC
T ss_pred hhhcCCccCCCCCEeeCCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC---ccCCCCCCC
Confidence 33 34655 4688999999999999999999999864 457789999999999999743 124566778
Q ss_pred eEEEecCCcceEEccCCC------CcEEEecCC-----ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHH-HHHHH
Q 012545 373 YFYSRAFDLSWQFYGDNV------GDTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEE-NKAIA 435 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~------~~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~i~G~~~~g~~~~~-~~~~~ 435 (461)
++....++ +..+|.++ |..+..... ... ....+|.|++++ +|+|+|++++|+.+.+ ++.++
T Consensus 344 ~~~~~~~~--~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~ 421 (455)
T 1ebd_A 344 AVVFSDPE--CASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELG 421 (455)
T ss_dssp EEECSSSC--EEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHH
T ss_pred EEEECCCc--eEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHH
Confidence 76554444 44556543 322222111 111 235679998884 8999999999999877 69999
Q ss_pred HHHHcCCCCCChhhhhccCCCccc
Q 012545 436 KVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.+|+++++++|+..+.-+.+++.+
T Consensus 422 ~ai~~~~~~~~l~~~~~~~Pt~~e 445 (455)
T 1ebd_A 422 LAIEAGMTAEDIALTIHAHPTLGE 445 (455)
T ss_dssp HHHHHTCBHHHHHHSCCCTTSSTH
T ss_pred HHHHCCCCHHHHhhcccCCCCHHH
Confidence 999999999998887777777654
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=375.06 Aligned_cols=399 Identities=18% Similarity=0.158 Sum_probs=279.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------CCc------ccccccCCCCC----CCCCCce
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------RPA------LSKAYLFPEGT----ARLPGFH 67 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~------~~~------~~~~~~~~~~~----~~~~~~~ 67 (461)
..+||+|||||+||++||..|++.|++ |+|||+++..++. ..| .++.++..... .....+.
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g 107 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYGKK---VMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG 107 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999987 9999996422111 001 11111100000 0000000
Q ss_pred eecCCC------------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcc
Q 012545 68 VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVS 127 (461)
Q Consensus 68 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~ 127 (461)
...... ........++..+++++.+ .+..++.....+...+|+ ++.||+||||||++|.
T Consensus 108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~ 186 (519)
T 3qfa_A 108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPR 186 (519)
T ss_dssp BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEEC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcC
Confidence 000000 0001122455679999987 677777665566666664 7999999999999998
Q ss_pred ccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHH
Q 012545 128 ITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 207 (461)
Q Consensus 128 ~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~ 207 (461)
+|.+||..++ + .+.+++..+ ...+++++|||+|++|+|+|.
T Consensus 187 ~p~i~G~~~~-------------------------------~---~t~~~~~~l-----~~~~~~vvVIGgG~ig~E~A~ 227 (519)
T 3qfa_A 187 YLGIPGDKEY-------------------------------C---ISSDDLFSL-----PYCPGKTLVVGASYVALECAG 227 (519)
T ss_dssp CCCCTTHHHH-------------------------------C---BCHHHHTTC-----SSCCCSEEEECCSHHHHHHHH
T ss_pred CCCCCCccCc-------------------------------e---EcHHHHhhh-----hhcCCeEEEECCcHHHHHHHH
Confidence 7777775320 0 112222211 114678999999999999999
Q ss_pred HHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCC---CC-EEEEEeCCCc---EEecC
Q 012545 208 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD---GE-VKEVKLKDGR---TLEAD 280 (461)
Q Consensus 208 ~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~---g~-~~~v~~~~G~---~i~aD 280 (461)
.|++.|.+|+++++. .+++. +++++.+.+.+.|++.||+++++++++++...++ +. ...+...+|. ++++|
T Consensus 228 ~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D 305 (519)
T 3qfa_A 228 FLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYN 305 (519)
T ss_dssp HHHHTTCCEEEEESS-CSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEES
T ss_pred HHHHcCCeEEEEecc-ccccc-CCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECC
Confidence 999999999999984 66765 7999999999999999999999988888865322 22 2233445652 57899
Q ss_pred EEEEccCCCCChhhh---hccccc--CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHH
Q 012545 281 IVVVGVGGRPLISLF---KGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKT 355 (461)
Q Consensus 281 ~vi~a~G~~p~~~~~---~~~~~~--~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 355 (461)
.|++|+|++|+++++ ..++.. .+|+|.||+++||+.|+|||+|||+.... ..+..|..||++||.|
T Consensus 306 ~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~---------~~~~~A~~~g~~aa~~ 376 (519)
T 3qfa_A 306 TVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV---------ELTPVAIQAGRLLAQR 376 (519)
T ss_dssp EEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBCSSTTEEECGGGBSSSC---------CCHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCccCCCCEEEEEeccCCCC---------ccHHHHHHHHHHHHHH
Confidence 999999999999853 345665 36899999999999999999999994321 5678899999999999
Q ss_pred HhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC--------cEEEe--cCCcc-------ccCCCcEEEEEEe---C
Q 012545 356 IMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--------DTVLF--GDNDL-------ASATHKFGTYWIK---D 415 (461)
Q Consensus 356 i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--------~~~~~--~~~~~-------~~~~~~~~~~~~~---~ 415 (461)
|++... ....|..+|+..++.++++.+ |.++. ..+.. ....+ ...+.+|+|++++ +
T Consensus 377 i~g~~~--~~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~ 452 (519)
T 3qfa_A 377 LYAGST--VKCDYENVPTTVFTPLEYGAC--GLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDN 452 (519)
T ss_dssp HHSCCC--CCCCCTTCCEEECSSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTT
T ss_pred HcCCCC--ccCCCCcCcEEEECCCceEEe--cCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCC
Confidence 997542 235677788877766665544 65541 11211 11110 0135689998873 5
Q ss_pred CEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 416 GKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 416 ~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
|+|||+|++|+++.+ ++.++.+|++++|++||..+.-+.+++++.
T Consensus 453 ~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~ 498 (519)
T 3qfa_A 453 ERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 498 (519)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGG
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHH
Confidence 999999999999888 689999999999999988888777777654
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=370.61 Aligned_cols=397 Identities=19% Similarity=0.208 Sum_probs=279.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------CCc------ccccccCCC-------------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------RPA------LSKAYLFPE------------- 58 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~------~~~------~~~~~~~~~------------- 58 (461)
+.|||+|||||+||++||..|++.|++ |+|||+.+..++. ..| .++.++...
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g 81 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKK---VAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYG 81 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999987 9999984322211 001 111111000
Q ss_pred -CCCCCCCcee--ecCC------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCcc
Q 012545 59 -GTARLPGFHV--CVGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVS 127 (461)
Q Consensus 59 -~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~ 127 (461)
.....+.+.+ .... .........++..+++++.+ .+..++.....+...++ .++.||+||||||++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 160 (488)
T 3dgz_A 82 WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPR 160 (488)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEEC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCC
Confidence 0000000000 0000 00001223455679999887 56655544445565666 47999999999999998
Q ss_pred ccc-cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHH
Q 012545 128 ITS-LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 206 (461)
Q Consensus 128 ~~~-~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a 206 (461)
+|+ +||+.+. ++ +..++..+ ...+++++|||+|++|+|+|
T Consensus 161 ~p~~i~G~~~~-------------------------------~~---~~~~~~~~-----~~~~~~vvViGgG~ig~E~A 201 (488)
T 3dgz_A 161 YPTQVKGALEY-------------------------------GI---TSDDIFWL-----KESPGKTLVVGASYVALECA 201 (488)
T ss_dssp CCSSCBTHHHH-------------------------------CB---CHHHHTTC-----SSCCCSEEEECCSHHHHHHH
T ss_pred CCCCCCCcccc-------------------------------cC---cHHHHHhh-----hhcCCeEEEECCCHHHHHHH
Confidence 887 7776320 00 12222211 11478999999999999999
Q ss_pred HHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---Cc--EEecCE
Q 012545 207 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADI 281 (461)
Q Consensus 207 ~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~--~i~aD~ 281 (461)
..|++.|.+|+++++.+ +++. +++++.+.+.+.|++.||++++++.++++...+++.+ .+++.+ |+ ++++|.
T Consensus 202 ~~l~~~g~~Vtlv~~~~-~l~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~ 278 (488)
T 3dgz_A 202 GFLTGIGLDTTVMMRSI-PLRG-FDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDT 278 (488)
T ss_dssp HHHHHTTCCEEEEESSC-SSTT-SCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESE
T ss_pred HHHHHcCCceEEEEcCc-cccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCE
Confidence 99999999999999864 5665 7999999999999999999999999999987444433 455543 54 479999
Q ss_pred EEEccCCCCChhhh---hcccccC--CCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHH
Q 012545 282 VVVGVGGRPLISLF---KGQVAEN--KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 356 (461)
Q Consensus 282 vi~a~G~~p~~~~~---~~~~~~~--~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 356 (461)
|++|+|++|+++++ ..++..+ +|+|.||+++||+.|+|||+|||+.... ..+..|..||+.||.||
T Consensus 279 vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i 349 (488)
T 3dgz_A 279 VLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRL 349 (488)
T ss_dssp EEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHH
T ss_pred EEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHH
Confidence 99999999999874 3455553 7899999999999999999999985321 46778999999999999
Q ss_pred hcccCCCcccCCCCCCeEEEecCCcceEEccCCC-------C-c--EEEecCCccc-------cCCCcEEEEEEe---CC
Q 012545 357 MATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------G-D--TVLFGDNDLA-------SATHKFGTYWIK---DG 416 (461)
Q Consensus 357 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~--~~~~~~~~~~-------~~~~~~~~~~~~---~~ 416 (461)
++... ....|..+|+.+++.++++.+ |.++ + . .+......+. ..+.+|+|++++ +|
T Consensus 350 ~g~~~--~~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ 425 (488)
T 3dgz_A 350 FGKSS--TLMDYSNVPTTVFTPLEYGCV--GLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQ 425 (488)
T ss_dssp HSCCC--CCCCCTTCCEEECSSSEEEEE--ECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTC
T ss_pred cCCCC--ccCCCCCCCEEEECCCCeEEE--eCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCC
Confidence 97642 235677889887776665544 6554 1 1 1221111111 125789998874 69
Q ss_pred EEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 417 KVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 417 ~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+|||+|++|+++.+ ++.++.+|+++++++||..+.-+.+++++
T Consensus 426 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 469 (488)
T 3dgz_A 426 LVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSE 469 (488)
T ss_dssp BEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSTH
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHH
Confidence 99999999999888 68999999999999998887777777654
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=374.85 Aligned_cols=398 Identities=16% Similarity=0.114 Sum_probs=277.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCC----CCCCCCCceeecCC-
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGFHVCVGS- 72 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~- 72 (461)
|++..+||+|||||+||++||..|++.|++ |+|||+++... +..|.+++.++... .....+.+......
T Consensus 4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liE~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 80 (492)
T 3ic9_A 4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDK---VVLIEGGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRI 80 (492)
T ss_dssp CEEEEEEEEEECCSHHHHHHHHHHHTTCSC---EEEEESSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEE
T ss_pred CccCCCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCC
Confidence 433358999999999999999999999987 99999985321 00111122221110 00111111110000
Q ss_pred --CC---CCCC-----------HhHHHH-cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccccc
Q 012545 73 --GG---ERLL-----------PEWYKE-KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 73 --~~---~~~~-----------~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.. .... ...+.. .+++++.+. .... +.++|.+.+++++.||++|||||++|.+|.++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~-a~~~--~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~- 156 (492)
T 3ic9_A 81 SVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGF-AKFL--DEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAA- 156 (492)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESC-EEEE--ETTEEEETTTEEEEEEEEEECCCEECCCCHHHHT-
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEE-EEEe--cCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCc-
Confidence 00 0000 011111 234455553 2222 3567888788889999999999999965544332
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
....+++. .++..+ ...+++++|||+|++|+|+|..|++.|.+
T Consensus 157 -----------------------------~~~~v~t~---~~~~~~-----~~~~k~vvViGgG~ig~E~A~~l~~~g~~ 199 (492)
T 3ic9_A 157 -----------------------------AGSRLLTN---DNLFEL-----NDLPKSVAVFGPGVIGLELGQALSRLGVI 199 (492)
T ss_dssp -----------------------------TGGGEECH---HHHTTC-----SSCCSEEEEESSCHHHHHHHHHHHHTTCE
T ss_pred -----------------------------cCCcEEcH---HHHhhh-----hhcCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 12234432 222221 11478999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEEEEccCCCCC
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPL 291 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~vi~a~G~~p~ 291 (461)
|+++++.+++++. +++++.+.+.+.|++. |++++++++++++.++++ + .+++. +| +++++|.||+|+|++|+
T Consensus 200 Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~ 275 (492)
T 3ic9_A 200 VKVFGRSGSVANL-QDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDA-V-EVIYFDKSGQKTTESFQYVLAATGRKAN 275 (492)
T ss_dssp EEEECCTTCCTTC-CCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSS-E-EEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred EEEEEECCccccc-CCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCE-E-EEEEEeCCCceEEEECCEEEEeeCCccC
Confidence 9999999999876 7999999999999998 999999999999874333 3 45554 67 68999999999999999
Q ss_pred hhhh---hccccc-CCCcEEeC-CCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCccc
Q 012545 292 ISLF---KGQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 366 (461)
Q Consensus 292 ~~~~---~~~~~~-~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 366 (461)
++++ ..++.. ++|+|.|| +++||+.|+|||+|||++.+ +.+..|..||+.||.||++.... ...
T Consensus 276 ~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~ 344 (492)
T 3ic9_A 276 VDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL----------TLLHEAADDGKVAGTNAGAYPVI-AQG 344 (492)
T ss_dssp CSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSS----------CSHHHHHHHHHHHHHHHHHTTSC-CEE
T ss_pred CCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCC----------ccHHHHHHHHHHHHHHHcCCCCC-ccc
Confidence 9863 335665 57899999 99999999999999999865 46788999999999999974321 224
Q ss_pred CCCCCCeEEEecCCcceEEccCCCC-----------cEEEec-----CCccc---cCCCcEEEEEE--eCCEEEEEEEec
Q 012545 367 GYDYLPYFYSRAFDLSWQFYGDNVG-----------DTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLES 425 (461)
Q Consensus 367 ~~~~~p~~~~~~~~~~~~~~g~~~~-----------~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g 425 (461)
.+..+|+..++.+++..+ |.++. ..+... ....+ ..+.+|.|+++ ++|+|||+|++|
T Consensus 345 ~~~~~p~~~~~~p~~a~v--Glte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g 422 (492)
T 3ic9_A 345 QRRAPLSVVFTEPQVASV--GLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFG 422 (492)
T ss_dssp CCCCCEEEECSSSEEEEE--ESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEE
T ss_pred CCCCCcEEEECCCCeEEe--cCCHHHHHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEEC
Confidence 566677766555555444 65431 122211 11111 24568999887 579999999999
Q ss_pred CCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 426 GTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 426 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+++.+ ++.++.+|+.++|++||..+.-+.+++++
T Consensus 423 ~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 457 (492)
T 3ic9_A 423 PAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEE 457 (492)
T ss_dssp TTHHHHHHHHHHHHHTTCBHHHHTTSCCCTTCTHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCChHH
Confidence 99988 58999999999999998877777776654
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=356.81 Aligned_cols=392 Identities=22% Similarity=0.265 Sum_probs=278.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCcccccccCCCC----CCCCCCceeecCC---C
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----TARLPGFHVCVGS---G 73 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~---~ 73 (461)
.+||+|||||+||++||..|++.|++ |+|||+++..... .+..++.++.... ... +.+...... +
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~~~~~~~ 76 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMK---VGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKVKGVELD 76 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEECCEEEC
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCe---EEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh-hcCCcccCCCccC
Confidence 37999999999999999999999987 9999998543210 0111111111000 000 000000000 0
Q ss_pred C--------------CCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcC-CCcEEecCEEEEccCCCccccccccccccC
Q 012545 74 G--------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVSITSLTSIRSKH 138 (461)
Q Consensus 74 ~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~liiAtG~~~~~~~~~g~~~~~ 138 (461)
. ......++++.+++++.++.+ .+ +.+.+.+. +++++.||++|+|||++|.+|++||
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i--~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g----- 148 (455)
T 2yqu_A 77 LPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR-FL--SERKVLVEETGEELEARYILIATGSAPLIPPWAQ----- 148 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ES--SSSEEEETTTCCEEEEEEEEECCCEEECCCTTBC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Ee--cCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCC-----
Confidence 0 001134556679999998543 33 34444443 5678999999999999995544433
Q ss_pred ccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEE
Q 012545 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSM 218 (461)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtl 218 (461)
.+..++++ ..++..+ . ..+++++|||+|++|+|+|..|++.|.+|++
T Consensus 149 -------------------------~~~~~v~~---~~~~~~~----~-~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~l 195 (455)
T 2yqu_A 149 -------------------------VDYERVVT---STEALSF----P-EVPKRLIVVGGGVIGLELGVVWHRLGAEVIV 195 (455)
T ss_dssp -------------------------CCSSSEEC---HHHHTCC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred -------------------------CCcCcEec---hHHhhcc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 22223443 2332221 1 1468999999999999999999999999999
Q ss_pred EccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh--hh
Q 012545 219 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--FK 296 (461)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~--~~ 296 (461)
+++.+++++. +++++.+.+.+.+++.||+++++++|++++.+++ ...+++++|+++++|.||+|+|++|+.++ ++
T Consensus 196 v~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~--~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~ 272 (455)
T 2yqu_A 196 LEYMDRILPT-MDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK--GARVELEGGEVLEADRVLVAVGRRPYTEGLSLE 272 (455)
T ss_dssp ECSSSSSCTT-SCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT--EEEEEETTSCEEEESEEEECSCEEECCTTCCGG
T ss_pred EecCCccccc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC--EEEEEECCCeEEEcCEEEECcCCCcCCCCCChh
Confidence 9999998886 7999999999999999999999999999987332 24677788889999999999999999976 33
Q ss_pred -ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeE
Q 012545 297 -GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYF 374 (461)
Q Consensus 297 -~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~ 374 (461)
.++.. .+|+|.||+++||+.|+|||+|||+..+ ..+..|..||+.||.||.+.. ....+..+|++
T Consensus 273 ~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~ 339 (455)
T 2yqu_A 273 NAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP----------MLAHKASEEGIAAVEHMVRGF---GHVDYQAIPSV 339 (455)
T ss_dssp GGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSC---CCCCGGGCCEE
T ss_pred hcCCccCCCCcEeECCCcccCCCCEEEEecCCCCc----------cCHHHHHHhHHHHHHHHcCCC---ccCCCCCCCEE
Confidence 34555 4688999999999999999999999865 457789999999999999743 12345567765
Q ss_pred EEecCCcceEEccCCC------CcEEEecCCc-----cc---cCCCcEEEEEEe--CCEEEEEEEecCCHHH-HHHHHHH
Q 012545 375 YSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWIK--DGKVVGVFLESGTPEE-NKAIAKV 437 (461)
Q Consensus 375 ~~~~~~~~~~~~g~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~~--~~~i~G~~~~g~~~~~-~~~~~~~ 437 (461)
....+ .+..+|.++ |..+...... .. ....+|.|++++ +|+|+|++++|+.+.+ ++.++.+
T Consensus 340 ~~~~~--~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~a 417 (455)
T 2yqu_A 340 VYTHP--EIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALA 417 (455)
T ss_dssp ECSSS--EEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHH
T ss_pred EEcCC--ceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
Confidence 54434 444556543 3223222111 10 235678898884 8999999999998877 6899999
Q ss_pred HHcCCCCCChhhhhccCCCccc
Q 012545 438 ARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
|.++++++++..+..+.++|.+
T Consensus 418 i~~~~~~~~~~~~~~~~Pt~~e 439 (455)
T 2yqu_A 418 LFFKASAEDLGRAPHAHPSLSE 439 (455)
T ss_dssp HHTTCBHHHHHHSCCCSSCTHH
T ss_pred HHCCCCHHHHhhcccCCCCHHH
Confidence 9999999988877777776654
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=357.34 Aligned_cols=386 Identities=21% Similarity=0.213 Sum_probs=274.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC-CCcccccccCCC---------CC---CCCCCceee
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE-RPALSKAYLFPE---------GT---ARLPGFHVC 69 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~-~~~~~~~~~~~~---------~~---~~~~~~~~~ 69 (461)
.+||+|||||+||++||..|++.|++ |+|||++.... .. .+.+++.++... .. ..++.-.
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~-- 79 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVAS-- 79 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCC--
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCE---EEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCC--
Confidence 58999999999999999999999986 99999954210 00 111122211000 00 0110000
Q ss_pred cCCCCC--------------CCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccccc
Q 012545 70 VGSGGE--------------RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 70 ~~~~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
...+.. ....+++++.+++++.++.+. ++ .+++.+.+ +++.||+||+|||++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~~-~~~~~d~lviATGs~p~~------- 148 (458)
T 1lvl_A 80 PRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVEVDG-QRIQCEHLLLATGSSSVE------- 148 (458)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEEETT-EEEECSEEEECCCEEECC-------
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc--CCEEEEee-EEEEeCEEEEeCCCCCCC-------
Confidence 000000 001245677899999986544 43 56787765 679999999999999843
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
+|. ++ .+. .++ +..++..+. ..+++++|||+|++|+|+|..|++.|.+
T Consensus 149 --------------------~~~--~~-~~~-~v~---~~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~ 196 (458)
T 1lvl_A 149 --------------------LPM--LP-LGG-PVI---SSTEALAPK-----ALPQHLVVVGGGYIGLELGIAYRKLGAQ 196 (458)
T ss_dssp --------------------BTT--BC-CBT-TEE---CHHHHTCCS-----SCCSEEEEECCSHHHHHHHHHHHHHTCE
T ss_pred --------------------CCC--CC-ccC-cEe---cHHHHhhhh-----ccCCeEEEECcCHHHHHHHHHHHHCCCe
Confidence 221 12 111 333 333333221 1478999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChh
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~ 293 (461)
|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++. ++ ..+.+.+| +++++|.||+|+|++|+.+
T Consensus 197 Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~--v~v~~~~G~~~~i~~D~vv~a~G~~p~~~ 271 (458)
T 1lvl_A 197 VSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYEN--GC--LLANDGKGGQLRLEADRVLVAVGRRPRTK 271 (458)
T ss_dssp EEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEET--TE--EEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred EEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEe--CC--EEEEECCCceEEEECCEEEECcCCCcCCC
Confidence 9999999999985 8999999999999999999999999999975 22 34554566 6899999999999999998
Q ss_pred hh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC
Q 012545 294 LF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD 369 (461)
Q Consensus 294 ~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 369 (461)
++ ..++.. ++ +|.||+++||+.|+|||+|||+..+ ..+..|..||+.||.||.+.. ....|.
T Consensus 272 ~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~ 337 (458)
T 1lvl_A 272 GFNLECLDLKMNGA-AIAIDERCQTSMHNVWAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKA---RRFEPA 337 (458)
T ss_dssp SSSGGGSCCCEETT-EECCCTTCBCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCC---CCCCCS
T ss_pred CCCcHhcCCcccCC-EEeECCCCcCCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHhcCCC---ccCCCC
Confidence 53 334554 34 9999999999999999999999865 467789999999999999743 124566
Q ss_pred CCCeEEEecCCcceEEccCCC------CcEEEecCC-----ccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 370 YLPYFYSRAFDLSWQFYGDNV------GDTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
.+|++....++ +..+|.++ |..+..+.. ... ....+|.|+++ ++++|+|++++|+.+.+ ++
T Consensus 338 ~~p~~~~~~p~--~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~ 415 (458)
T 1lvl_A 338 AIAAVCFTDPE--VVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELST 415 (458)
T ss_dssp CCCEEECSSSE--EEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHH
T ss_pred CCCEEEECCCC--eEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHH
Confidence 67866544444 44556543 322222211 111 23567898888 57999999999998877 78
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 433 AIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.++.+|+++++++|+..+.-+.+++++
T Consensus 416 ~~~~ai~~~~~~~~l~~~~~~~Pt~~e 442 (458)
T 1lvl_A 416 AFAQSLEMGACLEDVAGTIHAHPTLGE 442 (458)
T ss_dssp HHHHHHHHTCBHHHHHTSCCCTTCTTH
T ss_pred HHHHHHHCCCCHHHHhhCcCCCCCHHH
Confidence 999999999999888877666666654
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=359.74 Aligned_cols=396 Identities=17% Similarity=0.196 Sum_probs=273.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CC--C-----Ccc-cccccCCC-----------CC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YE--R-----PAL-SKAYLFPE-----------GT 60 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~--~-----~~~-~~~~~~~~-----------~~ 60 (461)
..+||+|||||+||++||..|++.|++ |+|+|+....+ |. . .+. ++.+.... ..
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~---v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g 182 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAK---TAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG 182 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCe---EEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence 468999999999999999999999987 99999842211 10 0 000 11000000 00
Q ss_pred CCCCCceeecCCCCCCC---------------CHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccC
Q 012545 61 ARLPGFHVCVGSGGERL---------------LPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATG 123 (461)
Q Consensus 61 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG 123 (461)
...+... ... .... ....++..+++++.+ ....++.....+...+| +++.||+||||||
T Consensus 183 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtG 258 (598)
T 2x8g_A 183 WSLDRSK--ISH-NWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATG 258 (598)
T ss_dssp CCCCGGG--CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCC
T ss_pred ccccCCc--Ccc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCC
Confidence 0000000 000 0000 111245678998886 56666654444555556 4689999999999
Q ss_pred CCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHH
Q 012545 124 STVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 203 (461)
Q Consensus 124 ~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~ 203 (461)
++|.+|++||..++ .++ .+++..+ ...+++++|||+|++|+
T Consensus 259 s~p~~p~i~G~~~~-------------------------------~~~---~~~~~~~-----~~~~~~vvViGgG~~g~ 299 (598)
T 2x8g_A 259 ERPKYPEIPGAVEY-------------------------------GIT---SDDLFSL-----PYFPGKTLVIGASYVAL 299 (598)
T ss_dssp EEECCCSSTTHHHH-------------------------------CEE---HHHHTTC-----SSCCCSEEEECCSHHHH
T ss_pred CCCCCCCCCCcccc-------------------------------eEc---HHHHhhC-----ccCCCEEEEECCCHHHH
Confidence 99977766664310 111 1111111 11468999999999999
Q ss_pred HHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec-----CC---CCE-EEEEeCCC
Q 012545 204 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-----AD---GEV-KEVKLKDG 274 (461)
Q Consensus 204 e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-----~~---g~~-~~v~~~~G 274 (461)
|+|..|++.|.+|+++++. .+++. +++++.+.+.+.|++.||++++++.++++... ++ +.+ ..+.+.+|
T Consensus 300 E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g 377 (598)
T 2x8g_A 300 ECAGFLASLGGDVTVMVRS-ILLRG-FDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG 377 (598)
T ss_dssp HHHHHHHHTTCCEEEEESS-CSSTT-SCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCEEEEEECC-cCcCc-CCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCC
Confidence 9999999999999999987 66665 79999999999999999999999988888642 11 322 23345688
Q ss_pred cEEe--cCEEEEccCCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHH
Q 012545 275 RTLE--ADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS 348 (461)
Q Consensus 275 ~~i~--aD~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~ 348 (461)
++++ +|.||+|+|++||++++ ..++.. .+|+|.||+++||+.|+|||+|||+.... ..+..|..|
T Consensus 378 ~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~~ 448 (598)
T 2x8g_A 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQA 448 (598)
T ss_dssp CEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHH
T ss_pred cEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHHh
Confidence 7665 99999999999999864 335655 57889999999999999999999965321 467889999
Q ss_pred HHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC-------Cc-EEEec--CCcc---c----cCCCcEEEE
Q 012545 349 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GD-TVLFG--DNDL---A----SATHKFGTY 411 (461)
Q Consensus 349 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~-~~~~~--~~~~---~----~~~~~~~~~ 411 (461)
|+.||.+|++... ....|..+|+.+++.+++..+ |.++ +. .+... ...+ . ....+|.|+
T Consensus 449 g~~aa~~i~~~~~--~~~~~~~~p~~~~~~~~~a~v--Gl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl 524 (598)
T 2x8g_A 449 GRYLARRLFAGAT--ELTDYSNVATTVFTPLEYGAC--GLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKL 524 (598)
T ss_dssp HHHHHHHHHHCCC--CCCCCTTCCEEECSSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEE
T ss_pred HHHHHHHHhcCCC--cccCCCCCcEEEECCCceEEE--eCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEE
Confidence 9999999997542 235677788877766665554 5443 21 11111 1111 0 124578888
Q ss_pred EEe---CCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 412 WIK---DGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 412 ~~~---~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
+++ +|+|+|++++|+.+.+ ++.++.+|+++++++|+..+.-+.+++++.
T Consensus 525 i~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 577 (598)
T 2x8g_A 525 VCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSET 577 (598)
T ss_dssp EEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGG
T ss_pred EEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHH
Confidence 774 7999999999998888 689999999999999988877777777653
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=313.09 Aligned_cols=299 Identities=20% Similarity=0.223 Sum_probs=211.6
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHh
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE 80 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
|....|||+||||||||++||.+|+++|++ |+|||++... +.++......++|.+....+.+.......
T Consensus 2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~---V~liE~~~~g--------G~~~~~~~i~~~p~~~~~~~~~~~~~~~~ 70 (312)
T 4gcm_A 2 MTEIDFDIAIIGAGPAGMTAAVYASRANLK---TVMIERGIPG--------GQMANTEEVENFPGFEMITGPDLSTKMFE 70 (312)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTT--------GGGGGCSCBCCSTTCSSBCHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCC--------CeeecccccCCcCCccccchHHHHHHHHH
Confidence 544579999999999999999999999987 9999987421 11221111223333322111111122344
Q ss_pred HHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCC
Q 012545 81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFG 160 (461)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (461)
+..+.+..+..+..+...+.....+...+++++.||++|||||++|..|+|||...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~------------------------ 126 (312)
T 4gcm_A 71 HAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQE------------------------ 126 (312)
T ss_dssp HHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTT------------------------
T ss_pred HHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhh------------------------
Confidence 55567777777767777777677777778888999999999999997777777532
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
+ ....++++...+ .. ..++++++|||+|++|+|+|..|++.|.+||++++.+++++.. ....+
T Consensus 127 ~---~~~~v~~~~~~~-~~-------~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~------~~~~~ 189 (312)
T 4gcm_A 127 L---GGRGVSYCAVCD-GA-------FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQR------ILQDR 189 (312)
T ss_dssp T---BTTTEESCHHHH-GG-------GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCH------HHHHH
T ss_pred h---CCccEEeeeccC-cc-------ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcch------hHHHH
Confidence 0 112333322111 11 1257899999999999999999999999999999999887641 12345
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCC--EEEEEe--CCCcEEecCEEEEccCCCCChhhhhcc-cccCCCcEEeCCCCCCC
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGE--VKEVKL--KDGRTLEADIVVVGVGGRPLISLFKGQ-VAENKGGIETDDFFKTS 315 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~--~~~v~~--~~G~~i~aD~vi~a~G~~p~~~~~~~~-~~~~~g~i~vd~~~~t~ 315 (461)
.+++.++.......+......+... ...... .++..+++|.|++++|.+|+..++... +..++|+|.||++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts 269 (312)
T 4gcm_A 190 AFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTS 269 (312)
T ss_dssp HHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCS
T ss_pred HHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccC
Confidence 6677888888877776665522111 111112 233579999999999999999888654 44478999999999999
Q ss_pred CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 316 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 316 ~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+|+|||+|||++.+. .++..|..||+.||.+|...+
T Consensus 270 ~pgIyA~GDv~~~~~---------~~~~~A~~~G~~AA~~i~~~L 305 (312)
T 4gcm_A 270 VPGIFAAGDVRDKGL---------RQIVTATGDGSIAAQSAAEYI 305 (312)
T ss_dssp STTEEECSTTBSCSC---------CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCcc---------hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997542 467889999999999997543
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-40 Score=334.92 Aligned_cols=298 Identities=20% Similarity=0.283 Sum_probs=228.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY- 82 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (461)
.+++|||||||+||+++|..|++.+++ |+|||+++++.|. |.+.... . ..+..-. .........
T Consensus 41 ~KprVVIIGgG~AGl~~A~~L~~~~~~---VtLId~~~~~~~~-PlL~~va-~----G~l~~~~------i~~p~~~~~~ 105 (502)
T 4g6h_A 41 DKPNVLILGSGWGAISFLKHIDTKKYN---VSIISPRSYFLFT-PLLPSAP-V----GTVDEKS------IIEPIVNFAL 105 (502)
T ss_dssp SSCEEEEECSSHHHHHHHHHSCTTTCE---EEEEESSSEEECG-GGGGGTT-T----TSSCGGG------GEEEHHHHHT
T ss_pred CCCCEEEECCcHHHHHHHHHhhhCCCc---EEEECCCCCcccc-cchhHHh-h----ccccHHH------hhhhHHHHHH
Confidence 357899999999999999999876655 9999999876653 4332110 0 0010000 000112222
Q ss_pred -HHcCcEEEcCCeEEEEeCCCCEEEcC--------------------CCcEEecCEEEEccCCCccccccccccccCccc
Q 012545 83 -KEKGIELILSTEIVRADIASKTLLSA--------------------TGLIFKYQILVIATGSTVSITSLTSIRSKHCLC 141 (461)
Q Consensus 83 -~~~~v~~~~~~~v~~i~~~~~~v~~~--------------------~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~ 141 (461)
++.+++++.+ +|++||++.++|.+. ++.++.||+||||||+.+..+.+||++
T Consensus 106 ~~~~~v~~~~~-~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~------ 178 (502)
T 4g6h_A 106 KKKGNVTYYEA-EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVT------ 178 (502)
T ss_dssp TCSSCEEEEEE-EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHH------
T ss_pred hhcCCeEEEEE-EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcc------
Confidence 2357889887 899999999988652 356799999999999999766666653
Q ss_pred cccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhc---------------CCCcEEEECCCHHHHHHH
Q 012545 142 CFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK---------------KNGKAVVVGGGYIGLELS 206 (461)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~---------------~~~~v~VvG~G~~g~e~a 206 (461)
++.+.+++++++.++++.+... ...+++|||+|++|+|+|
T Consensus 179 -------------------------e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A 233 (502)
T 4g6h_A 179 -------------------------DYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAA 233 (502)
T ss_dssp -------------------------HHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHH
T ss_pred -------------------------cccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhH
Confidence 2345678899988887665321 124799999999999999
Q ss_pred HHHHHC--------------CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC
Q 012545 207 AALKIN--------------NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 272 (461)
Q Consensus 207 ~~l~~~--------------g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~ 272 (461)
.+|.++ ..+|+++++.+++++. +++++++.+.+.|++.||+++++++|++++. ++......+.
T Consensus 234 ~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~ 310 (502)
T 4g6h_A 234 GELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHE 310 (502)
T ss_dssp HHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECT
T ss_pred HHHHHHHHHHHHhhcccccccceeEEeccccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEec
Confidence 998764 3689999999999997 8999999999999999999999999999964 5555566667
Q ss_pred CCc----EEecCEEEEccCCCCChh---hh-hccccc-CCCcEEeCCCCCC-CCCCEEEeCcccccCccccCcceeeccH
Q 012545 273 DGR----TLEADIVVVGVGGRPLIS---LF-KGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHV 342 (461)
Q Consensus 273 ~G~----~i~aD~vi~a~G~~p~~~---~~-~~~~~~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~~~~~~ 342 (461)
||+ ++++|.||||+|.+|+.. +. ..+... .+|+|.||++||| ++|||||+|||+..+.+ +..
T Consensus 311 dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p--------~~a 382 (502)
T 4g6h_A 311 DGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLP--------PTA 382 (502)
T ss_dssp TSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSC--------CCH
T ss_pred CcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCC--------Cch
Confidence 774 699999999999999853 22 223333 5789999999999 89999999999987755 678
Q ss_pred HHHHHHHHHHHHHHhcc
Q 012545 343 DHARKSAEQAVKTIMAT 359 (461)
Q Consensus 343 ~~A~~~g~~aa~~i~~~ 359 (461)
..|.+||+++|+||.+.
T Consensus 383 ~~A~qqg~~~A~ni~~~ 399 (502)
T 4g6h_A 383 QVAHQEAEYLAKNFDKM 399 (502)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999999653
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=309.74 Aligned_cols=305 Identities=17% Similarity=0.198 Sum_probs=222.4
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCC-CCCCCCceeecCCCCCCCCH
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-TARLPGFHVCVGSGGERLLP 79 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (461)
||++.+||+|||||+||+++|..|++.|++ |+|+|+++..... + . ...+.. ....+.+...........+.
T Consensus 1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~-~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (335)
T 2zbw_A 1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLS---FRFVDPLPEPGGQ-L--T--ALYPEKYIYDVAGFPKVYAKDLVKGLV 72 (335)
T ss_dssp --CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSCHH-H--H--HTCTTSEECCSTTCSSEEHHHHHHHHH
T ss_pred CCCCcCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCe-e--e--ccCCCceeeccCCCCCCCHHHHHHHHH
Confidence 777789999999999999999999999886 9999998653211 0 0 000000 01111111100001111233
Q ss_pred hHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCC---ccccccccccccCccccccccCCcccccc
Q 012545 80 EWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGST---VSITSLTSIRSKHCLCCFFLRTLPLFQVL 154 (461)
Q Consensus 80 ~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~---~~~~~~~g~~~~~~~~~~~~~~~p~~~~~ 154 (461)
+.+++.+++++.+++|..++.+.. .+.+.+++++.||+||+|||+. |..|++||...
T Consensus 73 ~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~------------------ 134 (335)
T 2zbw_A 73 EQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGERE------------------ 134 (335)
T ss_dssp HHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTT------------------
T ss_pred HHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhh------------------
Confidence 445567899998989999887653 4666677789999999999994 54445555321
Q ss_pred cccCCCCCCCCCCCEEE-eCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHH
Q 012545 155 RLTDFGVEGADAKNIFY-LREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 233 (461)
Q Consensus 155 ~~~~~~~~g~~~~~v~~-~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~ 233 (461)
+. ...+++ +.+.. ...+++++|+|+|++|+|+|..|.+.|.+|+++++.+.+.+ .++
T Consensus 135 ------~~---~~~~~~~~~~~~----------~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~ 192 (335)
T 2zbw_A 135 ------FE---GRGVYYAVKSKA----------EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEA 192 (335)
T ss_dssp ------TB---TTTEESSCSCGG----------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHH
T ss_pred ------cc---CcEEEEecCchh----------hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHH
Confidence 00 112221 12221 11478999999999999999999999999999999988765 467
Q ss_pred HHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CC--cEEecCEEEEccCCCCChhhhhc-ccccCCCcEE
Q 012545 234 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIE 307 (461)
Q Consensus 234 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G--~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~ 307 (461)
..+.+.+.+++.||+++++++++++.. ++.+..|++. +| +++++|.||+|+|++|+.++++. ++..++|+|.
T Consensus 193 ~~~~l~~~l~~~gv~v~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~ 270 (335)
T 2zbw_A 193 SVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIK 270 (335)
T ss_dssp HHHHHHHHHHTTSSEEETTEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEE
T ss_pred HHHHHHhccccCCeEEecCCcceeEcc--CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeee
Confidence 788888999999999999999999987 4555567765 77 67999999999999999887754 4555679999
Q ss_pred eCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 308 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 308 vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
||+++||+.|+|||+|||+..+.. ...+..|..||+.||.+|.+...+
T Consensus 271 vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 318 (335)
T 2zbw_A 271 VDTTMATSIPGVYACGDIVTYPGK-------LPLIVLGFGEAAIAANHAAAYANP 318 (335)
T ss_dssp CCTTCBCSSTTEEECSTTEECTTC-------CCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred eCCCCCCCCCCEEEeccccccCcc-------hhhhhhhHHHHHHHHHHHHHHhhh
Confidence 999999999999999999976431 157889999999999999887644
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=309.56 Aligned_cols=301 Identities=19% Similarity=0.174 Sum_probs=209.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCcccccccCCCCCCCCCCceeec-CCCCCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPEGTARLPGFHVCV-GSGGERLL 78 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 78 (461)
|++.|||+||||||||++||.+|+++|++ |+|+|++.... ...+..++..+ .+++++.... +.+.....
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~---v~liE~~~~gg~~~~G~~~~~~~i-----~~~~g~~~~i~~~~l~~~~ 72 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLK---PVMYEGFMAGGVAAGGQLTTTTII-----ENFPGFPNGIDGNELMMNM 72 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSGGGCCTTCGGGGSSEE-----CCSTTCTTCEEHHHHHHHH
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCcccCCCcCChHHh-----hhccCCcccCCHHHHHHHH
Confidence 56689999999999999999999999987 99999985321 11111111111 2233332111 00111233
Q ss_pred HhHHHHcCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccc
Q 012545 79 PEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRL 156 (461)
Q Consensus 79 ~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~ 156 (461)
.+.+.+.++++... .+....... ..+.+.++.++.||++|||||++|..|.+||....
T Consensus 73 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~------------------- 132 (314)
T 4a5l_A 73 RTQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKY------------------- 132 (314)
T ss_dssp HHHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHH-------------------
T ss_pred HHHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccc-------------------
Confidence 44556788888776 555555443 34667788889999999999999987777776420
Q ss_pred cCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHH
Q 012545 157 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 236 (461)
Q Consensus 157 ~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~ 236 (461)
....+... ...... ....++++++|||+|++|+|+|..|+++|.+||++++.+.... ...
T Consensus 133 --------~~~~~~~~---~~~~~~---~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~--- 192 (314)
T 4a5l_A 133 --------WQNGVSAC---AICDGA---VPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKT--- 192 (314)
T ss_dssp --------BTTTEESC---HHHHTT---SGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---
T ss_pred --------cccceeee---hhhhhh---hhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cch---
Confidence 00111111 111111 1112578999999999999999999999999999998876543 222
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe-----CCCcEEecCEEEEccCCCCChhhhhcccccCCCcEEeCCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-----KDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF 311 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-----~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~ 311 (461)
...+.+...+++.+....+.++... ++....+.+ .+++++++|.|++++|++||++++...+...++++.||++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~~~ 271 (314)
T 4a5l_A 193 MQERVLNHPKIEVIWNSELVELEGD-GDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEG 271 (314)
T ss_dssp HHHHHHTCTTEEEECSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCBT
T ss_pred hhhhhhcccceeeEeeeeeEEEEee-eeccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeEeCCC
Confidence 3345566778899988888888863 333333333 3456899999999999999999998777665555669999
Q ss_pred CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 312 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 312 ~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+|||+|+|||+|||++.+. .++..|..||+.||.++...+
T Consensus 272 ~~Ts~pgIyA~GDv~~~~~---------~~~~~A~~~G~~AA~~~~~yL 311 (314)
T 4a5l_A 272 PKTSVDGVFACGDVCDRVY---------RQAIVAAGSGCMAALSCEKWL 311 (314)
T ss_dssp TBCSSTTEEECSTTTCSSC---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEEeccCCcc---------hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 467789999999999987543
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=306.24 Aligned_cols=302 Identities=20% Similarity=0.204 Sum_probs=225.6
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeec-CCCCCCCCH
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLP 79 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (461)
|||+.+||+|||||+||+++|..|++.|++ |+|+|+.... ..+........++.+.... .........
T Consensus 1 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (320)
T 1trb_A 1 GTTKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKG--------GQLTTTTEVENWPGDPNDLTGPLLMERMH 69 (320)
T ss_dssp CCEEEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSSTT--------GGGGGCSBCCCSTTCCSSCBHHHHHHHHH
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEccCCCC--------ceEecchhhhhCCCCCCCCCHHHHHHHHH
Confidence 455679999999999999999999999887 9999975321 1111111112222221100 001112234
Q ss_pred hHHHHcCcEEEcCCeEEEEeCCCCEEE-cCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccC
Q 012545 80 EWYKEKGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTD 158 (461)
Q Consensus 80 ~~~~~~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (461)
.++++.+++++.+ .+..++.+.+.+. +.++.++.||+||+|||+.|.+|.+||...+
T Consensus 70 ~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~--------------------- 127 (320)
T 1trb_A 70 EHATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAF--------------------- 127 (320)
T ss_dssp HHHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHT---------------------
T ss_pred HHHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHh---------------------
Confidence 4566789999998 4889987665544 5667789999999999999988777775320
Q ss_pred CCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHH
Q 012545 159 FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 238 (461)
Q Consensus 159 ~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~ 238 (461)
....++.+...+.. + ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+. .++.+.+.+
T Consensus 128 ------~~~~~~~~~~~~~~------~--~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l 190 (320)
T 1trb_A 128 ------KGRGVSACATSDGF------F--YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRL 190 (320)
T ss_dssp ------BTTTEESCHHHHGG------G--GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHH
T ss_pred ------CCceeEecccCCcc------c--cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHH
Confidence 01223322222211 1 157899999999999999999999999999999988764 377888888
Q ss_pred HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC----C--cEEecCEEEEccCCCCChhhhhcccccCCCcEEeCCCC
Q 012545 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD----G--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFF 312 (461)
Q Consensus 239 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~----G--~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~ 312 (461)
.+.+++.||+++++++++++..+ ++.+..|++.+ | +++++|.||+|+|++|+.++++.++..++|+|.||+++
T Consensus 191 ~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~ 269 (320)
T 1trb_A 191 MDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269 (320)
T ss_dssp HHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSS
T ss_pred HHhcccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCc
Confidence 89999999999999999999873 44565677654 4 57999999999999999998875565568899999987
Q ss_pred -----CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 313 -----KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 313 -----~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
+|+.|+|||+|||+..+. ..+..|..+|+.||.+|...+.+
T Consensus 270 ~~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~l~~ 315 (320)
T 1trb_A 270 HGNATQTSIPGVFAAGDVMDHIY---------RQAITSAGTGCMAALDAERYLDG 315 (320)
T ss_dssp SSCTTBCSSTTEEECGGGGCSSS---------CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccccCCCCCEEEcccccCCcc---------hhhhhhhccHHHHHHHHHHHHHh
Confidence 899999999999998752 46888999999999999876643
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=315.15 Aligned_cols=318 Identities=18% Similarity=0.179 Sum_probs=239.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|||||||+||++||.+|++.+. +.+|+|||+++.+.| +++...+.... ..... .....+.+.+
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~--~p~~~~v~~g~--~~~~~---------~~~~~~~~~~ 67 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYT--CYMSNEVIGGD--RELAS---------LRVGYDGLRA 67 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEEC--STTHHHHHHTS--SCGGG---------GEECSHHHHH
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCC--ccCHHHHhcCC--CCHHH---------HhhCHHHHHH
Confidence 4789999999999999999999874 567999999975432 22222222111 00000 1123455667
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.+++++.+ +|+.+|++.+.+.+.+++++.||+||+|||+++.+|.+||+.+. .
T Consensus 68 ~gv~~i~~-~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~--------------------------~ 120 (401)
T 3vrd_B 68 HGIQVVHD-SALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEA--------------------------L 120 (401)
T ss_dssp TTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSG--------------------------G
T ss_pred CCCEEEEe-EEEEEEccCcEEEecccceeecceeeeccCCccccCCccCchhh--------------------------c
Confidence 89999987 89999999999999999999999999999999988888887531 0
Q ss_pred CCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCH-----------HHHHHHHHHHHCC--CcEEEEccCCccCC-ccc
Q 012545 165 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGY-----------IGLELSAALKINN--IDVSMVYPEPWCMP-RLF 230 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~-----------~g~e~a~~l~~~g--~~Vtli~~~~~~~~-~~~ 230 (461)
....++.+++.+++..+++.++.......+|++++. .+.+++..+++.+ .+|+++++.+.+.. ..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~ 200 (401)
T 3vrd_B 121 AAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQF 200 (401)
T ss_dssp GGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHH
T ss_pred ccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccc
Confidence 112345567788888888888876555555554332 3456666666655 68999998887643 225
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhcccccCCCcEEeCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD 310 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~ 310 (461)
++.+.+.+.+.+++.||+++++++++.++.+.+. ..+++++|+++++|.+++++|.+|+..+.+.++..++|+|.||+
T Consensus 201 ~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~--~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~ 278 (401)
T 3vrd_B 201 TKGWERLYGFGTENALIEWHPGPDAAVVKTDTEA--MTVETSFGETFKAAVINLIPPQRAGKIAQSASLTNDSGWCPVDI 278 (401)
T ss_dssp HHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTT--TEEEETTSCEEECSEEEECCCEEECHHHHHTTCCCTTSSBCBCT
T ss_pred cHHHHHHHHHHHHhcCcEEEeCceEEEEEecccc--eEEEcCCCcEEEeeEEEEecCcCCchhHhhccccccCCCEEECC
Confidence 6777777788889999999999999999874444 46889999999999999999999986555667766889999998
Q ss_pred C-CC-CCCCCEEEeCccccc-CccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCe
Q 012545 311 F-FK-TSADDVYAVGDVATF-PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY 373 (461)
Q Consensus 311 ~-~~-t~~~~vya~GD~~~~-~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~ 373 (461)
+ || |++|||||+|||++. +.+ ++...|.+||+++|+||++.+.|+.+.++.+..+
T Consensus 279 ~tl~~t~~p~VfAiGDva~~~~~p--------k~a~~A~~qa~v~A~ni~~~l~G~~~~~~~y~~~ 336 (401)
T 3vrd_B 279 RTFESSLQPGIHVIGDACNAAPMP--------KSAYSANSQAKVAAAAVVALLKGEEPGTPSYLNT 336 (401)
T ss_dssp TTCBBSSSTTEEECGGGBCCTTSC--------BSHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEE
T ss_pred CcceecCCCCEEEecccccCCCCC--------chHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCe
Confidence 6 66 799999999999864 332 6788999999999999998776655444444433
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=298.67 Aligned_cols=294 Identities=19% Similarity=0.227 Sum_probs=213.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeec-CCCCCCCCHhHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWY 82 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (461)
+.+||+|||||+||+++|..|++.|++ |+|+|++.... .+........++++.... .......+.+.+
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLS---TLILEKGMPGG--------QIAWSEEVENFPGFPEPIAGMELAQRMHQQA 75 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTG--------GGGGCSCBCCSTTCSSCBCHHHHHHHHHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCc---EEEEeCCCCCc--------ccccccccccCCCCCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999999987 99999983211 111111111122221100 000112234556
Q ss_pred HHcCcEEEcCCeEEEEeCC--C---CEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCccccccccc
Q 012545 83 KEKGIELILSTEIVRADIA--S---KTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLT 157 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~--~---~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~ 157 (461)
++.+++++.+ ++..++.+ . ..+.+.+++++.||++|+|||+.|.+|.+||...
T Consensus 76 ~~~gv~~~~~-~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~--------------------- 133 (325)
T 2q7v_A 76 EKFGAKVEMD-EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDN--------------------- 133 (325)
T ss_dssp HHTTCEEEEC-CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTT---------------------
T ss_pred HHcCCEEEee-eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhh---------------------
Confidence 6789999884 89988875 3 3566777888999999999999997766666431
Q ss_pred CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHH
Q 012545 158 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 237 (461)
Q Consensus 158 ~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~ 237 (461)
+. ...++.+...+.. ...+++++|+|+|++|+|+|..|.+.|.+|+++++.+.+.. ++.+.
T Consensus 134 ---~~---~~~~~~~~~~~~~--------~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~-- 194 (325)
T 2q7v_A 134 ---FW---GKGVSTCATCDGF--------FYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVAQ-- 194 (325)
T ss_dssp ---TB---TTTEESCHHHHGG--------GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHHH--
T ss_pred ---cc---CceEEEeccCCHH--------HcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHHH--
Confidence 00 1223322221111 11578999999999999999999999999999999887642 33332
Q ss_pred HHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCC
Q 012545 238 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF 311 (461)
Q Consensus 238 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~ 311 (461)
.+.+++.||+++++++++++.. ++.+..|++. +|+ ++++|.||+|+|++|+.++++..+.. ++|+|.||++
T Consensus 195 -~~l~~~~gv~i~~~~~v~~i~~--~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~ 271 (325)
T 2q7v_A 195 -ARAFANPKMKFIWDTAVEEIQG--ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDE 271 (325)
T ss_dssp -HHHHTCTTEEEECSEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTT
T ss_pred -HHHHhcCCceEecCCceEEEcc--CCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCC
Confidence 2333446999999999999987 4555567765 675 79999999999999999888655544 5789999999
Q ss_pred CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccC
Q 012545 312 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 361 (461)
Q Consensus 312 ~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 361 (461)
+||+.|+|||+|||+..+. +.+..|..||+.||.+|...+.
T Consensus 272 ~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~l~ 312 (325)
T 2q7v_A 272 IYTNIPMLFAAGDVSDYIY---------RQLATSVGAGTRAAMMTERQLA 312 (325)
T ss_dssp TBCSSTTEEECSTTTCSSC---------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEeecccCccH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998642 5788999999999999987653
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=297.79 Aligned_cols=292 Identities=19% Similarity=0.237 Sum_probs=213.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+|||||+||+++|..|++.|++ |+|+|+.....+ ........++.............+.+.+++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~---v~li~~~~gG~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFGGQI---------LDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTTGGG---------GGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCcee---------ccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence 37999999999999999999999887 999986421111 000000111111000000111233455667
Q ss_pred cCcEEEcCCeEEEEeCC-----CCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 85 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
.+++++.++++..++.+ ...+.+.+++++.||++|+|||+.|..|.+||..++
T Consensus 69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~---------------------- 126 (310)
T 1fl2_A 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQY---------------------- 126 (310)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTT----------------------
T ss_pred cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhc----------------------
Confidence 89999999899999865 345777788789999999999999976666665320
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
....++.+... .... ..+++++|+|+|++|+|+|..|++.+.+|+++++.+.+. +++ .+.
T Consensus 127 -----~~~~~~~~~~~------~~~~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~ 186 (310)
T 1fl2_A 127 -----RTKGVTYCPHC------DGPL--FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQ 186 (310)
T ss_dssp -----BTTTEESCHHH------HGGG--GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH----HHH
T ss_pred -----ccceeEEeccC------cHhh--cCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH----HHH
Confidence 11233322211 1111 257899999999999999999999999999999988763 343 344
Q ss_pred HHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC---Cc--EEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCC
Q 012545 240 GYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFF 312 (461)
Q Consensus 240 ~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~--~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~ 312 (461)
+.+++ .||+++++++++++.. +++++..+++.+ |+ ++++|.||+|+|++|+.++++..+.. .+|+|.||+++
T Consensus 187 ~~l~~~~gv~v~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~ 265 (310)
T 1fl2_A 187 DKLRSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKC 265 (310)
T ss_dssp HHHHTCTTEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTC
T ss_pred HHHhhCCCeEEecCCceEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCC
Confidence 56666 6999999999999987 345655666653 53 68999999999999999888655554 57899999999
Q ss_pred CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 313 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 313 ~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
||+.|+|||+|||+..+. +.+..|..||+.||.+|...+
T Consensus 266 ~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~l 304 (310)
T 1fl2_A 266 ETNVKGVFAAGDCTTVPY---------KQIIIATGEGAKASLSAFDYL 304 (310)
T ss_dssp BCSSTTEEECSTTBSCSS---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeecccCCcc---------hhhhhhHhhHHHHHHHHHHHH
Confidence 999999999999998753 467889999999999998755
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=297.65 Aligned_cols=295 Identities=22% Similarity=0.237 Sum_probs=212.2
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhH
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
|+..+||+|||||+||+++|..|++.|++ |+|+|+..... .+........++++...........+.+.
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGFS---VAILDKAVAGG--------LTAEAPLVENYLGFKSIVGSELAKLFADH 81 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTG--------GGGGCSCBCCBTTBSSBCHHHHHHHHHHH
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCCc--------cccccchhhhcCCCcccCHHHHHHHHHHH
Confidence 33468999999999999999999999987 99999963211 01111111122222000000011223445
Q ss_pred HHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
+++.+++++. .++..++.+.+ .+.+ ++.++.||++|+|+|+.+.+|.+||...
T Consensus 82 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~----------------------- 136 (319)
T 3cty_A 82 AANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESE----------------------- 136 (319)
T ss_dssp HHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTT-----------------------
T ss_pred HHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHH-----------------------
Confidence 5668999988 58999887665 4555 5567999999999999987666665421
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
+ ....++.....+.. . ..+++++|+|+|++|+|+|..|.+.+.+|+++++.+.+.. ++. +.
T Consensus 137 -~---~~~~~~~~~~~~~~------~--~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~~----l~ 197 (319)
T 3cty_A 137 -Y---FGKGTSYCSTCDGY------L--FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---ENA----YV 197 (319)
T ss_dssp -T---BTTTEESCHHHHGG------G--GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CHH----HH
T ss_pred -h---CCceEEEEEecchh------h--cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CHH----HH
Confidence 0 01223322222111 1 1478999999999999999999999999999999887642 333 44
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCC
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFF 312 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~ 312 (461)
+.+++.||+++++++++++.. +++++..+.+. +|+ ++++|.||+|+|++|+.++++. ++.. ++|+|.||+++
T Consensus 198 ~~l~~~gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~ 276 (319)
T 3cty_A 198 QEIKKRNIPYIMNAQVTEIVG-DGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQ 276 (319)
T ss_dssp HHHHHTTCCEECSEEEEEEEE-SSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTC
T ss_pred HHHhcCCcEEEcCCeEEEEec-CCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCC
Confidence 556688999999999999987 34445566664 675 6999999999999999988754 3555 57899999999
Q ss_pred CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccC
Q 012545 313 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 361 (461)
Q Consensus 313 ~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 361 (461)
||+.|+|||+|||+..+. ..+..|..||+.||.+|...+.
T Consensus 277 ~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 277 RTSVPGVYAAGDVTSGNF---------AQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp BCSSTTEEECSTTBTTCC---------CCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCEEEeecccCcch---------hhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998642 5688999999999999987654
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=303.13 Aligned_cols=305 Identities=21% Similarity=0.289 Sum_probs=220.4
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCC-CCCCCCCceeecCCCCCCCCHh
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE-GTARLPGFHVCVGSGGERLLPE 80 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
|++.+||+|||||++|+++|..|++.|++ |+|||+++..... + ..+.+. .....+.+...........+.+
T Consensus 11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (360)
T 3ab1_A 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNIS---CRIIESMPQLGGQ-L----AALYPEKHIYDVAGFPEVPAIDLVESLWA 82 (360)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHH-H----HHTCTTSEECCSTTCSSEEHHHHHHHHHH
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCc-c----cccCCCcccccCCCCCCCCHHHHHHHHHH
Confidence 34568999999999999999999999887 9999998653210 0 000000 0011111110000011112334
Q ss_pred HHHHcCcEEEcCCeEEEEeCCCC---EEEcCCCcEEecCEEEEccCCC---cccccccc-ccccCccccccccCCccccc
Q 012545 81 WYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGST---VSITSLTS-IRSKHCLCCFFLRTLPLFQV 153 (461)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~liiAtG~~---~~~~~~~g-~~~~~~~~~~~~~~~p~~~~ 153 (461)
.+++.+++++.+++|..++...+ .|.+.+++++.||+||+|||+. |..|.+|| +.+
T Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~----------------- 145 (360)
T 3ab1_A 83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDH----------------- 145 (360)
T ss_dssp HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTT-----------------
T ss_pred HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhh-----------------
Confidence 45567899999989999987643 5777788789999999999994 44444444 321
Q ss_pred ccccCCCCCCCCCCCEEE-eCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCH
Q 012545 154 LRLTDFGVEGADAKNIFY-LREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA 232 (461)
Q Consensus 154 ~~~~~~~~~g~~~~~v~~-~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~ 232 (461)
+. ...+++ +++.. ...+++++|||+|++|+|+|..|.+.+.+|+++++.+.+.+. +
T Consensus 146 -------~~---~~~v~~~~~~~~----------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~---~ 202 (360)
T 3ab1_A 146 -------LT---GSSVYYAVKSVE----------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---G 202 (360)
T ss_dssp -------TB---TTTEESSCSCGG----------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC---S
T ss_pred -------Cc---CceEEEecCCHH----------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC---H
Confidence 01 112321 12221 114789999999999999999999999999999998877652 4
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEEEEccCCCCChhhhhc-ccccCCCcEE
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIE 307 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~ 307 (461)
+..+.+.+.+++.||+++++++++++.. +++.+..|++. +| +++++|.||+|+|++|+.++++. ++..++|+|.
T Consensus 203 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~ 281 (360)
T 3ab1_A 203 KTAHEVERARANGTIDVYLETEVASIEE-SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALV 281 (360)
T ss_dssp HHHHSSHHHHHHTSEEEESSEEEEEEEE-ETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEE
T ss_pred HHHHHHHHHhhcCceEEEcCcCHHHhcc-CCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeee
Confidence 5677788888999999999999999987 34555566664 77 57999999999999999987754 4555679999
Q ss_pred eCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 308 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 308 vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
||+++||+.|+|||+|||+..+.. .+.+..|..||+.||.+|.+...+
T Consensus 282 vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 329 (360)
T 3ab1_A 282 VDSHMKTSVDGLYAAGDIAYYPGK-------LKIIQTGLSEATMAVRHSLSYIKP 329 (360)
T ss_dssp CCTTSBCSSTTEEECSTTEECTTC-------CCSHHHHHHHHHHHHHHHHHHHSC
T ss_pred ecCCCcCCCCCEEEecCccCCCCc-------cceeehhHHHHHHHHHHHHhhcCC
Confidence 999999999999999999986531 167889999999999999876643
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=303.85 Aligned_cols=301 Identities=21% Similarity=0.192 Sum_probs=219.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeec-CCCCCCCCHhHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWY 82 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (461)
+++||+|||||++|+++|..|++.|++ |+|+|+.+... ..+...+........++.+.... .......+...+
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~vie~~~~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIK---PILYEGMMANG---IAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQS 94 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTT---BCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCCC---CCcCcccccchhhcccCCCcccCCHHHHHHHHHHHH
Confidence 468999999999999999999999987 99999975211 11112222211122222221100 011122345566
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEc-----CCCcEEecCEEEEccCCCccccccccccccCccccccccCCccccccccc
Q 012545 83 KEKGIELILSTEIVRADIASKTLLS-----ATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLT 157 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~-----~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~ 157 (461)
++.+++++.++ +..++.+.+.+.+ .++.++.||++|+|||+.+..|.+||...+
T Consensus 95 ~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~-------------------- 153 (338)
T 3itj_A 95 TKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETY-------------------- 153 (338)
T ss_dssp HHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHH--------------------
T ss_pred HHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhc--------------------
Confidence 77899999986 9999988776544 466779999999999999987777775420
Q ss_pred CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHH
Q 012545 158 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 237 (461)
Q Consensus 158 ~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~ 237 (461)
....++...... ..+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+ .+.
T Consensus 154 -------~~~~~~~~~~~~------~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~ 213 (338)
T 3itj_A 154 -------WQKGISACAVCD------GAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STI 213 (338)
T ss_dssp -------BTTTEESCHHHH------TTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHH
T ss_pred -------cCccEEEchhcc------cchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHH
Confidence 011222221111 111112578999999999999999999999999999999888764 233
Q ss_pred HHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCC-----CcEEecCEEEEccCCCCChhhhhccccc-CCCcEEe-C
Q 012545 238 YEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKD-----GRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIET-D 309 (461)
Q Consensus 238 ~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~-----G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~v-d 309 (461)
+.+.+.+. ||++++++++++++. +++.+..|++.+ ++++++|.||+|+|++|+.++++.++.. ++|+|.| |
T Consensus 214 ~~~~l~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~ 292 (338)
T 3itj_A 214 MQKRAEKNEKIEILYNTVALEAKG-DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVP 292 (338)
T ss_dssp HHHHHHHCTTEEEECSEEEEEEEE-SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCT
T ss_pred HHHHHHhcCCeEEeecceeEEEEc-ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcC
Confidence 44555554 999999999999987 345566677765 4689999999999999999988777766 5788885 8
Q ss_pred CCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccC
Q 012545 310 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 361 (461)
Q Consensus 310 ~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 361 (461)
++++|+.|+|||+|||+..+. +.+..|..+|+.||.+|...+.
T Consensus 293 ~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~l~ 335 (338)
T 3itj_A 293 GSSLTSVPGFFAAGDVQDSKY---------RQAITSAGSGCMAALDAEKYLT 335 (338)
T ss_dssp TSSBCSSTTEEECGGGGCSSC---------CCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCEEEeeccCCCCc---------cceeeehhhhHHHHHHHHHHHh
Confidence 899999999999999998532 5788999999999999987654
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=295.83 Aligned_cols=291 Identities=19% Similarity=0.181 Sum_probs=212.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecC-CCCCCCCHhHHH
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPEWYK 83 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (461)
+||+|||||++|+++|..|++.|+ + |+|+|++.... .+........++.+..... ......+.+.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 70 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKN---AVLFEKGMPGG--------QITGSSEIENYPGVKEVVSGLDFMQPWQEQCF 70 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSS---EEEECSSSTTC--------GGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHH
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCc---EEEEcCCCCCc--------ccccccccccCCCCcccCCHHHHHHHHHHHHH
Confidence 699999999999999999999988 6 99999964211 0111111111222211000 001112344556
Q ss_pred HcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCC
Q 012545 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV 161 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (461)
+.+++++. .++..++.+.+ .+.+.+++++.||++|+|||+.|.+|++||..+ +
T Consensus 71 ~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~------------------------~ 125 (311)
T 2q0l_A 71 RFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESE------------------------Y 125 (311)
T ss_dssp TTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHH------------------------H
T ss_pred HcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhh------------------------c
Confidence 67999988 58999987666 566677888999999999999997777777532 0
Q ss_pred CCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHH
Q 012545 162 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 241 (461)
Q Consensus 162 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~ 241 (461)
. ...++++...+.. + ..+++++|+|+|++|+|+|..|.+.|.+|+++++.+.+. .++.+ .+.
T Consensus 126 ~---~~~~~~~~~~~~~------~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~----~~~ 187 (311)
T 2q0l_A 126 W---GKGVSTCATCDGF------F--YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPIT----LEH 187 (311)
T ss_dssp B---TTTEESCHHHHGG------G--GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHHH----HHH
T ss_pred c---CCcEEEeecCChh------h--cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHHH----HHH
Confidence 0 1223332222211 1 157899999999999999999999999999999988763 34443 334
Q ss_pred HH-hcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCCCChhhhhcc-----ccc-CCCcEEeC
Q 012545 242 YA-NKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLFKGQ-----VAE-NKGGIETD 309 (461)
Q Consensus 242 l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~~~~~~~~-----~~~-~~g~i~vd 309 (461)
+. +.||+++++++++++..+ ++.+..+++. +|+ ++++|.||+|+|++|++++++.. +.. ++|+|.||
T Consensus 188 l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd 266 (311)
T 2q0l_A 188 AKNNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVD 266 (311)
T ss_dssp HHTCTTEEEETTEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCC
T ss_pred HhhCCCeEEEeCCEEEEEECC-CCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeC
Confidence 44 479999999999999873 3444456665 675 79999999999999999888643 554 57899999
Q ss_pred CCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 310 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 310 ~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+++||+.|+|||+|||+..+. +.+..|..||+.||.||...+
T Consensus 267 ~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~l 308 (311)
T 2q0l_A 267 FSMKTNVQGLFAAGDIRIFAP---------KQVVCAASDGATAALSVISYL 308 (311)
T ss_dssp TTCBCSSTTEEECSTTBTTCC---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCeEEcccccCcch---------HHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999998632 578899999999999997643
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=295.07 Aligned_cols=292 Identities=18% Similarity=0.145 Sum_probs=212.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEE-EeCCCCCCCCCCcccccccCCCCCCCCCCceeec-CCCCCCCCHhH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAI-ISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEW 81 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~v-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (461)
+++||+|||||+||++||..|++.|++ |+| +|++... ..+........+|.+.... .......+...
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~li~e~~~~g--------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLK---NVVMFEKGMPG--------GQITSSSEIENYPGVAQVMDGISFMAPWSEQ 71 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCS---CEEEECSSSTT--------GGGGGCSCBCCSTTCCSCBCHHHHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCC---eEEEEeCCCCC--------ceeeeeceeccCCCCCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999987 899 9995321 1111111112223222000 00111233455
Q ss_pred HHHcCcEEEcCCeEEEEeCCC--CEEE--c-CCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccc
Q 012545 82 YKEKGIELILSTEIVRADIAS--KTLL--S-ATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRL 156 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~--~~v~--~-~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~ 156 (461)
+++.+++++.+ ++..+ .+. +.+. + .++ ++.||++|+|||+.|..|.+||+..
T Consensus 72 ~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~-------------------- 128 (315)
T 3r9u_A 72 CMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDE-------------------- 128 (315)
T ss_dssp HTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTT--------------------
T ss_pred HHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhh--------------------
Confidence 56689999998 88888 444 3333 3 334 8999999999999997777777532
Q ss_pred cCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHH
Q 012545 157 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 236 (461)
Q Consensus 157 ~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~ 236 (461)
+ ....++........ ...+++++|+|+|++++|+|..|.+.+.+|+++++.+.+.. +++
T Consensus 129 ----~---~~~~~~~~~~~~~~--------~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~--- 187 (315)
T 3r9u_A 129 ----F---FGKGVSTCATCDGF--------FYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---APS--- 187 (315)
T ss_dssp ----T---BTTTEESCHHHHGG--------GGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CHH---
T ss_pred ----c---CCCeEEeeeccccc--------ccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CHH---
Confidence 0 01223322211111 11578999999999999999999999999999999887632 443
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CCc--EEecCEEEEccCCCCChhhhhc-----cccc-CCCcE
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVGGRPLISLFKG-----QVAE-NKGGI 306 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G~--~i~aD~vi~a~G~~p~~~~~~~-----~~~~-~~g~i 306 (461)
.+.+.+++.||+++++++++++.. +++.+..+++. +|+ ++++|.||+|+|++|+.++++. ++.. ++|+|
T Consensus 188 ~~~~~~~~~gv~~~~~~~v~~i~~-~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i 266 (315)
T 3r9u_A 188 TVEKVKKNEKIELITSASVDEVYG-DKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQV 266 (315)
T ss_dssp HHHHHHHCTTEEEECSCEEEEEEE-ETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCB
T ss_pred HHHHHHhcCCeEEEeCcEEEEEEc-CCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcE
Confidence 344556789999999999999987 34455566665 785 7999999999999999998876 4665 56999
Q ss_pred EeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 307 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 307 ~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.||+++||+.|+|||+|||+..+. +.+..|..||+.||.+|....
T Consensus 267 ~vd~~~~t~~~~v~a~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 267 SVDLKMQTSVAGLFAAGDLRKDAP---------KQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp CCCTTCBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCcccCCCCEEEeecccCCch---------hhhhhHHhhHHHHHHHHHHHH
Confidence 999999999999999999996432 578899999999999998654
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=300.94 Aligned_cols=297 Identities=19% Similarity=0.241 Sum_probs=217.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCC-CCCCCCCceeecCCCCCCCCHhHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE-GTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
.+||+|||||+||++||..|++.|++ |+|+|+++..... . ....+. ....++.+...........+.+.++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gG~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQAS---VKIIESLPQLGGQ---L--SALYPEKYIYDVAGFPKIRAQELINNLKEQMA 78 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHH---H--HHHCTTSEECCSTTCSSEEHHHHHHHHHHHHT
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCCCCce---e--hhcCCCceEeccCCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999887 9999998753200 0 000000 0112222211111111123445556
Q ss_pred HcCcEEEcCCeEEEEeCCCC---EEEcCCCcEEecCEEEEccCC---CccccccccccccCccccccccCCccccccccc
Q 012545 84 EKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGS---TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLT 157 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~liiAtG~---~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~ 157 (461)
+.+++++.+++|..++...+ .+.+.+++ +.||+||+|||+ .|..|.+||...+
T Consensus 79 ~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~-------------------- 137 (332)
T 3lzw_A 79 KFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQY-------------------- 137 (332)
T ss_dssp TSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGG--------------------
T ss_pred HhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhc--------------------
Confidence 67999999999999998766 67777776 999999999999 7877777775420
Q ss_pred CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHH
Q 012545 158 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 237 (461)
Q Consensus 158 ~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~ 237 (461)
++ ..++. .+.+...+ ++++++|+|+|.+|+|+|..|.+.+.+|+++++.+.+.+ .+..
T Consensus 138 ----~g---~~~~~--~~~~~~~~-------~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~~---- 195 (332)
T 3lzw_A 138 ----EG---KNLHY--FVDDLQKF-------AGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEHS---- 195 (332)
T ss_dssp ----BT---TTEES--SCSCGGGG-------BTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHHH----
T ss_pred ----cC---ceEEE--ecCCHHHc-------CCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHHH----
Confidence 11 11211 11111111 478999999999999999999999999999999988754 2322
Q ss_pred HHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-----CcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCC
Q 012545 238 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-----GRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDF 311 (461)
Q Consensus 238 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-----G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~ 311 (461)
.+.|++.||+++++++++++..+++ ...+++.+ ++++++|.||+|+|++|+.++++. ++..++|+|.||++
T Consensus 196 -~~~l~~~gv~~~~~~~v~~i~~~~~--~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~ 272 (332)
T 3lzw_A 196 -VENLHASKVNVLTPFVPAELIGEDK--IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKST 272 (332)
T ss_dssp -HHHHHHSSCEEETTEEEEEEECSSS--CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTT
T ss_pred -HHHHhcCCeEEEeCceeeEEecCCc--eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCC
Confidence 3457889999999999999987322 34566655 457999999999999999987754 45557899999999
Q ss_pred CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 312 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 312 ~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
+||+.|+|||+|||+..+.. .+.+..|..||+.||.+|.....+
T Consensus 273 ~~t~~~~vya~GD~~~~~~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 316 (332)
T 3lzw_A 273 METNIEGFFAAGDICTYEGK-------VNLIASGFGEAPTAVNNAKAYMDP 316 (332)
T ss_dssp SBCSSTTEEECGGGEECTTC-------CCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred CceecCCEEEccceecCCCC-------cceEeeehhhHHHHHHHHHHhhCh
Confidence 99999999999999965421 167889999999999999876644
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=294.12 Aligned_cols=293 Identities=18% Similarity=0.207 Sum_probs=214.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
++||+|||||+||+++|..|++.|++ |+|+|++ ... .+........++.+...........+.+.+++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~-~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLK---TLVIGET-PGG--------QLTEAGIVDDYLGLIEIQASDMIKVFNKHIEK 82 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS-TTG--------GGGGCCEECCSTTSTTEEHHHHHHHHHHHHHT
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCc---EEEEecc-CCC--------eecccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999987 9999998 211 11111111122222111111111234455667
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
.+++++. ++|..++.+.+ .+.+.++.++.||+||+|||+.|..|.+||...
T Consensus 83 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~-------------------------- 135 (323)
T 3f8d_A 83 YEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQE-------------------------- 135 (323)
T ss_dssp TTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTT--------------------------
T ss_pred cCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhh--------------------------
Confidence 8999999 79999987654 467777788999999999999997766666432
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
.....++.. ...+. ....+++++|+|+|++++|+|..|.+.+.+|+++++.+.+++ +++ .+.+.+
T Consensus 136 -~~~~~~~~~-~~~~~-------~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~ 200 (323)
T 3f8d_A 136 -FAGRGISYC-SVADA-------PLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVK 200 (323)
T ss_dssp -TBTTTEESC-HHHHG-------GGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHH
T ss_pred -hcCCceEEe-ccCCH-------hHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHH
Confidence 001233321 11111 112578999999999999999999999999999999988765 332 233444
Q ss_pred HhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---Cc--EEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCCC
Q 012545 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTS 315 (461)
Q Consensus 243 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~--~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~ 315 (461)
++.||+++++++++++.. ++.+..+++.+ |+ ++++|.||+|+|++|+.++++. ++.. ++|+|.||+++||+
T Consensus 201 ~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~ 278 (323)
T 3f8d_A 201 KKPNVEFVLNSVVKEIKG--DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTS 278 (323)
T ss_dssp TCTTEEEECSEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCS
T ss_pred hCCCcEEEeCCEEEEEec--cCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceec
Confidence 456999999999999987 45566677765 76 7999999999999999887754 4665 67999999999999
Q ss_pred CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 316 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 316 ~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.|+|||+|||+..+. ..+.+..|..||+.||.+|....
T Consensus 279 ~~~vya~GD~~~~~~-------~~~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 279 VPGVFAAGDCTSAWL-------GFRQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp STTEEECSTTBSTTT-------TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEcceecCCCC-------cccceeehhhHHHHHHHHHHHHH
Confidence 999999999998630 11678999999999999998654
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=308.32 Aligned_cols=310 Identities=16% Similarity=0.154 Sum_probs=221.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|||||||+||++||..|++.+ ++.+|+|||+++++.|. |.+.. +.... ..... ......+++++
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~-~~~~VtlI~~~~~~~~~-p~l~~-v~~g~--~~~~~--------i~~~~~~~~~~ 68 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLM-PDLKITLISDRPYFGFT-PAFPH-LAMGW--RKFED--------ISVPLAPLLPK 68 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHC-TTCEEEEECSSSEEECG-GGHHH-HHHTC--SCGGG--------SEEESTTTGGG
T ss_pred CCcEEEECCCHHHHHHHHHHhccC-cCCeEEEEcCCCCCccC-ccHHH-HhcCC--CCHHH--------hhhcHHHHHHH
Confidence 358999999999999999999987 35679999999876663 33221 11100 00000 01234556777
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.+++++.+ +|+.||++.++|.+.+|+++.||+||||||+++. +.+||+.
T Consensus 69 ~gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i~G~~----------------------------- 117 (430)
T 3hyw_A 69 FNIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FGAEGQE----------------------------- 117 (430)
T ss_dssp GTEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CCSBTHH-----------------------------
T ss_pred CCcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CCccCcc-----------------------------
Confidence 89999987 8999999999999999999999999999999863 3345542
Q ss_pred CCCCEEEeCCHHHHHHHHHHHHhc-CCCcEEEECCCH------HHHHHH----HHHHHCC----CcEEEEccCCccCC--
Q 012545 165 DAKNIFYLREIDDADKLVEAIKAK-KNGKAVVVGGGY------IGLELS----AALKINN----IDVSMVYPEPWCMP-- 227 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~~~-~~~~v~VvG~G~------~g~e~a----~~l~~~g----~~Vtli~~~~~~~~-- 227 (461)
++.+.+++.+++.++++.+++. ..+.++|+|++. .+.|++ ..+.+.+ .+|++++..+.+..
T Consensus 118 --e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~ 195 (430)
T 3hyw_A 118 --ENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFG 195 (430)
T ss_dssp --HHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTT
T ss_pred --cCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhcc
Confidence 2234567888888888877643 234455555542 233444 4445554 57888887765432
Q ss_pred cccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChhhhhcccc--c-C
Q 012545 228 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVA--E-N 302 (461)
Q Consensus 228 ~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~~~~~~~~--~-~ 302 (461)
....+...+.+++.++++||++++++.|++++. ++ ..+...+| +++++|.+++++|.+|+..+...+.. . .
T Consensus 196 ~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~~--~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~ 271 (430)
T 3hyw_A 196 VGGIGASKRLVEDLFAERNIDWIANVAVKAIEP--DK--VIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPA 271 (430)
T ss_dssp TTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS--SE--EEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTT
T ss_pred chhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC--Cc--eEEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCC
Confidence 124567788899999999999999999999964 32 23444444 57999999999999998766555433 3 4
Q ss_pred CCcEEeCCCCC-CCCCCEEEeCcccccCccccCc--ceeeccHHHHHHHHHHHHHHHhcccCCCc
Q 012545 303 KGGIETDDFFK-TSADDVYAVGDVATFPMKLYRE--MRRVEHVDHARKSAEQAVKTIMATEGGKT 364 (461)
Q Consensus 303 ~g~i~vd~~~~-t~~~~vya~GD~~~~~~~~~~~--~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 364 (461)
+|.|.||++|| |++|||||+|||+..+...... ...++....|.+||+++|+||++...|++
T Consensus 272 ~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~ 336 (430)
T 3hyw_A 272 NKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNP 336 (430)
T ss_dssp TCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56799999999 7999999999999876431111 01236788999999999999998876643
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=303.43 Aligned_cols=318 Identities=16% Similarity=0.171 Sum_probs=231.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHH---cCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCH
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLP 79 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~---~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (461)
+.++||||||||+||++||..|++ .|++ |+|||+++.+.|. +.+. .+... .... ......+.
T Consensus 2 ~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~---Vtlie~~~~~~~~-~~~~-~~~~g--~~~~--------~~~~~~l~ 66 (437)
T 3sx6_A 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHE---VTLISANDYFQFV-PSNP-WVGVG--WKER--------DDIAFPIR 66 (437)
T ss_dssp TTSCEEEEECCSTTHHHHHHHHHHHHGGGSE---EEEECSSSEEECG-GGHH-HHHHT--SSCH--------HHHEEECH
T ss_pred CCCCcEEEECCcHHHHHHHHHHhccCCCcCE---EEEEeCCCCCccc-CCcc-ccccC--ccCH--------HHHHHHHH
Confidence 346899999999999999999999 6665 9999999865543 2111 00000 0000 00123467
Q ss_pred hHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 80 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 80 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
+++++.+++++.+ +++.++.+.+.|.+.+++++.||+||+|||+++..|.+||+.+
T Consensus 67 ~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~----------------------- 122 (437)
T 3sx6_A 67 HYVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDP----------------------- 122 (437)
T ss_dssp HHHHTTTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCST-----------------------
T ss_pred HHHHHCCCEEEEe-EEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCc-----------------------
Confidence 7888899999875 9999999999999999988999999999999997666666431
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhc-CCCcEEEECCCHH----H--HHHH----HHHHHCCCc-----EEEEccCC
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAK-KNGKAVVVGGGYI----G--LELS----AALKINNID-----VSMVYPEP 223 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~-~~~~v~VvG~G~~----g--~e~a----~~l~~~g~~-----Vtli~~~~ 223 (461)
...+.+.+.+..++..+.+.++.. ..++++|||+|.. | +|+| ..+.+.|.+ |+++++.+
T Consensus 123 -----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~ 197 (437)
T 3sx6_A 123 -----HEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEP 197 (437)
T ss_dssp -----TTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSS
T ss_pred -----ccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCc
Confidence 013456667888888877766532 2345678888554 3 7777 666677865 99999988
Q ss_pred ccCCccc--CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-----CcEEecCEEEEccCCCCChhhhh
Q 012545 224 WCMPRLF--TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-----GRTLEADIVVVGVGGRPLISLFK 296 (461)
Q Consensus 224 ~~~~~~~--~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-----G~~i~aD~vi~a~G~~p~~~~~~ 296 (461)
.+....+ .++..+.+.+.+++.||+++++++|++++. ++........+ ++++++|.+++++|++|+..+.+
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~ 275 (437)
T 3sx6_A 198 YIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAG 275 (437)
T ss_dssp STTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHT
T ss_pred cccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhc
Confidence 7632111 135788899999999999999999999975 33211111233 56799999999999999877665
Q ss_pred -cccccCCCcEEeCCCCCC-CCCCEEEeCcccccCccccCcc---eeeccHHHHHHHHHHHHHHHhcccCCCcccC
Q 012545 297 -GQVAENKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREM---RRVEHVDHARKSAEQAVKTIMATEGGKTVTG 367 (461)
Q Consensus 297 -~~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~---~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 367 (461)
.++..++|+|.||+++|| ++|||||+|||+..+... +.. ...++...|..||+.||+||...+.|++...
T Consensus 276 ~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~~ 350 (437)
T 3sx6_A 276 VEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQ 350 (437)
T ss_dssp STTTBCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred cccccCCCCcEEeChhccCCCCCCEEEEEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 355457899999999999 999999999999876421 111 0136788999999999999998887765444
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=299.77 Aligned_cols=291 Identities=21% Similarity=0.263 Sum_probs=227.1
Q ss_pred CeEEEEcCChHHHHHHHHHHH---cCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~---~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
+||||||||+||+++|..|++ .|++ |+|||+++.+.|. +.+..... ..... .+....+.+++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~---V~vie~~~~~~~~-~~~~~~~~---~~~~~--------~~~~~~~~~~~ 66 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKAD---VKVINKSRFSYFR-PALPHVAI---GVRDV--------DELKVDLSEAL 66 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSE---EEEEESSSEEEEC-CSSCCCCS---SCCCC--------CCEEEEHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEeCCCCceec-cchhhccc---CCcCH--------HHHHHHHHHHH
Confidence 489999999999999999999 6765 9999999864332 22211000 00011 11123456667
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEcCCCc----EEecCEEEEccCCCccccccccccccCccccccccCCcccccccccC
Q 012545 83 KEKGIELILSTEIVRADIASKTLLSATGL----IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTD 158 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~----~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (461)
++.+++++.+ +|+.++.+.+.|.+.+++ ++.||+||+|||++|.+|.+||+.+
T Consensus 67 ~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~---------------------- 123 (409)
T 3h8l_A 67 PEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDK---------------------- 123 (409)
T ss_dssp GGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHH----------------------
T ss_pred hhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhh----------------------
Confidence 7889999998 999999998888887765 3899999999999997776666531
Q ss_pred CCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCH-------------------------HHHHHHH----HH
Q 012545 159 FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGY-------------------------IGLELSA----AL 209 (461)
Q Consensus 159 ~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~-------------------------~g~e~a~----~l 209 (461)
..++..+.+++.++++.+.... ++++|||+|+ .++|+|. .+
T Consensus 124 ---------~~~~~~~~~~~~~~~~~l~~~~-~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l 193 (409)
T 3h8l_A 124 ---------YGYSVCEPEFATKLREKLESFQ-GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYF 193 (409)
T ss_dssp ---------HCEESSSTTHHHHHHHHHHHCC-SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHH
T ss_pred ---------cCcCcCCHHHHHHHHHHHHHhc-CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHH
Confidence 2345556777888888777643 5667899992 4677764 55
Q ss_pred HHCCC----cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEc
Q 012545 210 KINNI----DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 285 (461)
Q Consensus 210 ~~~g~----~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a 285 (461)
.+.|. +|+++++.+ +++. +++++.+.+.+.+++.||+++++++|++++. + .+++++|+++++|.||++
T Consensus 194 ~~~g~~~~~~v~~~~~~~-~l~~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~g~~~~~D~vi~a 265 (409)
T 3h8l_A 194 KKKGMLDKVHVTVFSPGE-YLSD-LSPNSRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEKGNTIPADITILL 265 (409)
T ss_dssp HTTTCTTTEEEEEECSSS-SSTT-BCHHHHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETTSCEEECSEEEEE
T ss_pred HHcCCCCCeEEEEEeCCc-cccc-cCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECCCCEEeeeEEEEC
Confidence 66774 899999988 6665 7899999999999999999999999999965 2 378899999999999999
Q ss_pred cCCCCChhhhhc--ccccCCCcEEeCCCCCC-CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 286 VGGRPLISLFKG--QVAENKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 286 ~G~~p~~~~~~~--~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+|++|+..+.+. ++..++|+|.||+++|| +.|||||+|||+..+.+ +.+..|..||++||+||.+..
T Consensus 266 ~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~--------~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 266 PPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVP--------KLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp CCEECCHHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCS--------CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHhccccCcCCCCCEEeCcccccCCCCCEEEeehhccCCCC--------cHHHHHHHHHHHHHHHHHHHh
Confidence 999999655555 44446789999999999 99999999999986443 678899999999999998876
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=294.45 Aligned_cols=286 Identities=14% Similarity=0.116 Sum_probs=197.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCC---CCCCCH
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSG---GERLLP 79 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 79 (461)
|+.|||+||||||||++||..|+++|++ |+|+|++.... .+. ..++++....+.. ......
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~---v~lie~~~~gg--------~~~-----~~~~~~~~~~~~~~~~~~~~~~ 67 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQ---IALFDNNTNRN--------RVT-----QNSHGFITRDGIKPEEFKEIGL 67 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCGG--------GGS-----SCBCCSTTCTTBCHHHHHHHHH
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCC--------eee-----eecCCccCCCCCCHHHHHHHHH
Confidence 5689999999999999999999999987 99999985311 110 0111111000000 000111
Q ss_pred hHHHHc-CcEEEcCCeEEEEeC-C--CCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCccccccc
Q 012545 80 EWYKEK-GIELILSTEIVRADI-A--SKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLR 155 (461)
Q Consensus 80 ~~~~~~-~v~~~~~~~v~~i~~-~--~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~ 155 (461)
+.+.++ ++.++.. .+..+.. + .+.+.+.+++++.||+||||||++|..|++||..++
T Consensus 68 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~------------------ 128 (304)
T 4fk1_A 68 NEVMKYPSVHYYEK-TVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREY------------------ 128 (304)
T ss_dssp HHHTTSTTEEEEEC-CEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHH------------------
T ss_pred HHHHhcCCEEEEee-EEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCcccc------------------
Confidence 222233 4555555 4544432 2 246788889999999999999999988887776420
Q ss_pred ccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEccCCccCCcccCHHH
Q 012545 156 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGY-IGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 234 (461)
Q Consensus 156 ~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~-~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~ 234 (461)
...++++....+.. ..++++++|||+|. .+.|+|..+.+.+.+|+++.+.+.+.
T Consensus 129 ---------~~~~v~~~~~~~~~--------~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~-------- 183 (304)
T 4fk1_A 129 ---------YGKSLFSCPYCDGW--------ELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELS-------- 183 (304)
T ss_dssp ---------BTTTEESCHHHHSG--------GGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC--------
T ss_pred ---------ccceeeeccccchh--------HhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccch--------
Confidence 01223322211111 11467888888875 56899999999999999998866532
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh-hccccc-CCCcEEeCCCC
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF-KGQVAE-NKGGIETDDFF 312 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~-~~~~~~-~~g~i~vd~~~ 312 (461)
+.+.+.|++.|++++.+ .++.+.. +++.+..+++++|+++++|.++++.|.+|+..++ +.+++. ++|+|.||+++
T Consensus 184 -~~~~~~l~~~g~~~~~~-~v~~~~~-~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~ 260 (304)
T 4fk1_A 184 -QTIMDELSNKNIPVITE-SIRTLQG-EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFG 260 (304)
T ss_dssp -HHHHHHHHTTTCCEECS-CEEEEES-GGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTC
T ss_pred -hhhhhhhhccceeEeee-eEEEeec-CCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCC
Confidence 23456788899999876 4777765 4566778999999999999888887766655544 556776 67889999999
Q ss_pred CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 313 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 313 ~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
|||+|+|||+|||++.+. .++..|..+|+.||.+|...+
T Consensus 261 ~Ts~p~IyA~GDv~~~~~---------~~~~~A~~~G~~AA~~i~~~L 299 (304)
T 4fk1_A 261 RTSEKNIYLAGETTTQGP---------SSLIIAASQGNKAAIAINSDI 299 (304)
T ss_dssp BCSSTTEEECSHHHHTSC---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeccCCCcc---------hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997543 467889999999999986543
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=294.83 Aligned_cols=306 Identities=19% Similarity=0.182 Sum_probs=213.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeec-CCCCCCCCHhH
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEW 81 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (461)
++.+||+|||||++|+++|..|++.|++ |+|+|+...... .....+........++.+.... .......+.+.
T Consensus 6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~---v~lie~~~~~~~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (333)
T 1vdc_A 6 THNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMANDI---APGGQLTTTTDVENFPGFPEGILGVELTDKFRKQ 79 (333)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTB---CTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCcccc---CCCceeeeccccccCCCCccCCCHHHHHHHHHHH
Confidence 4468999999999999999999999987 999998210000 0011111111111222221100 00111223455
Q ss_pred HHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
+++.+++++.++ +..++.+.+ .+.+ ++.++.||++|+|||+++..|.+||..... .
T Consensus 80 ~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~------------------~-- 137 (333)
T 1vdc_A 80 SERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVL------------------G-- 137 (333)
T ss_dssp HHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCBTCSSSS------------------S--
T ss_pred HHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCCCccccc------------------c--
Confidence 667899999985 888887665 5666 677899999999999999777777653200 0
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
......++....... .+....+++++|+|+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..
T Consensus 138 ---~~~~~~~~~~~~~~~------~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~ 202 (333)
T 1vdc_A 138 ---GFWNRGISACAVCDG------AAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQ 202 (333)
T ss_dssp ---CCBTTTEESCHHHHT------TSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HH
T ss_pred ---ccccCcEEEeccCcc------chhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HH
Confidence 000112222211111 11112578999999999999999999999999999999887643 2222 23
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCC-CEEEEEeC---CC--cEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCC-
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF- 311 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~---~G--~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~- 311 (461)
+.+++.||+++++++++++..++++ .+..+++. +| +++++|.||+|+|++|+.++++.++.. ++|+|.||++
T Consensus 203 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~ 282 (333)
T 1vdc_A 203 RALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGT 282 (333)
T ss_dssp HHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTS
T ss_pred HHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhh
Confidence 4457789999999999999873221 55556664 45 579999999999999999988766665 4789999987
Q ss_pred CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 312 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 312 ~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++|+.|+|||+|||+..+. ..+..|..+|+.||.+|...+
T Consensus 283 ~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~l 322 (333)
T 1vdc_A 283 TQTSVPGVFAAGDVQDKKY---------RQAITAAGTGCMAALDAEHYL 322 (333)
T ss_dssp CBCSSTTEEECGGGGCSSC---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEeeeccCCCc---------hhHHHHHHhHHHHHHHHHHHH
Confidence 6899999999999998752 468889999999999998655
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=290.04 Aligned_cols=282 Identities=16% Similarity=0.125 Sum_probs=207.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
++||+|||||+||+++|..|++.|++ |+|+|+++.... +.. ....++.............+.+.+.+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKN---ILLVDAGERRNR--------FAS--HSHGFLGQDGKAPGEIIAEARRQIER 68 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECCCCGGG--------GCS--CCCSSTTCTTCCHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCcccc--------cch--hhcCCcCCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999999986 999999753110 000 00111111000000001122334444
Q ss_pred c-CcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCC
Q 012545 85 K-GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV 161 (461)
Q Consensus 85 ~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (461)
. +++++.+ +|+.++.+.. .+.+.+++++.||++|+|||+.|.+|.+||+..+
T Consensus 69 ~~~v~~~~~-~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~------------------------ 123 (297)
T 3fbs_A 69 YPTIHWVEG-RVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRER------------------------ 123 (297)
T ss_dssp CTTEEEEES-CEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGG------------------------
T ss_pred cCCeEEEEe-EEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhh------------------------
Confidence 4 7888775 8999987654 5777888889999999999999988887776420
Q ss_pred CCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHH
Q 012545 162 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 241 (461)
Q Consensus 162 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~ 241 (461)
. ...+++.. ..+.. ...+++++|+|+|++|+|+|..|.+.| +|+++.+.+.. +++ .+.+.
T Consensus 124 ~---~~~~~~~~-~~~~~-------~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~~----~~~~~ 183 (297)
T 3fbs_A 124 W---GSAVFHCP-YCHGY-------ELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PDA----DQHAL 183 (297)
T ss_dssp B---TTTEESCH-HHHTG-------GGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CCH----HHHHH
T ss_pred c---CCeeEEcc-cCcch-------hhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CCH----HHHHH
Confidence 0 12233221 11111 115789999999999999999999999 99999987752 333 45678
Q ss_pred HHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccC---CC-cEEeCCCCCCCC
Q 012545 242 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAEN---KG-GIETDDFFKTSA 316 (461)
Q Consensus 242 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~---~g-~i~vd~~~~t~~ 316 (461)
+++.||+++. ++++++.. ++ .+++.+|+++++|.||+|+|++|+.++++. ++..+ +| ++.||++++|+.
T Consensus 184 l~~~gv~i~~-~~v~~i~~--~~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~ 257 (297)
T 3fbs_A 184 LAARGVRVET-TRIREIAG--HA---DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTA 257 (297)
T ss_dssp HHHTTCEEEC-SCEEEEET--TE---EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSS
T ss_pred HHHCCcEEEc-ceeeeeec--CC---eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCC
Confidence 8889999995 89999975 33 688999999999999999999999887753 45443 45 899999999999
Q ss_pred CCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 317 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 317 ~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
|+|||+|||+..+ +.+..|..||+.||.+|....
T Consensus 258 ~~vya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~l 291 (297)
T 3fbs_A 258 RGIFACGDVARPA----------GSVALAVGDGAMAGAAAHRSI 291 (297)
T ss_dssp TTEEECSGGGCTT----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeecCCch----------HHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999864 578899999999999998654
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=292.17 Aligned_cols=295 Identities=16% Similarity=0.182 Sum_probs=212.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecC-CCCCCCCHhH
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPEW 81 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (461)
++.+||+|||||++|+++|..|++.|++ |+|+|+..... .+........++.+..... ......+.++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLA---PLVFEGTSFGG--------ALMTTTDVENYPGFRNGITGPELMDEMREQ 80 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCC---CEEECCSSCSC--------GGGSCSCBCCSTTCTTCBCHHHHHHHHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCC--------ceeccchhhhcCCCCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999987 99999763211 1111111122222211000 0111223455
Q ss_pred HHHcCcEEEcCCeEEEEeCCC-CEE-EcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 82 YKEKGIELILSTEIVRADIAS-KTL-LSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~-~~v-~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
+.+.+++++.++ +..++... ..+ .+.+++++.||+||+|||+.|..|++||...+
T Consensus 81 ~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~---------------------- 137 (335)
T 2a87_A 81 ALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQEL---------------------- 137 (335)
T ss_dssp HHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHT----------------------
T ss_pred HHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhc----------------------
Confidence 667899999985 88888732 356 67778889999999999999987777775320
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
....++.+....+. + ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ...+ ..
T Consensus 138 -----~~~~~~~~~~~~~~------~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~ 198 (335)
T 2a87_A 138 -----LGRGVSSCATCDGF------F--FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LD 198 (335)
T ss_dssp -----BTTTEESCHHHHGG------G--GTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HH
T ss_pred -----cCCceEEeeccchh------h--cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HH
Confidence 01223322222211 1 1578999999999999999999999999999999887643 2222 22
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CC--cEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCC-C
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF-F 312 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G--~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~-~ 312 (461)
+.+++.||+++++++++++.. ++.+..+.+. +| +++++|.||+|+|++|+.++++.++.. ++|+|.||++ +
T Consensus 199 ~~~~~~gV~v~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~ 276 (335)
T 2a87_A 199 RARNNDKIRFLTNHTVVAVDG--DTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTT 276 (335)
T ss_dssp HHHHCTTEEEECSEEEEEEEC--SSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSS
T ss_pred HHhccCCcEEEeCceeEEEec--CCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccCCCccEEeCCCCC
Confidence 445778999999999999986 3333345443 45 579999999999999999988756665 5789999986 6
Q ss_pred CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccC
Q 012545 313 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 361 (461)
Q Consensus 313 ~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 361 (461)
+|+.|+|||+|||+..+. ..+..|..+|+.||.+|...+.
T Consensus 277 ~t~~~~iya~GD~~~~~~---------~~~~~A~~~g~~aA~~i~~~l~ 316 (335)
T 2a87_A 277 STSLPGVFAAGDLVDRTY---------RQAVTAAGSGCAAAIDAERWLA 316 (335)
T ss_dssp BCSSTTEEECGGGTCCSC---------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeeecCCccH---------HHHHHHHHhHHHHHHHHHHHhh
Confidence 899999999999998642 4678899999999999986553
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=303.71 Aligned_cols=293 Identities=19% Similarity=0.241 Sum_probs=216.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+|||||+||++||..|++.|++ |+|+|+..... +........++.+...........+...++
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~---v~lie~~~GG~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIR---TGLMGERFGGQ---------VLDTVDIENYISVPKTEGQKLAGALKAHVS 278 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSTTGG---------GTTCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCe---EEEEECCCCCc---------ccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999987 99998742111 110000111111110000011123345566
Q ss_pred HcCcEEEcCCeEEEEeCC-----CCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccC
Q 012545 84 EKGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTD 158 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (461)
+++++++.+++|..++.+ ...|.+.+|+++.||++|+|||+++..|.+||..++
T Consensus 279 ~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~--------------------- 337 (521)
T 1hyu_A 279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQY--------------------- 337 (521)
T ss_dssp TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTT---------------------
T ss_pred HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhh---------------------
Confidence 789999999999999864 345777888889999999999999977777775421
Q ss_pred CCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHH
Q 012545 159 FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 238 (461)
Q Consensus 159 ~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~ 238 (461)
....++++...... ...+++|+|||+|++|+|+|..|++.+.+|+++++.+.+.. + +.+
T Consensus 338 ------~~~~v~~~~~~~~~--------~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l 396 (521)
T 1hyu_A 338 ------RTKGVTYCPHCDGP--------LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVL 396 (521)
T ss_dssp ------TTTTEECCTTCCGG--------GGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHH
T ss_pred ------cCceEEEeecCchh--------hcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHH
Confidence 11223332221110 11578999999999999999999999999999999887753 3 345
Q ss_pred HHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC---Cc--EEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCC
Q 012545 239 EGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF 311 (461)
Q Consensus 239 ~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~--~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~ 311 (461)
.+.|++ .||++++++.++++.. +++++..+.+.+ |+ ++++|.|++++|++||++++...+.. .+|+|.||++
T Consensus 397 ~~~l~~~~gV~v~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~ 475 (521)
T 1hyu_A 397 QDKVRSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAK 475 (521)
T ss_dssp HHHHTTCTTEEEECSEEEEEEEE-CSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTT
T ss_pred HHHHhcCCCcEEEeCCEEEEEEc-CCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCC
Confidence 566776 6999999999999987 345665666653 53 68999999999999999888765555 5789999999
Q ss_pred CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 312 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 312 ~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+||+.|+|||+|||+..+. +.+..|..+|+.||.+|...+
T Consensus 476 ~~ts~p~VfA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 476 CETSVKGVFAAGDCTTVPY---------KQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp CBCSSTTEEECSTTBCCSS---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEeecccCCCc---------ceeeehHHhHHHHHHHHHHHH
Confidence 9999999999999998753 578899999999999998654
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=287.87 Aligned_cols=302 Identities=17% Similarity=0.236 Sum_probs=203.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCcccccccCCCCCCCCCCceeecCC-------CCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPEGTARLPGFHVCVGS-------GGE 75 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 75 (461)
++||+|||||++|+++|..|+++|++ |+|+|+++... |........+..+.....++.+...... ...
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~---v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLS---YVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL 79 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCC---EEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence 68999999999999999999999987 99999986532 1100000001111111112221111000 001
Q ss_pred CCCHhHHHHcCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccC--CCccccccccccccCccccccccCCcc
Q 012545 76 RLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATG--STVSITSLTSIRSKHCLCCFFLRTLPL 150 (461)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG--~~~~~~~~~g~~~~~~~~~~~~~~~p~ 150 (461)
..+.+.+++.+++++.+++|+.++.+.+. |.+.++ ++.||+||+||| +.|.+|++||+.++.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~------------ 146 (357)
T 4a9w_A 80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFA------------ 146 (357)
T ss_dssp HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCC------------
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccC------------
Confidence 12334556789999999999999887765 666666 799999999999 567777777764311
Q ss_pred cccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC-CccCCcc
Q 012545 151 FQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRL 229 (461)
Q Consensus 151 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~~~~~ 229 (461)
...++.....+.. ..++++++|||+|++|+|+|..|.+.+ +|+++.+. +.+++..
T Consensus 147 ----------------~~~~~~~~~~~~~-------~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~ 202 (357)
T 4a9w_A 147 ----------------GIQLHSAHYSTPA-------PFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADD 202 (357)
T ss_dssp ----------------SEEEEGGGCCCSG-------GGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTT
T ss_pred ----------------CcEEEeccCCChh-------hcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchh
Confidence 0111111111111 114789999999999999999999998 69999887 5555543
Q ss_pred c-CHHHHHHHHHHHH----------------------------hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecC
Q 012545 230 F-TADIAAFYEGYYA----------------------------NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 280 (461)
Q Consensus 230 ~-~~~~~~~~~~~l~----------------------------~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD 280 (461)
+ +..+.+.+.+.+. +.|+ +..+..+++++. + .+.+++|+++++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~--~----~v~~~~g~~i~~D 275 (357)
T 4a9w_A 203 VDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSP--T----GMQWADGTERAFD 275 (357)
T ss_dssp CCTHHHHTC----------------------CBCCCHHHHHHHHTTC-CCEECCCSEEET--T----EEECTTSCEEECS
T ss_pred hcCccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEeC--C----eeEECCCCEecCC
Confidence 2 3444433333332 3444 555566777754 2 4889999999999
Q ss_pred EEEEccCCCCChhhhhc-ccccCCCcEEeCCC--CCCCCCCEEEeC--cccccCccccCcceeeccHHHHHHHHHHHHHH
Q 012545 281 IVVVGVGGRPLISLFKG-QVAENKGGIETDDF--FKTSADDVYAVG--DVATFPMKLYREMRRVEHVDHARKSAEQAVKT 355 (461)
Q Consensus 281 ~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~--~~t~~~~vya~G--D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 355 (461)
.||+|+|++|++++++. ++..++|+|.||++ ++|+.|+|||+| ||+.... +.+..|..||+.+|.+
T Consensus 276 ~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~---------~~~~~A~~~g~~~a~~ 346 (357)
T 4a9w_A 276 AVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMAS---------ATLIGVTRYAREAVRQ 346 (357)
T ss_dssp EEEECCCBCCCCGGGTTTTCBCTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTC---------SSTTTHHHHHHHHHHH
T ss_pred EEEECCCcCCCCcccCcccccCCCCCccccCCcccCCCCCCeEEeccccccccch---------hhhhhhHHHHHHHHHH
Confidence 99999999999888754 55557889999999 899999999999 6665322 4556689999999999
Q ss_pred HhcccCC
Q 012545 356 IMATEGG 362 (461)
Q Consensus 356 i~~~~~~ 362 (461)
|...+.+
T Consensus 347 i~~~l~g 353 (357)
T 4a9w_A 347 VTAYCAD 353 (357)
T ss_dssp HHHHTC-
T ss_pred HHHHHHh
Confidence 9987644
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-34 Score=279.01 Aligned_cols=303 Identities=14% Similarity=0.152 Sum_probs=206.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCC-CCCcEEEEeCCCCCC-CC-CCcccccccCCCCC---CCCCCceee--------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAP-YE-RPALSKAYLFPEGT---ARLPGFHVC-------- 69 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~-~~-~~~~~~~~~~~~~~---~~~~~~~~~-------- 69 (461)
+.+||+|||||++|+++|..|++.|+ + |+|||+++... |. .+.. ..++.+... ..+..+...
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~---v~lie~~~~Gg~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 78 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKDFGITD---VIILEKGTVGHSFKHWPKS-TRTITPSFTSNGFGMPDMNAISMDTSPAF 78 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSSTTHHHHTSCTT-CBCSSCCCCCGGGTCCCTTCSSTTCCHHH
T ss_pred ccCcEEEECcCHHHHHHHHHHHHcCCCc---EEEEecCCCCCccccCccc-ccccCcchhcccCCchhhhhccccccccc
Confidence 36899999999999999999999987 5 99999986100 00 0000 000000000 000000000
Q ss_pred -cCCC------CCCCCHhHHHHcCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCEEEEccCCCccccccccccccCcc
Q 012545 70 -VGSG------GERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCL 140 (461)
Q Consensus 70 -~~~~------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~ 140 (461)
.... ....+...+++.+++++.+++|+.++.+. ..|.+.++ ++.||+||+|||+.+. |.+|+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~ip~------- 149 (369)
T 3d1c_A 79 TFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PKKPF------- 149 (369)
T ss_dssp HHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BCCCS-------
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cCCCC-------
Confidence 0000 00112344566899999998999998764 35666666 5999999999999862 22222
Q ss_pred ccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 012545 141 CCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220 (461)
Q Consensus 141 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~ 220 (461)
..+++..++.+.. ..+.++|+|||+|.+|+|+|..|.+.|.+|++++
T Consensus 150 --------------------------~~~~~~~~~~~~~-------~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~ 196 (369)
T 3d1c_A 150 --------------------------KYGIHYSEIEDFD-------NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYT 196 (369)
T ss_dssp --------------------------SSCEEGGGCSCGG-------GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred --------------------------CceechhhcCChh-------hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEe
Confidence 1223322221111 1256799999999999999999999999999999
Q ss_pred cCCccCCc------ccCHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEe-cCEEEEccCCCCCh
Q 012545 221 PEPWCMPR------LFTADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVGVGGRPLI 292 (461)
Q Consensus 221 ~~~~~~~~------~~~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~-aD~vi~a~G~~p~~ 292 (461)
+.+.+++. .+++...+.+.+.+++.| |+++++++|++++.+++ ...+++.+|+++. +|.||+|+|++|+.
T Consensus 197 ~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~~d~vi~a~G~~~~~ 274 (369)
T 3d1c_A 197 STTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNG--QYHISFDSGQSVHTPHEPILATGFDATK 274 (369)
T ss_dssp C----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETT--EEEEEESSSCCEEESSCCEECCCBCGGG
T ss_pred cCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCC--ceEEEecCCeEeccCCceEEeeccCCcc
Confidence 99887642 146778889999999997 99999999999975222 2467888998775 59999999999999
Q ss_pred hhhhc-ccccCCCcEEeCCC-CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 293 SLFKG-QVAENKGGIETDDF-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 293 ~~~~~-~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+++.. .+..++|++.||++ ++|+.|+|||+|||+..+.... ..+..|..||+.+|++|.+..
T Consensus 275 ~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~------~~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 275 NPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKL------CYIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp SHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCC------CSHHHHGGGHHHHHHHHHHHT
T ss_pred chhhhhhccCCCCCEEechhhcccCCCCeEEeccccccCCeeE------EEEehhhHHHHHHHHHHhccc
Confidence 65543 44446788999976 6789999999999998765422 345677889999999998765
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=280.56 Aligned_cols=288 Identities=20% Similarity=0.233 Sum_probs=202.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+|||||+||++||..|++.|++ |+|||+.+.... .+.+ .+|.+.. .........++++
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~---V~v~e~~~~~GG-------~l~~-----gip~~~~--~~~~~~~~~~~l~ 183 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYE---VHVYDRYDRMGG-------LLVY-----GIPGFKL--EKSVVERRVKLLA 183 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSSCST-------HHHH-----TSCTTTS--CHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCC-------eeee-----cCCCccC--CHHHHHHHHHHHH
Confidence 358999999999999999999999987 999999864321 1111 0111110 0000123456678
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.|++++.++.+. +.+.+++.. +.||+||+|||+.+. +.++ ++|
T Consensus 184 ~~gv~~~~~~~v~------~~v~~~~~~-~~~d~vvlAtG~~~~--------------------------~~~~---ipG 227 (456)
T 2vdc_G 184 DAGVIYHPNFEVG------RDASLPELR-RKHVAVLVATGVYKA--------------------------RDIK---APG 227 (456)
T ss_dssp HTTCEEETTCCBT------TTBCHHHHH-SSCSEEEECCCCCEE--------------------------CCTT---CSC
T ss_pred HCCcEEEeCCEec------cEEEhhHhH-hhCCEEEEecCCCCC--------------------------CCCC---CCC
Confidence 8999999986542 233333333 679999999999630 2222 566
Q ss_pred CCCCCEEEeCCHHHHHHHH---HH-------HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc-CCcccC
Q 012545 164 ADAKNIFYLREIDDADKLV---EA-------IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFT 231 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~---~~-------l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~ 231 (461)
.+.+++++..++....... +. .....+++|+|||+|++|+|+|..+.+.|. +|++++|.+.. ++. .+
T Consensus 228 ~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~ 306 (456)
T 2vdc_G 228 SGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQ 306 (456)
T ss_dssp CTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CH
T ss_pred CcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CH
Confidence 6667777644332221111 00 011357899999999999999999999998 49999998875 554 33
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---------C---------CC--cEEecCEEEEccCCCCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---------K---------DG--RTLEADIVVVGVGGRPL 291 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---------~---------~G--~~i~aD~vi~a~G~~p~ 291 (461)
.+ .+.+++.||++++++.++++.. ++++..+++ . +| .++++|.||+|+|++|+
T Consensus 307 ~e-----~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~ 379 (456)
T 2vdc_G 307 RE-----VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPE 379 (456)
T ss_dssp HH-----HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECC
T ss_pred HH-----HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCC
Confidence 32 2457788999999999998875 343322222 1 23 47999999999999998
Q ss_pred hh--hhh-ccccc-CCCcEEeCCC-CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 292 IS--LFK-GQVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 292 ~~--~~~-~~~~~-~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
.. ++. .++.. .+|+|.||++ +||+.|+|||+|||+..+ .++..|..+|+.||.+|...+.+
T Consensus 380 ~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~----------~~v~~A~~~G~~aA~~i~~~L~~ 445 (456)
T 2vdc_G 380 DLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGA----------SLVVWAIRDGRDAAEGIHAYAKA 445 (456)
T ss_dssp CHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSC----------CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCc----------hHHHHHHHHHHHHHHHHHHHhhc
Confidence 75 454 45655 5789999997 999999999999999865 46889999999999999876543
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-32 Score=297.67 Aligned_cols=316 Identities=17% Similarity=0.202 Sum_probs=215.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+|||||+||++||..|++.|++ +|+|+|+++..... +.. .+|.+... ........+++++
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~--~Vtv~E~~~~~GG~-------~~~-----~ip~~~~~--~~~~~~~~~~~~~ 250 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYVGGL-------STS-----EIPQFRLP--YDVVNFEIELMKD 250 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSCSTH-------HHH-----TSCTTTSC--HHHHHHHHHHHHT
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCC--cEEEEeCCCCCCcc-------ccc-----cCCcccCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999982 29999998643211 100 11111100 0001122466778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCC-CccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.|++++.++.+. .+.+.+.+++++.||+||||||+ .|. .++. ++|
T Consensus 251 ~gv~~~~~~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~---------------------------~l~~--~~G 296 (1025)
T 1gte_A 251 LGVKIICGKSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPK---------------------------TDDI--FQG 296 (1025)
T ss_dssp TTCEEEESCCBS-----TTSBCHHHHHHTTCCEEEECCCCCEEC---------------------------CCGG--GTT
T ss_pred CCcEEEcccEec-----cceEEhhhcCccCCCEEEEecCCCCCC---------------------------CCCC--CCC
Confidence 899999986652 23455555555789999999999 472 2221 123
Q ss_pred CC-CCCEEEeCCHHHHHHHHHH-----HH---hcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCc-cCCcccCH
Q 012545 164 AD-AKNIFYLREIDDADKLVEA-----IK---AKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTA 232 (461)
Q Consensus 164 ~~-~~~v~~~~~~~~~~~l~~~-----l~---~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~-~~~~~~~~ 232 (461)
.+ ..++++..++......... +. ...+++|+|||+|++|+|+|..+.+.|. +||++++.+. .++. +++
T Consensus 297 ~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~ 375 (1025)
T 1gte_A 297 LTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPE 375 (1025)
T ss_dssp CCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHH
T ss_pred CCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHH
Confidence 22 3567764433221111000 00 1135699999999999999999999996 8999999884 4454 455
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC------CC---------cEEecCEEEEccCCCCC-hhhhh
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------DG---------RTLEADIVVVGVGGRPL-ISLFK 296 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------~G---------~~i~aD~vi~a~G~~p~-~~~~~ 296 (461)
++ +.+++.||++++++.++++.. +++++..+++. +| .++++|.||+|+|++|+ ..++.
T Consensus 376 e~-----~~~~~~Gv~~~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~ 449 (1025)
T 1gte_A 376 EV-----ELAKEEKCEFLPFLSPRKVIV-KGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKE 449 (1025)
T ss_dssp HH-----HHHHHTTCEEECSEEEEEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHH
T ss_pred HH-----HHHHHcCCEEEeCCCceEEEc-cCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhh
Confidence 44 466788999999999999986 35666556543 23 36899999999999864 55554
Q ss_pred c--cccc-CCCcEEeCC-CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccC---CCcccCCC
Q 012545 297 G--QVAE-NKGGIETDD-FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG---GKTVTGYD 369 (461)
Q Consensus 297 ~--~~~~-~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~~ 369 (461)
. ++.. .+|+|.||+ ++||+.|+|||+|||+..+ ..+..|..||+.||.+|.+.+. +.....+.
T Consensus 450 ~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~ 519 (1025)
T 1gte_A 450 ALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA----------NTTVESVNDGKQASWYIHKYIQAQYGASVSAKP 519 (1025)
T ss_dssp HTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC----------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSC
T ss_pred cccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHHhccCCCcccCc
Confidence 3 5666 478899997 8999999999999999865 4577899999999999986432 22223456
Q ss_pred CCCeEEE--ecCCcceEEcc
Q 012545 370 YLPYFYS--RAFDLSWQFYG 387 (461)
Q Consensus 370 ~~p~~~~--~~~~~~~~~~g 387 (461)
.+|++|+ ...+++....|
T Consensus 520 ~~p~~~~ev~~v~ls~~~~G 539 (1025)
T 1gte_A 520 ELPLFYTPVDLVDISVEMAG 539 (1025)
T ss_dssp CBCCCCCGGGGCCCCEEETT
T ss_pred Cccccccccccccceeeecc
Confidence 6788776 34455444444
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-32 Score=276.64 Aligned_cols=294 Identities=14% Similarity=0.158 Sum_probs=200.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+|||||+||++||..|++.| +..+|+|||+++.. |.. +.... .|.+.. .......+.++++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~~~V~vie~~~~~-gg~------~~~g~----~p~~~~--~~~~~~~~~~~~~ 70 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHH-SRAHVDIYEKQLVP-FGL------VRFGV----APDHPE--VKNVINTFTQTAR 70 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHC-SSCEEEEECSSSSS-CTH------HHHTS----CTTCGG--GGGHHHHHHHHHT
T ss_pred CCceEEEECcCHHHHHHHHHHHhcC-CCCCEEEEeCCCcC-Cce------eeccc----CCCCcc--HHHHHHHHHHHHH
Confidence 3589999999999999999999988 23459999999753 211 11000 011100 0000122345666
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCc-cccccccccccCccccccccCCcccccccccCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~-~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
+.+++++.++.+ .+.|.+.+. ++.||+||+|||+.+ ..|. +|
T Consensus 71 ~~gv~~~~~~~v------~~~V~~~~~-~~~~d~lVlAtGs~~~~~~~------------------------------ip 113 (460)
T 1cjc_A 71 SDRCAFYGNVEV------GRDVTVQEL-QDAYHAVVLSYGAEDHQALD------------------------------IP 113 (460)
T ss_dssp STTEEEEBSCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCC------------------------------CT
T ss_pred hCCcEEEeeeEE------eeEEEeccc-eEEcCEEEEecCcCCCCCCC------------------------------CC
Confidence 789999998654 234544443 378999999999986 3222 55
Q ss_pred CCCCCCEEEeCCHHHHHHHH---HHHH-hcCCCcEEEECCCHHHHHHHHHHH--------------------HCCC-cEE
Q 012545 163 GADAKNIFYLREIDDADKLV---EAIK-AKKNGKAVVVGGGYIGLELSAALK--------------------INNI-DVS 217 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~---~~l~-~~~~~~v~VvG~G~~g~e~a~~l~--------------------~~g~-~Vt 217 (461)
|.+.+++++.+++.....-. ..+. ...+++++|||+|++|+|+|..|. +.+. +|+
T Consensus 114 G~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~ 193 (460)
T 1cjc_A 114 GEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVW 193 (460)
T ss_dssp TTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEE
T ss_pred CCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEE
Confidence 65566777655442110000 0000 114789999999999999999998 5676 799
Q ss_pred EEccCCccC--------------Cc--------cc----------CH---HHHHHHHHHHHh--------------cCcE
Q 012545 218 MVYPEPWCM--------------PR--------LF----------TA---DIAAFYEGYYAN--------------KGIK 248 (461)
Q Consensus 218 li~~~~~~~--------------~~--------~~----------~~---~~~~~~~~~l~~--------------~GV~ 248 (461)
++.|.+.+. +. .+ +. .+.+.+.+.+++ .||+
T Consensus 194 lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~ 273 (460)
T 1cjc_A 194 IVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWG 273 (460)
T ss_dssp EECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEE
T ss_pred EEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEE
Confidence 999988652 21 00 11 023444455555 8999
Q ss_pred EEcCCcEEEEEecCCC-CEEEEEeC---------------CC--cEEecCEEEEccCCCCChhhhhccc-cc-CCCcEEe
Q 012545 249 IIKGTVAVGFTTNADG-EVKEVKLK---------------DG--RTLEADIVVVGVGGRPLISLFKGQV-AE-NKGGIET 308 (461)
Q Consensus 249 v~~~~~v~~i~~~~~g-~~~~v~~~---------------~G--~~i~aD~vi~a~G~~p~~~~~~~~~-~~-~~g~i~v 308 (461)
+++++.++++..++++ ++..|++. +| ++++||.||+|+|++|+. + .++ .. ++|+|.|
T Consensus 274 ~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d~~g~i~v 350 (460)
T 1cjc_A 274 LRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFDPKLGVVP 350 (460)
T ss_dssp EECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCBTTTTBCC
T ss_pred EECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccccCCCeeE
Confidence 9999999999874335 66556553 34 579999999999999998 3 455 55 5689999
Q ss_pred CCCCCCC-CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 309 DDFFKTS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 309 d~~~~t~-~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
|+++||+ .|+|||+|||+..+. ..+..|..+|+.+|.+|++..
T Consensus 351 n~~~rt~~~p~vya~Gd~~~g~~---------~~i~~a~~~g~~aa~~i~~~l 394 (460)
T 1cjc_A 351 NMEGRVVDVPGLYCSGWVKRGPT---------GVITTTMTDSFLTGQILLQDL 394 (460)
T ss_dssp EETTEETTCTTEEECTHHHHCTT---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcCCCCEEEEEeCCcCCC---------ccHHHHHHHHHHHHHHHHHHH
Confidence 9999998 799999999997653 346789999999999998765
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-32 Score=294.93 Aligned_cols=284 Identities=16% Similarity=0.221 Sum_probs=205.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||||||||+||++||..|++.|++ |+|||+++... ..++.. ....+++... ........+.+.+
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~---V~lie~~~~~G-------G~~~~~-~k~~i~~~~~---~~~~~~~~~~l~~ 193 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGAR---VMLLDERAEAG-------GTLLDT-AGEQIDGMDS---SAWIEQVTSELAE 193 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSS-------GGGGGS-SCCEETTEEH---HHHHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCC-------ceeccC-CccccCCCCH---HHHHHHHHHHHhh
Confidence 57999999999999999999999987 99999986532 111100 0000111000 0000111223344
Q ss_pred -cCcEEEcCCeEEEEeCCCCEEE---------c--------CCCcEEecCEEEEccCCCccccccccccccCcccccccc
Q 012545 85 -KGIELILSTEIVRADIASKTLL---------S--------ATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLR 146 (461)
Q Consensus 85 -~~v~~~~~~~v~~i~~~~~~v~---------~--------~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~ 146 (461)
.+++++.+++|..++....... + .++.++.||+||||||+.|..
T Consensus 194 ~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~------------------ 255 (965)
T 2gag_A 194 AEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP------------------ 255 (965)
T ss_dssp STTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC------------------
T ss_pred cCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC------------------
Confidence 4899999989998876543211 1 112368999999999999833
Q ss_pred CCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC
Q 012545 147 TLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 226 (461)
Q Consensus 147 ~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 226 (461)
++ +||.+.+++++..++.+ +.+.....++++++|||+|++|+|+|..|.+.|.+|+++++.+.++
T Consensus 256 ---------~~---ipG~~~~gv~~~~~~~~---~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~ 320 (965)
T 2gag_A 256 ---------IV---FENNDRPGIMLAGAVRS---YLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS 320 (965)
T ss_dssp ---------CC---CBTCCSTTEEEHHHHHH---HHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC
T ss_pred ---------CC---CCCCCCCCEEEhHHHHH---HHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc
Confidence 33 56666677887654432 2222222356899999999999999999999999999999988764
Q ss_pred CcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-------C--cEEecCEEEEccCCCCChhhhhc
Q 012545 227 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-------G--RTLEADIVVVGVGGRPLISLFKG 297 (461)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-------G--~~i~aD~vi~a~G~~p~~~~~~~ 297 (461)
+ . .+.+++.||++++++.++++..++++++..|++.+ | +++++|.|++++|++|+++++..
T Consensus 321 ~-----~-----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~ 390 (965)
T 2gag_A 321 A-----A-----AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQ 390 (965)
T ss_dssp H-----H-----HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHH
T ss_pred h-----h-----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHh
Confidence 2 1 46788999999999999999863245555676654 5 67999999999999999987753
Q ss_pred ccccCCCcEEeCCCCC-----CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 298 QVAENKGGIETDDFFK-----TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 298 ~~~~~~g~i~vd~~~~-----t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.+++|.||++++ |+.|+|||+|||++.+. ...|..||+.||.+|.+..
T Consensus 391 ----~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~~l 443 (965)
T 2gag_A 391 ----RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRLD-----------TASALSTGAATGAAAATAA 443 (965)
T ss_dssp ----TTCCEEEETTTTEEEECSCCTTEEECGGGGTCCS-----------HHHHHHHHHHHHHHHHHHT
T ss_pred ----CCCcEEEcCcccccccCCCCCCEEEEEecCCchh-----------HHHHHHHHHHHHHHHHHHc
Confidence 257899999988 89999999999998742 3479999999999998754
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-31 Score=265.33 Aligned_cols=288 Identities=14% Similarity=0.153 Sum_probs=196.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHH---cCCCCCcEEEEeCCCCCC----CCC-C-cc-----cccccCCC-------CCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAP----YER-P-AL-----SKAYLFPE-------GTARL 63 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~---~g~~~~~V~vie~~~~~~----~~~-~-~~-----~~~~~~~~-------~~~~~ 63 (461)
.+||+|||||+||++||..|++ .|++..+|+|||+++... |.. + +. ....++.. ....+
T Consensus 2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~ 81 (464)
T 2xve_A 2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEF 81 (464)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCB
T ss_pred CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhccc
Confidence 3799999999999999999999 886534599999986432 110 0 00 00000000 00001
Q ss_pred CCceeecC-----C------CCCCCCHhHHHHcCcE--EEcCCeEEEEeCCCC----EEEcCC---C--cEEecCEEEEc
Q 012545 64 PGFHVCVG-----S------GGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSAT---G--LIFKYQILVIA 121 (461)
Q Consensus 64 ~~~~~~~~-----~------~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~---~--~~~~~d~liiA 121 (461)
+++..... . .....+.+.+++.+++ +.++++|..++.... .|.+.+ + .++.||+||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvA 161 (464)
T 2xve_A 82 ADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCC 161 (464)
T ss_dssp TTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred CCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEEC
Confidence 11110000 0 0001123344556887 888989999986554 566543 3 56899999999
Q ss_pred cC--CCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCC
Q 012545 122 TG--STVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG 199 (461)
Q Consensus 122 tG--~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G 199 (461)
|| +.|.+|++||+.. ++ ..+++..++.+... ..+++|+|||+|
T Consensus 162 tG~~s~p~~p~ipG~~~------------------------~~----g~~~hs~~~~~~~~-------~~~k~VvVVG~G 206 (464)
T 2xve_A 162 TGHFSTPYVPEFEGFEK------------------------FG----GRILHAHDFRDALE-------FKDKTVLLVGSS 206 (464)
T ss_dssp CCSSSSBCCCCCBTTTT------------------------CC----SEEEEGGGCCCGGG-------GTTSEEEEECCS
T ss_pred CCCCCCCccCCCCCccc------------------------CC----ceEEehhhhCCHhH-------cCCCEEEEEcCC
Confidence 99 8898887777642 11 11333322222111 158999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEec
Q 012545 200 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 279 (461)
Q Consensus 200 ~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~a 279 (461)
++|+|+|..|++.|.+|+++.+.+.+++..+ ..||+++ ..|++++. + .|+++||+++++
T Consensus 207 ~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~-------------~~~V~~~--~~V~~i~~--~----~V~~~dG~~i~~ 265 (464)
T 2xve_A 207 YSAEDIGSQCYKYGAKKLISCYRTAPMGYKW-------------PENWDER--PNLVRVDT--E----NAYFADGSSEKV 265 (464)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSSCCCCCCC-------------CTTEEEC--SCEEEECS--S----EEEETTSCEEEC
T ss_pred CCHHHHHHHHHHhCCeEEEEEECCCCCCCCC-------------CCceEEc--CCeEEEeC--C----EEEECCCCEEeC
Confidence 9999999999999999999999888766422 2478887 67888853 2 578899999999
Q ss_pred CEEEEccCCCCChhhhhc--ccccCCC-cEEeCCC---CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHH
Q 012545 280 DIVVVGVGGRPLISLFKG--QVAENKG-GIETDDF---FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAV 353 (461)
Q Consensus 280 D~vi~a~G~~p~~~~~~~--~~~~~~g-~i~vd~~---~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa 353 (461)
|.||+|+|++|+.+++.. ++..+++ ++ ++.+ ++|+.|+|||+|||+.. ..+..|..||+.+|
T Consensus 266 D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-----------~~~~~a~~qa~~~a 333 (464)
T 2xve_A 266 DAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDNPKFFYIGMQDQW-----------YSFNMFDAQAWYAR 333 (464)
T ss_dssp SEEEECCCBCCCCTTBCTTTCCCCCSSSCC-SSEETTTEESSSTTEEECSCSCCS-----------SCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCcCcccccccCCCccc-ccccceEecCCCCCEEEEeCcccc-----------cchHHHHHHHHHHH
Confidence 999999999999998864 3444444 54 4433 56899999999998864 34678889999999
Q ss_pred HHHhccc
Q 012545 354 KTIMATE 360 (461)
Q Consensus 354 ~~i~~~~ 360 (461)
+++.+..
T Consensus 334 ~~l~G~~ 340 (464)
T 2xve_A 334 DVIMGRL 340 (464)
T ss_dssp HHHTTSS
T ss_pred HHHcCCC
Confidence 9998754
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-32 Score=274.31 Aligned_cols=290 Identities=16% Similarity=0.197 Sum_probs=197.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-c------CCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAK-Q------GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGER 76 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~-~------g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (461)
..+||+|||||+||++||..|++ . +.+ |+|||+.+. +|..+ .+.. .|.... ..+...
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~---V~lie~~~~-~gg~~------~~gv----~p~~~~--~~~~~~ 65 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMA---VDMLEMLPT-PWGLV------RSGV----APDHPK--IKSISK 65 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE---EEEEESSSS-CSTHH------HHTS----CTTCTG--GGGGHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCe---EEEEecCCC-CCCcc------cccc----CCCCCC--HHHHHH
Confidence 46899999999999999999999 7 665 999999865 22211 0000 011000 001112
Q ss_pred CCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCccccccc
Q 012545 77 LLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLR 155 (461)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~ 155 (461)
.+.+++++.+++++.+..+ .+.|.+.+++ +.||+||+|||+. +..|.
T Consensus 66 ~~~~~~~~~~v~~~~~v~v------~~~v~~~~~~-~~~d~lViAtG~~~~~~~~------------------------- 113 (456)
T 1lqt_A 66 QFEKTAEDPRFRFFGNVVV------GEHVQPGELS-ERYDAVIYAVGAQSDRMLN------------------------- 113 (456)
T ss_dssp HHHHHHTSTTEEEEESCCB------TTTBCHHHHH-HHSSEEEECCCCCEECCCC-------------------------
T ss_pred HHHHHHhcCCCEEEeeEEE------CCEEEECCCe-EeCCEEEEeeCCCCCCCCC-------------------------
Confidence 3345566789999887542 2445555553 7999999999997 53222
Q ss_pred ccCCCCCCCCCCCEEEeCCHHHHHHH-H---HHHHhcCCCcEEEECCCHHHHHHHHHHHHC-------------------
Q 012545 156 LTDFGVEGADAKNIFYLREIDDADKL-V---EAIKAKKNGKAVVVGGGYIGLELSAALKIN------------------- 212 (461)
Q Consensus 156 ~~~~~~~g~~~~~v~~~~~~~~~~~l-~---~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~------------------- 212 (461)
+||.+.+++++..++.....- . ..+....+++++|||+|++|+|+|..|.+.
T Consensus 114 -----ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~ 188 (456)
T 1lqt_A 114 -----IPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP 188 (456)
T ss_dssp -----CTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred -----CCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHH
Confidence 555555667765443211000 0 011112478999999999999999999874
Q ss_pred -C-CcEEEEccCCccCCcccCH------------------H------------------HHHHHHHHHHh------cCcE
Q 012545 213 -N-IDVSMVYPEPWCMPRLFTA------------------D------------------IAAFYEGYYAN------KGIK 248 (461)
Q Consensus 213 -g-~~Vtli~~~~~~~~~~~~~------------------~------------------~~~~~~~~l~~------~GV~ 248 (461)
+ .+|+++.|.+.+...+..+ + +.+.+.+.+++ .||+
T Consensus 189 ~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~ 268 (456)
T 1lqt_A 189 RGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMV 268 (456)
T ss_dssp CCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEE
T ss_pred CCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEE
Confidence 5 4899999988765431111 1 12344455555 7999
Q ss_pred EEcCCcEEEEEecCCCCEEEEEeC----------------CC--cEEecCEEEEccCCCCChhhhhccccc-CCCcEEeC
Q 012545 249 IIKGTVAVGFTTNADGEVKEVKLK----------------DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD 309 (461)
Q Consensus 249 v~~~~~v~~i~~~~~g~~~~v~~~----------------~G--~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd 309 (461)
+++++.++++.. ++.+..|++. +| ++++||.||+|+|++|+. + .++.. ++|+|.||
T Consensus 269 i~~~~~~~~i~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~vn 343 (456)
T 1lqt_A 269 FRFLTSPIEIKG--KRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIPN 343 (456)
T ss_dssp EECSEEEEEEEC--SSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCCE
T ss_pred EEeCCCCeEEec--CCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeEC
Confidence 999999999986 3444345443 34 469999999999999998 3 34555 57889999
Q ss_pred CCCC-CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 310 DFFK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 310 ~~~~-t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+++| |+.|+|||+|||+..+. ..+..|..+|+.+|.+|++..
T Consensus 344 ~~~rvt~~pgvya~GD~~~gp~---------~~i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 344 VGGRINGSPNEYVVGWIKRGPT---------GVIGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp ETTEETTCSSEEECTHHHHCSC---------SCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCEEEEeccCCCCc---------hhHHHHHHHHHHHHHHHHHHH
Confidence 9999 79999999999997653 234568899999999998654
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-31 Score=265.86 Aligned_cols=312 Identities=15% Similarity=0.074 Sum_probs=193.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-----CCCCcEEEEeCCCCCCCCCCccc-ccccCCCCCCC-----CCCceeec---
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQG-----VKPGELAIISKEAVAPYERPALS-KAYLFPEGTAR-----LPGFHVCV--- 70 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g-----~~~~~V~vie~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~--- 70 (461)
.+||+|||||++|+++|..|++.| .+ |+|||+++...|....+. ...+......+ .|.....+
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~---v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~ 106 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALE---VLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNY 106 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCC---EEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCccc---EEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHh
Confidence 469999999999999999999998 66 999999987665432110 00000000000 00000000
Q ss_pred --CC----------CC-------CCCCHhHHHHcCcEEEcCCeEEEEeCC---CC----EEEcCCCc----EEecCEEEE
Q 012545 71 --GS----------GG-------ERLLPEWYKEKGIELILSTEIVRADIA---SK----TLLSATGL----IFKYQILVI 120 (461)
Q Consensus 71 --~~----------~~-------~~~~~~~~~~~~v~~~~~~~v~~i~~~---~~----~v~~~~~~----~~~~d~lii 120 (461)
.. .. ..++....++.++++.++++|+.++.+ .+ .|.+.++. ++.||+||+
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVl 186 (463)
T 3s5w_A 107 LHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVV 186 (463)
T ss_dssp HHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEE
T ss_pred hhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEE
Confidence 00 00 001112223457889999899999875 43 45555654 799999999
Q ss_pred ccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCC-CEEEeCCHHH-HHHHHHHHHhcCCCcEEEECC
Q 012545 121 ATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAK-NIFYLREIDD-ADKLVEAIKAKKNGKAVVVGG 198 (461)
Q Consensus 121 AtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~-~v~~~~~~~~-~~~l~~~l~~~~~~~v~VvG~ 198 (461)
|||+.|.+|.. +++.... .+++...+.+ ...+.... ..+++|+|||+
T Consensus 187 AtG~~p~~p~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvVvGg 235 (463)
T 3s5w_A 187 SPGGTPRIPQV-----------------------------FRALKGDGRVFHHSQYLEHMAKQPCSS--GKPMKIAIIGG 235 (463)
T ss_dssp CCCCEECCCGG-----------------------------GGGGTTCTTEEEGGGHHHHHCC---------CEEEEEECC
T ss_pred CCCCCCCCcch-----------------------------hhhcCCCCcEEECHHHHhhHHHhhhcc--cCCCeEEEECC
Confidence 99998854431 1111122 4555544332 22221111 14789999999
Q ss_pred CHHHHHHHHHHHHC--CCcEEEEccCCccCCcc-------------------cCHHHHHHHHHHHHh-------------
Q 012545 199 GYIGLELSAALKIN--NIDVSMVYPEPWCMPRL-------------------FTADIAAFYEGYYAN------------- 244 (461)
Q Consensus 199 G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~~-------------------~~~~~~~~~~~~l~~------------- 244 (461)
|.+|+|+|..|.+. +.+|+++.|.+.+++.. ++++....+.+.+..
T Consensus 236 G~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (463)
T 3s5w_A 236 GQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIER 315 (463)
T ss_dssp SHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHH
T ss_pred CHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHH
Confidence 99999999999998 89999999998775521 122222233232222
Q ss_pred -------------cCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCCCC--hhhhhcccccCCC
Q 012545 245 -------------KGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPL--ISLFKGQVAENKG 304 (461)
Q Consensus 245 -------------~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~--~~~~~~~~~~~~g 304 (461)
.||+++++++|+++..++++ ..+++. +|+ ++++|.||+|+|++|+ .+++....... |
T Consensus 316 ~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~-g 392 (463)
T 3s5w_A 316 IYGVFYRQKVSGIPRHAFRCMTTVERATATAQG--IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL-G 392 (463)
T ss_dssp HHHHHHHHHHHCCCCSEEETTEEEEEEEEETTE--EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB-C
T ss_pred HHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCE--EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh-C
Confidence 69999999999999873332 456665 675 4999999999999999 45543221112 8
Q ss_pred cEEeCCCCCCC-----CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 305 GIETDDFFKTS-----ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 305 ~i~vd~~~~t~-----~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
++.||+++|+. .|+|||+|||........ ......|.+++.+++..+-.
T Consensus 393 ~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~~-----~~l~~~a~r~~~i~~~~~~~ 446 (463)
T 3s5w_A 393 DHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSD-----TLLSVLPVRAEEISGSLYQH 446 (463)
T ss_dssp --CCCTTSBCCBCTTBCSEEEESSCCHHHHCTTT-----TSSTTHHHHHHHHHHHHHHH
T ss_pred CcccCcccccccCCCCCCeEEEcCCCcccCCcCc-----cchhHHHHHHHHHHHHHHhh
Confidence 99999999973 567999999986433210 02344566777766555443
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=261.22 Aligned_cols=293 Identities=12% Similarity=0.080 Sum_probs=192.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC-cccc--------------cccC--------C
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP-ALSK--------------AYLF--------P 57 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~-~~~~--------------~~~~--------~ 57 (461)
++.+||+|||||++|+++|..|++.|. ..+|+|+|+.+... |... .... .+.. .
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence 457999999999999999999999987 12399999985421 1110 0000 0000 0
Q ss_pred CCCC-----------CCCCceeecCCCC-------CCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCC---Cc---
Q 012545 58 EGTA-----------RLPGFHVCVGSGG-------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSAT---GL--- 111 (461)
Q Consensus 58 ~~~~-----------~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~---~~--- 111 (461)
.... .++++........ ..++.+..++.+..++++++|+.++.... .|.+.+ |+
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence 0000 0000000000000 00112233345667888999999986654 455544 55
Q ss_pred EEecCEEEEccCC--CccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcC
Q 012545 112 IFKYQILVIATGS--TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 189 (461)
Q Consensus 112 ~~~~d~liiAtG~--~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 189 (461)
++.||+||+|||. .|.+|++||+.++. +.....++++.++.+...+ .
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~------------------------~~~~g~v~~~~~~~~~~~~-------~ 211 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIPNIKGLDEYA------------------------KAVPGSVLHSSLFREPELF-------V 211 (447)
T ss_dssp EEEESEEEECCCSSSSBCBCCCBTHHHHH------------------------HHSTTSEEEGGGCCCGGGG-------T
T ss_pred EEEeCEEEECCCCCCCCCCCCCCChhhhh------------------------ccCCccEEEecccCChhhc-------C
Confidence 7999999999998 78888888864200 0001224444333222221 5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
+++|+|||+|++|+|+|..|++.+.+ |+++.+.+.+ +++.||.+ ...|+++.. ++. .
T Consensus 212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~--~~~--~ 269 (447)
T 2gv8_A 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDP--TTR--E 269 (447)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS----------------CBCSSEEE--ECCEEEEET--TTT--E
T ss_pred CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEec--CCC--E
Confidence 79999999999999999999999999 9999998765 34457764 567888864 222 6
Q ss_pred EEeCCCcE-EecCEEEEccCCCCChhh-----hhcc-ccc-CCCcEEeCCCCC---CCCCCEEEeCcccccCccccCcce
Q 012545 269 VKLKDGRT-LEADIVVVGVGGRPLISL-----FKGQ-VAE-NKGGIETDDFFK---TSADDVYAVGDVATFPMKLYREMR 337 (461)
Q Consensus 269 v~~~~G~~-i~aD~vi~a~G~~p~~~~-----~~~~-~~~-~~g~i~vd~~~~---t~~~~vya~GD~~~~~~~~~~~~~ 337 (461)
|+++||++ +++|.||+|+|++|++++ ++.. ... .++.+.++.+.+ +++|+||++||+....
T Consensus 270 v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-------- 341 (447)
T 2gv8_A 270 IYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV-------- 341 (447)
T ss_dssp EEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSC--------
T ss_pred EEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEecccccc--------
Confidence 88899976 799999999999999988 5431 111 234455555555 6899999999998652
Q ss_pred eeccHHHHHHHHHHHHHHHhccc
Q 012545 338 RVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 338 ~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.+..|..||+.+|+++.+..
T Consensus 342 ---~~~~a~~qa~~~a~~~~g~~ 361 (447)
T 2gv8_A 342 ---PFPTSQAQAAFLARVWSGRL 361 (447)
T ss_dssp ---HHHHHHHHHHHHHHHHTTSS
T ss_pred ---CchHHHHHHHHHHHHHcCCC
Confidence 46778899999999998753
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=265.12 Aligned_cols=257 Identities=16% Similarity=0.107 Sum_probs=188.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+|||||+||++||.+|++. ++ |+|+|+++...+.....+... ..++. ........+.
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~---V~vie~~~~~GG~~~~~~~~~------~g~~~--------~~~~~~~~l~ 168 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LT---VALIEERGWLGGDMWLKGIKQ------EGFNK--------DSRKVVEELV 168 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CC---EEEECTTSSSSCSGGGTCSEE------TTTTE--------EHHHHHHHHH
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CC---EEEEeCCCCCCCeeecccccc------CCCCC--------CHHHHHHHHH
Confidence 357999999999999999999998 65 999999976543321111000 00110 0001111211
Q ss_pred ---HcCcEEEcCCeEEEEeCCCCEEEc---CCCc--EEecCEEEEccCCCccccccccccccCccccccccCCccccccc
Q 012545 84 ---EKGIELILSTEIVRADIASKTLLS---ATGL--IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLR 155 (461)
Q Consensus 84 ---~~~v~~~~~~~v~~i~~~~~~v~~---~~~~--~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~ 155 (461)
+.+++++.++.+..++.+.+.+.+ .+++ ++.||++|+|||+.+..|
T Consensus 169 ~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~-------------------------- 222 (493)
T 1y56_A 169 GKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM-------------------------- 222 (493)
T ss_dssp HTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCC--------------------------
T ss_pred HHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCC--------------------------
Confidence 458999999889888877654332 3443 689999999999998432
Q ss_pred ccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHH
Q 012545 156 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA 235 (461)
Q Consensus 156 ~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~ 235 (461)
+ ++|.+.+++++.. ++..+.+.....++++++|+|+|++|+|
T Consensus 223 -~---~~g~~~~gv~~~~---~~~~~~~~~~~~~~~~vvViGgG~~gle------------------------------- 264 (493)
T 1y56_A 223 -L---FENNDMPGVFRRD---FALEVMNVWEVAPGRKVAVTGSKADEVI------------------------------- 264 (493)
T ss_dssp -C---CTTTTSTTEEEHH---HHHHHHHTSCBCSCSEEEEESTTHHHHH-------------------------------
T ss_pred -C---CCCCCCCCEEEcH---HHHHHHHhcccCCCCEEEEECCCHHHHH-------------------------------
Confidence 2 5666667787643 4444433332335689999999999988
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc---CCCcEE-eCC
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE---NKGGIE-TDD 310 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~---~~g~i~-vd~ 310 (461)
+.+++.||++++++.|+++.. ++.+..+.+++|+++++|.||+|+|++|+.++++. ++.. ++|+|. ||+
T Consensus 265 ----~~l~~~GV~v~~~~~v~~i~~--~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~ 338 (493)
T 1y56_A 265 ----QELERWGIDYVHIPNVKRVEG--NEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDE 338 (493)
T ss_dssp ----HHHHHHTCEEEECSSEEEEEC--SSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCT
T ss_pred ----HHHHhCCcEEEeCCeeEEEec--CCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeecccc
Confidence 456788999999999999986 34455778899999999999999999999988753 3433 467787 899
Q ss_pred CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 311 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 311 ~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++| +.|+|||+|||++. ..+..|..||+.||.+|.+..
T Consensus 339 ~~~-s~~~vya~GD~~~~-----------~~~~~A~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 339 YHR-IKDGIYVAGSAVSI-----------KPHYANYLEGKLVGAYILKEF 376 (493)
T ss_dssp TSE-EETTEEECSTTTCC-----------CCHHHHHHHHHHHHHHHHHHT
T ss_pred ccC-cCCCEEEEeccCCc-----------cCHHHHHHHHHHHHHHHHHHc
Confidence 999 99999999999975 357789999999999998764
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=282.08 Aligned_cols=289 Identities=18% Similarity=0.171 Sum_probs=201.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+|||||+||++||..|+++|++ |+|+|+++..... +... ..+|+.... ..........+.
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~~G~~---V~liE~~~~~GG~-------~~~~---~~~p~~~~~--~~~~~~~~~~~~ 454 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGVRGYD---VVLAEAGRDLGGR-------VTQE---SALPGLSAW--GRVKEYREAVLA 454 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSCTH-------HHHH---HTSTTCGGG--GHHHHHHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCE-------eeec---cCCCchhHH--HHHHHHHHHHHH
Confidence 468999999999999999999999987 9999998643311 1100 011111100 000112334445
Q ss_pred Hc-CcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 84 EK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 84 ~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
+. +++++.++.+ ...+.+++.||+||+|||+.+..+.+++. ..++ ++
T Consensus 455 ~~~gv~~~~~~~v----------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~-------------------~~~~---i~ 502 (690)
T 3k30_A 455 ELPNVEIYRESPM----------TGDDIVEFGFEHVITATGATWRTDGVARF-------------------HTTA---LP 502 (690)
T ss_dssp TCTTEEEESSCCC----------CHHHHHHTTCCEEEECCCEEECSSCCSSS-------------------CSSC---CC
T ss_pred HcCCCEEEECCee----------cHHHHhhcCCCEEEEcCCCcccccccccc-------------------CCCC---CC
Confidence 55 8888887543 22334457899999999999632222221 1122 55
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEEC--CCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVG--GGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG--~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
|.+..++++. .+.... ....+++++||| +|++|+|+|..|.+.|.+|+++++.+.+++...++.....+.+
T Consensus 503 G~~~~~v~~~---~~~l~~----~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~ 575 (690)
T 3k30_A 503 IAEGMQVLGP---DDLFAG----RLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQR 575 (690)
T ss_dssp BCTTSEEECH---HHHHTT----CCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHH
T ss_pred CCCCCcEEcH---HHHhCC----CCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHH
Confidence 6555555533 222111 122467899999 9999999999999999999999999988776444666788899
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEE---eCCCcEEecCEEEEccCCCCChhhhhcccccCCCcEEeCCCCCCCCC
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSAD 317 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~ 317 (461)
.|++.||+++++++|++++. ++ ..+. +.+++++++|.||+|+|++|+.+++..... .+. +|+.|
T Consensus 576 ~l~~~GV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~--~~~-------~t~~~ 642 (690)
T 3k30_A 576 RLIENGVARVTDHAVVAVGA--GG--VTVRDTYASIERELECDAVVMVTARLPREELYLDLVA--RRD-------AGEIA 642 (690)
T ss_dssp HHHHTTCEEEESEEEEEEET--TE--EEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHH--HHH-------HTSCS
T ss_pred HHHHCCCEEEcCcEEEEEEC--Ce--EEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhh--hhc-------ccCCC
Confidence 99999999999999999975 33 2333 235668999999999999999987753211 111 88999
Q ss_pred CEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCC
Q 012545 318 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY 370 (461)
Q Consensus 318 ~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 370 (461)
+|||+|||+.. +.+..|..||+.||.+|.+.+.+.+..+|..
T Consensus 643 ~VyaiGD~~~~-----------~~~~~A~~~g~~aa~~i~~~l~g~~~~p~~~ 684 (690)
T 3k30_A 643 SVRGIGDAWAP-----------GTIAAAVWSGRRAAEEFDAVLPSNDEVPFRR 684 (690)
T ss_dssp EEEECGGGTSC-----------BCHHHHHHHHHHHHHHTTCCCCCTTSCSSCC
T ss_pred CEEEEeCCCch-----------hhHHHHHHHHHHHHHHHHhhccCCCCCCcCh
Confidence 99999999975 3567799999999999998876655555543
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=282.60 Aligned_cols=306 Identities=15% Similarity=0.157 Sum_probs=197.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+|||||+||++||..|++.|++ |+|+|+++..... +... ..+|++.. .....++++.
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~---Vtlie~~~~~GG~-------~~~~---~~~pg~~~------~~~~~~~~~~ 449 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKIGGH-------LNQV---AALPGLGE------WSYHRDYRET 449 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTT-------HHHH---TTSTTCGG------GHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCe-------eeec---ccCCChHH------HHHHHHHHHH
Confidence 57999999999999999999999987 9999998653211 1110 11121110 0011111111
Q ss_pred cCcEEE--cCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 85 KGIELI--LSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 85 ~~v~~~--~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
.++.+ .+.....+.. ++.+.+.++..+.||+||+|||+.+..+.++. | ..++ +|
T Consensus 450 -~i~~~~~~~~~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~---------------p----~~~~---ip 505 (729)
T 1o94_A 450 -QITKLLKKNKESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNC---------------L----THDP---IP 505 (729)
T ss_dssp -HHHHHHHHSTTCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCT---------------T----TSSC---CT
T ss_pred -HHHHhhcccCCceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccC---------------c----cCCC---CC
Confidence 01100 0011122222 23344445556899999999999852100000 0 1111 45
Q ss_pred CCC--CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEEC--CCHHHHHHHHHHHHCCCcEEEEccCCccCCc-ccCHHHHHH
Q 012545 163 GAD--AKNIFYLREIDDADKLVEAIKAKKNGKAVVVG--GGYIGLELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAF 237 (461)
Q Consensus 163 g~~--~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG--~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~ 237 (461)
|.+ ..++++. .++.. . ....+++|+||| +|++|+|+|..|++.|.+|+++++.+ +++. .++.. ...
T Consensus 506 G~~~~~~~v~~~---~~~l~--~--~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~ 576 (729)
T 1o94_A 506 GADASLPDQLTP---EQVMD--G--KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPN 576 (729)
T ss_dssp TCCTTSTTEECH---HHHHH--C--CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHH
T ss_pred CccccCCCEEEH---HHHhc--C--CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHH
Confidence 554 4566643 22211 1 122467999998 99999999999999999999999988 5442 12222 467
Q ss_pred HHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cE------------------EecCEEEEccCCCCChhhhhcc
Q 012545 238 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RT------------------LEADIVVVGVGGRPLISLFKGQ 298 (461)
Q Consensus 238 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~------------------i~aD~vi~a~G~~p~~~~~~~~ 298 (461)
+.+.|++.||+++++++++++.. ++......+.++ ++ +++|.||+|+|++|++++++..
T Consensus 577 ~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l 654 (729)
T 1o94_A 577 MMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNEL 654 (729)
T ss_dssp HHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHH
T ss_pred HHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHHH
Confidence 77889999999999999999974 332111111233 33 9999999999999999877532
Q ss_pred cccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEec
Q 012545 299 VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA 378 (461)
Q Consensus 299 ~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~ 378 (461)
.. .+|+++||+.|+|||+|||+.. ..+..|..||+.||.+|.+.. .+..+|+ ++..
T Consensus 655 -~~-----~vd~~~~t~~~~VyAiGD~~~~-----------~~~~~A~~~G~~aA~~i~~~l------~~~~~p~-~~~~ 710 (729)
T 1o94_A 655 -KA-----RESEWAENDIKGIYLIGDAEAP-----------RLIADATFTGHRVAREIEEAN------PQIAIPY-KRET 710 (729)
T ss_dssp -HH-----TGGGTGGGTCCEEEECGGGTSC-----------CCHHHHHHHHHHHHHTTTSSC------TTSCCCC-CCCC
T ss_pred -hh-----hcccccccCCCCeEEEeCccch-----------hhHHHHHHHHHHHHHHhhhhc------ccCCCCe-eeec
Confidence 11 2688999999999999999973 457789999999999998754 3455676 5666
Q ss_pred CCcceEEccC
Q 012545 379 FDLSWQFYGD 388 (461)
Q Consensus 379 ~~~~~~~~g~ 388 (461)
+++.++.+|.
T Consensus 711 ~~~~~~~~~~ 720 (729)
T 1o94_A 711 IAWGTPHMPG 720 (729)
T ss_dssp CCTTCCSSTT
T ss_pred ccCcccccCC
Confidence 7776665553
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-28 Score=250.97 Aligned_cols=299 Identities=16% Similarity=0.212 Sum_probs=191.5
Q ss_pred CCeEEEEcCChHHHHHHHHHH-HcCCCCCcEEEEeCCCCCC-------CCCC--cc-cccccCCCC-----CCCCCCcee
Q 012545 5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEAVAP-------YERP--AL-SKAYLFPEG-----TARLPGFHV 68 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~-~~g~~~~~V~vie~~~~~~-------~~~~--~~-~~~~~~~~~-----~~~~~~~~~ 68 (461)
.+||+|||||++|+++|..|+ +.|++ |+|+|+++... |..+ .. +..+..... ...+... .
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~---v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~-~ 83 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLT---TVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTT-Y 83 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCC---EEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS-E
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCccc-C
Confidence 579999999999999999999 88876 99999986432 1110 00 000100000 0000000 0
Q ss_pred ecCCCCCCCCHhHHHHcCc--EEEcCCeEEEEeCCCC----EEEcCCCcEEecCEEEEccC--CCccccccccccccCcc
Q 012545 69 CVGSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVSITSLTSIRSKHCL 140 (461)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~liiAtG--~~~~~~~~~g~~~~~~~ 140 (461)
........++....++.++ ++.++++|.+++.+.. .|.+.+|+++.||+||+||| +.|.+|++||+.++.
T Consensus 84 ~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~-- 161 (540)
T 3gwf_A 84 ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFE-- 161 (540)
T ss_dssp EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCC--
T ss_pred CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccC--
Confidence 0000011223445567787 7888999999987665 67888888899999999999 689888888875311
Q ss_pred ccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 012545 141 CCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220 (461)
Q Consensus 141 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~ 220 (461)
| .+++.....+.. ...+++|+|||+|.+|+|+|..|++.+.+|++++
T Consensus 162 ----------------------g----~~~~~~~~~~~~-------~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~ 208 (540)
T 3gwf_A 162 ----------------------G----ETIHTAAWPEGK-------SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFV 208 (540)
T ss_dssp ----------------------S----EEEEGGGCCSSC-------CCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEE
T ss_pred ----------------------C----CEEEeecCCCcc-------ccccceEEEECCCchHHHHHHHHHhhCCEEEEEE
Confidence 0 111111100000 1157899999999999999999999999999999
Q ss_pred cCCcc-CCc---ccCHHHHHHHH---------------------------------------------------------
Q 012545 221 PEPWC-MPR---LFTADIAAFYE--------------------------------------------------------- 239 (461)
Q Consensus 221 ~~~~~-~~~---~~~~~~~~~~~--------------------------------------------------------- 239 (461)
|.+.+ ++. .+++...+.++
T Consensus 209 r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~ 288 (540)
T 3gwf_A 209 RTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGD 288 (540)
T ss_dssp SSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSC
T ss_pred CCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 99874 322 12222222111
Q ss_pred ----------------HH---------------------------------HHhcCcEEEc--CCcEEEEEecCCCCEEE
Q 012545 240 ----------------GY---------------------------------YANKGIKIIK--GTVAVGFTTNADGEVKE 268 (461)
Q Consensus 240 ----------------~~---------------------------------l~~~GV~v~~--~~~v~~i~~~~~g~~~~ 268 (461)
+. +.+.+|+++. +..|++++. + +
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~--~----g 362 (540)
T 3gwf_A 289 IATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA--K----G 362 (540)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS--S----E
T ss_pred hhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEec--C----e
Confidence 00 1144788885 678888865 3 5
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeC----------CCCCC-CCCCEEEe-CcccccCccccCc
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETD----------DFFKT-SADDVYAV-GDVATFPMKLYRE 335 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd----------~~~~t-~~~~vya~-GD~~~~~~~~~~~ 335 (461)
|.++||+++++|+||+|||++++..++.. .+. ..+++.++ ..+.+ +.||+|.+ |..+...
T Consensus 363 v~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~-g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~------ 435 (540)
T 3gwf_A 363 VVTEDGVLHELDVLVFATGFDAVDGNYRRIEIR-GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFT------ 435 (540)
T ss_dssp EEETTCCEEECSEEEECCCBSCSSHHHHTSEEE-CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCS------
T ss_pred EEcCCCCEEECCEEEECCccCccccCcCcceEE-CCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCc------
Confidence 88999999999999999999999854421 111 12233333 22333 78999999 8766521
Q ss_pred ceeeccHHHHHHHHHHHHHHHhcc
Q 012545 336 MRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 336 ~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.....+..|++++++.|...
T Consensus 436 ----s~~~~~e~q~~~i~~~i~~~ 455 (540)
T 3gwf_A 436 ----NLPPSIETQVEWISDTIGYA 455 (540)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHHH
Confidence 23456677888888877543
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=259.21 Aligned_cols=259 Identities=17% Similarity=0.210 Sum_probs=184.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+|||||+||++||..|++.|++ |+|+|+++...+. ..+.. .+++.... ......+..++++
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~---V~lie~~~~~gg~-~~~~~---------~~~~~~~~--~~~~~~~~~~~~~ 437 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGGQ-FNIAK---------QIPGKEEF--YETLRYYRRMIEV 437 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCTT-HHHHT---------TSTTCTTH--HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCe-eeccc---------cCCCHHHH--HHHHHHHHHHHHH
Confidence 58999999999999999999999876 9999998754322 00000 01110000 0000123455667
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEE-ecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIF-KYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~-~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.+++++.++.+.. ..+ .||+||+|||++|.+|.+||
T Consensus 438 ~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~~~i~G------------------------------ 474 (671)
T 1ps9_A 438 TGVTLKLNHTVTA-------------DQLQAFDETILASGIVPRTPPIDG------------------------------ 474 (671)
T ss_dssp HTCEEEESCCCCS-------------SSSCCSSEEEECCCEEECCCCCBT------------------------------
T ss_pred cCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcCCCCCCC------------------------------
Confidence 8999999865421 114 89999999999995554444
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC-----------------------------
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI----------------------------- 214 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~----------------------------- 214 (461)
.+..++++..+ . +.. ....+++|+|||+|++|+|+|..|++.|.
T Consensus 475 ~~~~~v~~~~~---~--l~~--~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~ 547 (671)
T 1ps9_A 475 IDHPKVLSYLD---V--LRD--KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQG 547 (671)
T ss_dssp TTSTTEEEHHH---H--HTS--CCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTC
T ss_pred CCCCcEeeHHH---H--hhC--CCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccc
Confidence 33345665421 1 110 11257899999999999999999998773
Q ss_pred --------cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEE
Q 012545 215 --------DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVV 284 (461)
Q Consensus 215 --------~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~ 284 (461)
+|+++++.+..+...+++.....+.+.|++.||++++++++++++. ++ ..++ .+| +++++|.||+
T Consensus 548 ~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~--v~~~-~~G~~~~i~~D~Vi~ 622 (671)
T 1ps9_A 548 MQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG--LHVV-INGETQVLAVDNVVI 622 (671)
T ss_dssp CCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TE--EEEE-ETTEEEEECCSEEEE
T ss_pred cccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce--EEEe-cCCeEEEEeCCEEEE
Confidence 4667777766665556777788888999999999999999999974 33 2232 577 5799999999
Q ss_pred ccCCCCChhhhhcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHH
Q 012545 285 GVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 356 (461)
Q Consensus 285 a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 356 (461)
|+|++||+++++.. +...++||++|||+.... ..+..|.+||..+|.||
T Consensus 623 a~G~~p~~~l~~~l--------------~~~g~~v~aiGD~~~~~~---------~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 623 CAGQEPNRALAQPL--------------IDSGKTVHLIGGCDVAME---------LDARRAIAQGTRLALEI 671 (671)
T ss_dssp CCCEEECCTTHHHH--------------HTTTCCEEECGGGTCCSS---------CCHHHHHHHHHHHHHHC
T ss_pred CCCccccHHHHHHH--------------HhcCCCEEEECCcCccCc---------hhHHHHHHHHHHHHHhC
Confidence 99999999876521 122478999999998653 35889999999999885
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=237.90 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=121.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCC--cc-cccccCCCCCC--CCCCceee--
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERP--AL-SKAYLFPEGTA--RLPGFHVC-- 69 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~--~~-~~~~~~~~~~~--~~~~~~~~-- 69 (461)
..+||||||||++|+++|..|++.|++ |+|||+++... |..+ .. +..+....... .-+.+...
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~ 96 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLT---VRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYA 96 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSC
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCC
Confidence 357999999999999999999999886 99999976422 1110 00 00010000000 00000000
Q ss_pred cCCCCCCCCHhHHHHcCc--EEEcCCeEEEEeCCCC----EEEcCCCcEEecCEEEEccC--CCccccccccccccCccc
Q 012545 70 VGSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVSITSLTSIRSKHCLC 141 (461)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~liiAtG--~~~~~~~~~g~~~~~~~~ 141 (461)
...+...++....++.++ ++.++++|++++.+.. .|.+.+|+++.||+||+||| +.|.+|++||+.++.-
T Consensus 97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g-- 174 (549)
T 4ap3_A 97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTG-- 174 (549)
T ss_dssp BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCS--
T ss_pred CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCC--
Confidence 000011123344566787 7889999999987665 68888898899999999999 8998898888753110
Q ss_pred cccccCCcccccccccCCCCCCCCCCCEEEeCCHH-HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 012545 142 CFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220 (461)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~ 220 (461)
.+++..... +... ..+++|+|||+|.+|+|+|..|++.+.+|++++
T Consensus 175 --------------------------~~~~~~~~~~~~~~-------~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~ 221 (549)
T 4ap3_A 175 --------------------------DIVHTARWPHDGVD-------FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQ 221 (549)
T ss_dssp --------------------------EEEEGGGCCTTCCC-------CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred --------------------------ceEEeccccccccc-------cCCCEEEEECCCchHHHHHHHHHhhCCEEEEEE
Confidence 111111110 0101 147899999999999999999999999999999
Q ss_pred cCCcc
Q 012545 221 PEPWC 225 (461)
Q Consensus 221 ~~~~~ 225 (461)
|.+.+
T Consensus 222 r~~~~ 226 (549)
T 4ap3_A 222 RSANY 226 (549)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 99874
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=237.09 Aligned_cols=191 Identities=17% Similarity=0.183 Sum_probs=117.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CC--CCcccc---cccCCCCCCCCCCceeec-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YE--RPALSK---AYLFPEGTARLPGFHVCV- 70 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~--~~~~~~---~~~~~~~~~~~~~~~~~~- 70 (461)
..+||||||||++|+++|..|++.|++ |+|||+++... |. ++.... .+.+......-..+....
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~---v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~ 84 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMK---VLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFA 84 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCC
Confidence 458999999999999999999999886 99999986421 11 000000 000000000000000000
Q ss_pred -CCCCCCCCHhHHHHcCc--EEEcCCeEEEEeCCCC----EEEcCCCcEEecCEEEEccC--CCccccccccccccCccc
Q 012545 71 -GSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVSITSLTSIRSKHCLC 141 (461)
Q Consensus 71 -~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~liiAtG--~~~~~~~~~g~~~~~~~~ 141 (461)
..+...++....++.++ .+.++++|..++.+.. .|.+.+|+++.||+||+||| +.|.+|++||+.++.-..
T Consensus 85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (545)
T 3uox_A 85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES 164 (545)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence 00001123344556676 6888889999987654 68888898899999999999 899999999986421111
Q ss_pred cccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 142 CFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
....+ .+. ..++.. . .. ...+++|+|||+|.+|+|+|..|++.+.+|++++|
T Consensus 165 ~h~~~---------~~~-~~~~~~--~---------~~-------~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r 216 (545)
T 3uox_A 165 FHSSR---------WPT-DAEGAP--K---------GV-------DFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQR 216 (545)
T ss_dssp EEGGG---------CCB-CTTSCB--S---------CC-------CCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEES
T ss_pred EEccc---------ccc-cccccc--c---------cc-------ccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEc
Confidence 11000 000 000000 0 00 01478999999999999999999999999999999
Q ss_pred CCcc
Q 012545 222 EPWC 225 (461)
Q Consensus 222 ~~~~ 225 (461)
.+.+
T Consensus 217 ~~~~ 220 (545)
T 3uox_A 217 TPNW 220 (545)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 9874
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-25 Score=226.47 Aligned_cols=302 Identities=13% Similarity=0.170 Sum_probs=184.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--C-CCcccccccCCCCCCCCC---C----ceeecCC-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--E-RPALSKAYLFPEGTARLP---G----FHVCVGS- 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~-~~~~~~~~~~~~~~~~~~---~----~~~~~~~- 72 (461)
..+||+|||||++|+++|..|++.|++ |+|+|+++.... . .+..............+. . +.+....
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~ 91 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA 91 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccC
Confidence 358999999999999999999999986 999999865320 0 000000000000000000 0 0000000
Q ss_pred ---CCCCCCHhHHHHcC--cEEEcCCeEEEEeCCCC----EEEcCCCcEEecCEEEEccC--CCccccccccccccCccc
Q 012545 73 ---GGERLLPEWYKEKG--IELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVSITSLTSIRSKHCLC 141 (461)
Q Consensus 73 ---~~~~~~~~~~~~~~--v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~liiAtG--~~~~~~~~~g~~~~~~~~ 141 (461)
+...++....++.+ ..+.++++|.+++.+.. .|.+.+|+++.+|+||+|+| +.|.+|++||+..+
T Consensus 92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f---- 167 (542)
T 1w4x_A 92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDF---- 167 (542)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGC----
T ss_pred CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccC----
Confidence 00011222234444 56888999999876442 57777888899999999999 57888888887431
Q ss_pred cccccCCcccccccccCCCCCCCCCCCEEEeCCHH-HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 012545 142 CFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220 (461)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~ 220 (461)
.| .+++..... +.. ...+++|+|||+|.+|+|++..+++.+.+|+++.
T Consensus 168 --------------------~G----~~~hs~~~~~~~~-------~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~ 216 (542)
T 1w4x_A 168 --------------------AG----NLYHTGNWPHEPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ 216 (542)
T ss_dssp --------------------CS----EEEEGGGCCSSCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred --------------------CC----ceEECCCCCCchh-------ccCCCEEEEECCCccHHHHHHHHhhcCceEEEEE
Confidence 11 011111000 000 0147999999999999999999999999999999
Q ss_pred cCCccC-Cc---ccCHHHH-------------------------------------------------------------
Q 012545 221 PEPWCM-PR---LFTADIA------------------------------------------------------------- 235 (461)
Q Consensus 221 ~~~~~~-~~---~~~~~~~------------------------------------------------------------- 235 (461)
|.+.+. +. .+.+...
T Consensus 217 r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~ 296 (542)
T 1w4x_A 217 RTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDIL 296 (542)
T ss_dssp SSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTT
T ss_pred cCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHh
Confidence 987652 21 0111111
Q ss_pred ----------HHHHHHH-----------------------------------HhcCcEEE--cCCcEEEEEecCCCCEEE
Q 012545 236 ----------AFYEGYY-----------------------------------ANKGIKII--KGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 236 ----------~~~~~~l-----------------------------------~~~GV~v~--~~~~v~~i~~~~~g~~~~ 268 (461)
+.+.+.+ .+.+|+++ .+..|++++. + +
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~--~----g 370 (542)
T 1w4x_A 297 RDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP--R----G 370 (542)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS--S----E
T ss_pred cChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC--C----e
Confidence 0111111 11346665 3567888864 2 5
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhhhcc-cccCCCcEEeCCC----------CCC-CCCCEEEe-CcccccCccccCc
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLFKGQ-VAENKGGIETDDF----------FKT-SADDVYAV-GDVATFPMKLYRE 335 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~-~~~~~g~i~vd~~----------~~t-~~~~vya~-GD~~~~~~~~~~~ 335 (461)
|.++| +++++|.||+|||+++++.++... +. ..+++.+++. +.+ +.||+|++ |+.+....
T Consensus 371 v~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~-g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~----- 443 (542)
T 1w4x_A 371 VRTSE-REYELDSLVLATGFDALTGALFKIDIR-GVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSAL----- 443 (542)
T ss_dssp EEESS-CEEECSEEEECCCCCCTTHHHHTSEEE-CGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGG-----
T ss_pred EEeCC-eEEecCEEEEcCCccccccCcCceeeE-CCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCccc-----
Confidence 88889 899999999999999987766432 22 2234444432 222 67888887 87764221
Q ss_pred ceeeccH-HHHHHHHHHHHHHHhccc
Q 012545 336 MRRVEHV-DHARKSAEQAVKTIMATE 360 (461)
Q Consensus 336 ~~~~~~~-~~A~~~g~~aa~~i~~~~ 360 (461)
+++ ..|..|++.++++|....
T Consensus 444 ----~~~~~~~e~q~~~ia~~i~~~~ 465 (542)
T 1w4x_A 444 ----SNMLVSIEQHVEWVTDHIAYMF 465 (542)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHH
Confidence 334 678889999999987643
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=180.33 Aligned_cols=158 Identities=19% Similarity=0.169 Sum_probs=132.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------cc-----CHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LF-----TADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
+++|||+|++|+++|..|++.|.+|+++++.+..+.. .+ ++++.+.+.+.+++.|++++.+ +|+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 6899999999999999999999999999998765521 12 5788999999999999999999 99999
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCccee
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 338 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~ 338 (461)
+.++++ ..+++++| ++++|.||+|+|.+|+.. -..++..++|.|.||+++||+.|+|||+|||+..+.
T Consensus 82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~~~-~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~-------- 149 (180)
T 2ywl_A 82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPTLP-SLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVP-------- 149 (180)
T ss_dssp EECSSS--EEEECSSC-EEEEEEEEECCTTCCHHH-HHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCS--------
T ss_pred EEcCCE--EEEEECCC-EEEECEEEECCCCCCCcc-ccCCCCccCceEEeCCCCCcCCCCEEEeecccCcch--------
Confidence 874333 56888888 899999999999999641 223444457889999999999999999999998753
Q ss_pred eccHHHHHHHHHHHHHHHhcccCCC
Q 012545 339 VEHVDHARKSAEQAVKTIMATEGGK 363 (461)
Q Consensus 339 ~~~~~~A~~~g~~aa~~i~~~~~~~ 363 (461)
+++..|..||+.||.||.+...+.
T Consensus 150 -~~~~~A~~~g~~aa~~i~~~~~~~ 173 (180)
T 2ywl_A 150 -GHAIISAGDGAYVAVHLVSDLRGE 173 (180)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -hhHHHHHHhHHHHHHHHHHHhhhc
Confidence 368889999999999999765443
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=177.97 Aligned_cols=290 Identities=13% Similarity=0.083 Sum_probs=163.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCC-----------CCcEEEEeCCCCCCCCCCcc-cccccCCCCCCCC-----CCce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVK-----------PGELAIISKEAVAPYERPAL-SKAYLFPEGTARL-----PGFH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~-----------~~~V~vie~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~ 67 (461)
.+||||||+||+||++|..|.+.|.+ ....+.+|+.+.+.|+..++ ....+......++ |...
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~ 118 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS 118 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence 58999999999999999999886532 12468899988777654321 1111110000000 1000
Q ss_pred ee--------------cC-CC------CCCCCHhHH-HHcCcEEEcCCeEEEEeCCC----------CEEEcCCC-----
Q 012545 68 VC--------------VG-SG------GERLLPEWY-KEKGIELILSTEIVRADIAS----------KTLLSATG----- 110 (461)
Q Consensus 68 ~~--------------~~-~~------~~~~~~~~~-~~~~v~~~~~~~v~~i~~~~----------~~v~~~~~----- 110 (461)
+. .. .. ....+.+|+ ++.+..+.++++|+++.+.. -+|++.++
T Consensus 119 ~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~ 198 (501)
T 4b63_A 119 FTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEI 198 (501)
T ss_dssp TSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCE
T ss_pred cchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceE
Confidence 00 00 00 001112222 33456688888999886432 23444332
Q ss_pred cEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCC
Q 012545 111 LIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 190 (461)
Q Consensus 111 ~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 190 (461)
+++.+++||+|||..|.+|.+++ . ...+++...+.....-.. -....+
T Consensus 199 ~~~~ar~vVlatG~~P~iP~~~~------------------------------~-~g~v~Hss~y~~~~~~~~-~~~~~g 246 (501)
T 4b63_A 199 SARRTRKVVIAIGGTAKMPSGLP------------------------------Q-DPRIIHSSKYCTTLPALL-KDKSKP 246 (501)
T ss_dssp EEEEEEEEEECCCCEECCCTTSC------------------------------C-CTTEEEGGGHHHHHHHHS-CCTTSC
T ss_pred EEEEeCEEEECcCCCCCCCCCCC------------------------------C-Ccceeeccccccchhhcc-ccccCC
Confidence 36889999999998875442211 1 245777665543222100 011368
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCc--------ccCHHH-----------HHH------------
Q 012545 191 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR--------LFTADI-----------AAF------------ 237 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~--------~~~~~~-----------~~~------------ 237 (461)
|+|+|||+|.+|+|++..|.+. +.+|+++.|.+.+.+. .+.++. .+.
T Consensus 247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~ 326 (501)
T 4b63_A 247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSV 326 (501)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSC
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999764 7899999998765432 111111 111
Q ss_pred --------HHH-----HHH-----hcCcEEEcCCcEEEEEecCC-CCE-----------EEEEeCCCcEEecCEEEEccC
Q 012545 238 --------YEG-----YYA-----NKGIKIIKGTVAVGFTTNAD-GEV-----------KEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 238 --------~~~-----~l~-----~~GV~v~~~~~v~~i~~~~~-g~~-----------~~v~~~~G~~i~aD~vi~a~G 287 (461)
+.+ .+. .....+..+..+.++..... +++ ..+.+.+|+++++|.||+|||
T Consensus 327 v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATG 406 (501)
T 4b63_A 327 VRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATG 406 (501)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCC
T ss_pred cCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcC
Confidence 101 111 01124555555555543221 111 235567889999999999999
Q ss_pred CCCChh-hhhc---cccc-CCCcEEeCCCCCC--------CCCCEEEeCccc
Q 012545 288 GRPLIS-LFKG---QVAE-NKGGIETDDFFKT--------SADDVYAVGDVA 326 (461)
Q Consensus 288 ~~p~~~-~~~~---~~~~-~~g~i~vd~~~~t--------~~~~vya~GD~~ 326 (461)
++|+.. ++.. .+.. .+|.+.|+..++. ..++||+.|-+-
T Consensus 407 y~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~ 458 (501)
T 4b63_A 407 YNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNE 458 (501)
T ss_dssp EECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCH
T ss_pred CCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCc
Confidence 998864 2222 1222 5678888876653 246799999544
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-19 Score=179.98 Aligned_cols=221 Identities=13% Similarity=0.084 Sum_probs=125.4
Q ss_pred HHHHcCcEEEcCCeEEEEeCCCCEE---Ec-CCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccc
Q 012545 81 WYKEKGIELILSTEIVRADIASKTL---LS-ATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRL 156 (461)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v---~~-~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~ 156 (461)
.+++.+++++.++.+ ++..+...+ .+ .++.++.+|.+|+|||+.+.++.++.
T Consensus 128 ~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~----------------------- 183 (472)
T 2e5v_A 128 LAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSS----------------------- 183 (472)
T ss_dssp HHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBS-----------------------
T ss_pred HHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCcccc-----------------------
Confidence 335679999999889 887655543 33 23335789999999999884322110
Q ss_pred cCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhc---C-CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCH
Q 012545 157 TDFGVEGADAKNIFYLREIDDADKLVEAIKAK---K-NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA 232 (461)
Q Consensus 157 ~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~---~-~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~ 232 (461)
. .++...+++ .-+.+.-..+... . ...++++|+| +++++..+...|..+ +..+.+++++. +++
T Consensus 184 ~---~~~~tGdgi------~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~ 250 (472)
T 2e5v_A 184 T---QSTNIGDGM------AIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDK 250 (472)
T ss_dssp S---CTTCSCHHH------HHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCT
T ss_pred C---CCCCchHHH------HHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCc
Confidence 0 011111110 0000000000000 0 1133455666 788888888889887 78888888865 344
Q ss_pred HH--------HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEe-cCEEEEccCCCCChhhhhcc--ccc
Q 012545 233 DI--------AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVGVGGRPLISLFKGQ--VAE 301 (461)
Q Consensus 233 ~~--------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~-aD~vi~a~G~~p~~~~~~~~--~~~ 301 (461)
+. ...+.+.+++.|. ++++... + +. +. +.++ .+.++++.|..|+ ++++.. ...
T Consensus 251 ~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~----~~------~~--~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~ 314 (472)
T 2e5v_A 251 RGELAPRDILSRAIYIEMLKGHK-VFIDLSK--I----ED------FE--RKFPVVAKYLARHGHNYK-VKIPIFPAAHF 314 (472)
T ss_dssp TGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--C----TT------HH--HHCHHHHHHHHHTTCCTT-SCEECEEEEEE
T ss_pred ccCcCchhHHHHHHHHHHHhCCc-EEEeccc--h----HH------HH--HHhHHHHHHHHHhCcCcc-cceEeehhhce
Confidence 32 5566666666653 3322110 0 00 00 1233 3667788999998 655432 112
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCcceee--ccHHHHHHHHHHHHHHHhc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV--EHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~~--~~~~~A~~~g~~aa~~i~~ 358 (461)
..|+|.||+++||++|+|||+|||+. .... .. +. .....+...|+.|++++.+
T Consensus 315 ~~GGI~vd~~~~t~ipgLyAaGd~a~~~~hg---~~-rl~~~sl~~~~v~G~~a~~~~a~ 370 (472)
T 2e5v_A 315 VDGGIRVNIRGESNIVNLYAIGEVSDSGLHG---AN-RLASNSLLEGLVFGINLPRYVDS 370 (472)
T ss_dssp ESCEEECCTTCBCSSBTEEECGGGEECSSST---TS-CCTTHHHHHHHHHHHHGGGTTTS
T ss_pred eCCCeEECCCCccccCCEEecchhcccccCC---CC-CCCcccHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999997 3211 11 11 1233444556666666553
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=135.73 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=112.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-----------------cCCcc------cCHHHHHHHHHHHHhc-C
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------------CMPRL------FTADIAAFYEGYYANK-G 246 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-----------------~~~~~------~~~~~~~~~~~~l~~~-G 246 (461)
.+|+|||+|+.|+++|..|++.|.+|+++++... +.... ....+.+.+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999999999998621 11000 1236677888889887 9
Q ss_pred cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh--------------------hhh----hcccccC
Q 012545 247 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI--------------------SLF----KGQVAEN 302 (461)
Q Consensus 247 V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~--------------------~~~----~~~~~~~ 302 (461)
++++ +++|+++.. +++.+..|.+.+|+++.+|.||+|+|..++. .+. +.++...
T Consensus 84 v~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~ 161 (232)
T 2cul_A 84 LHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV 161 (232)
T ss_dssp EEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred cEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence 9999 579999987 3455667888999899999999999984432 121 1122221
Q ss_pred CCc----------------EEeC-------CCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 303 KGG----------------IETD-------DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 303 ~g~----------------i~vd-------~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.+. ..+. ...+|++|+|||+|||+ .. ..+..|..||+.+|.+|...
T Consensus 162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~----------g~~~~~~~~g~~~a~~i~~~ 230 (232)
T 2cul_A 162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-RE----------GDYARMSEEGKRLAEHLLHE 230 (232)
T ss_dssp EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SC----------CCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cC----------ccHHHHHHHHHHHHHHHHhh
Confidence 100 1111 01127999999999999 53 36778899999999999864
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-16 Score=152.20 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=74.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-------CCCccc------ccccCCCCCCCCC---
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-------ERPALS------KAYLFPEGTARLP--- 64 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~~~------~~~~~~~~~~~~~--- 64 (461)
|| +.+||+|||||++|++||..|+++|.+ |+|+|+++.... .++.+. ..++.. ......
T Consensus 1 MM-~~~dViIIGgG~aGl~aA~~la~~G~~---V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~-~~~~~~~~l 75 (401)
T 2gqf_A 1 MS-QYSENIIIGAGAAGLFCAAQLAKLGKS---VTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ-NPHFVKSAL 75 (401)
T ss_dssp CE-EECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECS-CTTSTHHHH
T ss_pred CC-CCCCEEEECCcHHHHHHHHHHHhCCCC---EEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccC-CHHHHHHHH
Confidence 55 479999999999999999999999987 999999874310 111111 011100 000000
Q ss_pred ---------------Ccee-------ecCCCC----CCCCHhHHHHcCcEEEcCCeEEEEeCC----CC--EEEcCCCcE
Q 012545 65 ---------------GFHV-------CVGSGG----ERLLPEWYKEKGIELILSTEIVRADIA----SK--TLLSATGLI 112 (461)
Q Consensus 65 ---------------~~~~-------~~~~~~----~~~~~~~~~~~~v~~~~~~~v~~i~~~----~~--~v~~~~~~~ 112 (461)
++.. .+.... ...+.+.+++.|++++.+++|+++..+ .. .|.+.++ +
T Consensus 76 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~ 154 (401)
T 2gqf_A 76 ARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-Q 154 (401)
T ss_dssp HHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-E
T ss_pred HhCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-E
Confidence 0000 000000 012334455679999999999998754 33 3555555 6
Q ss_pred EecCEEEEccCCCc
Q 012545 113 FKYQILVIATGSTV 126 (461)
Q Consensus 113 ~~~d~liiAtG~~~ 126 (461)
+.+|++|+|||+.+
T Consensus 155 i~ad~VVlAtG~~s 168 (401)
T 2gqf_A 155 WQCKNLIVATGGLS 168 (401)
T ss_dssp EEESEEEECCCCSS
T ss_pred EECCEEEECCCCcc
Confidence 99999999999887
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.9e-13 Score=132.77 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC--------CCCChhhhhcc-cc-
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--------GRPLISLFKGQ-VA- 300 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G--------~~p~~~~~~~~-~~- 300 (461)
+..+...+.+.+++.| +++++++|++|+.++++ ..|++.+|+++.||.||+|+| +.|+++..... +.
T Consensus 203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~ 279 (431)
T 3k7m_X 203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDV--VNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE 279 (431)
T ss_dssp TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSS--EEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh
Confidence 4445666667777778 99999999999874333 468889998899999999999 88887654322 11
Q ss_pred -cCCCcEEeCCCCCCCCCCEEEeCcccc
Q 012545 301 -ENKGGIETDDFFKTSADDVYAVGDVAT 327 (461)
Q Consensus 301 -~~~g~i~vd~~~~t~~~~vya~GD~~~ 327 (461)
.....++|+..++|+.+++|+.||+..
T Consensus 280 ~~~~~~~kv~~~~~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 280 GHGGQGLKILIHVRGAEAGIECVGDGIF 307 (431)
T ss_dssp CCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred CCCcceEEEEEEECCCCcCceEcCCCCE
Confidence 234569999999999999999999854
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.33 E-value=8.7e-12 Score=128.40 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=91.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC-CCCCCCcccccccCCC----CCCCCCC------------c
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-APYERPALSKAYLFPE----GTARLPG------------F 66 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~-~~~~~~~~~~~~~~~~----~~~~~~~------------~ 66 (461)
..+||||||||+||++||..|++.|.+ |+|+|++.. .....|..+.+..... ....+.+ +
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f 103 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQ---TLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF 103 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCC---EEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence 468999999999999999999999987 999999842 2211121111100000 0000000 0
Q ss_pred eeec---CC------------CCCCCCHhHHHH-cCcEEEcCCeEEEEeCCCC---EEEcCCCcEEecCEEEEccCCCcc
Q 012545 67 HVCV---GS------------GGERLLPEWYKE-KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 67 ~~~~---~~------------~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.... +. .....+.+.+++ .|++++. ++|..+..+.. .|.+.+|.++.+|.||+|||+.+.
T Consensus 104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~-~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQ-QAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEE-EEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 0000 00 000112234445 5899965 58999876544 356677888999999999999884
Q ss_pred ccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHH
Q 012545 128 ITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 207 (461)
Q Consensus 128 ~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~ 207 (461)
.+.+ +|... . .+.+ +| +.++.+++.
T Consensus 183 ~~~i------------------------------~G~~~--------~-------------~~gr---iG-g~~a~eLA~ 207 (651)
T 3ces_A 183 GKIH------------------------------IGLDN--------Y-------------SGGR---AG-DPPSIPLSR 207 (651)
T ss_dssp CEEE------------------------------CC--------------------------------------CCHHHH
T ss_pred Cccc------------------------------cCccc--------C-------------CCCC---cc-chhhhHHHH
Confidence 3322 22210 0 1223 45 788999999
Q ss_pred HHHHCCCcEEEEc
Q 012545 208 ALKINNIDVSMVY 220 (461)
Q Consensus 208 ~l~~~g~~Vtli~ 220 (461)
.|.+.|.+|+.+.
T Consensus 208 ~L~~lG~~v~~~~ 220 (651)
T 3ces_A 208 RLRELPLRVGRLK 220 (651)
T ss_dssp HHHTTTCCEEEEC
T ss_pred HHHhcCCeEEEec
Confidence 9999999998875
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-12 Score=118.60 Aligned_cols=167 Identities=15% Similarity=0.095 Sum_probs=116.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccCCccCCcc-------------------------------------cC
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRL-------------------------------------FT 231 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~~~-------------------------------------~~ 231 (461)
...|+|||+|++|+.+|..|++. |.+|+++++.+.+.... ..
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 118 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 118 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence 35799999999999999999997 99999999887542110 12
Q ss_pred HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeC---------CC-----cEEecCEEEEccCCCCChhhh-
Q 012545 232 ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----RTLEADIVVVGVGGRPLISLF- 295 (461)
Q Consensus 232 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~G-----~~i~aD~vi~a~G~~p~~~~~- 295 (461)
.++...+.+.+.+ .|++++++++|+++.. +++.+..+.+. +| .++.+|.||+|+|..++....
T Consensus 119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~ 197 (284)
T 1rp0_A 119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG 197 (284)
T ss_dssp HHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence 3455566666655 6999999999999986 34555566553 32 579999999999987765322
Q ss_pred -----hcc--ccc-CCCcEEeCC-------CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 296 -----KGQ--VAE-NKGGIETDD-------FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 296 -----~~~--~~~-~~g~i~vd~-------~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
..+ +.. ...++.+|. +.+++.|++|++||++... ++.++..+.+..|..+|+.+|.++...+
T Consensus 198 ~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~~l 274 (284)
T 1rp0_A 198 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALKAL 274 (284)
T ss_dssp HHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHHHh
Confidence 111 111 223444442 3456789999999987431 2222233567788899999999998765
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=119.24 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=74.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCcccccccCCC----CCCCCCC------------c
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYLFPE----GTARLPG------------F 66 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~~~----~~~~~~~------------~ 66 (461)
..+||+|||||+||++||..|++.|.+ |+|+|++. ......|..+.+..... ....+.+ +
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~k---VlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f 102 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAK---TAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF 102 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence 358999999999999999999999987 99999984 22211121111100000 0000000 0
Q ss_pred eeec---CC------------CCCCCCHhHHHH-cCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCCCcc
Q 012545 67 HVCV---GS------------GGERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 67 ~~~~---~~------------~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.... +. .....+.+.+++ .|++++. .+|+.+..+... |.+.+|.++.+|.+|+|||+.+.
T Consensus 103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~-~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQ-EEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-SCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEE-eEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence 0000 00 000112233444 5899965 589988765543 66778888999999999999885
Q ss_pred cccccc
Q 012545 128 ITSLTS 133 (461)
Q Consensus 128 ~~~~~g 133 (461)
.+.++|
T Consensus 182 ~~~~~G 187 (637)
T 2zxi_A 182 GVIYIG 187 (637)
T ss_dssp CEEEET
T ss_pred Cceecc
Confidence 444444
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=112.65 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++++++|+++..++++. ..|.+.+| .++.||.||+|+|...
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGG-FELDFGGAEPMTLSCRVLINAAGLHA 209 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSS-EEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCce-EEEEECCCceeEEEeCEEEECCCcch
Confidence 56788888999999999999999999999844443 45888888 4899999999999764
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5e-11 Score=104.18 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=77.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCcee-ecCCCCCCCCHhHHHH
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWYKE 84 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (461)
+|++|||||++|+.+|..|++.|.+ |+|+|+.+..... . .....++++.. ..+......+.+.+++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~---v~lie~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 68 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLK---VLVLDGGRSKVKG-V---------SRVPNYPGLLDEPSGEELLRRLEAHARR 68 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCTTTT-C---------SCCCCSTTCTTCCCHHHHHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCcccC-c---------hhhhccCCCcCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999886 9999998632111 0 00111122100 0000112234556677
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
.+++++.+ ++.+++.++. .+.+.++ ++++|.+|+|+|..|.+++..|+
T Consensus 69 ~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g~ 118 (180)
T 2ywl_A 69 YGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLGL 118 (180)
T ss_dssp TTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHTC
T ss_pred cCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCCC
Confidence 89999999 9998876543 5677777 79999999999999855443443
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-11 Score=125.47 Aligned_cols=39 Identities=31% Similarity=0.256 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcC--CCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g--~~~~~V~vie~~~~ 42 (461)
|....+||||||||+||++||..|++.| .+ |+|+||.+.
T Consensus 1 m~~~~~DVvIVG~G~AGl~aAl~la~~G~~~~---V~vlEk~~~ 41 (602)
T 1kf6_A 1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAK---IALISKVYP 41 (602)
T ss_dssp CEEEECSEEEECCSHHHHHHHHHHHHHCTTCC---EEEEESSCG
T ss_pred CCcccCCEEEECCCHHHHHHHHHHHhcCCCCc---EEEEeCCCC
Confidence 4345689999999999999999999998 76 999999853
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-09 Score=104.86 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=33.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
++|||+||||||||+++|..|+++|++ |+|+|+.+.
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~~G~~---V~v~Er~~~ 38 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAKYGLK---TLMIEKRPE 38 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 579999999999999999999999998 999999864
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=114.39 Aligned_cols=121 Identities=22% Similarity=0.285 Sum_probs=72.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-------CCCccc------ccccCCCCCCCCC---
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-------ERPALS------KAYLFPEGTARLP--- 64 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~~~------~~~~~~~~~~~~~--- 64 (461)
||++.+||+|||||+||++||..|++.|.+ |+|+|+.+.... .++.+. ..++.. ......
T Consensus 23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~---V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~-~~~~~~~~l 98 (417)
T 3v76_A 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRR---VLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSG-NPHFCKSAL 98 (417)
T ss_dssp -----CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEES-STTTTHHHH
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhc-CHHHHHHHH
Confidence 666789999999999999999999999987 999999875321 011110 000000 000000
Q ss_pred ---------------Ccee-------ecCC----CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecC
Q 012545 65 ---------------GFHV-------CVGS----GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQ 116 (461)
Q Consensus 65 ---------------~~~~-------~~~~----~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d 116 (461)
+... .+.. .....+.+.+++.|++++.+++|.++..++. .|.+.++ ++.+|
T Consensus 99 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad 177 (417)
T 3v76_A 99 ARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAA 177 (417)
T ss_dssp HHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEES
T ss_pred HhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEee
Confidence 0000 0000 0011233345567999999999999976554 4556666 79999
Q ss_pred EEEEccCCCc
Q 012545 117 ILVIATGSTV 126 (461)
Q Consensus 117 ~liiAtG~~~ 126 (461)
+||+|+|..+
T Consensus 178 ~VIlAtG~~S 187 (417)
T 3v76_A 178 SLVVASGGKS 187 (417)
T ss_dssp EEEECCCCSS
T ss_pred EEEECCCCcc
Confidence 9999999876
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=109.00 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCC---cEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGT---VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~---~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+..+.+.+.+.+++.|+++++++ +|+++.. +++.+.+|++.+|+++.||.||+|+|..
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~ 220 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGAS 220 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCC
Confidence 45778888899999999999999 9999987 3566667999999899999999999964
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-09 Score=104.62 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|+++..+ ++.+..|++.+| ++.||.||+|+|...
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhH
Confidence 4567788888999999999999999999873 455656888888 899999999999764
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=109.72 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
...+.+.+.+.+++.|++|+++++|++|.. +++++..|+++||+++.||.||++++..
T Consensus 220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 220 TGALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred CcchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence 457888899999999999999999999997 5778889999999999999999988754
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-10 Score=117.81 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=81.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----cc----------------------------CHHHHH
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF----------------------------TADIAA 236 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----~~----------------------------~~~~~~ 236 (461)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .. ..++.+
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~ 170 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQL 170 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHH
Confidence 3568999999999999999999999999999988654210 00 146667
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecC-CCCEEEEEe--C-CC--cEEecCEEEEccCCCCChh
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKL--K-DG--RTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~--~-~G--~~i~aD~vi~a~G~~p~~~ 293 (461)
.+.+.+++.|++++++++|+++..++ ++....|++ . +| .++.+|.||.|+|..+...
T Consensus 171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 78888888999999999999998632 233345666 4 66 5799999999999887654
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=99.37 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=70.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCC-CCceeecCC---CCCCCCHh
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL-PGFHVCVGS---GGERLLPE 80 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~ 80 (461)
.+||+|||||++|+++|..|++.|.+ |+|+|+....... .+. .. ........+ ..+....+. .....+.+
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~---v~lie~~~~~~G~-~~~-~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~ 76 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVMM-PFL-PP-KPPFPPGSLLERAYDPKDERVWAFHARAKY 76 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTC-CSS-CC-CSCCCTTCHHHHHCCTTCCCHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCcCCc-ccC-cc-ccccchhhHHhhhccCCCCCHHHHHHHHHH
Confidence 68999999999999999999999987 9999998321100 000 00 000000000 000000000 00112334
Q ss_pred HHHHc-CcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCCCc
Q 012545 81 WYKEK-GIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 81 ~~~~~-~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~~~ 126 (461)
.+++. +++++. ++|+++..+... +.+.+++++++|.+|+|+|...
T Consensus 77 ~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s 125 (232)
T 2cul_A 77 LLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 125 (232)
T ss_dssp HHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred HHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence 45555 999885 589988765443 5667787899999999999876
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-09 Score=103.99 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=76.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc--c-------------ccccCCCCCCCCCCcee
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--S-------------KAYLFPEGTARLPGFHV 68 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~ 68 (461)
+.+||+|||||++|+++|..|++.|++ |+|+|+.+......... . ..+... ......+..
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~ 84 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNGWD---VRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG--SHTPPTYET 84 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTT--CBCCSCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhh--CCCccceEE
Confidence 358999999999999999999999987 99999986532110000 0 000000 000000000
Q ss_pred ec-----------CC--------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcc
Q 012545 69 CV-----------GS--------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 69 ~~-----------~~--------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.. +. .....+.+.+.+.|++++.+++|++++.+. .|.+.+|+++.+|.||.|+|..+.
T Consensus 85 ~~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 85 WMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp EETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred EeCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHH
Confidence 00 00 001123344556799999999999998755 888888888999999999998873
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-09 Score=105.39 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=74.6
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-ccccc---ccCCCC------CCCC---CCce
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSKA---YLFPEG------TARL---PGFH 67 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~~~~---~~~~~~------~~~~---~~~~ 67 (461)
|+++.+||+|||||++|+++|..|++.|++ |+|+|+.+...+... .+... ++.... .... .+..
T Consensus 1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~---V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 77 (421)
T 3nix_A 1 MQREKVDVLVIGAGPAGTVAASLVNKSGFK---VKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAK 77 (421)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEE
T ss_pred CCCccCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcE
Confidence 555679999999999999999999999987 999999864221110 00000 000000 0000 0000
Q ss_pred e---------ecCCC---------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE----EEcCCCc--EEecCE
Q 012545 68 V---------CVGSG---------------GERLLPEWYKEKGIELILSTEIVRADIASKT----LLSATGL--IFKYQI 117 (461)
Q Consensus 68 ~---------~~~~~---------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~----v~~~~~~--~~~~d~ 117 (461)
. ..... ....+.+.+++.|++++.+++|++++.+... +.+.+|+ ++.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~ 157 (421)
T 3nix_A 78 FVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARF 157 (421)
T ss_dssp EEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEE
T ss_pred EEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCE
Confidence 0 00000 0011223344569999999999998765432 3446776 699999
Q ss_pred EEEccCCCccccc
Q 012545 118 LVIATGSTVSITS 130 (461)
Q Consensus 118 liiAtG~~~~~~~ 130 (461)
+|.|+|....++.
T Consensus 158 vV~A~G~~s~l~~ 170 (421)
T 3nix_A 158 IIDASGYGRVIPR 170 (421)
T ss_dssp EEECCGGGCHHHH
T ss_pred EEECCCCchhhHH
Confidence 9999998774433
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=5.1e-09 Score=107.25 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=38.8
Q ss_pred HHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 238 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 238 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+....++.|++++++++|++|..+ ++.+ .|++.+|+++.||.||+|++..
T Consensus 218 ~~~l~~~lg~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~~ 267 (520)
T 1s3e_A 218 SERIMDLLGDRVKLERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPT 267 (520)
T ss_dssp HHHHHHHHGGGEESSCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGG
T ss_pred HHHHHHHcCCcEEcCCeeEEEEEC-CCeE-EEEECCCeEEEeCEEEECCCHH
Confidence 333344448899999999999873 3444 4888999999999999999853
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-09 Score=104.72 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=73.2
Q ss_pred CCC-CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--ccc---cccCCC--------CCCCCCCc
Q 012545 1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LSK---AYLFPE--------GTARLPGF 66 (461)
Q Consensus 1 Mm~-~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--~~~---~~~~~~--------~~~~~~~~ 66 (461)
||+ +.+||+|||||++|+++|..|++.|++ |+|+|+.+........ +.. ..+... .......+
T Consensus 1 ~M~~~~~dVvIVGaG~aGl~~A~~L~~~G~~---V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 77 (399)
T 2x3n_A 1 GMTDNHIDVLINGCGIGGAMLAYLLGRQGHR---VVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHE 77 (399)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECE
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCccee
Confidence 454 458999999999999999999999987 9999998653111100 000 000000 00000000
Q ss_pred e---------eecCCC---------------CCCCCHhHHHHc-CcEEEcCCeEEEEeCCCC----EEEcCCCcEEecCE
Q 012545 67 H---------VCVGSG---------------GERLLPEWYKEK-GIELILSTEIVRADIASK----TLLSATGLIFKYQI 117 (461)
Q Consensus 67 ~---------~~~~~~---------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~ 117 (461)
. ..+... ....+.+.+++. |++++.+++|++++.+.. .+.+.+|+++++|.
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~ 157 (399)
T 2x3n_A 78 LEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRV 157 (399)
T ss_dssp EEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCE
Confidence 0 000000 000112223344 899999999999976543 56777888899999
Q ss_pred EEEccCCCcc
Q 012545 118 LVIATGSTVS 127 (461)
Q Consensus 118 liiAtG~~~~ 127 (461)
||.|+|....
T Consensus 158 vV~AdG~~s~ 167 (399)
T 2x3n_A 158 VVGADGIASY 167 (399)
T ss_dssp EEECCCTTCH
T ss_pred EEECCCCChH
Confidence 9999998773
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-08 Score=102.84 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 231 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
...+.+.+.+.+++. ||+++.+ +|+++..++++.+..|++.+|+++.+|.||.|+|.....
T Consensus 193 ~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 193 AHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence 346778888888888 9999999 999998755677778999999899999999999976543
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-08 Score=99.02 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|+++.. +++.+..|++.+| ++.+|.||+|+|...
T Consensus 173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 173 HDHVAWAFARKANEMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 447788888999999999999999999987 3556667888888 799999999999765
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-09 Score=103.87 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=74.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-c--ccc---------cccCCCCCCCCCCcee
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-A--LSK---------AYLFPEGTARLPGFHV 68 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~--~~~---------~~~~~~~~~~~~~~~~ 68 (461)
|+++.+||+|||||++|+++|..|++.|++ |+|+|+.+.....+. . +.. ++..............
T Consensus 1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 77 (397)
T 2vou_A 1 MSPTTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEY 77 (397)
T ss_dssp -CCCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEE
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEE
Confidence 666789999999999999999999999987 999999865211100 0 000 0000000000000000
Q ss_pred ecC-CC---------C-C---CCCHhHHHH--cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCc
Q 012545 69 CVG-SG---------G-E---RLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 69 ~~~-~~---------~-~---~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
... .. . . ..+.+.+.+ .+++++.+++|+++..+.. .+.+.+|+++.+|.||.|+|...
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 78 VDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 153 (397)
T ss_dssp EETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred EecCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence 000 00 0 0 011222222 3889999999999976554 46677888899999999999876
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=105.31 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=71.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC-CCCCCCccccccc-----------CCCC------------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-APYERPALSKAYL-----------FPEG------------ 59 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~-~~~~~~~~~~~~~-----------~~~~------------ 59 (461)
..+||+|||||+||++||..|++.|.+ |+|+|+... .....|..+.+.. ....
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f 96 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLH---CLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQF 96 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCc---EEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence 468999999999999999999999987 999999842 1111111111000 0000
Q ss_pred ----CCCCCCcee---ecCC-CCCCCCHhHHHH-cCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCCCc
Q 012545 60 ----TARLPGFHV---CVGS-GGERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 60 ----~~~~~~~~~---~~~~-~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~~~ 126 (461)
...-+.... .... .....+.+.+++ .+++++.+ .|..+..+... |.+.+|.++.+|.+|+|||+.+
T Consensus 97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s 174 (641)
T 3cp8_A 97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL 174 (641)
T ss_dssp EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence 000000000 0000 000112233444 48998765 88887765543 5667888899999999999987
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-08 Score=101.90 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEec--------------CCCCEEEEEeCCCcEE--ecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTN--------------ADGEVKEVKLKDGRTL--EADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~--------------~~g~~~~v~~~~G~~i--~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|+++..+ +++.+..|.+.+| ++ .||.||+|+|...
T Consensus 180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s 254 (448)
T 3axb_A 180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS 254 (448)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence 4578888999999999999999999999862 2445567888888 68 9999999999653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=100.74 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++++++|+++..++ +. ..|++.+|.++.+|.||+|+|...
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~-v~V~t~~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKD-DC-WLLNFAGDQQATHSVVVLANGHQI 473 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TE-EEEEETTSCEEEESEEEECCGGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC-Ce-EEEEECCCCEEECCEEEECCCcch
Confidence 46778888899999999999999999998743 33 478888888999999999999653
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=105.27 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=35.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|++..+||+|||||++|+++|+.|+++|.+ |+|||+.+.
T Consensus 1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~---v~viEr~~~ 39 (535)
T 3ihg_A 1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVR---VLVVERRPG 39 (535)
T ss_dssp CCCCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSSS
T ss_pred CCCccCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 666789999999999999999999999987 999999865
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-11 Score=127.89 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=43.2
Q ss_pred HhcCcEEEcCCcEEEEEecCC-CCEEEEEeC---CCc--EEecCEEEEccCCCCChhhhh
Q 012545 243 ANKGIKIIKGTVAVGFTTNAD-GEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLFK 296 (461)
Q Consensus 243 ~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~~~~~~ 296 (461)
++.|+++++++.|++|..+++ +++.+|++. +|+ ++.||.||+|+|..|+..++.
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~ 330 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV 330 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence 345899999999999987433 367777774 354 688999999999999998774
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=7.9e-08 Score=94.29 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=55.3
Q ss_pred CcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 214 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 214 ~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
..+.++.+....+. +..+.+.+.+.+++.|++++.+++|++++.++++ ..|++.+| ++.+|.||+|+|...+
T Consensus 135 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 135 NYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS--VKIETANG-SYTADKLIVSMGAWNS 206 (389)
T ss_dssp TEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC--EEEEETTE-EEEEEEEEECCGGGHH
T ss_pred CceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe--EEEEeCCC-EEEeCEEEEecCccHH
Confidence 45566665554432 4678888899999999999999999999874333 45777766 7999999999997643
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=104.22 Aligned_cols=119 Identities=17% Similarity=0.197 Sum_probs=73.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--------------CC---CCcc--cc-cccCCCCC-CCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--------------YE---RPAL--SK-AYLFPEGT-ARL 63 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--------------~~---~~~~--~~-~~~~~~~~-~~~ 63 (461)
.+||||||||++|++||+.|++.|++ |+|+|+.+... +. .... .. +.+..... ..+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~k---V~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i 183 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFN---PIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCe---EEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEe
Confidence 48999999999999999999999987 99999985310 00 0000 00 00000000 000
Q ss_pred --CCce--------eecCCC------------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCC---EEEcCCCcE
Q 012545 64 --PGFH--------VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASK---TLLSATGLI 112 (461)
Q Consensus 64 --~~~~--------~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~ 112 (461)
+.+. ...+.. ....+.+.+++.|++++.+++|+++..+.. .|.+.++++
T Consensus 184 ~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~ 263 (549)
T 3nlc_A 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549)
T ss_dssp CCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCE
T ss_pred ccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCE
Confidence 0000 000000 001123344568999999999999986654 367788888
Q ss_pred EecCEEEEccCCCc
Q 012545 113 FKYQILVIATGSTV 126 (461)
Q Consensus 113 ~~~d~liiAtG~~~ 126 (461)
+.+|.||+|+|..+
T Consensus 264 i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 264 IKSRHVVLAVGHSA 277 (549)
T ss_dssp EECSCEEECCCTTC
T ss_pred EECCEEEECCCCCh
Confidence 99999999999877
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=98.98 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|+++..+++ . ..|++.+| ++.||.||+|+|...
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChhH
Confidence 467788888999999999999999999987433 3 67888888 899999999999653
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-08 Score=99.18 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
...+.+.+.+.+++.|++++++++|++|.. +++.+ | +.+|+++.||.||+|+|......++
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll 248 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI 248 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence 577889999999999999999999999987 34443 4 5678899999999999975544444
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=8e-09 Score=103.67 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=73.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-------CCCcccc-----cccCC-CCCCCC--------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-------ERPALSK-----AYLFP-EGTARL-------- 63 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~~~~-----~~~~~-~~~~~~-------- 63 (461)
.+||+|||||++|+++|..|++.|.+ |+|+|+.+...- .++.+.. .++.. .....+
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~---V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGAN---VLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF 102 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCC---EEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence 58999999999999999999999987 999999864210 0111100 00000 000000
Q ss_pred -----------CCce-------eecCC-----CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC---EEEcCCCcEEecCE
Q 012545 64 -----------PGFH-------VCVGS-----GGERLLPEWYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQI 117 (461)
Q Consensus 64 -----------~~~~-------~~~~~-----~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~ 117 (461)
.+.. ..+.. .....+.+.+++.|++++.+++|+++..+.. .|.+.+++++.+|.
T Consensus 103 ~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~ 182 (447)
T 2i0z_A 103 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH 182 (447)
T ss_dssp CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred CHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE
Confidence 0000 00000 0001123344568999999999999875443 36677777799999
Q ss_pred EEEccCCCc
Q 012545 118 LVIATGSTV 126 (461)
Q Consensus 118 liiAtG~~~ 126 (461)
||+|+|..+
T Consensus 183 VVlAtGg~s 191 (447)
T 2i0z_A 183 VVIAVGGKS 191 (447)
T ss_dssp EEECCCCSS
T ss_pred EEECCCCCc
Confidence 999999876
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=102.86 Aligned_cols=121 Identities=18% Similarity=0.313 Sum_probs=72.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-cc-c---ccccCCCCC------CCCC--------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-AL-S---KAYLFPEGT------ARLP-------- 64 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~-~---~~~~~~~~~------~~~~-------- 64 (461)
+.+||+|||||++|+++|..|++.|++ |+|+|+.+...+... .+ + ..++..... ...+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G~~---V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~ 82 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRGHR---VLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFR 82 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEE
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCC---EEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEE
Confidence 358999999999999999999999987 999999974221110 00 0 000000000 0000
Q ss_pred ------CceeecC-----CCC----------CCCCHhHHHHcCcEEEcCCeEEEEeCCCCE---EE--cCCCc--EEecC
Q 012545 65 ------GFHVCVG-----SGG----------ERLLPEWYKEKGIELILSTEIVRADIASKT---LL--SATGL--IFKYQ 116 (461)
Q Consensus 65 ------~~~~~~~-----~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~--~~~~~--~~~~d 116 (461)
.+..... ... ...+.+.+.+.|++++.+++|+++..+... |. ..+|+ ++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad 162 (512)
T 3e1t_A 83 WGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHAR 162 (512)
T ss_dssp CSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEE
T ss_pred ecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcC
Confidence 0000000 000 001223344579999999999999876653 33 34563 79999
Q ss_pred EEEEccCCCcc
Q 012545 117 ILVIATGSTVS 127 (461)
Q Consensus 117 ~liiAtG~~~~ 127 (461)
.||.|+|....
T Consensus 163 ~VI~AdG~~S~ 173 (512)
T 3e1t_A 163 FIVDASGNRTR 173 (512)
T ss_dssp EEEECCCTTCS
T ss_pred EEEECCCcchH
Confidence 99999998764
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.8e-08 Score=92.89 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=78.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC---------------------cc-c---------CHHHHHHHH
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------------RL-F---------TADIAAFYE 239 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---------------------~~-~---------~~~~~~~~~ 239 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .. . ..++.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 3799999999999999999999999999998865311 00 0 067888889
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEE-EEeCCCcEEecCEEEEccCC
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKE-VKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~-v~~~~G~~i~aD~vi~a~G~ 288 (461)
+.+++.|++++++++|+++..+ ++ ... |++++| ++.+|.||+|+|.
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~-~~-~~~~v~~~~g-~~~~d~vV~AtG~ 130 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHF-GE-RLRVVARDGR-QWLARAVISATGT 130 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEE-TT-EEEEEETTSC-EEEEEEEEECCCS
T ss_pred HHHHHcCCEEEcCCEEEEEEEC-CC-cEEEEEeCCC-EEEeCEEEECCCC
Confidence 9999999999999999999873 33 345 888888 8999999999995
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=102.36 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=76.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-cccc---cccCCCCC----CCC--CCceeecCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSK---AYLFPEGT----ARL--PGFHVCVGSG 73 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~~~---~~~~~~~~----~~~--~~~~~~~~~~ 73 (461)
..+||+|||||++|+++|..|++.|++ |+|||+.+.....+. .+.. ..+..... ..+ ..+.......
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~---V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 167 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGAR---VVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQ 167 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCe---EEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHH
Confidence 368999999999999999999999987 999999865321100 0000 00000000 000 0000000000
Q ss_pred CCCCCHhHHHHcCcEEEcCCeEEEEeCC-----CCEEEc--C-CC--cEEecCEEEEccCCCcccccccc
Q 012545 74 GERLLPEWYKEKGIELILSTEIVRADIA-----SKTLLS--A-TG--LIFKYQILVIATGSTVSITSLTS 133 (461)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~v~~i~~~-----~~~v~~--~-~~--~~~~~d~liiAtG~~~~~~~~~g 133 (461)
....+.+.+++.|++++.+++|+++..+ ...|.+ . +| .++.+|+||+|+|..+.+..+.|
T Consensus 168 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~ 237 (497)
T 2bry_A 168 LQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTI 237 (497)
T ss_dssp HHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEE
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccc
Confidence 0112334455679999999999999863 124555 3 55 46899999999999886544443
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=104.15 Aligned_cols=119 Identities=21% Similarity=0.323 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-ccc--------------------------cccc
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALS--------------------------KAYL 55 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~~--------------------------~~~~ 55 (461)
|+.+||+|||||+||+++|..|++.|++ |+|+|+.+....... .+. ..+.
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~---V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 97 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKLGHD---VTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFL 97 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEE
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcCCCC---EEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEE
Confidence 3479999999999999999999999987 999999864322110 000 0000
Q ss_pred CCCCCCCCCCceeecCC--------C---------CCCCCHhHHHHcCcEEEcCCeEEEEeCC-CC--EEEcC-CC--cE
Q 012545 56 FPEGTARLPGFHVCVGS--------G---------GERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSA-TG--LI 112 (461)
Q Consensus 56 ~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~-~~--~~ 112 (461)
+..... ........ . ....+.+.+++.|++++.+++|+++..+ +. .|.+. +| .+
T Consensus 98 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~ 174 (591)
T 3i3l_A 98 WGQDQA---PWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVT 174 (591)
T ss_dssp CSSSCC---CEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEE
T ss_pred ecCCCc---cceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEE
Confidence 000000 00000000 0 0011223445689999999999999865 33 35555 55 57
Q ss_pred EecCEEEEccCCCcc
Q 012545 113 FKYQILVIATGSTVS 127 (461)
Q Consensus 113 ~~~d~liiAtG~~~~ 127 (461)
+.+|.+|.|+|....
T Consensus 175 i~AdlVV~AdG~~S~ 189 (591)
T 3i3l_A 175 VESDFVIDAGGSGGP 189 (591)
T ss_dssp EEESEEEECCGGGCH
T ss_pred EEcCEEEECCCCcch
Confidence 999999999998763
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-08 Score=104.96 Aligned_cols=121 Identities=22% Similarity=0.243 Sum_probs=72.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-ccc-------------ccccCC-----CC-CCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-ALS-------------KAYLFP-----EG-TARL 63 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~~-~~~-------------~~~~~~-----~~-~~~~ 63 (461)
.+||+|||||++|+++|..|++.|++ |+|||+.+..... +. .+. ..+... .. ....
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~---V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 125 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI 125 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCC---EEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence 57999999999999999999999987 9999998653211 00 000 000000 00 0000
Q ss_pred C--Cceeec---CCCC---------CCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEc--CCC-cEEecCEEEEccCC
Q 012545 64 P--GFHVCV---GSGG---------ERLLPEWYKEKGIELILSTEIVRADIASKT--LLS--ATG-LIFKYQILVIATGS 124 (461)
Q Consensus 64 ~--~~~~~~---~~~~---------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~--~~~-~~~~~d~liiAtG~ 124 (461)
. .+.... .... ...+.+.+++.|++++.+++|++++.+... +.+ .+| +++++|+||.|.|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~ 205 (570)
T 3fmw_A 126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG 205 (570)
T ss_dssp CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence 0 000000 0000 011223344569999999999998776543 444 567 68999999999998
Q ss_pred Cccc
Q 012545 125 TVSI 128 (461)
Q Consensus 125 ~~~~ 128 (461)
...+
T Consensus 206 ~S~v 209 (570)
T 3fmw_A 206 RSTV 209 (570)
T ss_dssp SCHH
T ss_pred CchH
Confidence 7643
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-09 Score=106.14 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=75.6
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CCCc---ccccccCCCCC-C--------CCCCce
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ERPA---LSKAYLFPEGT-A--------RLPGFH 67 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-~~~~---~~~~~~~~~~~-~--------~~~~~~ 67 (461)
||++.+||+|||||+||+++|..|++.|++ |+|+|+.+.... ...+ ++...+..-.. . ...+..
T Consensus 2 mm~~~~dVvIVGaG~aGl~aA~~La~~G~~---V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~ 78 (453)
T 3atr_A 2 MKELKYDVLIIGGGFAGSSAAYQLSRRGLK---ILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIK 78 (453)
T ss_dssp CEEEECSEEEECCSHHHHHHHHHHSSSSCC---EEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEE
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceE
Confidence 666679999999999999999999999987 999999864210 1100 00000000000 0 000000
Q ss_pred ee---------cC---C-----CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE---EEcC---CCc--EEecCEEEEcc
Q 012545 68 VC---------VG---S-----GGERLLPEWYKEKGIELILSTEIVRADIASKT---LLSA---TGL--IFKYQILVIAT 122 (461)
Q Consensus 68 ~~---------~~---~-----~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~---~~~--~~~~d~liiAt 122 (461)
.. .. . .....+.+.+.+.|++++.+++|+++..+... |.+. +|+ ++.+|.||.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~Ad 158 (453)
T 3atr_A 79 LYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEAT 158 (453)
T ss_dssp EECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECC
T ss_pred EECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECc
Confidence 00 00 0 00011223334579999999999998766554 3343 565 78999999999
Q ss_pred CCCcccc
Q 012545 123 GSTVSIT 129 (461)
Q Consensus 123 G~~~~~~ 129 (461)
|....+.
T Consensus 159 G~~s~vr 165 (453)
T 3atr_A 159 GYSRSFR 165 (453)
T ss_dssp GGGCTTG
T ss_pred CCchhhH
Confidence 9877543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=99.39 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc-EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|+++..++++ ..|++.+|. ++.||.||+|+|...
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~--v~V~t~~G~~~i~Ad~VVlAtG~~s 469 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ--WQLTFGQSQAAKHHATVILATGHRL 469 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS--EEEEEC-CCCCEEESEEEECCGGGT
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe--EEEEeCCCcEEEECCEEEECCCcch
Confidence 4677888889999999999999999999984443 478888887 899999999999653
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-08 Score=94.64 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=71.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCCCCCC---CCC-cccccccCCCCC-----CCCCC-----cee
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAPY---ERP-ALSKAYLFPEGT-----ARLPG-----FHV 68 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~~~~~---~~~-~~~~~~~~~~~~-----~~~~~-----~~~ 68 (461)
..+||+|||||++|+++|..|++. |.+ |+|+|+.+.... ... .+.......... ..++. +..
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~---V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~ 114 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVV 114 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEE
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCe---EEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEE
Confidence 357999999999999999999997 876 999999865321 000 000000000000 00000 000
Q ss_pred e-cCCCCCCCCHhHHHH-cCcEEEcCCeEEEEeCCCCEE---EcC---------CC-----cEEecCEEEEccCCCcccc
Q 012545 69 C-VGSGGERLLPEWYKE-KGIELILSTEIVRADIASKTL---LSA---------TG-----LIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 69 ~-~~~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v---~~~---------~~-----~~~~~d~liiAtG~~~~~~ 129 (461)
. ........+.+.+.+ .|++++.+++|.++..+...+ .+. ++ .++++|.+|+|+|..+.+.
T Consensus 115 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~ 194 (284)
T 1rp0_A 115 VKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFG 194 (284)
T ss_dssp ESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTT
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHH
Confidence 0 000000011222333 699999999999997655432 321 22 5789999999999887544
Q ss_pred c
Q 012545 130 S 130 (461)
Q Consensus 130 ~ 130 (461)
.
T Consensus 195 ~ 195 (284)
T 1rp0_A 195 A 195 (284)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.4e-08 Score=95.36 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
...+.+.+.+.++++|++++++++|++|.. +++++..|+++ |+++.||.||+|+|......++
T Consensus 195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll 257 (425)
T 3ka7_A 195 CKGIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC 257 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCceeEEEE-ECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence 466888999999999999999999999987 35666667775 7789999999999964433333
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-07 Score=96.34 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=84.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc------------------------------------C----Cc-
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------------------------------------M----PR- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~------------------------------------~----~~- 228 (461)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+ + ..
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 468999999999999999999999999999987532 0 00
Q ss_pred -c-----------------------------cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEe
Q 012545 229 -L-----------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 278 (461)
Q Consensus 229 -~-----------------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~ 278 (461)
. ....+.+.+.+.+++.|++++++++|+++.. +++.+..|++.+|+++.
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~ 265 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIK 265 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEE
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEE
Confidence 0 0145666778888889999999999999987 45667789999999999
Q ss_pred cCEEEEccCCCCCh
Q 012545 279 ADIVVVGVGGRPLI 292 (461)
Q Consensus 279 aD~vi~a~G~~p~~ 292 (461)
||.||+|+|..+..
T Consensus 266 Ad~VVlA~G~~s~~ 279 (549)
T 3nlc_A 266 SRHVVLAVGHSARD 279 (549)
T ss_dssp CSCEEECCCTTCHH
T ss_pred CCEEEECCCCChhh
Confidence 99999999999864
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=8.3e-08 Score=97.88 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-c--EEecC-EEEEccCCCC
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R--TLEAD-IVVVGVGGRP 290 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~--~i~aD-~vi~a~G~~p 290 (461)
.+.+.+.+.+++.|++++++++|+++..++++++.+|...++ + ++.|| .||+|+|-..
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 788888899999999999999999999854688888876543 2 58996 9999999544
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3e-07 Score=90.57 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|+++..++ +. ..|++.+| ++.||.||+|+|...
T Consensus 152 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~-v~v~t~~g-~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 152 VRGTLAALFTLAQAAGATLRAGETVTELVPDA-DG-VSVTTDRG-TYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TE-EEEEESSC-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEcC-Ce-EEEEECCC-EEEcCEEEEcCCcCh
Confidence 34567778888889999999999999998733 33 35777666 799999999999753
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=93.54 Aligned_cols=122 Identities=13% Similarity=0.103 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--cc--c----ccccCCC----------CCC---
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL--S----KAYLFPE----------GTA--- 61 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~~--~----~~~~~~~----------~~~--- 61 (461)
++.+||+|||||++|+++|..|++.|++ |+|+|+.+....... .+ . ...+... ...
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~ 100 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGID---VSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVN 100 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCE---EEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEE
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceE
Confidence 3468999999999999999999999987 999999864321100 00 0 0000000 000
Q ss_pred --CCCCcee-ec--C----CCCC----CCCHhHHHH--cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCC
Q 012545 62 --RLPGFHV-CV--G----SGGE----RLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS 124 (461)
Q Consensus 62 --~~~~~~~-~~--~----~~~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~ 124 (461)
...+... .. . .... ..+.+.+.+ .+++++.+++|++++.+.. .+.+.+|+++.+|.||.|+|.
T Consensus 101 ~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 180 (398)
T 2xdo_A 101 IADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGG 180 (398)
T ss_dssp EECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCT
T ss_pred EECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCc
Confidence 0000000 00 0 0000 001122222 1357888999999976554 466778888999999999998
Q ss_pred Ccc
Q 012545 125 TVS 127 (461)
Q Consensus 125 ~~~ 127 (461)
...
T Consensus 181 ~S~ 183 (398)
T 2xdo_A 181 MSK 183 (398)
T ss_dssp TCS
T ss_pred chh
Confidence 773
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-07 Score=99.85 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|+++.. +++.+..|.+.+| ++.||.||+|+|...
T Consensus 150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence 557888889999999999999999999987 3455667888888 899999999999764
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=91.50 Aligned_cols=116 Identities=18% Similarity=0.303 Sum_probs=69.3
Q ss_pred CeEEEEcCChHHHHHHHHHHH---cCCCCCcEEEEeCCCCCCCC----CC------c--ccccccC--CC----------
Q 012545 6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAPYE----RP------A--LSKAYLF--PE---------- 58 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~---~g~~~~~V~vie~~~~~~~~----~~------~--~~~~~~~--~~---------- 58 (461)
+||+|||||++|+++|..|++ .|++ |+|+||++..... +. . ....++. ..
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~---V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~ 78 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLY---LAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD 78 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEE---EEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCce---EEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence 599999999999999999999 7876 9999998642210 00 0 0000000 00
Q ss_pred ------CCCCCC----------CceeecCCCCCC-CCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEE
Q 012545 59 ------GTARLP----------GFHVCVGSGGER-LLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILV 119 (461)
Q Consensus 59 ------~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~li 119 (461)
....+. ............ ....+.+..+++++++++|.+++.++. .|.+.+|+++.+|+||
T Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV 158 (342)
T 3qj4_A 79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV 158 (342)
T ss_dssp HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence 000000 000000001111 112233445899999999999987654 4566777778999999
Q ss_pred EccCC
Q 012545 120 IATGS 124 (461)
Q Consensus 120 iAtG~ 124 (461)
+|+..
T Consensus 159 ~A~p~ 163 (342)
T 3qj4_A 159 LTMPV 163 (342)
T ss_dssp ECSCH
T ss_pred ECCCH
Confidence 99984
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-08 Score=94.48 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=32.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||+|||||++|+++|++|++.|++ |+|+|+...
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G~~---V~llE~~~~ 51 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKENKN---TALFESGTM 51 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 58999999999999999999999987 999999854
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.9e-08 Score=96.78 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+.+.+.+.+.+ ++++++++|++|+.++++ ..|++.+|+++.+|.||+|++.
T Consensus 236 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~ 287 (470)
T 3i6d_A 236 TLVEEIEKQLKL--TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPH 287 (470)
T ss_dssp HHHHHHHHTCCS--EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCH
T ss_pred HHHHHHHHhcCC--CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCH
Confidence 344444443332 789999999999984444 5788999989999999999884
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.5e-08 Score=97.48 Aligned_cols=121 Identities=17% Similarity=0.231 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-cc-------------cccccCCCCCCC---CC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-AL-------------SKAYLFPEGTAR---LP 64 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~~-~~-------------~~~~~~~~~~~~---~~ 64 (461)
.+.+||+||||||+|+++|..|++.|++ |+|+|+.+..... +. .+ ...+... .... +.
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~~ 84 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGHFG 84 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEEET
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-ccccccccc
Confidence 3578999999999999999999999987 9999998653211 10 00 0000000 0000 00
Q ss_pred CceeecC--CC------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEcCCCc---EEecCEEEEccCCC
Q 012545 65 GFHVCVG--SG------------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGL---IFKYQILVIATGST 125 (461)
Q Consensus 65 ~~~~~~~--~~------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~---~~~~d~liiAtG~~ 125 (461)
+...... .. ....+.+.+.+.|++++.++++++++.+... +.+.++. ++++|+||.|.|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~ 164 (500)
T 2qa1_A 85 GLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGR 164 (500)
T ss_dssp TEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTT
T ss_pred ceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcc
Confidence 0000000 00 0011223345579999999999999765544 4444553 79999999999987
Q ss_pred cc
Q 012545 126 VS 127 (461)
Q Consensus 126 ~~ 127 (461)
..
T Consensus 165 S~ 166 (500)
T 2qa1_A 165 SS 166 (500)
T ss_dssp CH
T ss_pred hH
Confidence 63
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=89.76 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=82.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC---------------c---ccCHHHHHHHHHHHHhcCcEEEcC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------R---LFTADIAAFYEGYYANKGIKIIKG 252 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---------------~---~~~~~~~~~~~~~l~~~GV~v~~~ 252 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ....++.+.+.+.+++.|++++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 5799999999999999999999999999999764321 1 013677888888899999999999
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC---CCChh
Q 012545 253 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG---RPLIS 293 (461)
Q Consensus 253 ~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~---~p~~~ 293 (461)
++|+++....++ ...|.+.+|+ +.+|.||+|+|. .|...
T Consensus 88 ~~v~~i~~~~~~-~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~ 129 (332)
T 3lzw_A 88 QAVESVEKQADG-VFKLVTNEET-HYSKTVIITAGNGAFKPRKL 129 (332)
T ss_dssp CCEEEEEECTTS-CEEEEESSEE-EEEEEEEECCTTSCCEECCC
T ss_pred CEEEEEEECCCC-cEEEEECCCE-EEeCEEEECCCCCcCCCCCC
Confidence 999999874332 3568888885 999999999998 66543
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=9.7e-08 Score=98.80 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||||||||+||++||..|++.|.+ |+|+||.+.
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~---V~vlEk~~~ 160 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAK---VILIEKEPV 160 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 58999999999999999999999987 999999875
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.8e-07 Score=87.65 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=80.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccC--CccC--------Cc---ccCHHHHHHHHHHHHhcCcEEEcCCcEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM--------PR---LFTADIAAFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~~--------~~---~~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++. ..+. +. ....++.+.+.+.+++.|++++. .+|++
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 94 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK 94 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence 47999999999999999999999999999985 1110 11 12357788888899999999999 89999
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+..+ +....+.+.+|.++.+|.+|+|+|..|...
T Consensus 95 i~~~--~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 95 IENR--GDEFVVKTKRKGEFKADSVILGIGVKRRKL 128 (323)
T ss_dssp EEEC----CEEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred EEec--CCEEEEEECCCCEEEcCEEEECcCCCCccC
Confidence 9873 223568888888999999999999887654
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-07 Score=90.97 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=79.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc---------------------------c-------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------------------------L------------- 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~---------------------------~------------- 229 (461)
..+|+|||+|..|+.+|..|++.|.+|+++++.+.+... .
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 458999999999999999999999999999987653110 0
Q ss_pred -----------------------cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 230 -----------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 230 -----------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
...++.+.+.+.+++.||+++++++|+++..++++ ..|.+.+| ++.||.||+|+
T Consensus 107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~--~~V~~~~g-~i~ad~VIlAt 183 (417)
T 3v76_A 107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASG--FRVTTSAG-TVDAASLVVAS 183 (417)
T ss_dssp HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE--EEEEETTE-EEEESEEEECC
T ss_pred HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE--EEEEECCc-EEEeeEEEECC
Confidence 01256677888888899999999999999873333 57888888 89999999999
Q ss_pred CCCC
Q 012545 287 GGRP 290 (461)
Q Consensus 287 G~~p 290 (461)
|..+
T Consensus 184 G~~S 187 (417)
T 3v76_A 184 GGKS 187 (417)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 9876
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-07 Score=93.39 Aligned_cols=102 Identities=21% Similarity=0.147 Sum_probs=83.2
Q ss_pred CcEEEECCCHHHHHHHHHHH-HCCCcEEEEccCCccCC--------c------------cc----------------CHH
Q 012545 191 GKAVVVGGGYIGLELSAALK-INNIDVSMVYPEPWCMP--------R------------LF----------------TAD 233 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~-~~g~~Vtli~~~~~~~~--------~------------~~----------------~~~ 233 (461)
.+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+.. . .+ .++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 89999999998653311 0 01 246
Q ss_pred HHHHHHHHHHhcCc--EEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC--CCCh
Q 012545 234 IAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLI 292 (461)
Q Consensus 234 ~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~--~p~~ 292 (461)
+.+.+.+.+++.|+ .++++++|+++..++++....|++++|+++.+|.||+|+|. +|..
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~ 151 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF 151 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence 67788888899998 89999999999875555567899999999999999999994 5544
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=7.2e-08 Score=99.63 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=32.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||||||||++|++||..|++.|.+ |+||||.+.
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G~~---V~vlEk~~~ 155 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAGAN---VILVDKAPF 155 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 57999999999999999999999987 999999875
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.7e-07 Score=93.73 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=83.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------------------c----------------cCHH
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------L----------------FTAD 233 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------------~----------------~~~~ 233 (461)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... . -.++
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e 100 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE 100 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence 357999999999999999999999999999986532100 0 1246
Q ss_pred HHHHHHHHHHhcCc--EEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC--CCCCh
Q 012545 234 IAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--GRPLI 292 (461)
Q Consensus 234 ~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G--~~p~~ 292 (461)
+.+.+.+.+++.|+ +++++++|+++..+++.....|++.+|+++.+|.||+|+| .+|..
T Consensus 101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~ 163 (549)
T 4ap3_A 101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT 163 (549)
T ss_dssp HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence 77788888899998 8999999999987555556789999999999999999999 45544
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=94.68 Aligned_cols=101 Identities=23% Similarity=0.266 Sum_probs=78.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc------------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------ 228 (461)
-.|+|||+|..|+.+|..|++.|.+|+++++.+.+...
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~ 201 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 201 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 36999999999999999999999999999987643210
Q ss_pred ---------------------------------------------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCC
Q 012545 229 ---------------------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 263 (461)
Q Consensus 229 ---------------------------------------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~ 263 (461)
.....+.+.+.+.+++.||+++++++|+++..+++
T Consensus 202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 281 (566)
T 1qo8_A 202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD 281 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence 00123445666777889999999999999987433
Q ss_pred CCEEEEEeC--CCc--EEecCEEEEccCCCCC
Q 012545 264 GEVKEVKLK--DGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 264 g~~~~v~~~--~G~--~i~aD~vi~a~G~~p~ 291 (461)
+++.+|++. +|+ ++.+|.||+|+|....
T Consensus 282 g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 282 HSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp SBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred CcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 777667664 675 6899999999996543
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=7.8e-07 Score=92.01 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=78.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc------------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------ 228 (461)
..|+|||+|..|+.+|..+++.|.+|+++++.+.+...
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP 206 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 57999999999999999999999999999987643210
Q ss_pred ---------------------------------------------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCC
Q 012545 229 ---------------------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 263 (461)
Q Consensus 229 ---------------------------------------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~ 263 (461)
.....+.+.+.+.+++.||+++++++|+++..+++
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 286 (571)
T 1y0p_A 207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK 286 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence 00124455667777889999999999999987444
Q ss_pred CCEEEEEeC--CCc--EEecCEEEEccCCCC
Q 012545 264 GEVKEVKLK--DGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 264 g~~~~v~~~--~G~--~i~aD~vi~a~G~~p 290 (461)
+++.+|++. +|+ ++.+|.||+|+|...
T Consensus 287 g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 287 GTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp SCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred CeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 777767665 675 689999999999643
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-07 Score=88.61 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=79.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC----cc------------CCc----ccCHHHHHHHHHHHHhcCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WC------------MPR----LFTADIAAFYEGYYANKGIKI 249 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~----~~------------~~~----~~~~~~~~~~~~~l~~~GV~v 249 (461)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ .+. ....++.+.+.+.+++.|+++
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 101 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI 101 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence 5689999999999999999999999999999843 11 011 123578888899999999999
Q ss_pred EcCCcEEEEEecCCCCEEEEEe---CCCcEEecCEEEEccCCCCChh
Q 012545 250 IKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 250 ~~~~~v~~i~~~~~g~~~~v~~---~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+.++ ++++..+ ++. ..+.+ .++.++.+|.+|+|+|.+|...
T Consensus 102 ~~~~-v~~i~~~-~~~-~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~ 145 (338)
T 3itj_A 102 ITET-VSKVDLS-SKP-FKLWTEFNEDAEPVTTDAIILATGASAKRM 145 (338)
T ss_dssp ECSC-EEEEECS-SSS-EEEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred EEeE-EEEEEEc-CCE-EEEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence 9988 9999873 232 45666 4677899999999999876543
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-07 Score=86.93 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=79.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC------------------CcccCHHHHHHHHHHHHhcCcEEEcC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRLFTADIAAFYEGYYANKGIKIIKG 252 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~------------------~~~~~~~~~~~~~~~l~~~GV~v~~~ 252 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.....++.+.+.+.+++.+++++.+
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG 85 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence 579999999999999999999999999999876431 00112567777888888889999999
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 253 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 253 ~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
++|+++..+++ ...|.+.+|+++.+|.||+|+|..
T Consensus 86 ~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 86 ERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp CCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred CEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence 99999987332 456888888899999999999984
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.9e-07 Score=86.66 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=81.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------C--------c---ccCHHHHHHHHHHHHhcCcEEEc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P--------R---LFTADIAAFYEGYYANKGIKIIK 251 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--------~---~~~~~~~~~~~~~l~~~GV~v~~ 251 (461)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + . ....++.+.+.+.+++.|++++.
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL 93 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence 4579999999999999999999999999999876431 1 0 01267777888888999999999
Q ss_pred CCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 252 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 252 ~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+++|+++...+++ ...|++.+|+++.+|.+|+|+|..
T Consensus 94 ~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~li~AtG~~ 130 (360)
T 3ab1_A 94 NETVTKYTKLDDG-TFETRTNTGNVYRSRAVLIAAGLG 130 (360)
T ss_dssp SCCEEEEEECTTS-CEEEEETTSCEEEEEEEEECCTTC
T ss_pred CCEEEEEEECCCc-eEEEEECCCcEEEeeEEEEccCCC
Confidence 9999999874332 356888899899999999999984
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=94.83 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=73.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-cc-------------cccccCC--CCCCCCCCc
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-AL-------------SKAYLFP--EGTARLPGF 66 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~~-~~-------------~~~~~~~--~~~~~~~~~ 66 (461)
+.+||+||||||+|+++|..|++.|++ |+|+|+.+..... +. .+ ...+... .....+.+.
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 87 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGR 87 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecce
Confidence 468999999999999999999999987 9999998653211 10 00 0000000 000000000
Q ss_pred eeecC---CC-----------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCc---EEecCEEEEccCCCcc
Q 012545 67 HVCVG---SG-----------GERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGL---IFKYQILVIATGSTVS 127 (461)
Q Consensus 67 ~~~~~---~~-----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~---~~~~d~liiAtG~~~~ 127 (461)
..... .. ....+.+.+.+.|++++.++++++++.+.. ++.+.++. ++++|+||.|.|....
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 88 PVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp EEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred ecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence 00000 00 001122334557999999999999976554 34555553 7999999999998763
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=97.91 Aligned_cols=59 Identities=22% Similarity=0.152 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p 290 (461)
+..+...+.+.+++.|++++.+++|+++.. +++.+..|++.+ | .++.||.||.|+|...
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 567788888889999999999999999987 456666777654 3 4789999999999643
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-07 Score=93.80 Aligned_cols=121 Identities=14% Similarity=0.061 Sum_probs=70.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc--c-------c--cccCC--CCCCCCCCceeec
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--S-------K--AYLFP--EGTARLPGFHVCV 70 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~--~-------~--~~~~~--~~~~~~~~~~~~~ 70 (461)
+.+||+|||||++|+++|..|++.|++ |+|+|+.+......... . . +++.. ........+....
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~---V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 98 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGID---CDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRD 98 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEE
Confidence 468999999999999999999999987 99999986532110000 0 0 00000 0000000000000
Q ss_pred C-------------------CCCC----CCCHhHHHH--cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccC
Q 012545 71 G-------------------SGGE----RLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATG 123 (461)
Q Consensus 71 ~-------------------~~~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG 123 (461)
. .... ..+...+.+ ..++++.+++|++++.+.. .+.+.+|+++.+|.||.|.|
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG 178 (407)
T 3rp8_A 99 FRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADG 178 (407)
T ss_dssp TTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred CCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCC
Confidence 0 0000 011111111 1278889999999986655 45677888999999999999
Q ss_pred CCcc
Q 012545 124 STVS 127 (461)
Q Consensus 124 ~~~~ 127 (461)
....
T Consensus 179 ~~S~ 182 (407)
T 3rp8_A 179 SHSA 182 (407)
T ss_dssp TTCS
T ss_pred cChH
Confidence 8763
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=91.50 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=32.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||+|||||++|+++|++|+++|++ |+|+|+...
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~---V~vle~~~~ 36 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAGLN---VLMTDAHMP 36 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence 57999999999999999999999987 999999864
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-07 Score=92.56 Aligned_cols=101 Identities=21% Similarity=0.323 Sum_probs=78.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--cccCH---------HHHHHHHHHHHhcCcEEEcCCcEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA---------DIAAFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--~~~~~---------~~~~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
...+|+|||+|+.|+.+|..|...+.+|+++++.+.+.- ..++. ++.....+.+++.||+++++++|++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~ 87 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS 87 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence 356899999999999999999878899999999876421 11111 1112245667889999999999999
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
++. +.+ .|++++|+++.+|.+|+|||.+|...
T Consensus 88 id~--~~~--~v~~~~g~~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 88 IDP--NNK--LVTLKSGEKIKYEKLIIASGSIANKI 119 (385)
T ss_dssp EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EEC--CCC--EEEECCCCEEECCEEEEecCCCcCCC
Confidence 986 333 57889999999999999999877653
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=7.8e-07 Score=87.02 Aligned_cols=99 Identities=26% Similarity=0.294 Sum_probs=81.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 468999999999999999999999999999987654210
Q ss_pred --cc-----------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 229 --LF-----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 229 --~~-----------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.+ ...+.+.+.+.+++.|++++.+++|++++. ++ .|++.+|+++.+|.||.|.|..+...
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~vr 163 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSKVR 163 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCHHH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHHHH
Confidence 00 045567778888889999999999999986 44 57888999999999999999887653
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-08 Score=102.33 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
..++.+.+.+.+++.|++++++++|++|..++++++.+|++.+|+++.||.||++++..
T Consensus 255 ~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 255 LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp TTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 35788899999999999999999999998755788889999999999999999999987
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=9.2e-08 Score=98.25 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHH---cCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~---~g~~~~~V~vie~~~~ 42 (461)
|+++.+||+|||||++|+++|..|++ .|++ |+|||+...
T Consensus 1 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~---V~liE~~~~ 42 (538)
T 2aqj_A 1 MNKPIKNIVIVGGGTAGWMAASYLVRALQQQAN---ITLIESAAI 42 (538)
T ss_dssp -CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCE---EEEEECSSS
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHhhcCCCCE---EEEECCCCC
Confidence 65667999999999999999999999 8876 999999754
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.1e-07 Score=84.25 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=78.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc---------CCc---ccCHHHHHHHHHHHHhc-CcEEEcCCcEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---------MPR---LFTADIAAFYEGYYANK-GIKIIKGTVAVG 257 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~---------~~~---~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~ 257 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. .+. ....++.+.+.+.+++. +++++. .+|++
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 81 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVE-GRVTD 81 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEE
Confidence 47999999999999999999999999999975321 111 12246777788888877 788875 48999
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+..+++ ...+++.+|+++.+|.+|+|+|.+|...
T Consensus 82 i~~~~~--~~~v~~~~g~~~~~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 82 AKGSFG--EFIVEIDGGRRETAGRLILAMGVTDELP 115 (297)
T ss_dssp EEEETT--EEEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred EEEcCC--eEEEEECCCCEEEcCEEEECCCCCCCCC
Confidence 987332 3578889998999999999999887653
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.5e-07 Score=84.04 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=77.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCc-----------cCCc----ccCHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 192 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-----------CMPR----LFTADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~-----------~~~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
+|+|||+|+.|+.+|..|++.|. +|+++++... ..+. ....++.+.+.+.+++.|++++. .++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v 81 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV 81 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence 68999999999999999999999 9999998521 0111 11256777888888999999998 789
Q ss_pred EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+++..++ ....+.+.+|+++.+|.+|+|+|.+|..
T Consensus 82 ~~i~~~~--~~~~v~~~~g~~~~~~~vv~AtG~~~~~ 116 (311)
T 2q0l_A 82 QRVSKKD--SHFVILAEDGKTFEAKSVIIATGGSPKR 116 (311)
T ss_dssp EEEEEET--TEEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEEEcC--CEEEEEEcCCCEEECCEEEECCCCCCCC
Confidence 9998632 2346778888899999999999977654
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9.3e-07 Score=88.93 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=90.2
Q ss_pred CcEEEECCCHHHHHHHHHHHH---CCCc---EEEEccCCccCCc------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKI---NNID---VSMVYPEPWCMPR------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~---~g~~---Vtli~~~~~~~~~------------------------------------ 228 (461)
++|+|||+|+.|+.+|..|++ .|.+ |+++++.+.+...
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 579999999999999999999 9999 9999987542100
Q ss_pred --------------c-cCHHHHHHHHHHHHhcCcE--EEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEcc
Q 012545 229 --------------L-FTADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGV 286 (461)
Q Consensus 229 --------------~-~~~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~ 286 (461)
. -..++.+.+.+.+++.|++ ++++++|+++...+++....|++.+ | .++.+|.||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 0 0145667778888888998 9999999999874443234566654 4 578999999999
Q ss_pred C--CCCChhhhhcccccCCCcEEeC-CCCCC---CCCCEEEeCc
Q 012545 287 G--GRPLISLFKGQVAENKGGIETD-DFFKT---SADDVYAVGD 324 (461)
Q Consensus 287 G--~~p~~~~~~~~~~~~~g~i~vd-~~~~t---~~~~vya~GD 324 (461)
| ..|+...++ ++..-.|.+... ++... ..+.|-++|.
T Consensus 163 G~~s~p~~p~ip-G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~ 205 (464)
T 2xve_A 163 GHFSTPYVPEFE-GFEKFGGRILHAHDFRDALEFKDKTVLLVGS 205 (464)
T ss_dssp CSSSSBCCCCCB-TTTTCCSEEEEGGGCCCGGGGTTSEEEEECC
T ss_pred CCCCCCccCCCC-CcccCCceEEehhhhCCHhHcCCCEEEEEcC
Confidence 9 677654322 122112333322 22221 3456777774
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=93.35 Aligned_cols=100 Identities=21% Similarity=0.326 Sum_probs=78.9
Q ss_pred CcEEEECCCHHHHHHHHHHHH---CCCcEEEEccCCccCCc----------ccCHHHHHHHHHHHHhcCcEEEcCCcEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~---~g~~Vtli~~~~~~~~~----------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+... ....++...+.+.+++.||+++. .++++
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~ 83 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ 83 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence 689999999999999999999 79999999998864211 01223334456788889999985 68999
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
++. ++. .|++++|+++.+|.+|+|+|.+|+...+
T Consensus 84 id~--~~~--~V~~~~g~~i~~d~lviAtG~~~~~~~i 117 (437)
T 3sx6_A 84 IDA--EAQ--NITLADGNTVHYDYLMIATGPKLAFENV 117 (437)
T ss_dssp EET--TTT--EEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred EEc--CCC--EEEECCCCEEECCEEEECCCCCcCcccC
Confidence 976 332 5788999899999999999999876543
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.49 E-value=6.8e-07 Score=84.67 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=79.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCC--ccC-----------CcccCHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~--~~~-----------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
+|+|||+|+.|+.+|..|++.|.+|+++++.. .+. +....+++.+.+.+.+++.|++++.+++|+.+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 82 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence 68999999999999999999999999997531 110 00113467788888899999999999999999
Q ss_pred EecCC-CCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 259 TTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 259 ~~~~~-g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
..+.+ +....+.+++|+++.+|.+|+|+|.+|..
T Consensus 83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~ 117 (310)
T 1fl2_A 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN 117 (310)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 75322 22457888899899999999999987654
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.49 E-value=2.9e-07 Score=90.54 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=72.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCC-ccccc---ccCCCC--------CCCCCCceee
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERP-ALSKA---YLFPEG--------TARLPGFHVC 69 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~-~~~~~---~~~~~~--------~~~~~~~~~~ 69 (461)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.. ...+. .+... .+.... ......+...
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 78 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA 78 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence 57999999999999999999999987 9999998631 00000 00000 000000 0000000000
Q ss_pred -------c-------CCC--------CCCCCHhHHHHcCcEEEcCCeEEEEeCCC---CEEEc-CCCc--EEecCEEEEc
Q 012545 70 -------V-------GSG--------GERLLPEWYKEKGIELILSTEIVRADIAS---KTLLS-ATGL--IFKYQILVIA 121 (461)
Q Consensus 70 -------~-------~~~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~---~~v~~-~~~~--~~~~d~liiA 121 (461)
. +.. ....+.+.+.+.+++++.+++|+++..+. -.|.+ .+|+ ++.+|.||.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A 158 (394)
T 1k0i_A 79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC 158 (394)
T ss_dssp ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence 0 000 00112233345699999999999997642 35666 6776 6999999999
Q ss_pred cCCCccc
Q 012545 122 TGSTVSI 128 (461)
Q Consensus 122 tG~~~~~ 128 (461)
+|....+
T Consensus 159 dG~~S~v 165 (394)
T 1k0i_A 159 DGFHGIS 165 (394)
T ss_dssp CCTTCST
T ss_pred CCCCcHH
Confidence 9987743
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.2e-07 Score=91.93 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=81.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC----------------------------------c--ccCHHH
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------R--LFTADI 234 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----------------------------------~--~~~~~~ 234 (461)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .-.+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 4799999999999999999999999999999754210 0 013567
Q ss_pred HHHHHHHHHhcCc--EEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC--CCCCh
Q 012545 235 AAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--GRPLI 292 (461)
Q Consensus 235 ~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G--~~p~~ 292 (461)
.+.+.+.+++.|+ .++++++|++++.++++....|++++|+++.+|.||+|+| .+|+.
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~ 151 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM 151 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence 7788888888888 7899999999987555556688999999999999999999 55554
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=9.8e-07 Score=86.96 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=79.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--------------c------c---------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------R------L--------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--------------~------~--------------------- 229 (461)
..|+|||+|+.|+.+|..+++.|.+|+++++.+.+.. . .
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 4699999999999999999999999999998764310 0 0
Q ss_pred ----------------------cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC---CCCEEEEEeCCCcEEecCEEEE
Q 012545 230 ----------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA---DGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 230 ----------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~---~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
...++.+.+.+.+++.||+++++++|+++..++ ++. ..|++.+| ++.||.||+
T Consensus 85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl 162 (401)
T 2gqf_A 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV 162 (401)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence 134555677888889999999999999998631 233 46777777 899999999
Q ss_pred ccCCCCC
Q 012545 285 GVGGRPL 291 (461)
Q Consensus 285 a~G~~p~ 291 (461)
|+|..+.
T Consensus 163 AtG~~s~ 169 (401)
T 2gqf_A 163 ATGGLSM 169 (401)
T ss_dssp CCCCSSC
T ss_pred CCCCccC
Confidence 9998874
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=87.47 Aligned_cols=100 Identities=24% Similarity=0.347 Sum_probs=80.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------------------c----------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------------------R---------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------------------~---------------------- 228 (461)
...|+|||+|..|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE 105 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence 35799999999999999999999999999998763210 0
Q ss_pred --------------------cc-----CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 229 --------------------LF-----TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 229 --------------------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
.+ ...+.+.+.+.+++.||+++++++|+++.. +++.+..|++.+|+++.||.||
T Consensus 106 ~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VV 184 (447)
T 2i0z_A 106 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVV 184 (447)
T ss_dssp HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEE
T ss_pred HHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEE
Confidence 00 134455677778889999999999999986 3566678899999889999999
Q ss_pred EccCCCC
Q 012545 284 VGVGGRP 290 (461)
Q Consensus 284 ~a~G~~p 290 (461)
+|+|..+
T Consensus 185 lAtGg~s 191 (447)
T 2i0z_A 185 IAVGGKS 191 (447)
T ss_dssp ECCCCSS
T ss_pred ECCCCCc
Confidence 9999876
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.8e-08 Score=95.57 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=32.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~ 42 (461)
.+||+|||||++|+++|++|+++ |++ |+|+|+...
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~---V~vlE~~~~ 72 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRS---LLLVEEGGL 72 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCe---EEEEeCCCC
Confidence 48999999999999999999999 887 999999753
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.5e-07 Score=94.74 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc------CCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ------GVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~------g~~~~~V~vie~~~~~ 43 (461)
.+||+|||||+||+++|..|++. |++ |+|+||.+..
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~---V~vlEk~~~~ 76 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLR---VCLVEKAAHI 76 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCC---EEEECSSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCc---EEEEeCCCCC
Confidence 48999999999999999999998 887 9999998653
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.5e-07 Score=91.20 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=31.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
++|+||||||+|+++|..|+++|++ |+|+|+.+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~---v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIK---VTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence 5899999999999999999999987 999999864
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-06 Score=83.16 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=76.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCC------c------cCC-c---------------------------c
Q 012545 191 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEP------W------CMP-R---------------------------L 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~------~------~~~-~---------------------------~ 229 (461)
.+|+|||+|+.|+.+|..|++.|. +|+++++.+ . ++. . .
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH 84 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence 479999999999999999999999 999999875 0 000 0 0
Q ss_pred -cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 230 -FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 230 -~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
....+.+.+.+.+++.|++++.+++|+++..++++ ..|.+.+| ++.+|.||+|+|..+.
T Consensus 85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence 01345666777888899999999999999873333 45777777 6999999999998654
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=6.3e-07 Score=91.81 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=39.6
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCcce-eeccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.+|.+.||++|++||+|+|+. ... |..+ .-.+...|...|+.|++++...
T Consensus 353 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~gnsl~~~~vfG~~Ag~~aa~~ 409 (540)
T 1chu_A 353 TCGGVMVDDHGRTDVEGLYAIGEVSYTGLH---GANRMASNSLLECLVYGWSAAEDITRR 409 (540)
T ss_dssp ESCEEECCTTCBCSSBTEEECGGGEECSSS---TTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcEEECCCCCCccCCEEecccccccccc---CCCcCcchhHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999983 221 1110 0124556777789898888754
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-06 Score=86.41 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=81.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC--ccC-----------CcccCHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~--~~~-----------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
...+|+|||+|+.|+.+|..|++.|.+|+++++.. .+. +....+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v 290 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA 290 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 34579999999999999999999999999997531 111 01124577888888999999999999999
Q ss_pred EEEEecCC-CCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 256 VGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 256 ~~i~~~~~-g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+++..+.+ +....|++.+|+++.+|.||+|+|.+|..
T Consensus 291 ~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~ 328 (521)
T 1hyu_A 291 SKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328 (521)
T ss_dssp EEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 99975222 23457888999999999999999977654
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-07 Score=92.40 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
+..+.+.+.+.+++.||+++.++.|+++..++++++.+|.. .+|+ ++.++.||+|+|..
T Consensus 142 g~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~ 205 (588)
T 2wdq_A 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA 205 (588)
T ss_dssp HHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence 45677788888888999999999999998743677777764 4665 58999999999963
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.2e-07 Score=93.03 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=34.7
Q ss_pred HHH-cCcEEEcCCeEEEEeCCC--C--EEEcCCCcEEecCEEEEccCCCcc
Q 012545 82 YKE-KGIELILSTEIVRADIAS--K--TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 82 ~~~-~~v~~~~~~~v~~i~~~~--~--~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
+.+ .|++++.+ +|++++.+. . .|.+.+|.++.+|.||.|+|....
T Consensus 185 a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 185 CTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 345 79999999 699987543 2 456667677999999999998763
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=83.36 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=78.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-----------cCCc----ccCHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPR----LFTADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-----------~~~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+. ....++.+.+.+.+++.|++++. .++
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 87 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV 87 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence 4799999999999999999999999999998721 0111 01346777888888999999987 589
Q ss_pred EEEEecC-CCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 256 VGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 256 ~~i~~~~-~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+++.... ++....+.+.+|+++.+|.+|+|+|.+|..
T Consensus 88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~ 125 (325)
T 2q7v_A 88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK 125 (325)
T ss_dssp EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 9998731 221135667788899999999999987754
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-07 Score=86.46 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=33.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
++||+|||||||||+||..|+++|++ |+|+||.+.
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~---V~v~Ek~~~ 36 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQ---VHLFDKSRG 36 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 58999999999999999999999998 999999875
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=81.91 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=73.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc----------cC--CcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEE
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CM--PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 259 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~----------~~--~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~ 259 (461)
.|+|||+|+.|+.+|..+++.|.+|+++++... +. +...++++.+...+.+.+.+...+....+..+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT 87 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence 589999999999999999999999999987532 10 111234566666666666655545555666666
Q ss_pred ecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 260 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 260 ~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
..+++ ...+.+.+|+++.+|.||+|||.+|...
T Consensus 88 ~~~~~-~~~v~~~~g~~~~a~~liiATGs~p~~p 120 (304)
T 4fk1_A 88 KQSTG-LFEIVTKDHTKYLAERVLLATGMQEEFP 120 (304)
T ss_dssp ECTTS-CEEEEETTCCEEEEEEEEECCCCEEECC
T ss_pred ecCCC-cEEEEECCCCEEEeCEEEEccCCccccc
Confidence 53333 3578899999999999999999877543
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=8.3e-07 Score=85.01 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=77.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc----CCcc------------CCc----ccCHHHHHHHHHHHHhcCcEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYP----EPWC------------MPR----LFTADIAAFYEGYYANKGIKII 250 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~----~~~~------------~~~----~~~~~~~~~~~~~l~~~GV~v~ 250 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++ ...+ .+. ....++.+.+.+.+++.|++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 88 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 88 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4799999999999999999999999999998 2211 111 1234677788888899999999
Q ss_pred cCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 251 ~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.++ ++++....+. ..|++ +|.++.+|.+|+|+|.+|...
T Consensus 89 ~~~-v~~i~~~~~~--~~v~~-~~~~~~~~~vv~A~G~~~~~~ 127 (333)
T 1vdc_A 89 TET-VTKVDFSSKP--FKLFT-DSKAILADAVILAIGAVAKRL 127 (333)
T ss_dssp CCC-CCEEECSSSS--EEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred EeE-EEEEEEcCCE--EEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence 986 8888763222 45666 778999999999999877543
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.6e-07 Score=90.39 Aligned_cols=98 Identities=13% Similarity=0.234 Sum_probs=74.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|++|+.+|..|++.|.+ |+++|+.+... +... .. ....+.+.+++
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~---V~lv~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 220 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAE---VIVLEYMDRIL---PTMD---------LE-----------VSRAAERVFKK 220 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCCccc---cccC---------HH-----------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999986421 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++++.+++.+.+. +.+.+++++++|.+|+|+|.+|..
T Consensus 221 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~ 266 (455)
T 2yqu_A 221 QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT 266 (455)
T ss_dssp HTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred CCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence 89999999999999866544 445578889999999999999854
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.2e-07 Score=90.85 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|| +.+||+|||||++|+++|..|++.|+++ |+|+|+.+.
T Consensus 1 M~-~~~dVvIVGaG~aGl~~A~~L~~~G~~~--v~v~E~~~~ 39 (410)
T 3c96_A 1 MS-EPIDILIAGAGIGGLSCALALHQAGIGK--VTLLESSSE 39 (410)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCSE--EEEEESSSS
T ss_pred CC-CCCeEEEECCCHHHHHHHHHHHhCCCCe--EEEEECCCC
Confidence 54 4789999999999999999999987642 999999865
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-07 Score=94.33 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=72.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCcccCH----------HHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTA----------DIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~~~~~----------~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
|+|+|||+|+.|+.+|..|++.+ .+||+|++.++..-...-+ ++...+.+.+++.||+++.+ +|++|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I 81 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI 81 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence 68999999999999999999865 7899999988643110111 11112345567789999866 79999
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+. +.+ .|++++|+++++|.+|+|+|.++.
T Consensus 82 d~--~~~--~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 82 DP--DAN--TVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp ET--TTT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred EC--CCC--EEEECCCCEEECCEEEEeCCCCcc
Confidence 86 443 588999999999999999997653
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.9e-07 Score=93.94 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=35.0
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|+...+||||||||.||++||++|++.|.+ |+|+||.+.
T Consensus 1 M~~~~~DVvVIGgG~AGL~AAl~aae~G~~---V~vlEK~~~ 39 (660)
T 2bs2_A 1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLS---TIVLSLIPV 39 (660)
T ss_dssp CCEEECSEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCG
T ss_pred CCcccccEEEECchHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 555578999999999999999999999987 999999864
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-06 Score=84.23 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=79.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC----------------------------------------c--
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------R-- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----------------------------------------~-- 228 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 4799999999999999999999999999998754300 0
Q ss_pred -----------------ccCHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEE-EEEeCCCcEEecCEEEEccCCC
Q 012545 229 -----------------LFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVK-EVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 229 -----------------~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~-~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.....+.+.+.+.+++. |++++.+++|++++.++++ +. .|++.+|+++.+|.||.|.|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g~~~~ad~vV~AdG~~ 165 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-AIDQVRLNDGRVLRPRVVVGADGIA 165 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-CEEEEEETTSCEEEEEEEEECCCTT
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-eEEEEEECCCCEEECCEEEECCCCC
Confidence 00124556677777777 9999999999999874443 32 6888999899999999999987
Q ss_pred CCh
Q 012545 290 PLI 292 (461)
Q Consensus 290 p~~ 292 (461)
...
T Consensus 166 s~v 168 (399)
T 2x3n_A 166 SYV 168 (399)
T ss_dssp CHH
T ss_pred hHH
Confidence 754
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6e-07 Score=91.32 Aligned_cols=36 Identities=17% Similarity=0.476 Sum_probs=32.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+.+||+|||||++|+++|+.|+++|++ |+|+|+++.
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~~G~~---V~llE~~~~ 37 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAGRGLS---VLMLEAQDL 37 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCC---EEEEECCCC
Confidence 468999999999999999999999987 999999863
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-06 Score=86.51 Aligned_cols=102 Identities=21% Similarity=0.127 Sum_probs=76.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccCCccCCcc--------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPRL-------------------------------------- 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~~-------------------------------------- 229 (461)
..+|+|||+|+.|+.+|..|++.|. +|+++++.+.+...+
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 85 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence 5789999999999999999999999 999999875321000
Q ss_pred ---------------------------cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---Cc---E
Q 012545 230 ---------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR---T 276 (461)
Q Consensus 230 ---------------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~---~ 276 (461)
....+.+.+.+.+++.++.++++++|++++..+ + ...|++.+ |+ +
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~-~-~~~V~~~~~~~G~~~~~ 163 (447)
T 2gv8_A 86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD-G-SWVVTYKGTKAGSPISK 163 (447)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET-T-EEEEEEEESSTTCCEEE
T ss_pred hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC-C-eEEEEEeecCCCCeeEE
Confidence 012455666777777788899999999998732 2 24566654 76 7
Q ss_pred EecCEEEEccCC--CCChh
Q 012545 277 LEADIVVVGVGG--RPLIS 293 (461)
Q Consensus 277 i~aD~vi~a~G~--~p~~~ 293 (461)
+.+|.||+|+|. .|+..
T Consensus 164 ~~~d~VVvAtG~~s~p~~p 182 (447)
T 2gv8_A 164 DIFDAVSICNGHYEVPYIP 182 (447)
T ss_dssp EEESEEEECCCSSSSBCBC
T ss_pred EEeCEEEECCCCCCCCCCC
Confidence 999999999998 66543
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=9.8e-07 Score=91.17 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
.+||+|||+|++|+++|..|++.|.+ |+|+|+.+..
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~---v~~~e~~~~~ 161 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAK---VILLEKEPIP 161 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCC---EEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCC
Confidence 57999999999999999999999987 9999998753
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.34 E-value=7e-07 Score=85.15 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~ 42 (461)
.+||+|||||++|+++|..|+++ |++ |+|+|+.+.
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~---V~LiEk~~~ 115 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLR---ITIVEAGVA 115 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSC---EEEEESSSS
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCE---EEEEeCCCc
Confidence 58999999999999999999997 876 999999865
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=9.6e-07 Score=87.33 Aligned_cols=96 Identities=17% Similarity=0.299 Sum_probs=75.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||+|+.|+.+|..|++.|.+ |+++++.+... .+ . ++. .......+.+++
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-~~------~--------~~~-------~~~~~l~~~l~~ 199 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLM-SR------A--------APA-------TLADFVARYHAA 199 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-TT------T--------SCH-------HHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCE---EEEEEeCCccc-cc------c--------cCH-------HHHHHHHHHHHH
Confidence 57999999999999999999999876 99999986411 00 0 000 001234566788
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.+++ ++ .+.+.+|+++++|.+|+|+|.+|.
T Consensus 200 ~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~ 240 (408)
T 2gqw_A 200 QGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAN 240 (408)
T ss_dssp TTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEEC
T ss_pred cCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCcc
Confidence 999999999999998 44 788888888999999999999884
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=87.71 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
...+.+.+.+.+++.|++++.+ +|+++..++++.+..|++.+|+++.+|.||.|.|.....
T Consensus 172 ~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 172 ADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 3456777788888899999999 999998755677778999999899999999999976543
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=85.26 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=80.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--------Cc----------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PR---------------------------------- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------~~---------------------------------- 228 (461)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... +.
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA 85 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence 479999999999999999999999999999875210 00
Q ss_pred -----------------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc--EEecCEEEEccCCC
Q 012545 229 -----------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 229 -----------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~--~i~aD~vi~a~G~~ 289 (461)
.-...+.+.+.+.+++.|++++.+++|+++..++++....+.+.+|+ ++.+|.||.|+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~ 165 (421)
T 3nix_A 86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG 165 (421)
T ss_dssp EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence 00124456677777888999999999999987555555677788897 79999999999987
Q ss_pred CC
Q 012545 290 PL 291 (461)
Q Consensus 290 p~ 291 (461)
..
T Consensus 166 s~ 167 (421)
T 3nix_A 166 RV 167 (421)
T ss_dssp CH
T ss_pred hh
Confidence 63
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.5e-06 Score=81.08 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=75.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-----------cCCc----ccCHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPR----LFTADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-----------~~~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+. ....++.+.+.+.+++.|++++.++ +
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 84 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I 84 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence 4799999999999999999999999999986420 0111 1235777788888999999999886 8
Q ss_pred EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+.+... ++. ..+ +.+|.++.+|.+|+|+|.+|..
T Consensus 85 ~~i~~~-~~~-~~v-~~~~~~~~~~~lv~AtG~~~~~ 118 (320)
T 1trb_A 85 NKVDLQ-NRP-FRL-NGDNGEYTCDALIIATGASARY 118 (320)
T ss_dssp EEEECS-SSS-EEE-EESSCEEEEEEEEECCCEEECC
T ss_pred eEEEec-CCE-EEE-EeCCCEEEcCEEEECCCCCcCC
Confidence 888763 232 344 6678899999999999987654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-06 Score=80.20 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=75.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-----------cCCc---ccCHHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPR---LFTADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-----------~~~~---~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+. ....++.+.+.+.+++.|++++. .+++
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~ 95 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR 95 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence 5799999999999999999999999999998421 0111 11356777788888999999998 6899
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
++....+ ...|.+ ++.++.+|.+|+|+|..|..
T Consensus 96 ~i~~~~~--~~~v~~-~~~~~~~~~li~AtG~~~~~ 128 (319)
T 3cty_A 96 SIKKTQG--GFDIET-NDDTYHAKYVIITTGTTHKH 128 (319)
T ss_dssp EEEEETT--EEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred EEEEeCC--EEEEEE-CCCEEEeCEEEECCCCCccc
Confidence 9886222 234666 56689999999999987654
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.5e-07 Score=89.70 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=75.2
Q ss_pred CcEEEECCCHHHHHHHHHHHH---CCCcEEEEccCCccCCc----------ccCHHHHHHHHHHHHhcCcEEEcCCcEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~---~g~~Vtli~~~~~~~~~----------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+... ....++...+.+.+++.|++++.+ +|++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 479999999999999999999 89999999988754211 012233445667778889999987 8999
Q ss_pred EEecCCCCEEEEEeCCCc----EEecCEEEEccCCCCChh
Q 012545 258 FTTNADGEVKEVKLKDGR----TLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~----~i~aD~vi~a~G~~p~~~ 293 (461)
++. ++. .|++.+++ ++.+|.+|+|+|.+|+..
T Consensus 81 i~~--~~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 81 IDA--KSS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp EET--TTT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred EeC--CCC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence 876 333 35566664 399999999999988765
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=5.3e-07 Score=87.86 Aligned_cols=99 Identities=22% Similarity=0.320 Sum_probs=73.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--ccc--------C-HHHHHHHHHHHHhcCcEEEcCCcEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLF--------T-ADIAAFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--~~~--------~-~~~~~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
.+.+++|||+|+.|+.+|..|++.| +|+++++.+.... ..+ + .++.....+.+++.||+++.+++|+.
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~ 85 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL 85 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence 4789999999999999999999999 9999998875321 001 1 11112234667788999999999999
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
++. +.. .|+ .+|+++.+|.+|+|||.+|...
T Consensus 86 id~--~~~--~V~-~~g~~~~~d~lViATGs~p~~p 116 (367)
T 1xhc_A 86 IDR--GRK--VVI-TEKGEVPYDTLVLATGARAREP 116 (367)
T ss_dssp EET--TTT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred EEC--CCC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence 976 333 355 6778999999999999887654
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=86.54 Aligned_cols=101 Identities=27% Similarity=0.438 Sum_probs=76.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccCCccCC------c-cc-----CHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP------R-LF-----TADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~------~-~~-----~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+.. . ++ ..++.....+.+++.||+++.+++|
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999997 7999998764210 0 00 0011111245677889999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh
Q 012545 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~ 294 (461)
+.+.. ++. .|.+.+|+++.+|.+|+|+|.+|+...
T Consensus 84 ~~i~~--~~~--~v~~~~g~~~~~d~lviAtG~~p~~~~ 118 (431)
T 1q1r_A 84 TAINR--DRQ--QVILSDGRALDYDRLVLATGGRPRPLP 118 (431)
T ss_dssp EEEET--TTT--EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred EEEEC--CCC--EEEECCCCEEECCEEEEcCCCCccCCC
Confidence 99986 332 577888989999999999998886543
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-06 Score=83.29 Aligned_cols=101 Identities=20% Similarity=0.333 Sum_probs=75.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----ccCHHHHH----------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAA---------------------------- 236 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~~~~~~~---------------------------- 236 (461)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999987653111 01222211
Q ss_pred ---------------HHHHHHHh--cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 237 ---------------FYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 237 ---------------~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
.+.+.|.+ .|++++++++|++++.++++ ..|++.+|+++.+|.||.|.|.....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~v 155 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVV 155 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE--EEEEECCCCEEECCEEEECCCcchhH
Confidence 12222222 38899999999999874443 46888999999999999999987654
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=9.9e-07 Score=86.48 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=74.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... .+ . .+. .....+.+.+++
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~~-~~------~--------~~~-------~~~~~l~~~l~~ 199 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQ---LDVVAPCEQVM-PG------L--------LHP-------AAAKAVQAGLEG 199 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-TT------T--------SCH-------HHHHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCcchh-hc------c--------cCH-------HHHHHHHHHHHH
Confidence 57899999999999999999999876 99999985411 00 0 000 001234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.+++.+.. .+.+.+|+++++|.+|+|+|.+|.
T Consensus 200 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~ 244 (384)
T 2v3a_A 200 LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR 244 (384)
T ss_dssp TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence 8999999999999876543 466778888999999999999884
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=84.56 Aligned_cols=101 Identities=25% Similarity=0.348 Sum_probs=74.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCcccCHHHH---------HHHHHHHHhcCcEEEcCCcEEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTADIA---------AFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
+|+|+|||+|+.|+.+|..|++.+ .+|++|++.+..........+. ..-.+.+.+.||+++.+ +|++|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence 689999999999999999998865 5899999887532211111111 01124456789999865 78899
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
+. +.+ .+.+.+|+++.+|.+|+|+|.+++....
T Consensus 81 d~--~~~--~v~~~~g~~i~yd~LviAtG~~~~~~~i 113 (401)
T 3vrd_B 81 DP--DKK--LVKTAGGAEFAYDRCVVAPGIDLLYDKI 113 (401)
T ss_dssp ET--TTT--EEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred Ec--cCc--EEEecccceeecceeeeccCCccccCCc
Confidence 76 333 5788999999999999999988876543
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=86.47 Aligned_cols=97 Identities=16% Similarity=0.351 Sum_probs=74.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--cEEEEccCCccCCc-------c-----cCHHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPR-------L-----FTADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~-------~-----~~~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
++|+|||+|+.|+.+|..|++.|. +|+++++.+...-. + ...++.....+.+++.|++++. .+++
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~ 80 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV 80 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence 689999999999999999999998 89999987632110 0 0111222345667788999999 9999
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+++. +.+ .+.+.+|+++.+|.+|+|+|.+|..
T Consensus 81 ~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~ 112 (404)
T 3fg2_P 81 SIDR--EGR--KLLLASGTAIEYGHLVLATGARNRM 112 (404)
T ss_dssp EEET--TTT--EEEESSSCEEECSEEEECCCEEECC
T ss_pred EEEC--CCC--EEEECCCCEEECCEEEEeeCCCccC
Confidence 9986 333 5788899999999999999987654
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-06 Score=88.08 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++++|||+|++|+.+|..|++.|.+ |+++|+.+... . . .+ . . .....+.+.++
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-~-----~-~~-~---~-----------~~~~~l~~~l~ 202 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRPL-G-----V-YL-D---K-----------EFTDVLTEEME 202 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT-T-----T-TC-C---H-----------HHHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCcccc-c-----c-cC-C---H-----------HHHHHHHHHHH
Confidence 457999999999999999999999876 99999986421 0 0 00 0 0 00123456677
Q ss_pred HcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCcccc
Q 012545 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~ 129 (461)
+.|++++.++.+.+++.+++ .+.+ ++.++++|.+|+|+|.+|..+
T Consensus 203 ~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~ 249 (447)
T 1nhp_A 203 ANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTA 249 (447)
T ss_dssp TTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCG
T ss_pred hCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChH
Confidence 88999999999999987643 2555 456799999999999988543
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-06 Score=81.66 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=77.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc---c--------CCc----ccCHHHHHHHHHHHHhcCcEEEcCCc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTV 254 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~GV~v~~~~~ 254 (461)
..+|+|||+|+.|+.+|..|++.|.+|+++++... + .+. ....++.+.+.+.+++.|++++.++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~- 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED- 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence 45799999999999999999999999999985311 0 111 1135677788888889999999986
Q ss_pred EEEEEecCCCCEEEE-EeCCCcEEecCEEEEccCCCCChh
Q 012545 255 AVGFTTNADGEVKEV-KLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 255 v~~i~~~~~g~~~~v-~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+++++. .+. ..| .+.+|+++.+|.+|+|+|.+|...
T Consensus 93 v~~i~~-~~~--~~v~~~~~g~~~~~d~lviAtG~~~~~~ 129 (335)
T 2a87_A 93 VESVSL-HGP--LKSVVTADGQTHRARAVILAMGAAARYL 129 (335)
T ss_dssp EEEEEC-SSS--SEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EEEEEe-CCc--EEEEEeCCCCEEEeCEEEECCCCCccCC
Confidence 888875 222 245 678888999999999999876543
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.2e-06 Score=83.57 Aligned_cols=99 Identities=21% Similarity=0.407 Sum_probs=75.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCc--EEEEccCCccCCc--ccCHHHH---------HHHHHHHHhcCcEEEcCCcEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNID--VSMVYPEPWCMPR--LFTADIA---------AFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~--Vtli~~~~~~~~~--~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
++|+|||+|+.|+.+|..|++.|.+ |+++++.+...-. .+..... ....+.+++.|++++.+++++.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 82 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA 82 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence 4899999999999999999999987 9999988753211 0111111 1123456788999999999999
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
++. +.+ .|.+.+|+++.+|.+|+|+|.+|...
T Consensus 83 id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~~ 114 (410)
T 3ef6_A 83 LDV--QTR--TISLDDGTTLSADAIVIATGSRARTM 114 (410)
T ss_dssp EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EEC--CCC--EEEECCCCEEECCEEEEccCCcccCC
Confidence 986 332 57888999999999999999876543
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.27 E-value=8.2e-07 Score=92.17 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||||||||+||++||++|++.|.+ |+|+||...
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~---V~vlEK~~~ 52 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFN---TACVTKLFP 52 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCG
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 57999999999999999999999987 999999853
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=86.18 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=75.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+.. . ....+.+.+++
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~~~---------~-----------~~~~l~~~l~~ 220 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPL---PSFDP---------M-----------ISETLVEVMNA 220 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTSCH---------H-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCE---EEEEEeCCchh---hhhhH---------H-----------HHHHHHHHHHH
Confidence 46899999999999999999999876 99999885311 00000 0 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCC---CEEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.+. ..+.+.+|+++++|.+|+|+|.+|+.
T Consensus 221 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~ 267 (450)
T 1ges_A 221 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN 267 (450)
T ss_dssp HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred CCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 899999999999998643 25777888889999999999999854
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-06 Score=89.35 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=32.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||+|||||++|+++|..|++.|.+ |+|+|+.+.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~---V~vlEr~~~ 60 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVG---HLVVEQTDG 60 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 57999999999999999999999987 999999865
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.24 E-value=7.9e-06 Score=84.27 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=77.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-cC-----------------------Ccc-----------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PRL----------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~-----------------------~~~----------------- 229 (461)
-.|+|||+|..|+++|..+++.|.+|.++++.+. +. ...
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 4799999999999999999999999999998631 10 000
Q ss_pred ------------cC-HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 230 ------------FT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 230 ------------~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+ ..+.+.+.+.+++ .|++++ +.+|+++.. +++.+..|.+.+|.++.||.||+|+|..++
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 01 1345566777777 699995 679999986 456777899999989999999999998653
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=86.98 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=72.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+|+++.+... +... .. ......+.+++
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 224 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERIL---PTYD---------SE-----------LTAPVAESLKK 224 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEEcCCccc---cccC---------HH-----------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999986421 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEc--CCC--cEEecCEEEEccCCCcccc
Q 012545 85 KGIELILSTEIVRADIASKTLLS--ATG--LIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~--~~~--~~~~~d~liiAtG~~~~~~ 129 (461)
.||+++.++.+.+++. ++ +.+ .+| +++.+|.+++|+|.+|..+
T Consensus 225 ~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~ 271 (458)
T 1lvl_A 225 LGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTK 271 (458)
T ss_dssp HTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred CCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCC
Confidence 8999999999999987 43 433 345 5799999999999998543
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-06 Score=91.26 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-cCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~-~g~~~~~V~vie~~~~ 42 (461)
..+||+|||||++|+++|..|++ .|++ |+|||+.+.
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~---V~viEr~~~ 67 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIR---TCIVEQKEG 67 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSC---EEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence 35799999999999999999999 8987 999999865
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.1e-06 Score=79.23 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=75.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEE-EccCCc---c--------CCc----ccCHHHHHHHHHHHHhcCcEEEcCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSM-VYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtl-i~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~GV~v~~~~ 253 (461)
..+|+|||+|+.|+.+|..|++.|.+|++ +++... + .+. ....++...+.+.+++.|++++.+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 82 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV- 82 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-
Confidence 45899999999999999999999999999 887321 0 111 112578888889999999999988
Q ss_pred cEEEEEecCCCCEEEE-EeCCCcEEecCEEEEccCCCCChh
Q 012545 254 VAVGFTTNADGEVKEV-KLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 254 ~v~~i~~~~~g~~~~v-~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
++.++ .+++.....+ ...++ ++.+|.+|+|+|.+|+..
T Consensus 83 ~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~ 121 (315)
T 3r9u_A 83 GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKA 121 (315)
T ss_dssp CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence 88888 5331122343 22334 899999999999877654
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.2e-06 Score=86.20 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+|+|+.+... +... .. ....+.+.+++
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 222 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAE---VTLIEYMPEIL---PQGD---------PE-----------TAALLRRALEK 222 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEEcCCccc---cccC---------HH-----------HHHHHHHHHHh
Confidence 47899999999999999999999876 99999986411 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcC-C--Cc--EEecCEEEEccCCCcccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSA-T--GL--IFKYQILVIATGSTVSIT 129 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~-~--~~--~~~~d~liiAtG~~~~~~ 129 (461)
.||+++.++.+.+++.+... +.+. + |+ ++++|.+++|+|.+|..+
T Consensus 223 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 274 (464)
T 2eq6_A 223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE 274 (464)
T ss_dssp TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence 99999999999999765543 4444 5 65 799999999999998643
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.6e-06 Score=84.43 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=75.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... .+ . .+ ......+.+.+++
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtvv~~~~~~l-~~------~--------~~-------~~~~~~l~~~l~~ 206 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVN---VTLLEALPRVL-AR------V--------AG-------EALSEFYQAEHRA 206 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT-TT------T--------SC-------HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCchh-hh------h--------cC-------HHHHHHHHHHHHh
Confidence 57899999999999999999999876 99999986421 00 0 00 0001234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC---EEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.++..+.. .|.+.+|+++++|.+|+|+|..|.
T Consensus 207 ~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~ 252 (415)
T 3lxd_A 207 HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPC 252 (415)
T ss_dssp TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence 9999999999999986543 477888989999999999999884
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-06 Score=85.67 Aligned_cols=101 Identities=12% Similarity=0.232 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccC--Cc----ccCH------HHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 191 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCM--PR----LFTA------DIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~--~~----~~~~------~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. +. .... ++.....+.+++.|++++.+++|+
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 5799999999999999999998 89999999987643 11 0111 111113567788999999999999
Q ss_pred EEEecCCCCEEEEE-eCCCcEEecCEEEEccCCCCChh
Q 012545 257 GFTTNADGEVKEVK-LKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 257 ~i~~~~~g~~~~v~-~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+++. +.+...+. ..+++++.+|.+|+|+|.+|...
T Consensus 83 ~id~--~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p 118 (452)
T 3oc4_A 83 AMDV--ENQLIAWTRKEEQQWYSYDKLILATGASQFST 118 (452)
T ss_dssp EEET--TTTEEEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred EEEC--CCCEEEEEecCceEEEEcCEEEECCCcccCCC
Confidence 9986 33333443 23556899999999999988654
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6.9e-06 Score=77.78 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=75.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc---C----------------C-cccCHHHHHHHHHHHHhcCcEEEc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---M----------------P-RLFTADIAAFYEGYYANKGIKIIK 251 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~---~----------------~-~~~~~~~~~~~~~~l~~~GV~v~~ 251 (461)
.|+|||+|+.|+.+|..++++|.+|+++++.+.. + + ....+++.+.+.+.+++.++++..
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT 85 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence 5899999999999999999999999999875420 0 0 012356778888889999999876
Q ss_pred CCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 252 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 252 ~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
. .+..... +.....+.+.++.++.+|.+|+|||.+|..
T Consensus 86 ~-~v~~~~~--~~~~~~~~~~~~~~~~~~~liiATG~~~~~ 123 (314)
T 4a5l_A 86 E-TIDHVDF--STQPFKLFTEEGKEVLTKSVIIATGATAKR 123 (314)
T ss_dssp C-CEEEEEC--SSSSEEEEETTCCEEEEEEEEECCCEEECC
T ss_pred e-EEEEeec--CCCceEEEECCCeEEEEeEEEEcccccccc
Confidence 5 4555554 223346778888999999999999977654
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=82.35 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=77.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-cC-----------------------Ccc-----------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PRL----------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~-----------------------~~~----------------- 229 (461)
-.|+|||+|..|+++|..+++.|.+|.++++.+. +. ...
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~ 107 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT 107 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence 4799999999999999999999999999998631 10 000
Q ss_pred ------------cC-HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 230 ------------FT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 230 ------------~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
.+ ..+.+.+.+.+++ .|++++ +.+|+++.. +++.+.+|.+.+|.++.||.||+|+|..++.
T Consensus 108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~ 182 (637)
T 2zxi_A 108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG 182 (637)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence 00 1345566677777 599995 679999986 4667778999999999999999999976543
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.5e-06 Score=85.81 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=75.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +.+. .. ....+.+.+++
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~---Vtlv~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 219 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSE---VTVVALEDRLL---FQFD---------PL-----------LSATLAENMHA 219 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEcCCccc---cccC---------HH-----------HHHHHHHHHHH
Confidence 46899999999999999999999876 99999885311 0000 00 01234566788
Q ss_pred cCcEEEcCCeEEEEeCCC--CEEEcCCCc-EEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS--KTLLSATGL-IFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~-~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.+. ..+.+.+|+ ++.+|.+++|+|.+|..
T Consensus 220 ~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 266 (463)
T 2r9z_A 220 QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT 266 (463)
T ss_dssp TTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence 999999999999997543 356777888 89999999999999854
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=82.86 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=76.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--------Cc------------cc----------------CHHH
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PR------------LF----------------TADI 234 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------~~------------~~----------------~~~~ 234 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .+ .+++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 479999999999999999999999999999875421 00 01 1344
Q ss_pred HHHHHHHHHhcC--cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 235 AAFYEGYYANKG--IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 235 ~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+++....++.+ ++++++++|++++.++++....|++++|+++.+|.||+|+|.
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~ 152 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ 152 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence 556666666665 678999999999875544456788899989999999999995
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.20 E-value=7.2e-06 Score=80.46 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=77.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc------CCcc-----------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------MPRL----------------------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~------~~~~----------------------------------- 229 (461)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. ....
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 36999999999999999999999999999987631 0000
Q ss_pred ------------------cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe-CCCc--EEecCEEEEccCC
Q 012545 230 ------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 230 ------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~G~--~i~aD~vi~a~G~ 288 (461)
-...+.+.+.+.+.+.|++++++++|++++.++++. ..|++ .+|+ ++.+|.||.|.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~-~~v~~~~~g~~~~~~a~~vV~AdG~ 161 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGER-PYVTFERDGERLRLDCDYIAGCDGF 161 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSS-CEEEEEETTEEEEEECSEEEECCCT
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCc-eEEEEecCCcEEEEEeCEEEECCCC
Confidence 012345566677777899999999999998743333 35666 6887 7999999999998
Q ss_pred CCCh
Q 012545 289 RPLI 292 (461)
Q Consensus 289 ~p~~ 292 (461)
....
T Consensus 162 ~S~v 165 (394)
T 1k0i_A 162 HGIS 165 (394)
T ss_dssp TCST
T ss_pred CcHH
Confidence 7664
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8e-06 Score=79.66 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+.+.+.+.+++.|++++.+++|+++..+ ++.+ .|++.+| ++.+|.||+|+|....
T Consensus 165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 165 FVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG 220 (382)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH
T ss_pred HHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH
Confidence 45666778888899999999999999873 4444 7788877 8999999999997643
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-06 Score=84.00 Aligned_cols=100 Identities=20% Similarity=0.363 Sum_probs=71.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCC------ccc-----CHHHHHHHHHHH-HhcCcEEEcCCcE
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP------RLF-----TADIAAFYEGYY-ANKGIKIIKGTVA 255 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~------~~~-----~~~~~~~~~~~l-~~~GV~v~~~~~v 255 (461)
.++|+|||+|+.|+.+|..|++. +.+|+++++.+.+.. ..+ ..++.....+.+ ++.|++++.+++|
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v 82 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV 82 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence 46899999999999999999998 789999999875321 100 111122222333 6889999999999
Q ss_pred EEEEecCCCCEEEEEeCCC-cEEecCEEEEccCCCCChh
Q 012545 256 VGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~~p~~~ 293 (461)
++++. +. ..+.+.+| .++.+|.+|+|+|.+|...
T Consensus 83 ~~i~~--~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p 117 (449)
T 3kd9_A 83 IEVDT--GY--VRVRENGGEKSYEWDYLVFANGASPQVP 117 (449)
T ss_dssp EEECS--SE--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred EEEec--CC--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence 99864 22 45677777 4899999999999877643
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-06 Score=85.80 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=72.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||+|+.|+.+|..|++.|.+ |+|+++.+... +... .. ......+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 223 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL---SGFE---------KQ-----------MAAIIKKRLKK 223 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc---cccC---------HH-----------HHHHHHHHHHH
Confidence 57999999999999999999999876 99999985311 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcC---CCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSA---TGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~---~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.+... +.+. +++++++|.+++|+|.+|..
T Consensus 224 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~ 272 (455)
T 1ebd_A 224 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT 272 (455)
T ss_dssp TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESC
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCccc
Confidence 99999999999999765533 3332 45679999999999999854
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.8e-05 Score=81.66 Aligned_cols=115 Identities=24% Similarity=0.281 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhc--CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-------------------------
Q 012545 177 DADKLVEAIKAK--KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------- 229 (461)
Q Consensus 177 ~~~~l~~~l~~~--~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------------------------- 229 (461)
+...+...+... ....|+|||+|..|+.+|..+++.|.+|+++++.+.+....
T Consensus 111 ~~~~~~~~~~~~~~~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~ 190 (572)
T 1d4d_A 111 DKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQ 190 (572)
T ss_dssp SHHHHHHHHHSCCCEECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTH
T ss_pred cHHHHHHHhhccCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHH
Confidence 344444444421 24579999999999999999999999999999876432100
Q ss_pred --------------------------------------------------------------cCHHHHHHHHHHHHhcCc
Q 012545 230 --------------------------------------------------------------FTADIAAFYEGYYANKGI 247 (461)
Q Consensus 230 --------------------------------------------------------------~~~~~~~~~~~~l~~~GV 247 (461)
....+.+.+.+.+++.||
T Consensus 191 ~~~~~~~~~g~~~~~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv 270 (572)
T 1d4d_A 191 IMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGT 270 (572)
T ss_dssp HHHHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCC
Confidence 012344566777788999
Q ss_pred EEEcCCcEEEEEecCCCCEEEEEeC--CCc--EEecCEEEEccCCCCC
Q 012545 248 KIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 248 ~v~~~~~v~~i~~~~~g~~~~v~~~--~G~--~i~aD~vi~a~G~~p~ 291 (461)
+++++++|+++..++++++.+|.+. +|+ ++.+|.||+|+|..++
T Consensus 271 ~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 271 DIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp EEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred eEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 9999999999987333777777665 674 6899999999996553
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.3e-06 Score=84.83 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=76.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-----CcEEEEccCCccCC-------c-------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN-----IDVSMVYPEPWCMP-------R------------------------------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g-----~~Vtli~~~~~~~~-------~------------------------------- 228 (461)
.|+|||+|+.|+.+|..|++.| .+|+++++.+.+.- .
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~ 111 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD 111 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence 7999999999999999999999 99999998873210 0
Q ss_pred ----------c--cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCC-CCE--EEEEeCCCc----EEecCEEEEccCCC
Q 012545 229 ----------L--FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEV--KEVKLKDGR----TLEADIVVVGVGGR 289 (461)
Q Consensus 229 ----------~--~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~~--~~v~~~~G~----~i~aD~vi~a~G~~ 289 (461)
. ...++.+.+....++.+++++++++|++++..++ +.. ..|++.+|+ ++.+|.||+|+|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~ 191 (463)
T 3s5w_A 112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT 191 (463)
T ss_dssp CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence 0 0134445566666777899999999999986321 332 356777765 89999999999987
Q ss_pred CChh
Q 012545 290 PLIS 293 (461)
Q Consensus 290 p~~~ 293 (461)
|..+
T Consensus 192 p~~p 195 (463)
T 3s5w_A 192 PRIP 195 (463)
T ss_dssp ECCC
T ss_pred CCCc
Confidence 7644
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-06 Score=84.52 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=35.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
||++.+||+|||||++|+++|++|+++|.+ |+|+|++..
T Consensus 2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~---V~vle~~~~ 40 (363)
T 1c0p_A 2 MMHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARDLP 40 (363)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCT
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhCCCE---EEEEeccCC
Confidence 777789999999999999999999999986 999999863
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=8.3e-06 Score=81.29 Aligned_cols=95 Identities=14% Similarity=0.202 Sum_probs=75.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..+++.|.+ |+|+++.+...- . .... ......+.+++
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~ll~-----------~-~d~~-----------~~~~~~~~l~~ 200 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLH---PTLIHRSDKINK-----------L-MDAD-----------MNQPILDELDK 200 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSSCCST-----------T-SCGG-----------GGHHHHHHHHH
T ss_pred CcEEEEECCccchhhhHHHHHhcCCc---ceeeeeeccccc-----------c-ccch-----------hHHHHHHHhhc
Confidence 46899999999999999999999976 999999864210 0 0000 01345677888
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.+++ ...+.+.+++++++|.+++|+|.+|+
T Consensus 201 ~gV~i~~~~~v~~~~--~~~v~~~~g~~~~~D~vl~a~G~~Pn 241 (437)
T 4eqs_A 201 REIPYRLNEEINAIN--GNEITFKSGKVEHYDMIIEGVGTHPN 241 (437)
T ss_dssp TTCCEEESCCEEEEE--TTEEEETTSCEEECSEEEECCCEEES
T ss_pred cceEEEeccEEEEec--CCeeeecCCeEEeeeeEEEEeceecC
Confidence 999999999998876 45688899999999999999999884
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=5.6e-06 Score=78.40 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~~ 43 (461)
.+||+|||||++|++||..|++. |++ |+|+|+.+..
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~---V~v~e~~~~~ 102 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESSVAP 102 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCe---EEEEecCccc
Confidence 46999999999999999999998 776 9999998653
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-06 Score=84.32 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=75.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. .. ......+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~d---------~~-----------~~~~l~~~l~~ 238 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSE---THLVIRGETVL---RKFD---------EC-----------IQNTITDHYVK 238 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCE---EEEECSSSSSC---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEeCCccc---cccC---------HH-----------HHHHHHHHHHh
Confidence 47899999999999999999999876 99999986411 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCC----CEEEcCCC-cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS----KTLLSATG-LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~----~~v~~~~~-~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+. ..+.+.+| +++.+|.+|+|+|.+|+.
T Consensus 239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp HTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred CCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 899999999999997542 25777788 789999999999998853
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.3e-06 Score=86.74 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=76.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCC----------cc-c--CHHHHHHHHHHHHhcCcEEEcCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP----------RL-F--TADIAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~----------~~-~--~~~~~~~~~~~l~~~GV~v~~~~ 253 (461)
..++|+|||+|+.|+.+|..|++. |.+|+++++.+.+.- .. . ...+...+....++.|+++++++
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 114 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS 114 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence 457899999999999999999998 899999999876321 00 0 11123345566678899999999
Q ss_pred cEEEEEecCCCCEEEEEe-CCCc--EEecCEEEEccCCCCChh
Q 012545 254 VAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 254 ~v~~i~~~~~g~~~~v~~-~~G~--~i~aD~vi~a~G~~p~~~ 293 (461)
+|+++.. ++....+.. .+|+ ++.+|.+|+|+|.+|...
T Consensus 115 ~V~~id~--~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p 155 (588)
T 3ics_A 115 EVVKINK--EEKTITIKNVTTNETYNEAYDVLILSPGAKPIVP 155 (588)
T ss_dssp EEEEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEEEC--CCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence 9999986 333334443 4565 789999999999877643
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=5.8e-06 Score=83.97 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=75.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ......+.+++
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~d---------~~-----------~~~~l~~~l~~ 229 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRIL---RKFD---------ES-----------VINVLENDMKK 229 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSC---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCe---EEEEecCCccC---cccc---------hh-----------hHHHHHHHHHh
Confidence 46899999999999999999998876 99999985411 0000 00 01234567788
Q ss_pred cCcEEEcCCeEEEEeCCC---CEEEcCCCcE-EecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS---KTLLSATGLI-FKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~-~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+. ..+.+.+|++ +++|.+++|+|.+|..
T Consensus 230 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~ 277 (500)
T 1onf_A 230 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT 277 (500)
T ss_dssp TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence 999999999999997543 2577778887 9999999999999854
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.1e-06 Score=88.42 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc------CCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ------GVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~------g~~~~~V~vie~~~~ 42 (461)
.+||||||||+||++||++|++. |.+ |+|+||...
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~---V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAK---ILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCC---EEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCc---EEEEEecCC
Confidence 58999999999999999999997 877 999999754
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=80.75 Aligned_cols=101 Identities=21% Similarity=0.262 Sum_probs=78.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC------c------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------R------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------~------------------------------------ 228 (461)
-+|+|||+|+.|+.+|..|++.|.+|+++++.+.... .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 4799999999999999999999999999998764210 0
Q ss_pred ---------cc-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCCCCh
Q 012545 229 ---------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPLI 292 (461)
Q Consensus 229 ---------~~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~~ 292 (461)
.+ ...+.+.+.+.+++.|++++.+++|+++.. +++.+.+|++. +|+ ++.||.||.|.|.....
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v 164 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF 164 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence 00 024566777778889999999999999987 34555445554 676 79999999999976654
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.8e-05 Score=80.40 Aligned_cols=102 Identities=22% Similarity=0.335 Sum_probs=80.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHC------CCcEEEEccCCccCCc------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKIN------NIDVSMVYPEPWCMPR------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~------g~~Vtli~~~~~~~~~------------------------------------ 228 (461)
-.|+|||+|+.|+-+|..|++. |.+|+++++.+.+...
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4799999999999999999998 9999999986432100
Q ss_pred --------cc---C--------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC------CC---
Q 012545 229 --------LF---T--------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------DG--- 274 (461)
Q Consensus 229 --------~~---~--------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------~G--- 274 (461)
.+ + ..+.+.+.+.+++.||+++++++++++..++++.+.+|++. +|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~ 195 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence 00 0 14566778888889999999999999988556777778776 33
Q ss_pred ------cEEecCEEEEccCCCCCh
Q 012545 275 ------RTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 275 ------~~i~aD~vi~a~G~~p~~ 292 (461)
.++.+|.||.|.|.....
T Consensus 196 ~~~~~g~~i~Ad~VV~AdG~~S~v 219 (584)
T 2gmh_A 196 TTFERGLELHAKVTIFAEGCHGHL 219 (584)
T ss_dssp EEEECCCEEECSEEEECCCTTCHH
T ss_pred cccCCceEEECCEEEEeeCCCchH
Confidence 689999999999988754
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.9e-06 Score=83.69 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=75.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
..+++|||+|+.|+.+|..|++. |.+ |+++++.+... +.+. .. ....+.+.
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l---~~~d---------~~-----------~~~~l~~~ 240 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQ---VDLAYRGDMIL---RGFD---------SE-----------LRKQLTEQ 240 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCE---EEEEESSSSSS---TTSC---------HH-----------HHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCe---EEEEEcCCCcc---cccC---------HH-----------HHHHHHHH
Confidence 46899999999999999999998 765 99999986411 0000 00 01234566
Q ss_pred HHHcCcEEEcCCeEEEEeCCC---CEEEcCCCcEEecCEEEEccCCCccc
Q 012545 82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
+++.|++++.++.+.+++.+. ..+.+.+|+++.+|.+|+|+|.+|..
T Consensus 241 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 241 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp HHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence 788999999999999998653 25777788889999999999998854
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.1e-06 Score=78.90 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=69.6
Q ss_pred cEEEECCCHHHHHHHHHHHH---CCCcEEEEccCCccCCc-------------------cc---CH---HH---------
Q 012545 192 KAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR-------------------LF---TA---DI--------- 234 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~---~g~~Vtli~~~~~~~~~-------------------~~---~~---~~--------- 234 (461)
+|+|||+|..|+-+|..|++ .|.+|+++++.+.+..+ .+ +. .+
T Consensus 3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA 82 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence 69999999999999999999 89999999987432110 00 00 11
Q ss_pred -----------------------------HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEc
Q 012545 235 -----------------------------AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 285 (461)
Q Consensus 235 -----------------------------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a 285 (461)
...+....++.|++++++++|++++.++++ ..|++.+|+++.+|.||+|
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vV~A 160 (342)
T 3qj4_A 83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTGSPEQFDLIVLT 160 (342)
T ss_dssp TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS--EEEEESSSCCEEESEEEEC
T ss_pred CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEEC
Confidence 112223334448999999999999984444 4688889988999999999
Q ss_pred cC
Q 012545 286 VG 287 (461)
Q Consensus 286 ~G 287 (461)
+.
T Consensus 161 ~p 162 (342)
T 3qj4_A 161 MP 162 (342)
T ss_dssp SC
T ss_pred CC
Confidence 87
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.2e-06 Score=83.63 Aligned_cols=98 Identities=14% Similarity=0.241 Sum_probs=75.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
..+++|||+|+.|+.+|..|++. |.+ |+++++.+... +.+. .. ....+.+.
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l---~~~d---------~~-----------~~~~l~~~ 244 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGK---VTLCYRNNLIL---RGFD---------ET-----------IREEVTKQ 244 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCE---EEEEESSSSSC---TTSC---------HH-----------HHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEEcCCccc---cccC---------HH-----------HHHHHHHH
Confidence 46899999999999999999998 765 99999986411 0000 00 01234567
Q ss_pred HHHcCcEEEcCCeEEEEeCCC---CEEEcCCCcEEecCEEEEccCCCccc
Q 012545 82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
+++.||+++.++.+.+++.+. ..+.+.+|+++++|.+|+|+|.+|+.
T Consensus 245 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 294 (495)
T 2wpf_A 245 LTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT 294 (495)
T ss_dssp HHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred HHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence 788999999999999997653 35777888889999999999998854
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.3e-05 Score=80.95 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=79.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 468999999999999999999999999999987321000
Q ss_pred ---------------------cc-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CC--cEEecCEEE
Q 012545 229 ---------------------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DG--RTLEADIVV 283 (461)
Q Consensus 229 ---------------------~~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G--~~i~aD~vi 283 (461)
.+ ...+.+.+.+.+++.|++++.+++|+++..+ ++....|++. +| .++.||.||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV 181 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI 181 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence 00 1345667778888899999999999999863 4555677776 67 579999999
Q ss_pred EccCCCCC
Q 012545 284 VGVGGRPL 291 (461)
Q Consensus 284 ~a~G~~p~ 291 (461)
.|+|....
T Consensus 182 ~AdG~~S~ 189 (591)
T 3i3l_A 182 DAGGSGGP 189 (591)
T ss_dssp ECCGGGCH
T ss_pred ECCCCcch
Confidence 99998653
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5e-06 Score=83.96 Aligned_cols=98 Identities=16% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +... . .....+.+.+++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~~---------~-----------~~~~~l~~~l~~ 236 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIG---ASMD---------G-----------EVAKATQKFLKK 236 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---SSSC---------H-----------HHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCE---EEEEEeCCccc---cccC---------H-----------HHHHHHHHHHHH
Confidence 47899999999999999999999876 99999986411 0000 0 001234566788
Q ss_pred cCcEEEcCCeEEEEeC--CCC--EEEcC-----CCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADI--ASK--TLLSA-----TGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~--~~~--~v~~~-----~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++. +.+ .+.+. +++++++|.+|+|+|.+|..
T Consensus 237 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~ 289 (478)
T 1v59_A 237 QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI 289 (478)
T ss_dssp TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred CCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence 9999999999999986 443 34443 34679999999999998854
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.10 E-value=7e-06 Score=82.75 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=64.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCcc------CCcccC------HHH-------HHHHHHHHHhcCcE
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWC------MPRLFT------ADI-------AAFYEGYYANKGIK 248 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~------~~~~~~------~~~-------~~~~~~~l~~~GV~ 248 (461)
.++|+|||+|+.|+.+|..|++. |.+|+++++.+.+ ++..+. .++ ........++.|++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 36899999999999999999998 8999999998763 111111 111 12222333358999
Q ss_pred EEcCCcEEEEEecCCCCEEEEEe-CCCc--EEecCEEEEccCCCCChh
Q 012545 249 IIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 249 v~~~~~v~~i~~~~~g~~~~v~~-~~G~--~i~aD~vi~a~G~~p~~~ 293 (461)
++.+++|++++. ++....+.. .+|+ ++.+|.+|+|+|.+|...
T Consensus 83 ~~~~~~V~~id~--~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p 128 (472)
T 3iwa_A 83 ALVETRAHAIDR--AAHTVEIENLRTGERRTLKYDKLVLALGSKANRP 128 (472)
T ss_dssp EECSEEEEEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEECCEEEEEEC--CCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence 999999999986 443334443 3465 799999999999877543
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.9e-06 Score=82.65 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=75.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+..|..+++.|.+ |+|+++....+... .. ........+++
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~---VTii~~~~~L~~~D-------------~e-----------i~~~l~~~l~~ 275 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYD---VTVAVRSIVLRGFD-------------QQ-----------CAVKVKLYMEE 275 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCC---EEEEESSCSSTTSC-------------HH-----------HHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCe---EEEecccccccccc-------------hh-----------HHHHHHHHHHh
Confidence 57899999999999999999999987 99998764321100 00 01235667888
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCcccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~~~~ 129 (461)
.|++++.+..+..+...... +.+.++.++.+|.+++|+|.+|+..
T Consensus 276 ~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~ 322 (542)
T 4b1b_A 276 QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID 322 (542)
T ss_dssp TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence 99999999999888765554 5567778899999999999998643
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=6.7e-06 Score=83.98 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=74.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHc
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
.+++|||+|..|+.+|..|++.|.+ |+++++.+... . ... .. ....+.+.+++.
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~---Vtlv~~~~~~l-~--~~~---------~~-----------~~~~l~~~l~~~ 268 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLK-L--IKD---------NE-----------TRAYVLDRMKEQ 268 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT-T--CCS---------HH-----------HHHHHHHHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccc-c--ccc---------HH-----------HHHHHHHHHHhC
Confidence 7899999999999999999999876 99999986411 0 000 00 012345677889
Q ss_pred CcEEEcCCeEEEEeCC--C----CEEEcCCCc-EEecCEEEEccCCCccc
Q 012545 86 GIELILSTEIVRADIA--S----KTLLSATGL-IFKYQILVIATGSTVSI 128 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~--~----~~v~~~~~~-~~~~d~liiAtG~~~~~ 128 (461)
|++++.++.|.+++.+ . ..+.+.+|+ ++++|.+|+|+|.+|..
T Consensus 269 GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~ 318 (523)
T 1mo9_A 269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318 (523)
T ss_dssp TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence 9999999999999863 3 236677776 79999999999999853
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.3e-05 Score=74.16 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=74.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc---cC--------C---cccCHHHHHHHHHHHHhcCcEEEcCCcEEE
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---CM--------P---RLFTADIAAFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~---~~--------~---~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
.|+|||+|+.|+.+|..+++.|.+|+++++... ++ + ....+++.........+.+..+..+..+..
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV 87 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence 589999999999999999999999999987531 10 1 112356777777888888888888777666
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
... .. ..+...+++++.+|.+|+|||.+|...
T Consensus 88 ~~~--~~--~~~~~~~~~~~~~d~liiAtGs~~~~~ 119 (312)
T 4gcm_A 88 EDK--GE--YKVINFGNKELTAKAVIIATGAEYKKI 119 (312)
T ss_dssp EEC--SS--CEEEECSSCEEEEEEEEECCCEEECCC
T ss_pred eee--ec--ceeeccCCeEEEeceeEEcccCccCcC
Confidence 554 22 245567788999999999999877553
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.5e-05 Score=72.22 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=104.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCcc-------------------------------------c
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL-------------------------------------F 230 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~~-------------------------------------~ 230 (461)
..+|+|||+|+.|+.+|..|++. |.+|+++++.+.+.... .
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~ 144 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH 144 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence 44899999999999999999998 99999999865442110 1
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecC--C-C--CEEEEEeC--------------CCcEEec-----------
Q 012545 231 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNA--D-G--EVKEVKLK--------------DGRTLEA----------- 279 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~--~-g--~~~~v~~~--------------~G~~i~a----------- 279 (461)
..++.+.+.+.+.+. |++++.+++|+++..++ + + ++.+|.+. ++.++.|
T Consensus 145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~ 224 (326)
T 2gjc_A 145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL 224 (326)
T ss_dssp HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence 233455566666664 99999999999998743 3 4 77777652 3457999
Q ss_pred ----CEEEEccCCCCChh-hhhccc---ccC---CCc----------EEeCCCCC-CCCCCEEEeCcccccCccccCcce
Q 012545 280 ----DIVVVGVGGRPLIS-LFKGQV---AEN---KGG----------IETDDFFK-TSADDVYAVGDVATFPMKLYREMR 337 (461)
Q Consensus 280 ----D~vi~a~G~~p~~~-~~~~~~---~~~---~g~----------i~vd~~~~-t~~~~vya~GD~~~~~~~~~~~~~ 337 (461)
+.||.|+|...... ++...+ ... .|- ..|+..-. +-+|++|++|-.+..-.... +
T Consensus 225 ~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---r 301 (326)
T 2gjc_A 225 SQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLN---R 301 (326)
T ss_dssp STTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCC---B
T ss_pred cccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCC---C
Confidence 99999999765432 321110 000 010 11111112 15899999998874321100 0
Q ss_pred eeccHHHHHHHHHHHHHHHhcc
Q 012545 338 RVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 338 ~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
--+....-..+|+.||+.|+..
T Consensus 302 ~g~~fg~m~~sg~~~a~~~~~~ 323 (326)
T 2gjc_A 302 MGPTFGAMALSGVHAAEQILKH 323 (326)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhhhhhhHHHHHHHHHH
Confidence 0022223346889999888753
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.3e-05 Score=80.78 Aligned_cols=100 Identities=15% Similarity=0.293 Sum_probs=76.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-cC-----------------------Cc-----------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PR----------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~-----------------------~~----------------- 228 (461)
.-.|+|||+|..|+++|..+++.|.+|+++++.+. +. ..
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~ 100 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN 100 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence 34799999999999999999999999999998631 10 00
Q ss_pred ------------ccC-HHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 229 ------------LFT-ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 229 ------------~~~-~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
..+ ..+.+.+.+.+++. |++++. ..|+.+.. +++.+.+|.+.+|+++.||.||+|+|..++
T Consensus 101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSA-NSGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEE-ETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEe-cCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 001 13455666777774 999964 58999876 356666788999999999999999997754
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=7.9e-06 Score=82.41 Aligned_cols=99 Identities=13% Similarity=0.193 Sum_probs=73.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... .+ . +.. .......+.+++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-~~-~-------------~~~-------~~~~~l~~~l~~ 232 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGAD---VTAVEFLGHVG-GV-G-------------IDM-------EISKNFQRILQK 232 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-CS-S-------------CCH-------HHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCE---EEEEeccCccC-Cc-c-------------cCH-------HHHHHHHHHHHH
Confidence 46899999999999999999999876 99999986411 00 0 000 001234567788
Q ss_pred cCcEEEcCCeEEEEeCCCC---EEE-----cCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK---TLL-----SATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~-----~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.+.. .+. ..+++++++|.+|+|+|.+|..
T Consensus 233 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~ 284 (474)
T 1zmd_A 233 QGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT 284 (474)
T ss_dssp TTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred CCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence 9999999999999986553 233 2456689999999999999854
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=6.2e-06 Score=83.53 Aligned_cols=98 Identities=15% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||+|+.|+.+|..|++.|.+ |+++++.+... .. .+. . .......+.+++
T Consensus 194 ~~~vvVIGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l------~~-~~~----~-----------~~~~~l~~~l~~ 248 (490)
T 2bc0_A 194 IKRVAVVGAGYIGVELAEAFQRKGKE---VVLIDVVDTCL------AG-YYD----R-----------DLTDLMAKNMEE 248 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT------TT-TSC----H-----------HHHHHHHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEEEcccchh------hh-HHH----H-----------HHHHHHHHHHHh
Confidence 57899999999999999999999876 99999986421 00 000 0 001234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+++ .+.+ +++++++|.+|+|+|.+|..
T Consensus 249 ~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~ 293 (490)
T 2bc0_A 249 HGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNT 293 (490)
T ss_dssp TTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECC
T ss_pred CCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcCh
Confidence 9999999999999986443 3555 66789999999999998854
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=78.12 Aligned_cols=100 Identities=25% Similarity=0.360 Sum_probs=76.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~g 102 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCCC
Confidence 568999999999999999999999999999987643100
Q ss_pred ----cc-----------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 229 ----LF-----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 229 ----~~-----------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.+ ...+.+.+.+.+++ ++++++++|++++.++++ ..+++.+|+++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~AdG 178 (407)
T 3rp8_A 103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADG--VTVWFTDGSSASGDLLIAADG 178 (407)
T ss_dssp CEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTE--EEEEETTSCEEEESEEEECCC
T ss_pred CEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCc--EEEEEcCCCEEeeCEEEECCC
Confidence 00 01233444555544 889999999999874333 568899999999999999999
Q ss_pred CCCChh
Q 012545 288 GRPLIS 293 (461)
Q Consensus 288 ~~p~~~ 293 (461)
......
T Consensus 179 ~~S~vr 184 (407)
T 3rp8_A 179 SHSALR 184 (407)
T ss_dssp TTCSSH
T ss_pred cChHHH
Confidence 876553
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=7.4e-06 Score=82.36 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=73.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+..- +... .. ......+.+++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 224 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVD---VTIVEFLPRAL---PNED---------AD-----------VSKEIEKQFKK 224 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcCCccc---cccC---------HH-----------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999985311 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcC-CC--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSA-TG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~-~~--~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+.. .+.+. +| +++.+|.+++|+|.+|+.
T Consensus 225 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~ 273 (464)
T 2a8x_A 225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV 273 (464)
T ss_dssp HTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred cCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence 8999999999999986543 34443 55 579999999999999854
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=4.4e-06 Score=84.46 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=73.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+|+++.+... +... .. ......+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 238 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLM---QGAD---------RD-----------LVKVWQKQNEY 238 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHGG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCccc---cccC---------HH-----------HHHHHHHHHHh
Confidence 47899999999999999999999876 99999986411 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCC----CcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSAT----GLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~----~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+.. .+.+.+ ++++.+|.+++|+|.+|+.
T Consensus 239 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~ 288 (482)
T 1ojt_A 239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG 288 (482)
T ss_dssp GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred cCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence 8999999999999976543 355555 6678999999999999854
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=81.89 Aligned_cols=98 Identities=15% Similarity=0.276 Sum_probs=75.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ....+.+.+++
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~d---------~~-----------~~~~l~~~l~~ 235 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVP---VTVVASQDHVL---PYED---------AD-----------AALVLEESFAE 235 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCC---EEEECSSSSSS---CCSS---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---cccC---------HH-----------HHHHHHHHHHH
Confidence 46899999999999999999999876 99999886421 0000 00 01234567788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.|.+++.+.. .+.+.+++++.+|.+|+|+|.+|..
T Consensus 236 ~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 236 RGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT 281 (499)
T ss_dssp TTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred CCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 9999999999999986553 3555677789999999999999854
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-05 Score=76.77 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=72.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----cc---C---HHH-------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF---T---ADI------------------------- 234 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----~~---~---~~~------------------------- 234 (461)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+ .+ . ..+
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 468999999999999999999999999999987643211 00 0 000
Q ss_pred ---------------------HHHHHHHHHhc--CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 235 ---------------------AAFYEGYYANK--GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 235 ---------------------~~~~~~~l~~~--GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
...+.+.|.+. +++++++++|++++.++++ ..|++.+|+++.+|.||.|.|....
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKK--WTLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSS--EEEEETTSCCEEESEEEECSCTTCS
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCE--EEEEECCCcEEecCEEEECCCcchh
Confidence 01112222221 3578899999999874433 4688899989999999999998664
Q ss_pred h
Q 012545 292 I 292 (461)
Q Consensus 292 ~ 292 (461)
.
T Consensus 184 v 184 (398)
T 2xdo_A 184 V 184 (398)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.8e-05 Score=75.41 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
.+.+.+.+.+++.|++++.+++|+++..++++ ..|++.+| ++.+|.||+|+|...
T Consensus 150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~v~~~~g-~~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG--VTIETADG-EYQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-EEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE--EEEEECCC-eEEcCEEEEcCCccH
Confidence 34455667778889999999999999874333 46788888 599999999999643
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.7e-05 Score=74.77 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=73.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc------ccCHHH-------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------LFTADI------------------------------- 234 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------~~~~~~------------------------------- 234 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.+..
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN 82 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence 7999999999999999999999999999987654221 011111
Q ss_pred ----------------------------HHHHHHHHH-hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEc
Q 012545 235 ----------------------------AAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 285 (461)
Q Consensus 235 ----------------------------~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a 285 (461)
...+.+.|. ..+..+++++++++++..+++. ..|+++||+++++|+||-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~-v~v~~~dG~~~~adlvVgA 161 (412)
T 4hb9_A 83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGG-IKIFFADGSHENVDVLVGA 161 (412)
T ss_dssp TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEEC
T ss_pred CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCe-EEEEECCCCEEEeeEEEEC
Confidence 011223332 2345688899999998755554 4789999999999999999
Q ss_pred cCCCCCh
Q 012545 286 VGGRPLI 292 (461)
Q Consensus 286 ~G~~p~~ 292 (461)
-|.+...
T Consensus 162 DG~~S~v 168 (412)
T 4hb9_A 162 DGSNSKV 168 (412)
T ss_dssp CCTTCHH
T ss_pred CCCCcch
Confidence 9987644
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.02 E-value=7.9e-06 Score=81.84 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=72.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... . . .+. . .....+.+.+++
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-~-----~-~~~----~-----------~~~~~l~~~l~~ 203 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYN---VNLIDGHERVL-Y-----K-YFD----K-----------EFTDILAKDYEA 203 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSTT-T-----T-TSC----H-----------HHHHHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCE---EEEEEcCCchh-h-----h-hhh----h-----------hHHHHHHHHHHH
Confidence 47899999999999999999998876 99999986321 0 0 000 0 001234566788
Q ss_pred cCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++++.+++.++.. +.+ +++++++|.+|+|+|.+|..
T Consensus 204 ~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~ 249 (452)
T 2cdu_A 204 HGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPNT 249 (452)
T ss_dssp TTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEECC
T ss_pred CCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCCH
Confidence 99999999999999863332 344 67789999999999999854
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.3e-05 Score=77.80 Aligned_cols=101 Identities=18% Similarity=0.237 Sum_probs=76.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--------Cc----------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PR---------------------------------- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------~~---------------------------------- 228 (461)
.+|+|||+|..|+-+|..|++.|.+|+++++.+... +.
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP 87 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence 479999999999999999999999999999875100 00
Q ss_pred -------------------cc-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE--eCCCc--EEecCEEEE
Q 012545 229 -------------------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK--LKDGR--TLEADIVVV 284 (461)
Q Consensus 229 -------------------~~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~--~~~G~--~i~aD~vi~ 284 (461)
.+ ...+.+.+.+.+++.|++++.+++|+++.. +++.+..|. +.+|+ ++.+|.||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~ 166 (512)
T 3e1t_A 88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVD 166 (512)
T ss_dssp SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence 00 123455677778889999999999999987 455544444 45674 799999999
Q ss_pred ccCCCCCh
Q 012545 285 GVGGRPLI 292 (461)
Q Consensus 285 a~G~~p~~ 292 (461)
|+|.....
T Consensus 167 AdG~~S~v 174 (512)
T 3e1t_A 167 ASGNRTRV 174 (512)
T ss_dssp CCCTTCSS
T ss_pred CCCcchHH
Confidence 99986543
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=81.22 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH-H
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-K 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ....+.+.+ +
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~d---------~~-----------~~~~l~~~l~~ 227 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAE---VTVVEFAPRCA---PTLD---------ED-----------VTNALVGALAK 227 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCE---EEEEecCCccc---ccCC---------HH-----------HHHHHHHHHhh
Confidence 47899999999999999999999876 99999985411 0000 00 012345667 8
Q ss_pred HcCcEEEcCCeEEEEeCCCC--EEEcC--CC--cEEecCEEEEccCCCccc
Q 012545 84 EKGIELILSTEIVRADIASK--TLLSA--TG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~--~~--~~~~~d~liiAtG~~~~~ 128 (461)
+.|++++.++++.+++.+.. .+.+. +| +++++|.+++|+|.+|+.
T Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~ 278 (468)
T 2qae_A 228 NEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT 278 (468)
T ss_dssp HTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred cCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence 89999999999999986543 34443 55 579999999999999854
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-05 Score=80.42 Aligned_cols=99 Identities=23% Similarity=0.293 Sum_probs=77.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------------------------------------Cc-----
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------------------PR----- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------------------------------------~~----- 228 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ..
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 479999999999999999999999999999764311 00
Q ss_pred ---------------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--CCC-cEEecCEEEEccCCCC
Q 012545 229 ---------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDG-RTLEADIVVVGVGGRP 290 (461)
Q Consensus 229 ---------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G-~~i~aD~vi~a~G~~p 290 (461)
.-...+.+.+.+.+++.|++++.+++|++++.++++. .|++ .+| +++.+|.||.|.|.+.
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 0013456677788888899999999999998755553 4555 788 7899999999999865
Q ss_pred C
Q 012545 291 L 291 (461)
Q Consensus 291 ~ 291 (461)
.
T Consensus 208 ~ 208 (570)
T 3fmw_A 208 T 208 (570)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=6.9e-06 Score=82.72 Aligned_cols=98 Identities=17% Similarity=0.325 Sum_probs=73.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ......+.+++
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 230 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIV---PTMD---------AE-----------IRKQFQRSLEK 230 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc---cccc---------HH-----------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999986421 0000 00 01234566788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcC---CC--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSA---TG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~---~~--~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+.. .+.+. ++ +++++|.+++|+|.+|..
T Consensus 231 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~ 281 (470)
T 1dxl_A 231 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT 281 (470)
T ss_dssp SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence 9999999999999987653 34433 34 679999999999999853
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=8.4e-06 Score=84.12 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=72.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCcc--cCH-----------HHHHHHHHHHHhcCcEEEcCCcE
Q 012545 191 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL--FTA-----------DIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~~--~~~-----------~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
++|+|||+|+.|+.+|..|++. +.+|+++++.+.+.-.. ++. .+.+......++.|++++++++|
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 81 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV 81 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence 4799999999999999999998 78999999987642100 000 01112334445589999999999
Q ss_pred EEEEecCCCCEEEEEe-CCCc--EEecCEEEEccCCCCChh
Q 012545 256 VGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~-~~G~--~i~aD~vi~a~G~~p~~~ 293 (461)
++++. +++...+.. .+|+ ++.+|.+|+|||.+|...
T Consensus 82 ~~id~--~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p 120 (565)
T 3ntd_A 82 VAIDR--AAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP 120 (565)
T ss_dssp EEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEC--CCCEEEEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence 99986 444334443 3354 789999999999877653
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.2e-06 Score=83.82 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=70.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc-------CCcc-cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-------MPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-------~~~~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++.+ ++.++.+...+.+++.||++++++.+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 196 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG---- 196 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence 3568999999999999999999999999999998764 2221 466777888889999999999998752
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
. .+.++++ .+.+|.||+|+|..
T Consensus 197 --~----~v~~~~~-~~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 197 --R----DASLPEL-RRKHVAVLVATGVY 218 (456)
T ss_dssp --T----TBCHHHH-HSSCSEEEECCCCC
T ss_pred --c----EEEhhHh-HhhCCEEEEecCCC
Confidence 0 1223333 35799999999986
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=97.99 E-value=4e-05 Score=78.46 Aligned_cols=100 Identities=24% Similarity=0.253 Sum_probs=77.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------- 227 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------- 227 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 4799999999999999999999999999998753200
Q ss_pred ------------c------------------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCC--EEEEEeCCC-
Q 012545 228 ------------R------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE--VKEVKLKDG- 274 (461)
Q Consensus 228 ------------~------------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~--~~~v~~~~G- 274 (461)
. .-...+.+.+.+.+++.|++++++++|++++.++++. ...+++.++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~ 165 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD 165 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence 0 0012445667788888899999999999999744411 245666665
Q ss_pred --cEEecCEEEEccCCCC
Q 012545 275 --RTLEADIVVVGVGGRP 290 (461)
Q Consensus 275 --~~i~aD~vi~a~G~~p 290 (461)
.++.||.||.|.|...
T Consensus 166 ~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 166 GEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp EEEEEEEEEEEECCCTTC
T ss_pred CeEEEEeCEEEECCCCcc
Confidence 6899999999999754
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-05 Score=80.09 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=75.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ....+.+.+++
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 244 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVK---TTLLHRGDLIL---RNFD---------YD-----------LRQLLNDAMVA 244 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCccc---cccC---------HH-----------HHHHHHHHHHH
Confidence 47899999999999999999998876 99999886311 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.|.+++.+.. .+.+.+|+++.+|.+|+|+|.+|..
T Consensus 245 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~ 290 (484)
T 3o0h_A 245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT 290 (484)
T ss_dssp HTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCC
Confidence 8999999999999986543 4677888889999999999998853
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=6.3e-05 Score=77.04 Aligned_cols=56 Identities=29% Similarity=0.474 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+.+.+.+++.|++++.+ +|+++..++++.+..|++.+|+++.+|.||.|.|.....
T Consensus 169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 44556667789999999 899998755666678899999899999999999976544
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-05 Score=80.71 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=71.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCcc--c----------CHHHHHHHHHHH-HhcCcEEEcCCcE
Q 012545 191 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL--F----------TADIAAFYEGYY-ANKGIKIIKGTVA 255 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~~--~----------~~~~~~~~~~~l-~~~GV~v~~~~~v 255 (461)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+...... + ..++.....+.+ ++.|++++.+++|
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v 116 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV 116 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence 5799999999999999999986 89999999887531100 0 011111223445 4459999999999
Q ss_pred EEEEecCCCCEEEEEe-CCCc--EEecCEEEEccCCCCChh
Q 012545 256 VGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~-~~G~--~i~aD~vi~a~G~~p~~~ 293 (461)
+.++. +.....+.. .+|+ ++.+|.+|+|+|.+|...
T Consensus 117 ~~i~~--~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p 155 (480)
T 3cgb_A 117 TKVDT--EKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMP 155 (480)
T ss_dssp EEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEC--CCCEEEEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence 99976 333334444 4576 799999999999877643
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=8.3e-06 Score=85.64 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=32.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-----cCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAK-----QGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~-----~g~~~~~V~vie~~~~ 42 (461)
.+||+||||||+|+++|..|++ .|++ |+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~---v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCC---EEEEeCCCC
Confidence 5799999999999999999999 8987 999999764
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2e-05 Score=79.29 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=72.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... + .. .. ....+.+.+++
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~-~~---------~~-----------~~~~l~~~l~~ 228 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSK---VTVLARNTLFF---R-ED---------PA-----------IGEAVTAAFRA 228 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT---T-SC---------HH-----------HHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEEECCccC---C-CC---------HH-----------HHHHHHHHHHh
Confidence 47899999999999999999999876 99999986311 0 00 00 01234567788
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.++.. +.+. +.++++|.+|+|+|.+|..
T Consensus 229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~ 273 (467)
T 1zk7_A 229 EGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNT 273 (467)
T ss_dssp TTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred CCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence 99999999999999765543 4454 4579999999999998853
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.4e-05 Score=70.44 Aligned_cols=168 Identities=15% Similarity=0.076 Sum_probs=105.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCc---------------------------------c----c
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR---------------------------------L----F 230 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~---------------------------------~----~ 230 (461)
...|+|||+|..|+.+|..|++. |.+|+++++.+.+... + .
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~ 158 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH 158 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence 45799999999999999999997 9999999987543200 0 0
Q ss_pred CHHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCC----------------C--CEEEEEeC--------------CCcEE
Q 012545 231 TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNAD----------------G--EVKEVKLK--------------DGRTL 277 (461)
Q Consensus 231 ~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~----------------g--~~~~v~~~--------------~G~~i 277 (461)
..++.+.+.+.+++ .|++++.++.++++..+++ + ++.+|... ++.++
T Consensus 159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i 238 (344)
T 3jsk_A 159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI 238 (344)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence 23444566666777 5999999999999876432 3 56666552 23579
Q ss_pred ecCEEEEccCCCCCh-hhh-----hccccc-CCCcEEeCCC-------CCC--CCCCEEEeCcccccCccccCcceeecc
Q 012545 278 EADIVVVGVGGRPLI-SLF-----KGQVAE-NKGGIETDDF-------FKT--SADDVYAVGDVATFPMKLYREMRRVEH 341 (461)
Q Consensus 278 ~aD~vi~a~G~~p~~-~~~-----~~~~~~-~~g~i~vd~~-------~~t--~~~~vya~GD~~~~~~~~~~~~~~~~~ 341 (461)
.++.||.|+|..... .++ ..++.. -.|.-..+-. -.| -+|++|++|=.+.--. |.++--+.
T Consensus 239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~~---g~~rmgp~ 315 (344)
T 3jsk_A 239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEID---GANRMGPT 315 (344)
T ss_dssp ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHHH---TCEECCSC
T ss_pred EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhhc---CCCCCCcc
Confidence 999999999977652 111 122221 1222122210 012 2799999998775321 11110022
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 012545 342 VDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 342 ~~~A~~~g~~aa~~i~~~~ 360 (461)
...=..+|+.||+.|+..+
T Consensus 316 fg~m~~sg~~~a~~~~~~~ 334 (344)
T 3jsk_A 316 FGAMALSGVKAAHEAIRVF 334 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cceeeecCHHHHHHHHHHH
Confidence 2223467888888887543
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.5e-06 Score=82.93 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=35.4
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
|+++.+||+|||||++||+||..|++.|++ |+|+|+++..
T Consensus 1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~~ 40 (453)
T 2yg5_A 1 VPTLQRDVAIVGAGPSGLAAATALRKAGLS---VAVIEARDRV 40 (453)
T ss_dssp -CEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCCC
Confidence 666678999999999999999999999987 9999998754
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=9.8e-06 Score=82.18 Aligned_cols=101 Identities=13% Similarity=0.270 Sum_probs=69.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC---------cccCH-HHHHHHHHHH--HhcCcEEEcCCcEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------RLFTA-DIAAFYEGYY--ANKGIKIIKGTVAVG 257 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---------~~~~~-~~~~~~~~~l--~~~GV~v~~~~~v~~ 257 (461)
.++|+|||+|+.|+.+|..|.+.+.+||+|++.++..- ..+++ ++...+.+.+ ++.+++++.+ ++++
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~ 120 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATS 120 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEE
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEE
Confidence 35899999999999999999999999999999875321 01111 1111222332 3457888754 6888
Q ss_pred EEecCCCCEEEEEe------------------CCCcEEecCEEEEccCCCCChh
Q 012545 258 FTTNADGEVKEVKL------------------KDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 258 i~~~~~g~~~~v~~------------------~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
|+. +.+...+.. .++.++++|.+|+|+|.+|+..
T Consensus 121 ID~--~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~ 172 (502)
T 4g6h_A 121 INP--DRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF 172 (502)
T ss_dssp EEG--GGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred EEh--hhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence 876 333333322 3567899999999999988764
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.2e-05 Score=79.45 Aligned_cols=98 Identities=12% Similarity=0.211 Sum_probs=71.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ......+.+++
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~d---------~~-----------~~~~l~~~l~~ 227 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVI---VKVFGRSGSVA---NLQD---------EE-----------MKRYAEKTFNE 227 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCE---EEEECCTTCCT---TCCC---------HH-----------HHHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCccc---ccCC---------HH-----------HHHHHHHHHhh
Confidence 47899999999999999999999876 99999986421 0000 00 01123445555
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcC--CC--cEEecCEEEEccCCCcccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~liiAtG~~~~~~ 129 (461)
. ++++.++.+.+++.+... +.+. +| +++.+|.+++|+|.+|..+
T Consensus 228 ~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~ 277 (492)
T 3ic9_A 228 E-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVD 277 (492)
T ss_dssp T-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCS
T ss_pred C-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCC
Confidence 6 999999999999765433 4442 56 6799999999999998543
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-05 Score=81.26 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHh
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE 80 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~----g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
..+++|||||+.|+.+|..|++. |.+ |+++++.+.. ..+ .++. .......+
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~---V~~v~~~~~~-~~~--------------~l~~-------~~~~~~~~ 234 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTE---VIQLFPEKGN-MGK--------------ILPE-------YLSNWTME 234 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCE---EEEECSSSST-TTT--------------TSCH-------HHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCE---EEEEecCccc-ccc--------------cCCH-------HHHHHHHH
Confidence 46899999999999999998873 444 9999887421 000 0000 00123456
Q ss_pred HHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCcc
Q 012545 81 WYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.+++.||+++.++.+.+++.+.. .+.+.+|+++++|.+|+|+|.+|.
T Consensus 235 ~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn 283 (493)
T 1m6i_A 235 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN 283 (493)
T ss_dssp HHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred HHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence 67789999999999999875443 467788889999999999999884
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.7e-05 Score=79.84 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=71.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------------------------------cCH-H------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------FTA-D------ 233 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------------------------------~~~-~------ 233 (461)
..|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+ ++- .
T Consensus 5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
T 3l8k_A 5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD 84 (466)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence 369999999999999999999999999999766542110 000 0
Q ss_pred ----HH--HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcE--EecCEEEEccCCCCChh
Q 012545 234 ----IA--AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT--LEADIVVVGVGGRPLIS 293 (461)
Q Consensus 234 ----~~--~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~--i~aD~vi~a~G~~p~~~ 293 (461)
+. ..+.+.+++.|++++.+ ++..+.. + ...|.+.+|++ +.+|.+|+|+|.+|...
T Consensus 85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~--~--~~~V~~~~g~~~~~~~d~lviAtG~~p~~p 147 (466)
T 3l8k_A 85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKDP--T--HVIVKTDEGKEIEAETRYMIIASGAETAKL 147 (466)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEET--T--EEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred hheeccccchHHHHHHhCCCEEEEe-EEEEecC--C--eEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence 01 34445566789999877 5666642 2 35778888888 99999999999877643
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=81.06 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC-CCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
...+.+.+.+.+++.|++++++++|++|..+. ++++..|.+ +|+++.||.||+++|..|.
T Consensus 241 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 241 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 35788889999999999999999999998742 566667777 5788999999999997653
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.1e-05 Score=77.81 Aligned_cols=97 Identities=22% Similarity=0.195 Sum_probs=74.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ....+.+.+++
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vt~v~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 223 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVK---TTLIYRGKEIL---SRFD---------QD-----------MRRGLHAAMEE 223 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---cccC---------HH-----------HHHHHHHHHHH
Confidence 57899999999999999999998876 99999986311 0000 00 01234566788
Q ss_pred cCcEEEcCCeEEEEeCCC-C--EEE-cCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS-K--TLL-SATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-~--~v~-~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.+. . .+. +.+|+ +.+|.+|+|+|.+|..
T Consensus 224 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~ 270 (463)
T 4dna_A 224 KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNT 270 (463)
T ss_dssp TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESC
T ss_pred CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCC
Confidence 999999999999998653 2 577 77887 9999999999998854
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=3.7e-05 Score=77.49 Aligned_cols=98 Identities=15% Similarity=0.270 Sum_probs=72.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ......+.+++
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~~---------~~-----------~~~~l~~~l~~ 233 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFL---PAVD---------EQ-----------VAKEAQKILTK 233 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC---cccC---------HH-----------HHHHHHHHHHh
Confidence 47899999999999999999999876 99999986421 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCC---cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+.. .+.+.++ +++.+|.+++|+|.+|..
T Consensus 234 ~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~ 282 (476)
T 3lad_A 234 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT 282 (476)
T ss_dssp TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence 9999999999999986553 3445443 578999999999998853
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=8.3e-06 Score=82.92 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.+++.|++++++++|++|.. ++. .+++.+|+++.||.||+++..
T Consensus 221 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~--~~~--~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 221 TGGIWIAVANTLPKEKTRFGEKGKVTKVNA--NNK--TVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHHHTSCGGGEEESGGGCEEEEET--TTT--EEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHHHhcCeeeecceEEEEEEc--cCC--EEEEcCCCEEECCEEEECCCH
Confidence 356778888888999999999999999987 332 467899999999999998764
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.6e-05 Score=78.74 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=70.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++....+. .. .. ......+.+++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~~----~d---------~~-----------~~~~l~~~l~~ 239 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYE---PTVMVRSIVLRG----FD---------QQ-----------MAELVAASMEE 239 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCSSTT----SC---------HH-----------HHHHHHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCE---EEEEeCCCCCcc----cC---------HH-----------HHHHHHHHHHh
Confidence 46899999999999999999999876 999988532110 00 00 01234566788
Q ss_pred cCcEEEcCCeEEEEeCCC-C--EEEcCCCc-----EEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS-K--TLLSATGL-----IFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-~--~v~~~~~~-----~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++... . .+.+.++. ++.+|.+++|+|.+|..
T Consensus 240 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~ 291 (483)
T 3dgh_A 240 RGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLV 291 (483)
T ss_dssp TTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECC
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCc
Confidence 999999999999987533 2 35554433 78999999999998853
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=5.6e-05 Score=74.57 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=75.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCccCCcc----c----------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRL----F---------------------------------- 230 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~~~----~---------------------------------- 230 (461)
..+|+|||+|+.|+.+|..|++.|.+ |+++++.+.+.+.. +
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g 83 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 83 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence 35799999999999999999999999 99999876431100 0
Q ss_pred ----------------------CHHHHHHHHHHHHh-cC-cEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCE
Q 012545 231 ----------------------TADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADI 281 (461)
Q Consensus 231 ----------------------~~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~ 281 (461)
...+.+.+.+.+++ .| ++++++++|++++. +++ ..+++.+ | +++.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~--v~v~~~~~~~g~~~~~~ad~ 160 (410)
T 3c96_A 84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG--RVLIGARDGHGKPQALGADV 160 (410)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT--EEEEEEEETTSCEEEEEESE
T ss_pred CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc--cEEEEecCCCCCceEEecCE
Confidence 01344556666665 36 68999999999987 454 3456554 7 5799999
Q ss_pred EEEccCCCCChh
Q 012545 282 VVVGVGGRPLIS 293 (461)
Q Consensus 282 vi~a~G~~p~~~ 293 (461)
||.|.|......
T Consensus 161 vV~AdG~~S~vR 172 (410)
T 3c96_A 161 LVGADGIHSAVR 172 (410)
T ss_dssp EEECCCTTCHHH
T ss_pred EEECCCccchhH
Confidence 999999876553
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.84 E-value=4e-05 Score=77.60 Aligned_cols=98 Identities=18% Similarity=0.291 Sum_probs=72.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+.... ... .. ......+.+++
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~---~~d---------~~-----------~~~~l~~~l~~ 251 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAK---VTVVEFLDTILG---GMD---------GE-----------VAKQLQRMLTK 251 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSSS---SSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEeccccccc---cCC---------HH-----------HHHHHHHHHHh
Confidence 47899999999999999999999876 999998864210 000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCC---C--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSAT---G--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~---~--~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+... +.+.+ | +++++|.+|+|+|.+|..
T Consensus 252 ~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 302 (491)
T 3urh_A 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST 302 (491)
T ss_dssp TTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred CCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence 89999999999998765543 44432 4 579999999999998854
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00012 Score=74.15 Aligned_cols=101 Identities=23% Similarity=0.390 Sum_probs=78.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 91 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF 91 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence 457999999999999999999999999999986432100
Q ss_pred -----cc-------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc---EEecCEEEEccCCCCCh
Q 012545 229 -----LF-------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR---TLEADIVVVGVGGRPLI 292 (461)
Q Consensus 229 -----~~-------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~---~i~aD~vi~a~G~~p~~ 292 (461)
.. ...+.+.+.+.+++.|++++++++|++++.++++ ..+++.++. ++.+|.||.|.|.+...
T Consensus 92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~~a~~vVgADG~~S~V 168 (499)
T 2qa2_A 92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH--VVVEVEGPDGPRSLTTRYVVGCDGGRSTV 168 (499)
T ss_dssp GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC--EEEEEECSSCEEEEEEEEEEECCCTTCHH
T ss_pred ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE--EEEEEEcCCCcEEEEeCEEEEccCcccHH
Confidence 00 1245566777788889999999999999985444 357777764 79999999999987543
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.5e-05 Score=79.01 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+.+.+.+..+..+.+++++++|++|..+ ++.+ .|++.+|+ +.||.||+|++.
T Consensus 204 g~~~l~~~l~~~l~~~v~~~~~V~~i~~~-~~~v-~v~~~~g~-~~ad~Vv~a~~~ 256 (424)
T 2b9w_A 204 GTQAMFEHLNATLEHPAERNVDITRITRE-DGKV-HIHTTDWD-RESDVLVLTVPL 256 (424)
T ss_dssp CHHHHHHHHHHHSSSCCBCSCCEEEEECC-TTCE-EEEESSCE-EEESEEEECSCH
T ss_pred hHHHHHHHHHHhhcceEEcCCEEEEEEEE-CCEE-EEEECCCe-EEcCEEEECCCH
Confidence 34455555556666788999999999874 3444 58888884 999999999985
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.83 E-value=3.5e-05 Score=77.68 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ......+.+++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~d---------~~-----------~~~~~~~~l~~ 240 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVL---RSFD---------SM-----------ISTNCTEELEN 240 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCe---EEEEEeCCccc---cccC---------HH-----------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999875311 0000 00 01234566788
Q ss_pred cCcEEEcCCeEEEEeCCC-C---EEEcCC-------CcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS-K---TLLSAT-------GLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-~---~v~~~~-------~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++... . .+.+.+ ++++.+|.+++|+|.+|..
T Consensus 241 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~ 295 (478)
T 3dk9_A 241 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT 295 (478)
T ss_dssp TTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence 999999999999987542 2 244543 2578999999999998854
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-05 Score=78.17 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVA 43 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~~~ 43 (461)
++.+||+|||||++|++||..|++. |++ |+|+|+++..
T Consensus 5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~---v~v~E~~~~~ 43 (399)
T 1v0j_A 5 TARFDLFVVGSGFFGLTIAERVATQLDKR---VLVLERRPHI 43 (399)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHHSCCC---EEEECSSSSS
T ss_pred cccCCEEEECCCHHHHHHHHHHHHhCCCC---EEEEeCCCCC
Confidence 3479999999999999999999998 886 9999999754
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1e-05 Score=82.52 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=33.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~~~ 43 (461)
+.+||+|||||++||+||..|++.| ++ |+|+|+.+..
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~---V~VlEa~~ri 44 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQD---CLVLEARDRV 44 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCCS---EEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCCC---EEEEeCCCCC
Confidence 4589999999999999999999999 76 9999999764
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=6.1e-05 Score=76.15 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=70.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++....+. .. .. ......+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~l~~----~d---------~~-----------~~~~l~~~l~~ 237 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLD---TTVMMRSIPLRG----FD---------QQ-----------MSSLVTEHMES 237 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT----SC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEcCccccc----CC---------HH-----------HHHHHHHHHHH
Confidence 46899999999999999999999876 999998632110 00 00 01234566788
Q ss_pred cCcEEEcCCeEEEEeCC-CC--EEEcCC---Cc--EEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIA-SK--TLLSAT---GL--IFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-~~--~v~~~~---~~--~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.++... .. .+.+.+ ++ ++.+|.+++|+|.+|..
T Consensus 238 ~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~ 289 (488)
T 3dgz_A 238 HGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET 289 (488)
T ss_dssp TTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESC
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCccc
Confidence 99999999888888642 22 344433 44 47899999999998854
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=73.74 Aligned_cols=102 Identities=22% Similarity=0.345 Sum_probs=78.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------c-----------------
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------L----------------- 229 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------~----------------- 229 (461)
....|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 89 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID 89 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence 3467999999999999999999999999999986432100 0
Q ss_pred -------------c-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc---EEecCEEEEccCCCCCh
Q 012545 230 -------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR---TLEADIVVVGVGGRPLI 292 (461)
Q Consensus 230 -------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~---~i~aD~vi~a~G~~p~~ 292 (461)
+ ...+.+.+.+.+++.|++++++++|++++.++++ ..+++.++. ++.+|.||.|.|.+...
T Consensus 90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~~a~~vVgADG~~S~V 167 (500)
T 2qa1_A 90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAG--VTVEVRGPEGKHTLRAAYLVGCDGGRSSV 167 (500)
T ss_dssp GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECCCTTCHH
T ss_pred cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe--EEEEEEcCCCCEEEEeCEEEECCCcchHH
Confidence 0 0244566777788889999999999999874443 357776664 79999999999987543
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.2e-05 Score=78.33 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=70.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc---------c---CHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------F---TADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~---------~---~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
.+|+|||+|+.|+.+|..|++. .+|+++++.+.+.... + ..++...+.+.+ +.|++++.++++.++
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i 186 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV 186 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence 4799999999999999999999 9999999987652110 1 223333444444 669999999999888
Q ss_pred EecCCCCEEEEEeCCCc--EEecCEEEEccCCCCCh
Q 012545 259 TTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLI 292 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~--~i~aD~vi~a~G~~p~~ 292 (461)
..+ +........++++ ++.+|.+|+|+|..|..
T Consensus 187 ~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~ 221 (493)
T 1y56_A 187 FDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDST 221 (493)
T ss_dssp EEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECC
T ss_pred EcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccC
Confidence 762 3332222224554 68999999999987754
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.1e-05 Score=79.56 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=34.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
+.+.+||+|||||++||+||..|++.|++ |+|+|+.+..
T Consensus 8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~---v~v~E~~~~~ 46 (489)
T 2jae_A 8 VKGSHSVVVLGGGPAGLCSAFELQKAGYK---VTVLEARTRP 46 (489)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSS
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCC
Confidence 34578999999999999999999999986 9999999764
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.6e-05 Score=79.01 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++||+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~---V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVD---VTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCE---EEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCe---EEEEcCCC
Confidence 47999999999999999999999987 99999986
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.1e-05 Score=74.72 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCcEEEcCCcEE---------EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 234 IAAFYEGYYANKGIKIIKGTVAV---------GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 234 ~~~~~~~~l~~~GV~v~~~~~v~---------~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+.+.+.+.+++.|++++.+++|+ ++..+ ++.+ .|++.+| ++.||.||+|+|...
T Consensus 174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccH
Confidence 55566777888999999999999 87652 3444 6777776 899999999999764
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=3e-05 Score=75.86 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=33.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..+||+|||||++|+++|..|++.|.+ |+|+|+.+..
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~ 64 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQR---VLIVDRRPHI 64 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCc---eEEEeccCCC
Confidence 468999999999999999999999887 9999998653
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.7e-05 Score=75.50 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC-CC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-AV 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~-~~ 42 (461)
...+||+|||||++||+||..|++.|++ |+|+|++ +.
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~---V~VlE~~~~~ 79 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHD---VTILEANANR 79 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCE---EEEECSCSSC
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccc
Confidence 3468999999999999999999999986 9999998 65
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=2e-05 Score=79.28 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
..+.+.+.+.+++.|++++++++|++|..++++ ...|++ ++.++.||.||+|++.
T Consensus 234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~v~~-~~~~~~ad~vv~a~p~ 288 (477)
T 3nks_A 234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEG-RWKVSL-RDSSLEADHVISAIPA 288 (477)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEECGGG-CEEEEC-SSCEEEESEEEECSCH
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCc-eEEEEE-CCeEEEcCEEEECCCH
Confidence 467888889999999999999999999874333 245665 4558999999999984
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00029 Score=71.40 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 234 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 234 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
+...+.+.+++.|++++.+++|+++..+ +.+..|++ .+|+ ++.+|.||.|+|...
T Consensus 151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~--~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLTRTRATSARRE--NGLWIVEAEDIDTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEE--TTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEe--CCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence 4456667778899999999999999873 35567777 3675 799999999999764
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00012 Score=80.04 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-------c----CHHHHHHHHHHHHhc-CcEEEcCCcEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------F----TADIAAFYEGYYANK-GIKIIKGTVAVG 257 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------~----~~~~~~~~~~~l~~~-GV~v~~~~~v~~ 257 (461)
..+|+|||+|+.|+.+|..+++.|.+|+++++.+.+.... + ..++...+.+.+.+. +++++.+++|.+
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~ 207 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG 207 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence 3579999999999999999999999999999876542111 1 234445555666664 999999999988
Q ss_pred EEecCCCCEEEEEe---------------CCCcEEecCEEEEccCCCCCh
Q 012545 258 FTTNADGEVKEVKL---------------KDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 258 i~~~~~g~~~~v~~---------------~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+.. ++.+..+.. .++.++.+|.+|+|||.+|..
T Consensus 208 i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~ 255 (965)
T 2gag_A 208 SYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP 255 (965)
T ss_dssp EET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred eec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence 864 332222211 112368999999999987654
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=3.8e-05 Score=77.55 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=33.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~~~ 43 (461)
+.+||+|||||++|++||..|++.| .+ |+|+|+++..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~---v~v~E~~~~~ 45 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKN---WHLYECNDTP 45 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCS---EEEEESSSSS
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEeCCCCC
Confidence 4689999999999999999999998 45 9999999753
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0003 Score=71.73 Aligned_cols=56 Identities=13% Similarity=0.310 Sum_probs=44.4
Q ss_pred HHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 236 AFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 236 ~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+.+.+.+++ .|++++.+ +|+++..++++.+..|++.+|.++.+|.||.|.|.....
T Consensus 179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 344555666 89999999 699998755666678888888789999999999986543
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=1.7e-05 Score=79.52 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccC--------Ccc-cCHHHHHHHHHHHHhcCcEEEcCCcEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM--------PRL-FTADIAAFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~--------~~~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
.+.+|+|||+|+.|+.+|..|.+.| .+|+++++.+.+. +.. ...++...+.+.+++.||+++.++.+.
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~- 83 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG- 83 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence 3578999999999999999999988 9999999987654 211 123566777888889999999987652
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
. .|.+.+. ++.+|.||+|||..|
T Consensus 84 -----~----~V~~~~~-~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 -----R----DVTVQEL-QDAYHAVVLSYGAED 106 (460)
T ss_dssp -----T----TBCHHHH-HHHSSEEEECCCCCE
T ss_pred -----e----EEEeccc-eEEcCEEEEecCcCC
Confidence 1 1333332 478999999999875
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00016 Score=73.67 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=66.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++....+. .. .. ......+.+++
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~l~~----~d---------~~-----------~~~~~~~~l~~ 262 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG----FD---------QD-----------MANKIGEHMEE 262 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT----SC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEeccccccc----CC---------HH-----------HHHHHHHHHHH
Confidence 46799999999999999999999876 999998532110 00 00 01234566788
Q ss_pred cCcEEEcCCeEEEEeCCC----C--EEE--cCCC-c--EEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS----K--TLL--SATG-L--IFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~----~--~v~--~~~~-~--~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+..+.... . .+. ..++ + ++.+|.+++|+|.+|+.
T Consensus 263 ~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~ 317 (519)
T 3qfa_A 263 HGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT 317 (519)
T ss_dssp TTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESC
T ss_pred CCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccC
Confidence 999999997766664311 2 222 2344 2 56899999999998854
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.62 E-value=3.4e-05 Score=78.33 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=33.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
+.+||+|||||++||+||..|++.|++ |+|+|+.+..
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~~ 48 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEGKA 48 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEeCCCC
Confidence 468999999999999999999999986 9999999764
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.5e-05 Score=86.04 Aligned_cols=94 Identities=18% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.++|+|||+|+.|+.+|..|++.|. +|+++++.+.+.. . .++.+..++..+.+++.||+++.++.+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE--- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence 4689999999999999999999999 7999999765421 1 13556677777889999999999877631
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCC-CCCh
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI 292 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~-~p~~ 292 (461)
. .+++++++++.+|.||+|+|. +|..
T Consensus 264 --~----~v~~~~~~~~~~d~vvlAtGa~~p~~ 290 (1025)
T 1gte_A 264 --N----EITLNTLKEEGYKAAFIGIGLPEPKT 290 (1025)
T ss_dssp --T----SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred --c----eEEhhhcCccCCCEEEEecCCCCCCC
Confidence 1 234445556789999999997 4654
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00036 Score=70.13 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=71.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------------c------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------------R------------------------------ 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------------~------------------------------ 228 (461)
.|+|||+|..|+-+|..+++.|.+|+++++...-.. .
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 379999999999999999999999999988621000 0
Q ss_pred -----------------------------------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-
Q 012545 229 -----------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK- 272 (461)
Q Consensus 229 -----------------------------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~- 272 (461)
.....+.+.+.+.+++.||+++.++++ ++.. +++++.++...
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~-~~~~v~Gv~v~~ 158 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRV-KDGKVTGFVTEK 158 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEE-ETTEEEEEEETT
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEE-eCCEEEEEEEEe
Confidence 001133445566667789999999999 9976 35666566553
Q ss_pred CCcEEecCEEEEccCCCCCh
Q 012545 273 DGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 273 ~G~~i~aD~vi~a~G~~p~~ 292 (461)
++.++.+|.||+|+|..+..
T Consensus 159 ~~g~~~a~~VVlAtGg~~~~ 178 (472)
T 2e5v_A 159 RGLVEDVDKLVLATGGYSYL 178 (472)
T ss_dssp TEEECCCSEEEECCCCCGGG
T ss_pred CCCeEEeeeEEECCCCCccc
Confidence 22357899999999976643
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.1e-05 Score=77.05 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g--~~~~~V~vie~~~~~ 43 (461)
++||+|||||++|++||.+|++.| .+ |+|+|+++..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~---v~v~E~~~~~ 41 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLN---ITLLEAGERL 41 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSE---EEEECSSSSS
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCC---EEEEECCCCC
Confidence 689999999999999999999998 55 9999998653
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.7e-05 Score=77.98 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=72.2
Q ss_pred CCeEEEEc--CChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 5 SFKYVILG--GGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 5 ~~dvvIIG--~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
..+|+||| +|..|+.+|..|++.|.+ |+++++.+... ..... .. ....+.+.+
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~---Vtlv~~~~~l~-------~~~~~----~~-----------~~~~l~~~l 577 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYE---VSIVTPGAQVS-------SWTNN----TF-----------EVNRIQRRL 577 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCE---EEEEESSSSTT-------GGGGG----GT-----------CHHHHHHHH
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCe---eEEEecccccc-------ccccc----ch-----------hHHHHHHHH
Confidence 45799999 999999999999999876 99999885421 00000 00 012345677
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEc---CCCcEEecCEEEEccCCCc
Q 012545 83 KEKGIELILSTEIVRADIASKTLLS---ATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~---~~~~~~~~d~liiAtG~~~ 126 (461)
++.||+++.++.|.+++.+...+.. .+++++++|.+|+|+|.+|
T Consensus 578 ~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p 624 (690)
T 3k30_A 578 IENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLP 624 (690)
T ss_dssp HHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEE
T ss_pred HHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCC
Confidence 8899999999999999876544442 2456799999999999988
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.7e-05 Score=74.09 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=30.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC------CCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQG------VKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g------~~~~~V~vie~~~ 41 (461)
+||+|||||++|+++|++|+++| .+ |+|+|++.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~---V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD---IKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE---EEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCce---EEEEECCC
Confidence 49999999999999999999997 55 99999986
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.57 E-value=4.8e-05 Score=74.27 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=31.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA 43 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~~ 43 (461)
+||+|||||++|+++|..|++. |++ |+|+|+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~---V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWA---IDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSE---EEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCC---EEEEECCCCC
Confidence 4899999999999999999999 876 9999998653
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=3.5e-05 Score=79.40 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~ 289 (461)
+..+...+.+.+++.|++++.+++|+++.. +++.+..|++. +|+ ++.||.||+|+|..
T Consensus 187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~-~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w 249 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLY-EGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW 249 (571)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred hHHHHHHHHHHHHHcCCeEEeccEEEEEEE-eCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence 556777777888899999999999999987 34555667653 343 79999999999954
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.53 E-value=8e-05 Score=74.03 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
...+.+.+.+.+++.|++++++++|++|.. +++++..|. .+|+++.||.||+|+|..+.
T Consensus 233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVK-SEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp TTHHHHHHHHHHHHHTCCCBCSCCCCEEEE-ETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEE-eCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence 457888888889999999999999999987 355555565 47889999999999998764
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00032 Score=72.80 Aligned_cols=97 Identities=11% Similarity=0.217 Sum_probs=67.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||..|+.+|..|++.|.+ |+++++....+ .... .+ .....+.+++
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~----~~d~---------~~-----------~~~~~~~l~~ 338 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGD---VTVMVRSILLR----GFDQ---------QM-----------AEKVGDYMEN 338 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSST----TSCH---------HH-----------HHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEECCcCcC----cCCH---------HH-----------HHHHHHHHHh
Confidence 46899999999999999999999876 99999872111 0000 00 1233456778
Q ss_pred cCcEEEcCCeEEEEeC------CC---CE--EE--cCCCcEEe--cCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADI------AS---KT--LL--SATGLIFK--YQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~------~~---~~--v~--~~~~~~~~--~d~liiAtG~~~~~ 128 (461)
.||+++.++.+..+.. +. .. +. ..+|+++. +|.+++|+|.+|+.
T Consensus 339 ~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~ 397 (598)
T 2x8g_A 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL 397 (598)
T ss_dssp TTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECG
T ss_pred CCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcccc
Confidence 8999999987776632 11 22 22 34666554 99999999998853
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=1.8e-05 Score=79.16 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=68.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHH-C------CCcEEEEccCCccCC--------c-ccCHHHHHHHHHHHHhcCcEEEcCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKI-N------NIDVSMVYPEPWCMP--------R-LFTADIAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~-~------g~~Vtli~~~~~~~~--------~-~~~~~~~~~~~~~l~~~GV~v~~~~ 253 (461)
+.+|+|||+|+.|+.+|..|.+ . +.+|+++++.+.+.. . ....++...+.+.+++.|++++.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v 82 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 82 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence 5689999999999999999999 7 999999999876532 1 1234566777788888999999885
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 254 ~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.+ +. .|+++++ ++.+|.||+|+|..
T Consensus 83 ~v-------~~---~v~~~~~-~~~~d~lViAtG~~ 107 (456)
T 1lqt_A 83 VV-------GE---HVQPGEL-SERYDAVIYAVGAQ 107 (456)
T ss_dssp CB-------TT---TBCHHHH-HHHSSEEEECCCCC
T ss_pred EE-------CC---EEEECCC-eEeCCEEEEeeCCC
Confidence 43 11 2444455 57899999999986
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=6.8e-05 Score=75.46 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=32.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..+||+|||||++|++||..|++.|++ |+|+|+++..
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~---v~v~E~~~~~ 51 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTD---AVLLESSARL 51 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCC---EEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCCC
Confidence 368999999999999999999999987 9999999753
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00011 Score=77.28 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=66.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----c-----CHHHHHHHHHHHHhcCcEEEcCCcEEEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----F-----TADIAAFYEGYYANKGIKIIKGTVAVGFT 259 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-----~-----~~~~~~~~~~~l~~~GV~v~~~~~v~~i~ 259 (461)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.... + ..+..+.+.+.+++.||+++.++.++.
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-- 450 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-- 450 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence 5789999999999999999999999999999876542110 1 123445667788889999998876432
Q ss_pred ecCCCCEEEEEeCCCcEE-ecCEEEEccCCCCChh
Q 012545 260 TNADGEVKEVKLKDGRTL-EADIVVVGVGGRPLIS 293 (461)
Q Consensus 260 ~~~~g~~~~v~~~~G~~i-~aD~vi~a~G~~p~~~ 293 (461)
..+ .+|.||+|||.+|...
T Consensus 451 ---------------~~~~~~d~lviAtG~~p~~~ 470 (671)
T 1ps9_A 451 ---------------DQLQAFDETILASGIVPRTP 470 (671)
T ss_dssp ---------------SSSCCSSEEEECCCEEECCC
T ss_pred ---------------HHhhcCCEEEEccCCCcCCC
Confidence 123 8999999999887654
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=7.9e-05 Score=75.47 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=33.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..+||+|||||++|++||..|++.|.+ |+|+|+.+..
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~---v~vlE~~~~~ 68 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASERP 68 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCC
Confidence 468999999999999999999999986 9999998653
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=7.7e-05 Score=72.88 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=32.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
.+||+|||||++|+++|..|++.|++ |+|+|+++..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~~ 38 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRDHI 38 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCc---EEEEEecCCc
Confidence 58999999999999999999998876 9999998753
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=9.6e-05 Score=71.11 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=31.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+||+|||||+||+.||..|++.|.+ |+|+|+.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~---V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVP---VRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC---EEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCc---EEEEeccC
Confidence 6999999999999999999999987 99999986
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.47 E-value=7.9e-05 Score=75.40 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.+++.| ++++++++|++|...+++ ..|++.+|+++.||.||+|+|.
T Consensus 254 ~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~ 310 (495)
T 2vvm_A 254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA--ARVTARDGREFVAKRVVCTIPL 310 (495)
T ss_dssp HHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS--EEEEETTCCEEEEEEEEECCCG
T ss_pred HHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEECCCH
Confidence 4567888888899998 999999999999874333 4688889989999999999995
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.45 E-value=8.7e-05 Score=72.06 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=32.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
+||+|||||++|+++|..|++.|++ |+|+|+++..
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~~ 36 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKK---VLVIEKRNHI 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCC---EEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCC
Confidence 6999999999999999999999887 9999998653
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00084 Score=70.12 Aligned_cols=101 Identities=23% Similarity=0.233 Sum_probs=74.9
Q ss_pred CcEEEECCCHHHHHHHHHHHH-CCCcEEEEccCCccCC------------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMP------------------------------------------ 227 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~-~g~~Vtli~~~~~~~~------------------------------------------ 227 (461)
..|+|||+|+.|+-+|..|++ .|.+|+++++.+....
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 112 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG 112 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence 369999999999999999999 9999999997643210
Q ss_pred --c---------------------ccC-HHHHHHHHHHHHhcCc--EEEcCCcEEEEEecCC--CCEEEEEeC------C
Q 012545 228 --R---------------------LFT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNAD--GEVKEVKLK------D 273 (461)
Q Consensus 228 --~---------------------~~~-~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~--g~~~~v~~~------~ 273 (461)
. .++ ..+.+.+.+.+++.|+ +++++++|++++.+++ +....|++. +
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~ 192 (639)
T 2dkh_A 113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA 192 (639)
T ss_dssp STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence 0 000 2455667788888877 9999999999987442 222345554 5
Q ss_pred C--cEEecCEEEEccCCCCC
Q 012545 274 G--RTLEADIVVVGVGGRPL 291 (461)
Q Consensus 274 G--~~i~aD~vi~a~G~~p~ 291 (461)
| +++.+|.||.|.|.+..
T Consensus 193 G~~~~i~a~~vVgADG~~S~ 212 (639)
T 2dkh_A 193 GQIETVQARYVVGCDGARSN 212 (639)
T ss_dssp TCEEEEEEEEEEECCCTTCH
T ss_pred CCeEEEEeCEEEECCCcchH
Confidence 6 57999999999997543
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=68.24 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCC-------c------------------------cc-------
Q 012545 191 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMP-------R------------------------LF------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~-------~------------------------~~------- 230 (461)
-.|+|||+|..|+-+|..|++.| .+|+++++.+.... . ..
T Consensus 6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~ 85 (602)
T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY 85 (602)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 36999999999999999999999 99999988642100 0 00
Q ss_pred -----------------------------------------------CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecC
Q 012545 231 -----------------------------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNA 262 (461)
Q Consensus 231 -----------------------------------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~ 262 (461)
...+...+.+.+++.| |+++.++.++++.. +
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-~ 164 (602)
T 1kf6_A 86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-D 164 (602)
T ss_dssp HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-E
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-e
Confidence 0123344455566678 99999999999987 3
Q ss_pred CCCEEEEEe---CCCc--EEecCEEEEccCC
Q 012545 263 DGEVKEVKL---KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 263 ~g~~~~v~~---~~G~--~i~aD~vi~a~G~ 288 (461)
++++.++.. .+|+ ++.++.||+|+|.
T Consensus 165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 195 (602)
T ss_dssp TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 566655543 5776 6899999999996
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=66.60 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=69.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc------------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------ 228 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 106 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV 106 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence 36999999999999999999999999999986432100
Q ss_pred ---c---c---------------------C-HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--c
Q 012545 229 ---L---F---------------------T-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--R 275 (461)
Q Consensus 229 ---~---~---------------------~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~ 275 (461)
. + + ..+.+.+.+.+++. ++++++|++++.++++ ..+++.+ | .
T Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~--v~v~~~~~~~G~~~ 181 (549)
T 2r0c_A 107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH--VRATITDLRTGATR 181 (549)
T ss_dssp TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC--EEEEEEETTTCCEE
T ss_pred CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE--EEEEEEECCCCCEE
Confidence 0 0 0 12334555555555 8889999999875444 2355544 6 4
Q ss_pred EEecCEEEEccCCCCC
Q 012545 276 TLEADIVVVGVGGRPL 291 (461)
Q Consensus 276 ~i~aD~vi~a~G~~p~ 291 (461)
++.+|.||.|.|.+..
T Consensus 182 ~i~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 182 AVHARYLVACDGASSP 197 (549)
T ss_dssp EEEEEEEEECCCTTCH
T ss_pred EEEeCEEEECCCCCcH
Confidence 7999999999997654
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=74.52 Aligned_cols=35 Identities=43% Similarity=0.582 Sum_probs=31.7
Q ss_pred CCeEEEEcCChHHHHHHHHHH---H-cCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFA---K-QGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~---~-~g~~~~~V~vie~~~~ 42 (461)
.+||||||||+||++||.+|+ + .|.+ |+|+||...
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~---V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCe---EEEEeCcCC
Confidence 479999999999999999999 5 7877 999999864
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=69.96 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=68.2
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCcc----------------------C-Cc------------------
Q 012545 192 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWC----------------------M-PR------------------ 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~----------------------~-~~------------------ 228 (461)
+|+|||+|+.|+.+|..|++. |.+|+++++.+.+ . ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN 81 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence 689999999999999999999 9999999987543 0 00
Q ss_pred -------------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 229 -------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 229 -------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
....++.+.+.+.+++.|++++++++|++++. . +++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~-----------~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L-----------PLADYDLVVLANGVNHK 144 (381)
T ss_dssp SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C-----------CGGGCSEEEECCGGGGG
T ss_pred eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c-----------ccccCCEEEECCCCCch
Confidence 01145667778888888999999999988753 1 13589999999997653
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0019 Score=66.36 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
...|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4589999999999999999999999999999864
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=67.71 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
-.|+|||+|..|+-+|..+++ |.+|+++++.+.
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 469999999999999999999 999999998764
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0003 Score=70.62 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhc--------CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 233 DIAAFYEGYYANK--------GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 233 ~~~~~~~~~l~~~--------GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+.+.+.+.+.+. |++++++++|++|...+++ ..|++.+|+++.||.||+|++.
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~ 268 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG--VTVKTEDNSVYSADYVMVSASL 268 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSC--EEEEETTSCEEEESEEEECSCH
T ss_pred HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCc--EEEEECCCCEEEcCEEEEecCH
Confidence 4455555555544 6889999999999984433 4588999999999999999884
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00048 Score=73.11 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=69.1
Q ss_pred CCeEEEEc--CChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 5 SFKYVILG--GGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 5 ~~dvvIIG--~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
.++|+||| ||..|+.+|..|++.|.+ |+++++.+ .. ....... . .....+.+
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~---Vtlv~~~~-l~-------~~~~~~~---~------------~~~~~~~l 581 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVH-LA-------NYMHFTL---E------------YPNMMRRL 581 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSC-TT-------HHHHHTT---C------------HHHHHHHH
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCE---EEEEeccc-cc-------ccccccc---c------------HHHHHHHH
Confidence 46899999 999999999999999875 99999885 21 0000000 0 01345667
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEc--CCC-cE------------------EecCEEEEccCCCcc
Q 012545 83 KEKGIELILSTEIVRADIASKTLLS--ATG-LI------------------FKYQILVIATGSTVS 127 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~--~~~-~~------------------~~~d~liiAtG~~~~ 127 (461)
++.||+++.++.+.+++.+...+.. .++ ++ +.+|.+|+|+|..|.
T Consensus 582 ~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~ 647 (729)
T 1o94_A 582 HELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE 647 (729)
T ss_dssp HHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred HhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence 7899999999999999865433332 222 22 899999999999883
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00054 Score=68.41 Aligned_cols=101 Identities=16% Similarity=0.294 Sum_probs=64.3
Q ss_pred CCCEEEeCCHHHHHHHHHHHHh--cCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 166 AKNIFYLREIDDADKLVEAIKA--KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 166 ~~~v~~~~~~~~~~~l~~~l~~--~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
.+.++.....++..++.+.+.. .+.++++|+|||.+|..+|..|.+ ..+|.++++ +++-++.+.+.|.
T Consensus 209 gD~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~---------d~~r~~~la~~l~ 278 (461)
T 4g65_A 209 DDEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIER---------NLQRAEKLSEELE 278 (461)
T ss_dssp TCEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEES---------CHHHHHHHHHHCT
T ss_pred CCEEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEec---------CHHHHHHHHHHCC
Confidence 3456666666667777666643 256899999999999999999864 588999875 5666666666553
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+..++.+ |+.-..+-.+. .--.+|.+|.+|+-.
T Consensus 279 --~~~Vi~G----------D~td~~~L~ee-~i~~~D~~ia~T~~D 311 (461)
T 4g65_A 279 --NTIVFCG----------DAADQELLTEE-NIDQVDVFIALTNED 311 (461)
T ss_dssp --TSEEEES----------CTTCHHHHHHT-TGGGCSEEEECCSCH
T ss_pred --CceEEec----------cccchhhHhhc-CchhhcEEEEcccCc
Confidence 2223211 22100111111 135789999999964
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00019 Score=73.40 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..||+||||||.||+.+|.+|++ |.+ |+|+|+++.
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~~---VlvLEaG~~ 59 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KYK---VLVLERGSL 59 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TSC---EEEECSSBC
T ss_pred CcccEEEECccHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence 35899999999999999999999 876 999999964
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00042 Score=71.02 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---Cc--EE---ecCEEEEccCCCCChhhh
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TL---EADIVVVGVGGRPLISLF 295 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~--~i---~aD~vi~a~G~~p~~~~~ 295 (461)
++....++.|+++++++.|++|.. +++++.+|++.+ |+ ++ .++.||+|+|.-....++
T Consensus 201 ~l~~~~~~~~~~i~~~~~V~~i~~-~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL 266 (546)
T 1kdg_A 201 YLQTALARPNFTFKTNVMVSNVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL 266 (546)
T ss_dssp HHHHHHTCTTEEEECSCCEEEEEE-ETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHH
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHH
Confidence 444444456999999999999987 356788888865 64 34 789999999975544444
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00047 Score=73.30 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=35.0
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.|++++++++|++|+.++++ ..|++.+|+++.+|.||+|+.
T Consensus 542 ~gl~I~l~t~V~~I~~~~~~--v~V~~~~G~~i~Ad~VIvA~P 582 (776)
T 4gut_A 542 EGLDIQLKSPVQCIDYSGDE--VQVTTTDGTGYSAQKVLVTVP 582 (776)
T ss_dssp TTSCEESSCCEEEEECSSSS--EEEEETTCCEEEESEEEECCC
T ss_pred hCCcEEcCCeeEEEEEcCCE--EEEEECCCcEEEcCEEEECCC
Confidence 37899999999999974444 468889998999999999986
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0042 Score=64.33 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=38.2
Q ss_pred HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 239 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
.+.+++.||+++.++.++++.. +++++.+|.. .+|+ .+.++.||+|+|...
T Consensus 162 ~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 162 YGRSLRYDTSYFVEYFALDLLM-ENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHHTTSCCEEEETEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHhCCCEEEEceEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 3344557899999999999986 3677767665 4675 689999999999643
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0054 Score=65.19 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
.+|+|||+|..|+.+|..|.+.|.+|+++++.+++
T Consensus 337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 371 (776)
T 4gut_A 337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI 371 (776)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence 57999999999999999999999999999986654
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00044 Score=70.44 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=37.1
Q ss_pred HhcCcEEEcCCcEEEEEecCCCCEEEEEeCC--C-cEEecCEEEEccCCCCChhhh
Q 012545 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G-RTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 243 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--G-~~i~aD~vi~a~G~~p~~~~~ 295 (461)
.+.+++++.++.|.++.. +++++.+|...+ + ..+.++.||+|.|.--...++
T Consensus 222 ~r~nl~v~~~~~v~~i~~-~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LL 276 (526)
T 3t37_A 222 GRKNLTILTGSRVRRLKL-EGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALL 276 (526)
T ss_dssp TCTTEEEECSCEEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHH
T ss_pred CCCCeEEEeCCEEEEEEe-cCCeEEEEEEEecCceEEEeecceEEcccccCCcchh
Confidence 356799999999999987 456666666533 2 357789999999954444443
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00065 Score=71.26 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=33.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..+||+|||||++|++||..|++.|++ |+|+|+.+..
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~---v~~~e~~~~~ 142 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDRV 142 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCC
Confidence 358999999999999999999999987 9999998653
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00055 Score=70.31 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+.||+||||||.||+.+|.+|++.+. .+|+|||+++.
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~--~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPN--VTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTT--SCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCC--CcEEEEecCCC
Confidence 46999999999999999999999762 23999999975
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00084 Score=71.94 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=33.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..+||+|||||++||+||..|++.|++ |+|+|+.+..
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~~g~~---v~v~E~~~~~ 313 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDRV 313 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCcC
Confidence 357999999999999999999999987 9999998653
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0081 Score=62.67 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=38.5
Q ss_pred HHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 238 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 238 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
+.+.+++.||+++.++.|+++.. +++++.+|.. .+|+ .+.|+.||+|+|..
T Consensus 164 L~~~a~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~ 219 (660)
T 2bs2_A 164 VANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY 219 (660)
T ss_dssp HHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred HHHHHHhCCCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence 33445567899999999999986 4566666654 5675 48999999999953
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00084 Score=68.67 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=39.9
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---Cc--EEecC-EEEEccCCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEAD-IVVVGVGGR 289 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~--~i~aD-~vi~a~G~~ 289 (461)
.+...+++.|++++.++.|++|..++++++.+|++.+ |+ ++.|+ .||+|+|.-
T Consensus 214 ~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~ 272 (546)
T 2jbv_A 214 YIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAI 272 (546)
T ss_dssp HTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHH
T ss_pred HHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCcc
Confidence 3334444679999999999999984337788888744 53 68898 999999963
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00061 Score=71.19 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--------CCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQG--------VKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g--------~~~~~V~vie~~~ 41 (461)
.++|+|||||++||+||..|++.| ++ |+|+|+.+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~---V~v~E~~~ 97 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGID---VQIYEADP 97 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEE---EEEECCCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCce---EEEEeccC
Confidence 479999999999999999999988 54 99999987
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0013 Score=66.59 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+|++|||+|++|+.+|..|++.|.+ |+|+|++..
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCC
Confidence 468999999999999999999998877 999999864
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0013 Score=67.88 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=41.2
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCC---CCEEEEEeC--CCc--EEec-CEEEEccCCCCChhhh
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNAD---GEVKEVKLK--DGR--TLEA-DIVVVGVGGRPLISLF 295 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~---g~~~~v~~~--~G~--~i~a-D~vi~a~G~~p~~~~~ 295 (461)
...++.|+++++++.|++|..+++ +++.+|+.. +|+ ++.| +.||+|+|.-.+..++
T Consensus 239 ~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL 302 (587)
T 1gpe_A 239 PNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLIL 302 (587)
T ss_dssp TTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHH
T ss_pred HhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHH
Confidence 344567999999999999986432 467777764 564 5678 8999999976555544
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00095 Score=68.56 Aligned_cols=60 Identities=12% Similarity=0.213 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecC---CCCEEEEEeC--CCc--EEecC-EEEEccCCCCChhhh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNA---DGEVKEVKLK--DGR--TLEAD-IVVVGVGGRPLISLF 295 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~---~g~~~~v~~~--~G~--~i~aD-~vi~a~G~~p~~~~~ 295 (461)
..+...+++.++++++++.|++|..++ ++++.+|++. +|+ ++.|+ -||+|.|.--...++
T Consensus 231 ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL 298 (583)
T 3qvp_A 231 EWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL 298 (583)
T ss_dssp HHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHH
T ss_pred HHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHH
Confidence 344445567899999999999998743 5678888874 564 46675 699999965444444
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.01 Score=62.19 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHH-----CCCcEEEEccCC
Q 012545 192 KAVVVGGGYIGLELSAALKI-----NNIDVSMVYPEP 223 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~-----~g~~Vtli~~~~ 223 (461)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~ 46 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 46 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence 69999999999999999999 999999999764
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.013 Score=61.12 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHhc-Cc-EEEcCCcEEEEEecCC--CCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 240 GYYANK-GI-KIIKGTVAVGFTTNAD--GEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 240 ~~l~~~-GV-~v~~~~~v~~i~~~~~--g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
+.+++. || +++.++.++++..+++ +++.+|.. .+|+ .+.|+.||+|+|..
T Consensus 159 ~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~ 217 (643)
T 1jnr_A 159 EAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGA 217 (643)
T ss_dssp HHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred HHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcc
Confidence 344455 89 9999999999987433 27777653 5665 68999999999953
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0015 Score=66.08 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+|++|||+|++|+.+|..|++.|.+ |+|+|++..
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~ 39 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQL 39 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 468999999999999999999998877 999999874
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.01 Score=59.92 Aligned_cols=102 Identities=14% Similarity=0.173 Sum_probs=70.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CcEEEEccCCcc-------CCc----------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN--------------IDVSMVYPEPWC-------MPR---------------------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g--------------~~Vtli~~~~~~-------~~~---------------------- 228 (461)
.|+|||+|+.|+-+|..|.+.+ ....++++.+.+ ++.
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s 120 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT 120 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence 4899999999999999887642 345566665421 110
Q ss_pred -------------------c--cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCC------CEEEEEeCCC-----cE
Q 012545 229 -------------------L--FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG------EVKEVKLKDG-----RT 276 (461)
Q Consensus 229 -------------------~--~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g------~~~~v~~~~G-----~~ 276 (461)
. .-.++.++++...++.+..++++++|++++..+.+ ....|++.++ ++
T Consensus 121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~ 200 (501)
T 4b63_A 121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA 200 (501)
T ss_dssp HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence 0 01245666777777777789999999999863332 2356666544 36
Q ss_pred EecCEEEEccCCCCChh
Q 012545 277 LEADIVVVGVGGRPLIS 293 (461)
Q Consensus 277 i~aD~vi~a~G~~p~~~ 293 (461)
+.|+.||+|+|..|..+
T Consensus 201 ~~ar~vVlatG~~P~iP 217 (501)
T 4b63_A 201 RRTRKVVIAIGGTAKMP 217 (501)
T ss_dssp EEEEEEEECCCCEECCC
T ss_pred EEeCEEEECcCCCCCCC
Confidence 88999999999887754
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0013 Score=67.42 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEec---CC-CCEEEEEeCC--C-c--EEec-CEEEEccCCC
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTN---AD-GEVKEVKLKD--G-R--TLEA-DIVVVGVGGR 289 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~---~~-g~~~~v~~~~--G-~--~i~a-D~vi~a~G~~ 289 (461)
..++...+++.++++++++.|++|..+ ++ +++.+|++.+ | + ++.| .-||+|.|.-
T Consensus 211 ~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai 275 (566)
T 3fim_B 211 TAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSV 275 (566)
T ss_dssp HHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHH
T ss_pred HHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCc
Confidence 344555556789999999999999874 12 4667777643 4 3 4667 7799999954
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0062 Score=55.21 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5999999999999999999999999999988764
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.024 Score=59.07 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHHhc--CcEEEcCCcEEEEEecCC--CCEEEEEe---CCCc--EEecCEEEEccCC
Q 012545 238 YEGYYANK--GIKIIKGTVAVGFTTNAD--GEVKEVKL---KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 238 ~~~~l~~~--GV~v~~~~~v~~i~~~~~--g~~~~v~~---~~G~--~i~aD~vi~a~G~ 288 (461)
+.+.+++. ||+++.++.++++..+++ +++.+|.. .+|+ .+.|+.||+|||.
T Consensus 172 L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG 231 (662)
T 3gyx_A 172 VAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGG 231 (662)
T ss_dssp HHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred HHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCc
Confidence 34444555 899999888888877444 37777754 4554 5899999999994
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.012 Score=60.61 Aligned_cols=61 Identities=8% Similarity=-0.003 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCC-CCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
...+.+.+.+.++..|.+++++++|.+|..+++ |++.+|.+.+|+++.||.||.....-|.
T Consensus 377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~ 438 (650)
T 1vg0_A 377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 438 (650)
T ss_dssp TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence 567888999999999999999999999987443 7888888888999999999997765553
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.02 Score=54.24 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=58.4
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEE
Q 012545 189 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 267 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e-~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~ 267 (461)
..+++.|+|-|-+|+. +|..|.++|.+|+..+..+.. + ..+.|++.|++++.+.....
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~------~-----~~~~L~~~gi~v~~g~~~~~---------- 61 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP------P-----MSTQLEALGIDVYEGFDAAQ---------- 61 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT------T-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc------H-----HHHHHHhCCCEEECCCCHHH----------
Confidence 3678999999999997 899999999999999876431 1 23557778998875532110
Q ss_pred EEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 268 EVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 268 ~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
+.. -.+|.||+++|..|..+.+
T Consensus 62 ---l~~---~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 62 ---LDE---FKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp ---GGS---CCCSEEEECTTCCTTCHHH
T ss_pred ---cCC---CCCCEEEECCCcCCCCHHH
Confidence 000 1479999999998877655
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.016 Score=57.60 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=60.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.++++.|+|.|.+|+.+|..|.++|.+|+..+..+... ++ ..+.|++.|++++.+....++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~~-----~~~~L~~~gi~~~~g~~~~~~---------- 68 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----NP-----TAQSLLEEGIKVVCGSHPLEL---------- 68 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----CH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----Ch-----HHHHHHhCCCEEEECCChHHh----------
Confidence 57899999999999999999999999999998765311 11 235677889998866431100
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
+ ++ .+|.||+++|..++.+.+
T Consensus 69 --~-~~---~~d~vv~spgi~~~~p~~ 89 (451)
T 3lk7_A 69 --L-DE---DFCYMIKNPGIPYNNPMV 89 (451)
T ss_dssp --G-GS---CEEEEEECTTSCTTSHHH
T ss_pred --h-cC---CCCEEEECCcCCCCChhH
Confidence 0 00 179999999998877654
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.014 Score=55.17 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEccCCccCCccc------CH-HHHHHHHHHHHhcCcEEE
Q 012545 180 KLVEAIKAKKNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMPRLF------TA-DIAAFYEGYYANKGIKII 250 (461)
Q Consensus 180 ~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~--~g~~Vtli~~~~~~~~~~~------~~-~~~~~~~~~l~~~GV~v~ 250 (461)
++.+.+.......|+|||+|+.|+-+|..|++ .|.+|+++++.+.+..... +. .+.+.+.+.+++.|+++.
T Consensus 55 ~~~~~~~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~ 134 (326)
T 3fpz_A 55 RYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYE 134 (326)
T ss_dssp HHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCE
T ss_pred HHHhhhhhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEE
Confidence 44444555556789999999999999999964 5999999998765432210 10 111234456677888887
Q ss_pred cCCcE
Q 012545 251 KGTVA 255 (461)
Q Consensus 251 ~~~~v 255 (461)
.+...
T Consensus 135 ~~~~~ 139 (326)
T 3fpz_A 135 DEGDY 139 (326)
T ss_dssp ECSSE
T ss_pred ECCcc
Confidence 66543
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.014 Score=58.79 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 226 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 226 (461)
|+|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~G 37 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPG 37 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC----
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCC
Confidence 589999999999999999999999999999987754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.031 Score=46.36 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
..+++|+|+|..|...|..|.+.|++ |+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~---V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQN---VTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCC---EEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCC---EEEEECC
Confidence 57899999999999999999999887 9999987
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.022 Score=46.52 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=31.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+++++|+|+|..|...|..|.+.|++ |+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~---V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKK---VLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence 46899999999999999999999987 99999874
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.032 Score=45.14 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=29.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.++++|||+|..|...|..|.+.|++ |+++|+++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~---v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHD---IVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 46899999999999999999998876 99999863
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.035 Score=45.31 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.+++|||.|..|...|..|.+.|++ |+++|+++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~---v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIP---LVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence 46899999999999999999999987 99999984
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.032 Score=43.60 Aligned_cols=34 Identities=9% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~ 41 (461)
.++++|+|+|..|...+..|.+.| ++ |+++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~---v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYS---VTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEE---EEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCce---EEEEeCCH
Confidence 468999999999999999999988 54 99999874
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.038 Score=45.95 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|+|||+|..|...|..|.+.|.+ |+++++++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~---V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHS---VVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 47899999999999999999998875 99999874
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.02 Score=50.83 Aligned_cols=107 Identities=16% Similarity=0.264 Sum_probs=67.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++|+|||+|.+|...+..|.+.|.+|+++.+. +.+++ .+..++.+++++... +.. +
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~l----~~l~~~~~i~~i~~~----~~~--~----- 87 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAEI----NEWEAKGQLRVKRKK----VGE--E----- 87 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHHH----HHHHHTTSCEEECSC----CCG--G-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHHH----HHHHHcCCcEEEECC----CCH--h-----
Confidence 5799999999999999999999999999999753 34443 333345557665321 110 1
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhhhcccccCCCcEEeCCC-----CCCCCCCEEEeCccc
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF-----FKTSADDVYAVGDVA 326 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~-----~~t~~~~vya~GD~~ 326 (461)
.--.+|+||.|||-......+.... . .+|.||.- +.--.|.++--|+..
T Consensus 88 ------dL~~adLVIaAT~d~~~N~~I~~~a--k-~gi~VNvvD~p~~~~f~~Paiv~rg~l~ 141 (223)
T 3dfz_A 88 ------DLLNVFFIVVATNDQAVNKFVKQHI--K-NDQLVNMASSFSDGNIQIPAQFSRGRLS 141 (223)
T ss_dssp ------GSSSCSEEEECCCCTHHHHHHHHHS--C-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred ------HhCCCCEEEECCCCHHHHHHHHHHH--h-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence 1124899999999765443332211 2 45666521 222467777777655
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.045 Score=51.78 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=53.9
Q ss_pred CCCeEEEEcCChHHHH-HHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 4 KSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~-aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
..++|.|||.|.+|++ +|..|.++|++ |++.|..+.. ...+.+
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~---V~~~D~~~~~---------------------------------~~~~~L 46 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFE---VSGCDAKMYP---------------------------------PMSTQL 46 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCE---EEEEESSCCT---------------------------------THHHHH
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCE---EEEEcCCCCc---------------------------------HHHHHH
Confidence 3568999999999997 68888999987 9999987431 113446
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccc
Q 012545 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
++.|+++..+.. .+. +.. ..+|.+|+.+|-.+.-
T Consensus 47 ~~~gi~v~~g~~-----~~~----l~~---~~~d~vV~Spgi~~~~ 80 (326)
T 3eag_A 47 EALGIDVYEGFD-----AAQ----LDE---FKADVYVIGNVAKRGM 80 (326)
T ss_dssp HHTTCEEEESCC-----GGG----GGS---CCCSEEEECTTCCTTC
T ss_pred HhCCCEEECCCC-----HHH----cCC---CCCCEEEECCCcCCCC
Confidence 677888876531 110 000 1479999999987743
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.033 Score=53.71 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=74.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----cc------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LF------------------------------------ 230 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~------------------------------------ 230 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence 4899999999999999999999999999986543110 00
Q ss_pred ---------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe-CCC--cEEecCEEEEccCCCCCh
Q 012545 231 ---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDG--RTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 231 ---------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~G--~~i~aD~vi~a~G~~p~~ 292 (461)
-..+.+.+.+.+++.|++++.+++++++.. +++.+..+.. .++ .++.+|.||-|.|.....
T Consensus 86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~v 164 (397)
T 3oz2_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEF 164 (397)
T ss_dssp EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHH
T ss_pred ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCccccHH
Confidence 013455677777889999999999999887 3555444443 233 368999999999976543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.058 Score=55.22 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC----------------------------------------
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV---------------------------------------- 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~---------------------------------------- 42 (461)
..+.+++|+|.|..|...|..|.+.+.+ |+++|+++.
T Consensus 125 ~~~~hviI~G~g~~g~~la~~L~~~~~~---vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~t~~ 201 (565)
T 4gx0_A 125 DTRGHILIFGIDPITRTLIRKLESRNHL---FVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIANLS 201 (565)
T ss_dssp TCCSCEEEESCCHHHHHHHHHTTTTTCC---EEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEECSC
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEEeCC
Q ss_pred ----------------------------------------------------CCCCCCcccccccCCCCCCCCCCceeec
Q 012545 43 ----------------------------------------------------APYERPALSKAYLFPEGTARLPGFHVCV 70 (461)
Q Consensus 43 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (461)
.....|.....+........+..+...
T Consensus 202 D~~n~~~~~~ar~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~- 280 (565)
T 4gx0_A 202 DPDNANLCLTVRSLCQTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH- 280 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC-----------------------
T ss_pred cHHHHHHHHHHHHhcCceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcccccccchhcccCCceEEEEEEC-
Q ss_pred CCCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcc
Q 012545 71 GSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPL 150 (461)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~ 150 (461)
+..........+ ...-..+..+..+..+++.+.-.....+...-.++-.|...
T Consensus 281 ~s~l~G~~l~el---~~~~~~~~~vi~i~r~g~~~~p~~~~~l~~GD~L~v~g~~~------------------------ 333 (565)
T 4gx0_A 281 GTPFAGKTIGES---GIRQRTGLSIIGVWERGSLTTPQRETVLTEQSLLVLAGTKS------------------------ 333 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCCCHHHc---CcchhcCCEEEEEEECCEEeCCCCCcEeCCCCEEEEEeCHH------------------------
Q ss_pred cccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc
Q 012545 151 FQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 228 (461)
Q Consensus 151 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~ 228 (461)
++..+.++...-... ++++|+|.|..|..+|..|.+.|.+|++++..+.....
T Consensus 334 -----------------------~l~~~~~~~~~~~~~--~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~ 386 (565)
T 4gx0_A 334 -----------------------QLAALEYLIGEAPED--ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN 386 (565)
T ss_dssp ------------------------------------CC--CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCC
T ss_pred -----------------------HHHHHHHHhcCCCCC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhh
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.04 Score=55.34 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 227 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~ 227 (461)
.+.+|+|||+|.+|+.+|..|.+.|.+|+++++.+++..
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg 70 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence 357899999999999999999999999999999877644
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.035 Score=55.78 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=52.2
Q ss_pred CCCeEEEEcCChHHHH-HHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 4 KSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~-aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
+.++|.|||.|-+|++ +|..|.++|++ |++.|.... ...+.+
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~---V~~~D~~~~----------------------------------~~~~~l 63 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQ---ISGSDLAPN----------------------------------SVTQHL 63 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCE---EEEECSSCC----------------------------------HHHHHH
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCe---EEEEECCCC----------------------------------HHHHHH
Confidence 4579999999999997 69999999987 999987631 113446
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCc
Q 012545 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
++.|+++..+.. .+ . + ..+|.+|+.+|-.+
T Consensus 64 ~~~gi~~~~g~~-----~~--~--~-----~~~d~vV~Spgi~~ 93 (494)
T 4hv4_A 64 TALGAQIYFHHR-----PE--N--V-----LDASVVVVSTAISA 93 (494)
T ss_dssp HHTTCEEESSCC-----GG--G--G-----TTCSEEEECTTSCT
T ss_pred HHCCCEEECCCC-----HH--H--c-----CCCCEEEECCCCCC
Confidence 678998887631 11 0 1 14799999999776
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.1 Score=52.18 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=32.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
+||+|||||++||+||..|++.|++ |+|+|+++..
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~ 74 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFK---TLLLEARDRI 74 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCC---EEEECSSSBS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCC---EEEEeCCCCC
Confidence 8999999999999999999999987 9999999753
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.05 Score=51.06 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
|||+..+|.|||+|..|.+.|..|+..|+ .+|+++|.+
T Consensus 4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~ 41 (315)
T 3tl2_A 4 MTIKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP 41 (315)
T ss_dssp CCCCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence 66677899999999999999999999887 359999987
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.069 Score=43.27 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+++|+|+|..|...|..|.+.|++ |+++++++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~---v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---CEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 45799999999999999999999876 99999874
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.066 Score=49.49 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=32.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|| +.++|.|||+|.-|...|..|++.|++ |+++|+++
T Consensus 1 Mm-~~~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~~ 37 (283)
T 4e12_A 1 MT-GITNVTVLGTGVLGSQIAFQTAFHGFA---VTAYDINT 37 (283)
T ss_dssp CC-SCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCH
Confidence 55 467999999999999999999999986 99999874
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.071 Score=52.20 Aligned_cols=34 Identities=32% Similarity=0.367 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 6899999999999999999999999999998764
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.21 Score=51.50 Aligned_cols=37 Identities=14% Similarity=0.382 Sum_probs=34.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
+.|||+|||+|..|...|..|++.|.+ |++||++++.
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~---vl~id~~~~~ 43 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRSGQR---VLHVDSRSYY 43 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred CcCCEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCCcc
Confidence 369999999999999999999999987 9999999864
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.074 Score=52.75 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=55.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|.|||.|.+|+++|..|+++|++ |++.|..+.. .....+.++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~---V~~~D~~~~~-------------------------------~~~~~~~L~ 53 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAI---VTVNDGKPFD-------------------------------ENPTAQSLL 53 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCE---EEEEESSCGG-------------------------------GCHHHHHHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCE---EEEEeCCccc-------------------------------CChHHHHHH
Confidence 357999999999999999999999987 9999987420 001234567
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEe-cCEEEEccCCCcc
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFK-YQILVIATGSTVS 127 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~-~d~liiAtG~~~~ 127 (461)
+.|+++..+... +. . .-. +|.+|+++|..+.
T Consensus 54 ~~gi~~~~g~~~-----~~----~----~~~~~d~vv~spgi~~~ 85 (451)
T 3lk7_A 54 EEGIKVVCGSHP-----LE----L----LDEDFCYMIKNPGIPYN 85 (451)
T ss_dssp HTTCEEEESCCC-----GG----G----GGSCEEEEEECTTSCTT
T ss_pred hCCCEEEECCCh-----HH----h----hcCCCCEEEECCcCCCC
Confidence 789998876421 10 0 012 7999999998773
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.1 Score=51.07 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=45.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCccCCcc----------------cCHHHHHHHHHHHHhcCcEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----------------FTADIAAFYEGYYANKGIKII 250 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~~----------------~~~~~~~~~~~~l~~~GV~v~ 250 (461)
...+|+|||+|..|+-+|..|++.| .+|+++++.+++.... +.. ....+.+.+++.|+++.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~-~~~~~~~l~~~~g~~~~ 82 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-SYDTIQEIMDRTGDKVD 82 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT-TCHHHHHHHHHHCCCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecC-CcHHHHHHHHHhCCccc
Confidence 3568999999999999999999999 8999999987653210 111 12345677778887654
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.078 Score=51.87 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT 35 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 6899999999999999999999999999998764
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.12 Score=51.27 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=34.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
..+||||||||++|++||..|++.|++ |+|+|+++...
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G~~---V~vlE~~~~~G 47 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDGKK---VLHIDKQDHYG 47 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCCCC
Confidence 468999999999999999999999987 99999997643
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.086 Score=50.19 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
..|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG 38 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4799999999999999999999999999999853
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=93.12 E-value=0.087 Score=51.91 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=34.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
|++.+||+|||+|++|+++|..|++.|++ |+|+|+++..
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~---v~~~e~~~~~ 41 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKK---VLHMDRNPYY 41 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCc
Confidence 44578999999999999999999999987 9999998754
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.074 Score=46.96 Aligned_cols=32 Identities=34% Similarity=0.553 Sum_probs=29.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|+|||+|..|...|..|.+.|++ |+++|+++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~---v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYG---VVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 699999999999999999999887 99999874
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.069 Score=52.58 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3689999999999999999999999999999876
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.24 Score=46.48 Aligned_cols=82 Identities=21% Similarity=0.124 Sum_probs=52.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEc--CCcEEEEEecCCCCEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK--GTVAVGFTTNADGEVKE 268 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~--~~~v~~i~~~~~g~~~~ 268 (461)
.+|+|+|+|.+|.-+|..|.+.|.+|+++.|.+ . +.+++.|+.+.. .... .+.. ..
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~----------~-----~~i~~~Gl~~~~~~~g~~-~~~~------~~ 60 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD----------Y-----ETVKAKGIRIRSATLGDY-TFRP------AA 60 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT----------H-----HHHHHHCEEEEETTTCCE-EECC------SC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh----------H-----HHHHhCCcEEeecCCCcE-EEee------ee
Confidence 479999999999999999999999999988732 0 345566776542 1111 1100 01
Q ss_pred EEeCCCcE-E-ecCEEEEccCCCCChhhh
Q 012545 269 VKLKDGRT-L-EADIVVVGVGGRPLISLF 295 (461)
Q Consensus 269 v~~~~G~~-i-~aD~vi~a~G~~p~~~~~ 295 (461)
+. .+-.. . .+|.||+|+-.....+.+
T Consensus 61 ~~-~~~~~~~~~~DlVilavK~~~~~~~l 88 (320)
T 3i83_A 61 VV-RSAAELETKPDCTLLCIKVVEGADRV 88 (320)
T ss_dssp EE-SCGGGCSSCCSEEEECCCCCTTCCHH
T ss_pred eE-CCHHHcCCCCCEEEEecCCCChHHHH
Confidence 11 22212 2 689999998876655544
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.12 Score=49.92 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC-Ccc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWC 225 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~ 225 (461)
...+|+|||+|..|+-+|..|.+.|.+|+++++. +++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v 80 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV 80 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 3568999999999999999999999999999998 553
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.097 Score=51.31 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 5899999999999999999999999999987654
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.092 Score=50.15 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
||+ .++|.|||+|..|...|..|++.|++ |+++++++
T Consensus 1 mm~-~mki~iiG~G~~G~~~a~~L~~~g~~---V~~~~r~~ 37 (359)
T 1bg6_A 1 MIE-SKTYAVLGLGNGGHAFAAYLALKGQS---VLAWDIDA 37 (359)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCC-cCeEEEECCCHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence 554 57999999999999999999998875 99998863
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.11 Score=46.06 Aligned_cols=34 Identities=21% Similarity=0.485 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
+.++|+|||||..|...+..|.+.|.+ |+|++++
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~---VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAA---ITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCC---EEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEECCC
Confidence 468999999999999999999999876 9999986
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.12 Score=49.90 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
+.|+|||+|..|+++|..+++.|.+|+++++.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 469999999999999999999999999999765
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.13 Score=43.82 Aligned_cols=34 Identities=24% Similarity=0.125 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~ 41 (461)
..+++|||.|..|...|..|.+. |++ |+++|+++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~---V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKI---SLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSC---EEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCe---EEEEECCH
Confidence 35899999999999999999998 987 99999874
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.14 Score=42.47 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
..++++|+|+|.+|..++..|.+.|.+|+++++.+.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 567999999999999999999999999999987654
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.1 Score=50.51 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
..|+|||+|.+|+-+|..|++.|.+|+++++.+..
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~ 39 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFF 39 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 36999999999999999999999999999987643
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.13 Score=48.28 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++++|+|||+|..|.+.|..|+..++ ..+|.++|.++
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~ 42 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK 42 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 46799999999999999999999876 34699999874
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.14 Score=51.25 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 227 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~ 227 (461)
..+|+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 48 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG 48 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 56899999999999999999999999999998876533
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.11 Score=49.91 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
..|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~ 37 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3699999999999999999999999999998754
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.12 Score=48.47 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|.+.++|.|||+|..|.+.|..|++.|+. +|+++|.++
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~~ 38 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIAE 38 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCc
Confidence 44567999999999999999999998872 299999874
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.13 Score=49.19 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|.++.++|.|||+|.-|.+.|..|++.|++ |+++++++
T Consensus 25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~---V~l~~r~~ 62 (356)
T 3k96_A 25 MEPFKHPIAILGAGSWGTALALVLARKGQK---VRLWSYES 62 (356)
T ss_dssp --CCCSCEEEECCSHHHHHHHHHHHTTTCC---EEEECSCH
T ss_pred ccccCCeEEEECccHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence 333457999999999999999999999986 99999874
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=92.45 E-value=0.13 Score=51.96 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----------------cCHHHHHHHHHHHHhcCcEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------FTADIAAFYEGYYANKGIKII 250 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~GV~v~ 250 (461)
..+|+|||+|..|+-+|..|++.|.+|+++++.+++.... +... ...+.+.+++.|++..
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~ 80 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETY 80 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCcce
Confidence 4579999999999999999999999999999987763221 0111 3455677888888764
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.12 Score=49.65 Aligned_cols=34 Identities=24% Similarity=0.493 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
...|+|||+|.+|+.+|..|++.|.+|+++++..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3579999999999999999999999999999874
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.13 Score=48.50 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=33.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|++...+|.|||+|..|.+.|..|+..++ ..+|+++|.++
T Consensus 1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~~ 40 (326)
T 3pqe_A 1 MNKHVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVNK 40 (326)
T ss_dssp -CCSCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSCH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecch
Confidence 66667899999999999999999999886 23599999863
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.09 Score=52.82 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHHH-CCCcEEEEccCCccCC
Q 012545 192 KAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMP 227 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~-~g~~Vtli~~~~~~~~ 227 (461)
.|+|||+|.+|+-+|..|++ .|.+|+++++.+++..
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG 48 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence 69999999999999999987 5999999999877543
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.12 Score=52.10 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~ 225 (461)
..+|+|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri 44 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 357999999999999999999999 999999988754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.47 Score=38.37 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 269 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v 269 (461)
.++++|+|.|..|..+|..|.+.|.+|+++++. ++..+ .+++.|+.++.+.. ... .+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~---------~~~~~----~~~~~g~~~i~gd~--------~~~--~~ 63 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS---------RTRVD----ELRERGVRAVLGNA--------ANE--EI 63 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC---------HHHHH----HHHHTTCEEEESCT--------TSH--HH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC---------HHHHH----HHHHcCCCEEECCC--------CCH--HH
Confidence 468999999999999999999999999999863 33322 33456776653311 000 00
Q ss_pred EeCCCcEEecCEEEEccCCCC
Q 012545 270 KLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 270 ~~~~G~~i~aD~vi~a~G~~p 290 (461)
...-+ .-.+|.||++++...
T Consensus 64 l~~a~-i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 64 MQLAH-LECAKWLILTIPNGY 83 (140)
T ss_dssp HHHTT-GGGCSEEEECCSCHH
T ss_pred HHhcC-cccCCEEEEECCChH
Confidence 00001 126899999998654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.15 Score=47.54 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.++|.|||+|.-|...|..|++.|++ |+++|+++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~---V~~~d~~~ 48 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQTE 48 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 46899999999999999999999986 99999874
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.13 Score=49.37 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
.++|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~ 43 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP 43 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence 578999999999999999999 69999999998654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.1 Score=48.47 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|.|||.|.-|...|..|++.|++ |+++++++
T Consensus 14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~---V~~~dr~~ 48 (296)
T 3qha_A 14 EQLKLGYIGLGNMGAPMATRMTEWPGG---VTVYDIRI 48 (296)
T ss_dssp -CCCEEEECCSTTHHHHHHHHTTSTTC---EEEECSST
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence 357899999999999999999999986 99999875
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.16 Score=48.13 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-CCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~-~~~~V~vie~~~ 41 (461)
.++|+|||+|..|.+.|..|+..|+ + |+++|.++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~---V~L~D~~~ 43 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELAD---VVLYDVVK 43 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCE---EEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe---EEEEECCh
Confidence 4699999999999999999999887 4 99999874
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.13 Score=49.03 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
...|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 3579999999999999999999999999999753
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.15 Score=50.82 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
..+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~ 51 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 51 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 568999999999999999999999999999998764
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=92.00 E-value=0.17 Score=50.81 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEE
Q 012545 189 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 267 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e-~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~ 267 (461)
..+++.|+|-|-+|+- +|..|.++|.+|+..+... .+ ..+.|++.|++++.+... +.
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~-------~~-----~~~~l~~~gi~~~~g~~~-------~~--- 78 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP-------NS-----VTQHLTALGAQIYFHHRP-------EN--- 78 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCEEESSCCG-------GG---
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC-------CH-----HHHHHHHCCCEEECCCCH-------HH---
Confidence 3589999999999996 7999999999999987642 11 234678889998865321 10
Q ss_pred EEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 268 EVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 268 ~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
+ -.+|.||+++|..+..+.+
T Consensus 79 ---~-----~~~d~vV~Spgi~~~~p~~ 98 (494)
T 4hv4_A 79 ---V-----LDASVVVVSTAISADNPEI 98 (494)
T ss_dssp ---G-----TTCSEEEECTTSCTTCHHH
T ss_pred ---c-----CCCCEEEECCCCCCCCHHH
Confidence 0 1379999999988866544
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.056 Score=53.43 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=55.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++|+|+|.|.+|+..|..|.++|.+|+..+....... . ..|+ .|+++..++.. . + .
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~---~--------~~l~-~G~~~~~g~~~----~--~----~ 61 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG---L--------DKLP-EAVERHTGSLN----D--E----W 61 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT---G--------GGSC-TTSCEEESSCC----H--H----H
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch---h--------HHhh-CCCEEEECCCc----H--H----H
Confidence 468999999999999999999999999999987654211 1 3345 68887655421 0 0 0
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
+ . .+|.||+++|..|..+.+
T Consensus 62 ~------~-~~d~vV~s~gi~~~~p~~ 81 (439)
T 2x5o_A 62 L------M-AADLIVASPGIALAHPSL 81 (439)
T ss_dssp H------H-TCSEEEECTTSCTTCHHH
T ss_pred h------c-cCCEEEeCCCCCCCCHHH
Confidence 0 1 478999999987765543
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.099 Score=46.26 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEE-EeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAI-ISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~v-ie~~~ 41 (461)
++++|.|||+|.-|.+.|..|.+.|++ |++ +++++
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~~g~~---V~~v~~r~~ 57 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTAAQIP---AIIANSRGP 57 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHHTTCC---EEEECTTCG
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECCCH
Confidence 356899999999999999999998876 888 77663
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.13 Score=50.74 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+.++|+|||.|.+|+++|..|.++|++ |++.|....
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~~---v~~~D~~~~ 39 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRMT 39 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCC---CEEEESSSS
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCCE---EEEEECCCC
Confidence 356899999999999999999999987 999998753
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.18 Score=47.51 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..++|.|||+|..|...|..|+..|+- +|+++|.++
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~--~v~L~Di~~ 38 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK 38 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCH
Confidence 456999999999999999999998872 299999874
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.2 Score=46.87 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|+..++|.|||+|.-|...|..|.+.|++ |+++++++
T Consensus 27 ~~~~~~I~iIG~G~mG~~~a~~l~~~g~~---V~~~~~~~ 63 (316)
T 2uyy_A 27 TPTDKKIGFLGLGLMGSGIVSNLLKMGHT---VTVWNRTA 63 (316)
T ss_dssp CCCSSCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSG
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence 33457899999999999999999998876 99998874
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.75 E-value=0.24 Score=40.79 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 578999999999999999999999999999864
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.19 Score=50.20 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=32.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|+|+.++|.|||+|.-|...|..|++.|++ |+++|+++
T Consensus 1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~---V~l~D~~~ 38 (483)
T 3mog_A 1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQ---VLLYDISA 38 (483)
T ss_dssp ---CCCCEEEECCSHHHHHHHHHHHHTTCC---EEEECSCH
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence 554567999999999999999999999987 99999875
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.26 Score=48.96 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=32.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
+||+|||||++||+||++|++.|. ..+|+|+|+++..
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~-~~~V~vlEa~~~~ 39 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPC-PPKVVLVESSERL 39 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSS-CCEEEEECSSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCC-CCcEEEEeCCCCC
Confidence 699999999999999999999987 1239999998753
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=91.60 E-value=0.16 Score=48.64 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.-+|||+|+|.||+.+|..|...|.+ +|+++|+..
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G 222 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG 222 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence 46899999999999999999999974 399999984
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=91.60 E-value=0.093 Score=48.01 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|+|||||..|...+..|.+.|.+ |+|++++.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~---VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCC
Confidence 458999999999999999999999977 99999874
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.1 Score=51.59 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC------CcEEEEccCCccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN------IDVSMVYPEPWCM 226 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g------~~Vtli~~~~~~~ 226 (461)
..+|+|||+|.+|+-+|..|++.| .+|+++++.+++.
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~G 47 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVG 47 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCC
Confidence 357999999999999999999999 9999999987653
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=91.45 E-value=0.2 Score=50.26 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 226 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 226 (461)
..+|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G 49 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG 49 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 4689999999999999999999999999999988754
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.2 Score=49.39 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
.+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 40 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV 40 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 47999999999999999999999999999988765
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.17 Score=48.90 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|+|||+|.+|+.+|..+...|.+ |+++|+.+
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAV---VSATDVRP 223 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence 46899999999999999999999975 99999885
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.17 Score=48.91 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 226 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 226 (461)
.+++|||+|.+|+.+|..|.+.|.+|+++++.+++.
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G 39 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 39 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence 479999999999999999999999999999887653
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.2 Score=47.85 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|||+|+|.+|..+|..|...|.+ +|+++|+..
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~G 226 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKG 226 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCC
Confidence 56899999999999999999999974 399999984
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.31 Score=45.61 Aligned_cols=83 Identities=20% Similarity=0.231 Sum_probs=52.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 270 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~ 270 (461)
.+|.|+|+|.+|.-+|..|.+.|.+|+++.|.+ . +.+++.|+++.....-..+.. ..+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--------------~-~~i~~~g~~~~~~~g~~~~~~------~~~~ 61 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--------------Y-EAIAGNGLKVFSINGDFTLPH------VKGY 61 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--------------H-HHHHHTCEEEEETTCCEEESC------CCEE
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--------------H-HHHHhCCCEEEcCCCeEEEee------ceee
Confidence 479999999999999999999999999987732 0 345667877653211001100 0111
Q ss_pred eCCCc-EEecCEEEEccCCCCChhhh
Q 012545 271 LKDGR-TLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 271 ~~~G~-~i~aD~vi~a~G~~p~~~~~ 295 (461)
.+-+ .-.+|.||+|+-.....+.+
T Consensus 62 -~~~~~~~~~D~vilavk~~~~~~~l 86 (312)
T 3hn2_A 62 -RAPEEIGPMDLVLVGLKTFANSRYE 86 (312)
T ss_dssp -SCHHHHCCCSEEEECCCGGGGGGHH
T ss_pred -cCHHHcCCCCEEEEecCCCCcHHHH
Confidence 1111 12689999998766544444
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.22 Score=48.87 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~ 225 (461)
...|+|||+|..|+-+|..|++.|. +|+++++.+..
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~ 42 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP 42 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 3579999999999999999999999 99999987653
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.21 Score=48.50 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
..+++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 347999999999999999999999999999988764
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.2 Score=47.92 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|++.++|.|||.|.-|...|..|++.|++ |+++++++
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~---V~v~dr~~ 55 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHE---CVVYDLNV 55 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence 44568999999999999999999999986 99999874
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.16 Score=49.18 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHH-CC-CcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKI-NN-IDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~-~g-~~Vtli~~~~ 223 (461)
..|+|||+|..|+.+|..|++ .| .+|+++++.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 89 9999999876
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.22 Score=48.36 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~ 225 (461)
..+++|||+|..|+-+|..|++. |.+|+++++.+++
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 45799999999999999999998 9999999988764
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.23 Score=40.12 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
.++++|+|+|.+|..++..|.+.|.+|+++++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 46899999999999999999999999999986
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.2 Score=46.91 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
.++|+|||+|..|..+|..++..|.+|++++..+..
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~ 41 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQ 41 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 578999999999999999999999999999876543
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=90.77 E-value=0.23 Score=50.55 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---CCCcEEEEccCCc
Q 012545 190 NGKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPW 224 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~---~g~~Vtli~~~~~ 224 (461)
..+|+|||+|..|+-+|..|++ .|.+|+++++.+.
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~ 62 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI 62 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence 5689999999999999999999 9999999998653
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.72 Score=43.19 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=50.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
...+|.|+|+|.+|.-+|..|.+.|.+|+++ +.+ +-. +.+++.|+++.... . .+.. . ..
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~---------~~~----~~i~~~g~~~~~~~-~-~~~~---~--~~ 76 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP---------QHV----QAIEATGLRLETQS-F-DEQV---K--VS 76 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH---------HHH----HHHHHHCEEEECSS-C-EEEE---C--CE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH---------hHH----HHHHhCCeEEEcCC-C-cEEE---e--ee
Confidence 4678999999999999999999999999987 421 111 33445677665221 1 1111 0 01
Q ss_pred EEeCCCcE-EecCEEEEccCCCCChhhh
Q 012545 269 VKLKDGRT-LEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 269 v~~~~G~~-i~aD~vi~a~G~~p~~~~~ 295 (461)
+. .+-.. -.+|+||+|+......+.+
T Consensus 77 ~~-~~~~~~~~~D~vilavk~~~~~~~l 103 (318)
T 3hwr_A 77 AS-SDPSAVQGADLVLFCVKSTDTQSAA 103 (318)
T ss_dssp EE-SCGGGGTTCSEEEECCCGGGHHHHH
T ss_pred ee-CCHHHcCCCCEEEEEcccccHHHHH
Confidence 11 22111 2589999998765433333
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.26 Score=46.59 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=29.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
.++|.|||+|.-|...|..|++.|++ |++++++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~---V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEA---INVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCC---EEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCE---EEEEECh
Confidence 46899999999999999999999876 9999975
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=90.59 E-value=0.22 Score=47.68 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|+|||+|..|+.+|..|...|.+ |+++|+.+
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~ 217 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAK---TTGYDVRP 217 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSG
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 46899999999999999999999975 99999884
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.24 Score=51.97 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
...|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~ 299 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP 299 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 358999999999999999999999999999986543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.24 Score=46.51 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++|.|||+|.-|.+.|..|++.|++ |+++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHC---VSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCE---EEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCCh
Confidence 5899999999999999999998875 99999873
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.3 Score=46.64 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=31.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
++|+|||||.-|..++..++++|++ |+++|.++..
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~---vv~vd~~~~~ 36 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMK---VVLVDKNPQA 36 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCCC
Confidence 5899999999999999999999998 9999988653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.39 E-value=0.24 Score=51.80 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
..|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~ 306 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEA 306 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 5899999999999999999999999999998644
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=90.37 E-value=0.32 Score=49.14 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=56.9
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEE
Q 012545 189 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 267 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e-~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~ 267 (461)
+.+++.+||-|-+|+- +|..|.++|.+|+..+.... ++ ..+.|++.|++++.+.....+
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~--------- 77 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL--------- 77 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc---------
Confidence 5789999999999997 58889999999999887542 11 235677889988755321100
Q ss_pred EEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 268 EVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 268 ~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
.-.+|.||+.+|..+..+.+
T Consensus 78 --------~~~~d~vV~Spgi~~~~p~l 97 (524)
T 3hn7_A 78 --------QPAPDLVVVGNAMKRGMDVI 97 (524)
T ss_dssp --------CSCCSEEEECTTCCTTSHHH
T ss_pred --------CCCCCEEEECCCcCCCCHHH
Confidence 01479999999988876654
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=90.21 E-value=0.24 Score=47.49 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
+++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 5899999999999999999999999999987654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=90.17 E-value=0.42 Score=45.17 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=49.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 269 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v 269 (461)
..+|.|||+|.+|.-+|..|.+.|.+|+++.|. +. .+.+++.|+.+.... . .... . ..+
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~---------~~-----~~~~~~~g~~~~~~~-~-~~~~--~---~~~ 61 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG---------AT-----LQALQTAGLRLTEDG-A-THTL--P---VRA 61 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH---------HH-----HHHHHHTCEEEEETT-E-EEEE--C---CEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh---------HH-----HHHHHHCCCEEecCC-C-eEEE--e---eeE
Confidence 358999999999999999999999999998752 11 134566788765321 1 1111 0 011
Q ss_pred EeCCCc-EEecCEEEEccCCC
Q 012545 270 KLKDGR-TLEADIVVVGVGGR 289 (461)
Q Consensus 270 ~~~~G~-~i~aD~vi~a~G~~ 289 (461)
. .+-. .-.+|.||+|+...
T Consensus 62 ~-~~~~~~~~~D~Vilavk~~ 81 (335)
T 3ghy_A 62 T-HDAAALGEQDVVIVAVKAP 81 (335)
T ss_dssp E-SCHHHHCCCSEEEECCCHH
T ss_pred E-CCHHHcCCCCEEEEeCCch
Confidence 1 1211 13589999998753
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=0.18 Score=47.82 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCC------CcEEEEccCC
Q 012545 192 KAVVVGGGYIGLELSAALKINN------IDVSMVYPEP 223 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g------~~Vtli~~~~ 223 (461)
.|+|||+|.+|+-+|..|++.| .+|+++++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 6899999999999999999998 8999999874
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=90.05 E-value=0.28 Score=45.91 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=28.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
++|.|||+|.-|.+.|..|++.|.+ |++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGED---VHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCC---EEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCe---EEEEEcC
Confidence 4799999999999999999999876 9999986
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.28 Score=45.68 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++|.|||+|.-|...|..|.+.|++ |+++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGND---VTLIDQWP 36 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCc---EEEEECCH
Confidence 4899999999999999999998875 99998863
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=89.88 E-value=0.28 Score=45.45 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++|.|||+|.-|.+.|..|.+.|.+ |+++++++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~---V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPH---TTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTT---CEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCe---EEEEEecc
Confidence 4799999999999999999999875 99999874
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.21 Score=46.67 Aligned_cols=36 Identities=25% Similarity=0.498 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHc-----C-CCCCcEEEEeC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQ-----G-VKPGELAIISK 39 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~-----g-~~~~~V~vie~ 39 (461)
|..++++|.|||+|.-|...|..|.+. | ++ |+++++
T Consensus 4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~---V~~~~r 45 (317)
T 2qyt_A 4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLE---VSWIAR 45 (317)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEE---EEEECC
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCC---EEEEEc
Confidence 333446899999999999999999998 7 65 999987
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=89.85 E-value=0.3 Score=44.05 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+|+|||+|-.|..+|..|++.|.. +|+|+|++..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~--~i~lvD~d~v 66 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV 66 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCC--eEEEEcCCCc
Confidence 36899999999999999999999974 3999999853
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.78 E-value=0.39 Score=38.45 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
..+++|+|+|.+|..++..|.+.|.+|+++++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 35799999999999999999999999999876
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=89.78 E-value=0.3 Score=45.93 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCC-CCcEEEEeCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVK-PGELAIISKEA 41 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~-~~~V~vie~~~ 41 (461)
|++.++|.|||+|.-|.+.|..|.+.|.. ..+|+++++++
T Consensus 19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence 34456899999999999999999998831 12399998773
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=89.76 E-value=0.24 Score=49.22 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPW 224 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~ 224 (461)
..+|+|||+|.+|+-+|..|.+.| .+|+++++.++
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~ 40 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER 40 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 357999999999999999999999 99999998654
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.3 Score=45.84 Aligned_cols=35 Identities=11% Similarity=-0.014 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPW 224 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~ 224 (461)
..+|.|||.|..|.-+|..|.+.| .+|+++++.+.
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~ 59 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN 59 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 357999999999999999999999 99999987653
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=89.66 E-value=0.26 Score=48.96 Aligned_cols=36 Identities=25% Similarity=0.117 Sum_probs=32.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc-CC-CCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQ-GV-KPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~-g~-~~~~V~vie~~~~ 42 (461)
..++|.|||+|.-|+..|..|++. |+ + |+++|.++.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~---V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEK---VLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCE---EEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECChh
Confidence 356899999999999999999999 88 6 999999864
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=89.64 E-value=0.35 Score=50.44 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
..++|+|||+|..|+.+|..|.+.|.+|+++++.+++
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~ 142 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 142 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3678999999999999999999999999999987654
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=89.60 E-value=0.38 Score=51.52 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
.++|+|||+|..|+.+|..|.+.|.+|+++++.+++
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~ 313 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 313 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence 468999999999999999999999999999987654
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=89.46 E-value=0.24 Score=49.19 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=28.1
Q ss_pred CCCCCCeEEEEcCChH-HHHHHHHHHHc--CCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVS-AGYAAREFAKQ--GVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~a-Gl~aA~~L~~~--g~~~~~V~vie~~~ 41 (461)
|||++++|+|||||.. |.+.|..|.+. +++..+|+|+|.++
T Consensus 24 m~m~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~ 67 (472)
T 1u8x_X 24 MKKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK 67 (472)
T ss_dssp --CCCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH
Confidence 5555679999999986 33345567776 55344699999874
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=89.45 E-value=0.33 Score=45.42 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.++|+|||+|..|...|..|++.|+ ..+|+++|+++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 3589999999999999999999886 12499999874
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=89.43 E-value=0.34 Score=37.45 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=29.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPE 222 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~ 222 (461)
.++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999999 889888763
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=0.33 Score=47.39 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|+|||.|..|...|..|.+.|++ |++||+++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~---vvvId~d~ 37 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVK---MVVLDHDP 37 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEECCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence 46799999999999999999999987 99999985
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=89.31 E-value=0.45 Score=44.46 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
..+|.|||.|..|.-+|..|.+.|. +|+++++.+ +++.. +.+.+.|+....+ . ..
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~-------~~~~~----~~~~~~g~~~~~~-----~----~e---- 79 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS-------AESWR----PRAEELGVSCKAS-----V----AE---- 79 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC-------HHHHH----HHHHHTTCEECSC-----H----HH----
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC-------CHHHH----HHHHHCCCEEeCC-----H----HH----
Confidence 4689999999999999999999999 999887743 11222 2344556543110 0 00
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeC
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD 309 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd 309 (461)
-.-.+|.||+|+......+.+..-... ..+.+.||
T Consensus 80 ------~~~~aDvVi~~vp~~~~~~~~~~l~~~l~~~~ivvd 115 (312)
T 3qsg_A 80 ------VAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYAD 115 (312)
T ss_dssp ------HHHHCSEEEECSCTTTHHHHHHHHGGGCCTTCEEEE
T ss_pred ------HHhcCCEEEEecCchhHHHHHHhhHhhcCCCCEEEE
Confidence 012589999999877655544322221 34445554
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=89.28 E-value=0.2 Score=50.35 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHH---CCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~---~g~~Vtli~~~~ 223 (461)
.+|+|||+|..|+-+|..|++ .|.+|+++++.+
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~ 38 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN 38 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 479999999999999999999 999999999865
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=89.28 E-value=0.46 Score=44.55 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
+.++|+|||+|..|.+.|..|+..++ ..+|.++|.+
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~ 40 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD 40 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence 45799999999999999999998775 3469999976
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=0.4 Score=38.51 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 578999999999999999999999999988763
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.32 Score=45.51 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=29.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCC-CCCcEEEEeCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE 40 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~-~~~~V~vie~~ 40 (461)
..++|.|||.|.-|...|..|++.|+ + |++++++
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~---V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAID---MAAYDAA 57 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCE---EEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCe---EEEEcCC
Confidence 35799999999999999999999997 5 9999986
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=89.16 E-value=0.37 Score=44.78 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.++|.|||.|.-|...|..|++.|++ |+++++++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~---V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLS---TWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence 56899999999999999999999986 99998874
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.04 E-value=0.31 Score=42.87 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~-G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++++|+|.|| |..|...+..|.+.|++ |+++.+.+
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~r~~ 38 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFE---VTAVVRHP 38 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCE---EEEECSCG
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCE---EEEEEcCc
Confidence 4578999995 99999999999998876 99999884
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=89.01 E-value=0.5 Score=43.22 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+++|+|.|+|..|...+..|.+.|++ |+++.+..
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~---V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHE---VTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCC---EEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 45899999999999999999999986 99998874
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=88.98 E-value=0.45 Score=41.55 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.++|.|||+|.-|.+.|..|++.|++ |+++++++.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~---V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHE---VTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCE---EEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCCHH
Confidence 46899999999999999999998876 999998753
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=0.5 Score=46.87 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCC-CCCcEEEEeCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAV 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~-~~~~V~vie~~~~ 42 (461)
.+.+||+|||||++|+++|..|++.|+ + |+|+|+.+.
T Consensus 2 ~~~~~~~iiG~G~~g~~~a~~l~~~g~~~---v~~~e~~~~ 39 (472)
T 1b37_A 2 TVGPRVIVVGAGMSGISAAKRLSEAGITD---LLILEATDH 39 (472)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHHTTCCC---EEEECSSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCc---eEEEeCCCC
Confidence 357899999999999999999999987 5 999999865
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=88.90 E-value=0.34 Score=44.86 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+++++|.|||+|.-|...|..|.+.|++ |+++++++
T Consensus 2 ~~~~~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~~~~ 37 (301)
T 3cky_A 2 EKSIKIGFIGLGAMGKPMAINLLKEGVT---VYAFDLME 37 (301)
T ss_dssp --CCEEEEECCCTTHHHHHHHHHHTTCE---EEEECSSH
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence 3567999999999999999999998875 99998763
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=88.88 E-value=0.45 Score=47.54 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCcc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC 225 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~ 225 (461)
..+++|||+|..|+-+|..|++.| .+|+++++.+++
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 468999999999999999999998 799999988764
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=88.88 E-value=0.35 Score=47.00 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|+|||+|.+|+.++..++..|.+ |+++|+.+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAI---VRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence 46899999999999999999998875 99999874
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=88.83 E-value=0.35 Score=48.10 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~ 41 (461)
+.++|.|||.|..|+..|..|++. |++ |+++|+++
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~---V~~~d~~~ 40 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHMCPEIR---VTVVDVNE 40 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSE---EEEECSCH
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCCCE---EEEEECCH
Confidence 346899999999999999999998 565 99999874
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=88.82 E-value=0.56 Score=45.11 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.++|.|||+|.-|...+..+++.|++ |.+++..+.
T Consensus 12 ~~~IlIlG~G~lg~~la~aa~~lG~~---viv~d~~~~ 46 (377)
T 3orq_A 12 GATIGIIGGGQLGKMMAQSAQKMGYK---VVVLDPSED 46 (377)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEECCCC
Confidence 57899999999999999999999997 999998764
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=2.7 Score=40.98 Aligned_cols=103 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC--------CccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--------PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 261 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~--------~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 261 (461)
+.+..|||.|+.|.-+|..|++.|.+|+.+++. ....+- ..+.+.+.+.+.+....+.+-.+..
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi-~epgl~~ll~~~~~~g~l~~ttd~~------- 82 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISI-EEPGLQEVYEEVLSSGKLKVSTTPE------- 82 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSS-CCTTHHHHHHHHHHTTCEEEESSCC-------
T ss_pred CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCc-CCCCHHHHHHhhcccCceEEeCchh-------
Q ss_pred CCCCEEEEEeCCCcEEecCEEEEccCCCCC-----------hhhhhccccc--CCCcEEeCCCCCCCCCC
Q 012545 262 ADGEVKEVKLKDGRTLEADIVVVGVGGRPL-----------ISLFKGQVAE--NKGGIETDDFFKTSADD 318 (461)
Q Consensus 262 ~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~-----------~~~~~~~~~~--~~g~i~vd~~~~t~~~~ 318 (461)
.||.+|+|++..+. ......++.. ..|.+.|+.. |..|+
T Consensus 83 ----------------~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S--TV~pg 134 (431)
T 3ojo_A 83 ----------------ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES--TIAPK 134 (431)
T ss_dssp ----------------CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS--CCCTT
T ss_pred ----------------hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec--CCChh
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=0.4 Score=44.90 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|.|||+|.-|..-|..++..|++ |+|+|.++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~---V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFR---VKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCC---EEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 46899999999999999999999998 99999875
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.74 E-value=0.51 Score=44.22 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
|+++++|+|||+|..|.+.|..|...++ ..++.|+|.+
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~-~~el~L~Di~ 39 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVV 39 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHcCCC-CCEEEEEeCC
Confidence 4456899999999999999999998875 3469999976
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.72 E-value=0.93 Score=42.16 Aligned_cols=72 Identities=26% Similarity=0.365 Sum_probs=0.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 271 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~ 271 (461)
+|+|+|+|.+|.-+|..|. .|.+|+++.| ...-.+.+++.|+.+...... ... .+..
T Consensus 4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r-------------~~~~~~~l~~~G~~~~~~~~~--~~~-------~~~~ 60 (307)
T 3ego_A 4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTR-------------RQEQAAAIQSEGIRLYKGGEE--FRA-------DCSA 60 (307)
T ss_dssp EEEEECCSHHHHHHHHHHH-TTSEEEEECS-------------CHHHHHHHHHHCEEEEETTEE--EEE-------CCEE
T ss_pred EEEEECCCHHHHHHHHHHh-cCCceEEEEC-------------CHHHHHHHHhCCceEecCCCe--ecc-------cccc
Q ss_pred CCCcEEecCEEEEcc
Q 012545 272 KDGRTLEADIVVVGV 286 (461)
Q Consensus 272 ~~G~~i~aD~vi~a~ 286 (461)
.....-.+|.||+|+
T Consensus 61 ~~~~~~~~D~vilav 75 (307)
T 3ego_A 61 DTSINSDFDLLVVTV 75 (307)
T ss_dssp ESSCCSCCSEEEECC
T ss_pred cccccCCCCEEEEEe
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=88.69 E-value=0.42 Score=43.84 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=29.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|.|||+|.-|...|..|.+.|++ |+++++++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~r~~ 33 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHE---VQGWLRVP 33 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE---EEEECSSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCC---EEEEEcCc
Confidence 699999999999999999999875 99999875
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=88.68 E-value=0.4 Score=47.40 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=30.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++|.|||.|..|+..|..|++.|++ |+++|+++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~---V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGAN---VRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCE---EEEEECCH
Confidence 5899999999999999999999986 99999874
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=0.45 Score=45.94 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|+|||+|.+|+.++..++..|.+ |+++|+.+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~~~d~~~ 205 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVRA 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 46899999999999999999998875 99999874
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.47 E-value=0.49 Score=44.47 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=32.2
Q ss_pred CCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~-G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
||++.+.|+|.|| |..|...+..|.+.|++ |+++++..
T Consensus 1 ~M~~~~~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~r~~ 39 (341)
T 3enk_A 1 SMSTKGTILVTGGAGYIGSHTAVELLAHGYD---VVIADNLV 39 (341)
T ss_dssp -CCSSCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECCCS
T ss_pred CCCCCcEEEEecCCcHHHHHHHHHHHHCCCc---EEEEecCC
Confidence 5666789999995 99999999999999886 99998764
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=88.31 E-value=0.46 Score=47.81 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
.|+|||+|..|+-+|..+++.|.+|+++++.+.+
T Consensus 43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~ 76 (510)
T 4at0_A 43 DVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76 (510)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 6999999999999999999999999999988654
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.31 E-value=0.24 Score=46.46 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~ 41 (461)
.++|.|||.|.-|...|..|++.| ++ |+++++++
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~---V~~~dr~~ 58 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAAR---LAAYDLRF 58 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSE---EEEECGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCe---EEEEeCCC
Confidence 468999999999999999999998 76 99999874
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=88.14 E-value=0.65 Score=44.82 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..++|+|||+|..|..++..+++.|++ |.+++..+.
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~~~G~~---vi~~d~~~~ 48 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAKEMGYK---IAVLDPTKN 48 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCE---EEEEeCCCC
Confidence 356899999999999999999999997 999998754
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.11 E-value=0.51 Score=44.03 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+++|.|||.|.-|...|..|++.|++ |+++++++
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~---V~~~dr~~ 54 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFK---VTVWNRTL 54 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSG
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence 46899999999999999999999986 99999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 461 | ||||
| d1nhpa2 | 123 | c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus | 2e-24 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 8e-24 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 2e-23 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 2e-22 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 9e-19 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 3e-17 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 5e-17 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 0.003 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 1e-14 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 2e-14 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 3e-09 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 7e-14 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 3e-13 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 5e-13 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 1e-11 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 6e-11 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 2e-10 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 5e-10 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 7e-10 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 2e-09 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 2e-09 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 4e-09 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 6e-09 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 6e-09 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 6e-08 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 2e-07 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 2e-07 | |
| d1d7ya3 | 97 | d.87.1.1 (A:309-405) NADH-dependent ferredoxin red | 6e-07 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 8e-07 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 1e-06 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 5e-06 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 4e-05 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 5e-05 | |
| d1q1ra3 | 103 | d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu | 6e-05 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 8e-05 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 9e-05 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 1e-04 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 1e-04 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 4e-04 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 7e-04 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 8e-04 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 8e-04 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 9e-04 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 0.001 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 0.002 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 0.003 |
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 96.1 bits (238), Expect = 2e-24
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 3/126 (2%)
Query: 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220
+ G D NI+ +R A KL + + VV+G GYIG+E + A V+++
Sbjct: 1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 60
Query: 221 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 280
+ + I I G + DG V++V + D +AD
Sbjct: 61 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 117
Query: 281 IVVVGV 286
+VVV V
Sbjct: 118 LVVVAV 123
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 94.0 bits (233), Expect = 8e-24
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220
++GA + LR ++DA ++ ++ + + ++VGGG IGLEL+A + + VS+V
Sbjct: 4 LQGATM-PVHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVE 60
Query: 221 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 280
+P M R A +A F Y+A +G+ + G V L DG + AD
Sbjct: 61 TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGS------VDGVVLLDDGTRIAAD 114
Query: 281 IVVVGVG 287
+VVVG+G
Sbjct: 115 MVVVGIG 121
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.7 bits (232), Expect = 2e-23
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 146 RTLPLFQVLRLTDFGVEGADAK-NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 204
R+L GA+ K R+I D L + + K ++GGG++G E
Sbjct: 2 RSLSAIDRA--------GAEVKSRTTLFRKIGDFRSLEKISREVK--SITIIGGGFLGSE 51
Query: 205 LSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260
L+ AL +V ++PE M ++ ++ + +G+K++ +
Sbjct: 52 LACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVG- 110
Query: 261 NADGEVKEVKLKDGRTLEADIVVVGVG 287
+KLKDGR +E D +V VG
Sbjct: 111 -VSSGKLLIKLKDGRKVETDHIVAAVG 136
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 90.4 bits (223), Expect = 2e-22
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 146 RTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 205
R LP+ G G A N YLR ++DA+ + + A + VV+GGGYIGLE+
Sbjct: 1 RPLPVA-------SGAVG-KANNFRYLRTLEDAECIRRQLIADN--RLVVIGGGYIGLEV 50
Query: 206 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG- 264
+A N+ V+++ + R+ ++AFYE + G+ I GT GF + D
Sbjct: 51 AATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQ 110
Query: 265 EVKEVKLKDGRTLEADIVVVGVG 287
+V V +DG L AD+V+ G+G
Sbjct: 111 KVTAVLCEDGTRLPADLVIAGIG 133
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 81.7 bits (200), Expect = 9e-19
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 13/181 (7%)
Query: 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIK 248
N V+VG G G+E++ L+ + + ++ +P A+ G + +
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 249 IIKGTVAVGF---------TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFK 296
+ T + + ++V L DGR L+ D +V+ GGRPL L
Sbjct: 63 LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122
Query: 297 GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 356
+ GI ++ +TS + AVGD A F +LY R+E V +A + A + +
Sbjct: 123 AAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAIL 182
Query: 357 M 357
Sbjct: 183 C 183
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 75.5 bits (185), Expect = 3e-17
Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220
++G + + LR I DAD++ E+I+ +++GGG+IGLEL+ L V +++
Sbjct: 7 IKGKE--YLLTLRTIFDADRIKESIENSGEA--IIIGGGFIGLELAGNLAEAGYHVKLIH 62
Query: 221 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 280
+ +++ + G+K + + +E L + +E
Sbjct: 63 RGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEAN-------EEGVLTNSGFIEGK 113
Query: 281 IVVVGVG 287
+ + +G
Sbjct: 114 VKICAIG 120
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 76.7 bits (187), Expect = 5e-17
Identities = 37/179 (20%), Positives = 58/179 (32%), Gaps = 19/179 (10%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYA 243
VV+G G + A L+ + + D
Sbjct: 7 VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66
Query: 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ----- 298
++ + G A F D + V L DGRTL +V+ G P L
Sbjct: 67 APEVEWLLGVTAQSF----DPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAA 122
Query: 299 VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357
GI D + +T+ DVYA+GDV L R+E +A+ + ++
Sbjct: 123 GLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV 181
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 36.2 bits (82), Expect = 0.003
Identities = 32/199 (16%), Positives = 65/199 (32%), Gaps = 38/199 (19%)
Query: 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGF 66
V+LG G+++ E + G + G + ++ EA PY+RP LSK ++
Sbjct: 5 PVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMAHGDA------ 57
Query: 67 HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126
E++ + + +E +L D + T+ + G Y LV+ATG+
Sbjct: 58 --------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 109
Query: 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK 186
L + + + + + D +
Sbjct: 110 RAVLA-------NDALARAAGLACDDGIFVDAY-----GRTTCPDVYALGDVTR------ 151
Query: 187 AKKNGKAVVVGGGYIGLEL 205
+ + G + +E
Sbjct: 152 -----QRNPLSGRFERIET 165
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 68.1 bits (165), Expect = 1e-14
Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 10/128 (7%)
Query: 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222
G +AK +F D LVE + + VVVGG +E M+
Sbjct: 1 GVNAKGVF------DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54
Query: 223 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV---KLKDGRTLEA 279
+ A+ +G++II G+ +A+G V+ V +E
Sbjct: 55 EPLKLI-KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET 113
Query: 280 DIVVVGVG 287
D V +G+G
Sbjct: 114 DFVFLGLG 121
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.1 bits (170), Expect = 2e-14
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 14/156 (8%)
Query: 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
A ++++GGG +A AAR + + I+S++ PY RP LSK F +
Sbjct: 1 APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPN 59
Query: 62 RLPGFHVCVGSGGERLLP-------------EWYKEKGIELILSTEIVRADIASKTLLSA 108
+G ER + + G+ ++ ++V+ D+ +
Sbjct: 60 VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 119
Query: 109 TGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFF 144
G Y+ +IATG T L F
Sbjct: 120 DGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFG 155
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 3e-09
Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 45/212 (21%)
Query: 187 AKKNGKAVVVGGGYIGLELSAALKINNID--VSMVYPEPW-------------------- 224
A + +++GGG + +++ + V +V +P
Sbjct: 1 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNV 60
Query: 225 ---------------CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 269
+ + ++A + N G+ ++ G V D V
Sbjct: 61 TKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQL----DVRDNMV 116
Query: 270 KLKDGRTLEADIVVVGVGGRPLISLFKGQVA---ENKGGIETDDFFKTSADDVYAVGDVA 326
KL DG + + ++ GG ++ G + + +++ GD A
Sbjct: 117 KLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAA 176
Query: 327 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358
F RRVEH DHA S A + +
Sbjct: 177 CFYDIKL-GRRRVEHHDHAVVSGRLAGENMTG 207
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 65.6 bits (159), Expect = 7e-14
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Query: 171 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 230
Y + D L + + VVG GYIG+EL + + +P
Sbjct: 7 YGIDSDGFFALPALPE-----RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFD 61
Query: 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287
E +G ++ + N DG + ++L+DGR+ D ++ +G
Sbjct: 62 PMISETLVE-VMNAEGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIG 116
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 63.6 bits (154), Expect = 3e-13
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 183 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242
E K++ K +VG GYI +EL +K ID + + + F + E
Sbjct: 15 EFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDM 73
Query: 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA-DIVVVGV 286
I I+ V +D + + L DGR E D V+ V
Sbjct: 74 KKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 117
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 65.7 bits (158), Expect = 5e-13
Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 24/190 (12%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPE------------PWCMPRLFT--ADIAAF 237
K +V+G + G E L + D + + E + +
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61
Query: 238 YEGYYANKGIKIIKGTVAVGFTTNADGEV-KEVKLKDGRTLEADIVVVGVGGRPLISLFK 296
++G+ + T K++ + R D +++ G P
Sbjct: 62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121
Query: 297 GQVAE---------NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARK 347
G I+TD++ +TS DV+AVGD + +ARK
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181
Query: 348 SAEQAVKTIM 357
AVK +
Sbjct: 182 QGRFAVKNLE 191
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 59.1 bits (142), Expect = 1e-11
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIK 248
+A+ VGGGYI +E + V + R F +++ GI
Sbjct: 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78
Query: 249 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287
+ T NADG + V + G + D+V++ +G
Sbjct: 79 VRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIG 116
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.4 bits (138), Expect = 6e-11
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
GK +VVG Y+ LE + L +DV+++ F D+A + GIK I
Sbjct: 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78
Query: 251 KGTVAVGFTTNADGEVKEVKL-------KDGRTLEADIVVVGVG 287
+ V G +K+ ++ E + V++ VG
Sbjct: 79 RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 56.0 bits (134), Expect = 2e-10
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 191 GKAVVVGGGYIGLELSAAL---KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247
+ + VGGG+I +E + K + V++ Y + F + GI
Sbjct: 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGI 79
Query: 248 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286
+I+ NADG K V + G+ ++ D+V++ +
Sbjct: 80 QILTKENPAKVELNADG-SKSVTFESGKKMDFDLVMMAI 117
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.8 bits (131), Expect = 5e-10
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 219
G+E D + I ++ + + ++GGG IGLE+ + V++V
Sbjct: 2 GIE-IDEEKIVSSTGALSLKEIPK--------RLTIIGGGIIGLEMGSVYSRLGSKVTVV 52
Query: 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR---- 275
+P ++A + + +G+ T + N D V E+ ++D +
Sbjct: 53 EFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQ 111
Query: 276 -TLEADIVVV 284
LEA++++V
Sbjct: 112 ENLEAEVLLV 121
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 54.5 bits (130), Expect = 7e-10
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 175 IDDADKLV---EAIKAKKN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 230
I + +++ A+ K+ GK +++GGG IGLE+ + +V M
Sbjct: 7 IPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGAD 66
Query: 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVG 287
+ + + + I+ T V DG + + D V+V G
Sbjct: 67 RDLVKVWQK-QNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 54.8 bits (131), Expect = 2e-09
Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 21/164 (12%)
Query: 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA---AFYEGYYANK 245
K+ K +++G G G + N+ ++ T ++
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63
Query: 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDG--------RTLEADIVVVGVGGRP-----LI 292
++ + T + +V L++ D +++ G
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123
Query: 293 SLFKGQVAENKGGIETD-----DFFKTSADDVYAVGDVATFPMK 331
++F+GQ+ G I+ + +TS V+A GDV +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 52.9 bits (126), Expect = 2e-09
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
VVVGGGYIGLEL A + VS+V +P + A E GI +
Sbjct: 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAE-SLKKLGIALH 80
Query: 251 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287
G G+ + LEAD V+V VG
Sbjct: 81 LGHSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVG 115
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 4e-09
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250
G++V+VG GYI +E++ L S++ + + E N G++++
Sbjct: 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTE-ELENAGVEVL 81
Query: 251 KGTVAVGFTTNADG-EVKEVKLKDGR------TLEADIVVVGVG 287
K + G EV V GR + D ++ +G
Sbjct: 82 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 51.7 bits (123), Expect = 6e-09
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)
Query: 165 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224
D I D + K V+G G IGLEL + +V+++
Sbjct: 5 DQDVIVDSTGALDFQNVPG--------KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56
Query: 225 CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIVV 283
+P +A + +G+KI+ G G VK V + ++ D ++
Sbjct: 57 FLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLI 115
Query: 284 VGVG 287
V VG
Sbjct: 116 VAVG 119
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 52.8 bits (125), Expect = 6e-09
Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 14/173 (8%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
K V+VG G G EL+ L +V+++ EP +
Sbjct: 2 KVVIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 252 ------GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG 305
+ + ++V + + + D +V+ G + L + G
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPN-VDLARRSGIHTGRG 119
Query: 306 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358
I DD F+TSA DVYA+GD A + A + A +
Sbjct: 120 ILIDDNFRTSAKDVYAIGDCAEYS------GIIAGTAKAAMEQARVLADILKG 166
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 51.5 bits (122), Expect = 6e-08
Identities = 38/222 (17%), Positives = 66/222 (29%), Gaps = 57/222 (25%)
Query: 166 AKNIFYLREIDDADKLVEAIKA--KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223
A I + E D +++ + + A+ +GGG G SA L+ +V P
Sbjct: 16 ATRIDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75
Query: 224 W---------CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-- 272
+ C+P +D AA G ++
Sbjct: 76 FLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGP 135
Query: 273 --------------------------------DGRTLEADIVVVGVGGRPLI-------- 292
G+ +A +++ VG P
Sbjct: 136 HGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPR 195
Query: 293 ----SLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 330
+ G KG + +++ +TS +VYAVGD+ PM
Sbjct: 196 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM 237
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 48.0 bits (113), Expect = 2e-07
Identities = 20/150 (13%), Positives = 38/150 (25%), Gaps = 21/150 (14%)
Query: 155 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 214
LT + GADA L + + I + + ++ L+ L
Sbjct: 9 CLTHDPIPGADASLPDQLT-PEQVMDGKKKIGKRVV--ILNADTYFMAPSLAEKLATAGH 65
Query: 215 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN------------- 261
+V++V FT + ++ +
Sbjct: 66 EVTIVSGVHLANYMHFTLEYPNMMR-RLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSK 124
Query: 262 ----ADGEVKEVKLKDGRTLEADIVVVGVG 287
G R +E D +V+ G
Sbjct: 125 RTYRGPGVSPRDANTSHRWIEFDSLVLVTG 154
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 48.6 bits (114), Expect = 2e-07
Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 24/189 (12%)
Query: 192 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 249
K VVVGGG G + +K+ +I+V+++ P + ++ + K
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63
Query: 250 IKGTVAVGFTTNADGEVKEVKLK----DGRTLEADIVVVGVGGRP---LISLFKGQVAEN 302
+ ++ + K G D VV G I G++A+
Sbjct: 64 GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123
Query: 303 KG--------GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVK 354
G ++ F + ++ +GD + M + + A + A
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI-----ANPMPKSGYS--ANSQGKVAAA 176
Query: 355 TIMATEGGK 363
++ G+
Sbjct: 177 AVVVLLKGE 185
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 45.2 bits (107), Expect = 6e-07
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 364 TVTGYDYLPYFYSRAFDLSWQFYGDN-VGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 421
T GY LP+++S L Q G + ++ G+ L + KF ++ G++VG
Sbjct: 1 TAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDA--PKFTLIELQKGRIVGA 57
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 45.6 bits (107), Expect = 8e-07
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251
VV+GGGYIG+EL A V+++ + F +AA + KG++++
Sbjct: 24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVT 82
Query: 252 GTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVV 284
+A G DG V + +T++AD V+V
Sbjct: 83 NALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 36/330 (10%), Positives = 91/330 (27%), Gaps = 15/330 (4%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV----APYERPALSKAYLF 56
M E+ + ++LG G++ + + G K + + + + P F
Sbjct: 3 MDEE-YDVIVLGTGLTECILSGIMSVNGKK---VLHMDRNPYYGGESSSITPLEELYKRF 58
Query: 57 PEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQ 116
+ + + +L V + K + +
Sbjct: 59 QLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKI 118
Query: 117 ILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREID 176
V +T + ++L + K F + + T GV+ + R+ D
Sbjct: 119 YKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFD 178
Query: 177 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 236
+++ LE +K+ + ++ P+ P ++
Sbjct: 179 LGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQ 238
Query: 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP----LI 292
+ A G + + +G ++ P +
Sbjct: 239 GFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSEGEVARCKQLICDPSYVPDRVPID 296
Query: 293 SLFKGQVAENKGGIETDDFFKTSADDVYAV 322
+ QV + + F+T+ +D+ +
Sbjct: 297 DGSESQVFCSC-SYDATTHFETTCNDIKDI 325
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 45.2 bits (106), Expect = 5e-06
Identities = 30/191 (15%), Positives = 48/191 (25%), Gaps = 54/191 (28%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEP------------------------------ 223
+VVG G G + V++V
Sbjct: 7 LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66
Query: 224 ----------------WCMPRLFTADIAAFYEGYYANKGIKIIKGT----VAVGFTTNAD 263
+ EG ++I+KG A
Sbjct: 67 EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126
Query: 264 GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKTSADDV 319
+ K+ + VG RP G N+G IE D +TS ++
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI 186
Query: 320 YAVGDVATFPM 330
+A+GD+ P
Sbjct: 187 FAIGDIVPGPA 197
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (100), Expect = 4e-05
Identities = 16/116 (13%), Positives = 27/116 (23%), Gaps = 8/116 (6%)
Query: 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKG 304
K + G + G +V + + KG +
Sbjct: 202 KNDGTRDLSQKHGVILSTTGHDGP------FGAFCAKRIVDIDQNQKLGGMKGLDMNHAE 255
Query: 305 G-IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH-VDHARKSAEQAVKTIMA 358
+ D++Y G L R +AEQ +K A
Sbjct: 256 HDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 311
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 41.8 bits (97), Expect = 5e-05
Identities = 30/166 (18%), Positives = 47/166 (28%), Gaps = 23/166 (13%)
Query: 189 KNGKAVVVGGGYIGLE-----LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243
N + +VG G A LK + M T D+ F
Sbjct: 4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEG 63
Query: 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----------TLEADIVVVGVGGR--- 289
G+++ + V D + AD V++ +G
Sbjct: 64 ILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKG 123
Query: 290 --PLISLFKGQVAENKGG-IETD-DFFKTSADDVYAVGDVATFPMK 331
P G V + G + T +TS V+A GDV +
Sbjct: 124 HEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 39.8 bits (93), Expect = 6e-05
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 368 YDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGV 421
+ P+F+S +++ + G + G ++ G F ++++ +V+ V
Sbjct: 4 DEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAV 55
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 41.9 bits (97), Expect = 8e-05
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 241 YYANKGIKIIKGT-VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL-------- 291
+ +G+ +G T E + TL+ + +++ G P
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPR 172
Query: 292 ---ISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYREMR 337
+ L K V K G I+ D + KT+ D++YA+GDV M +
Sbjct: 173 SQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAIN 222
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 41.6 bits (96), Expect = 9e-05
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 292 ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR 337
+ L V GG++ D++ +T+ ++YA+GDV M +
Sbjct: 176 LQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAIN 221
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 211 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 270
+ +V + +++ EG + + +KG G + +
Sbjct: 72 VKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGY---GKFVSPSEISVDTI 128
Query: 271 LKDGRTLEADIVVVGVGGRPL--------ISLFKGQVA-ENKGGIETDDFFKTSADDVYA 321
+ ++ +++ G ++L K V + G I ++ F T+ VYA
Sbjct: 129 EGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYA 188
Query: 322 VGDVATFPM 330
+GDV PM
Sbjct: 189 IGDVIPGPM 197
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 297 GQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 330
G ++G IE D +T+ +YA+GD+ PM
Sbjct: 172 GVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 205
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.7 bits (91), Expect = 4e-04
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 302 NKGGIETDDFFKTSADDVYAVGDVATFPM 330
+ D +T A +YA GD
Sbjct: 180 RGNYLTVDRVSRTLATGIYAAGDCTGLLP 208
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (87), Expect = 7e-04
Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 16/154 (10%)
Query: 194 VVVGGGYIGLELSAALKINNIDVSMVYPEP----------WCMPRLFTADIAAFYEGY-- 241
++VG G G + I ++ + +
Sbjct: 5 LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64
Query: 242 ----YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 297
Y I + + E + IV G L
Sbjct: 65 HVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGA 124
Query: 298 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 331
G I D +T+ V+A GD T P K
Sbjct: 125 VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 38.5 bits (88), Expect = 8e-04
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 14/131 (10%)
Query: 211 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 270
I+ +V++ P ++ G+ + +G + + +
Sbjct: 78 ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGS 137
Query: 271 LKDGRTLEADIVVVGVGGRP-----------LISLFKGQVAENKGGIETDDFFKTSADDV 319
+ L+ + V++ G +P L++ G + +G I DD+ TS V
Sbjct: 138 ---SQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGV 194
Query: 320 YAVGDVATFPM 330
YA+GDV M
Sbjct: 195 YAIGDVVRGAM 205
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.0 bits (89), Expect = 8e-04
Identities = 34/292 (11%), Positives = 72/292 (24%), Gaps = 16/292 (5%)
Query: 3 EKSFKYVILGGGVSAGYAAREFAKQGVKP----------GELAIISKEAVAPYERPALSK 52
+ + ++LG G++ + + G K GE A ++ + +
Sbjct: 3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 62
Query: 53 AYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLI 112
+ ++V + + IL V + K + +
Sbjct: 63 KEERESKFGKDRDWNVDLIP------KFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK 116
Query: 113 FKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYL 172
V A + L I K + F + T G++
Sbjct: 117 QGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVY 176
Query: 173 REIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA 232
+ + E I + + V+ P+ P
Sbjct: 177 YKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLG 236
Query: 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284
++ + A G + T D E T +A +V+
Sbjct: 237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA 288
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 38.2 bits (87), Expect = 9e-04
Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 16/197 (8%)
Query: 188 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVY---PEPWCMPRLFTADIAAFYEGYYAN 244
+ K ++G G + ++ L ++ + Y+
Sbjct: 2 AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFE 61
Query: 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ-----V 299
+ + V + + + +A + +G+ K
Sbjct: 62 IEL-MKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKF 120
Query: 300 AENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359
+ +TS V+A GD+ VE V+ ++++ K I A
Sbjct: 121 NRWDLPEVDPETMQTSEPWVFAGGDIVGMA------NTTVESVNDGKQASWYIHKYIQA- 173
Query: 360 EGGKTVTGYDYLPYFYS 376
+ G +V+ LP FY+
Sbjct: 174 QYGASVSAKPELPLFYT 190
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 0.001
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 303 KGGIETDDFFKTSADDVYAVGDVATFPM 330
KG I D+F T+ +YAVGDV +
Sbjct: 168 KGHIIVDEFQNTNVKGIYAVGDVCGKAL 195
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (84), Expect = 0.002
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 304 GGIETDDFFKTSADDVYAVGDVATFPMKL 332
G I D +T+ +YA+GD+ ++L
Sbjct: 183 GKIPVTDEEQTNVPYIYAIGDILEGKLEL 211
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (85), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 302 NKGGIETDDFFKTSADDVYAVGDVATFPM 330
+G + DD F + + VGDV PM
Sbjct: 181 KRGRLVIDDQFNSKFPHIKVVGDVTFGPM 209
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 461 | |||
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.89 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.87 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.87 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.86 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.86 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.85 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.83 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.83 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.77 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.77 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.77 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.76 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.76 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.76 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.75 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.74 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.74 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.73 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.73 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.73 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.72 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.72 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.72 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.71 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.69 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.69 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.68 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.67 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.66 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.66 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.65 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.65 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.64 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.64 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.63 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.6 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.57 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.56 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.52 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.52 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.5 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.5 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.48 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.47 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.47 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.45 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.39 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.38 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.35 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.27 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.27 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.27 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.25 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.24 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.21 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.2 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.2 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.2 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.19 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.19 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.18 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.16 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.16 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.14 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.13 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.12 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.12 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.09 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.05 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.02 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.01 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.0 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.98 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.98 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.97 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.97 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.95 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.95 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.95 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.94 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.93 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.92 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.91 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.9 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.89 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.89 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.89 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.88 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.88 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.88 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.83 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.82 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.81 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.8 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.8 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.78 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.76 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.75 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.75 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.74 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.72 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.72 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.71 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.71 | |
| d1d7ya3 | 97 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.71 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.69 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.69 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.68 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.67 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.66 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.66 | |
| d1q1ra3 | 103 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.65 | |
| d3grsa3 | 115 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.62 | |
| d1v59a3 | 123 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.6 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.57 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.55 | |
| d1dxla3 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.54 | |
| d1gesa3 | 115 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.54 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 98.52 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.52 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.51 | |
| d3lada3 | 124 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.5 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.49 | |
| d1onfa3 | 119 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.48 | |
| d1feca3 | 128 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.44 | |
| d1ojta3 | 128 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.43 | |
| d1ebda3 | 115 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.39 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.39 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.38 | |
| d1xdia2 | 118 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.37 | |
| d1lvla3 | 123 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.35 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.34 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.34 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.32 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.29 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.27 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.26 | |
| d1h6va3 | 133 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.26 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.25 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.21 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.2 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.19 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.18 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.17 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.13 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.11 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 98.11 | |
| d1mo9a3 | 140 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.09 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.05 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.05 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.02 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 97.99 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.96 | |
| d1nhpa3 | 126 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 97.94 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.9 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.83 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.8 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.72 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.71 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.71 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.71 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.7 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.69 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.62 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.56 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.53 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.53 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.44 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.4 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.32 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.25 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.25 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 97.22 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.13 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.06 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 97.04 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.04 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 96.96 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.88 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.66 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 96.65 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.51 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.42 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 96.39 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.2 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.11 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.99 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.96 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.96 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.93 | |
| d1m6ia3 | 131 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 95.87 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.81 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.78 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 95.75 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.68 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.67 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.59 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.41 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.32 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.25 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.16 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.15 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.08 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 95.01 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.0 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 94.99 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 94.9 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 94.86 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.78 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.7 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.6 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.59 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.57 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 94.42 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.34 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.15 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.06 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.02 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.0 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 93.87 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 93.65 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.4 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 93.39 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 93.39 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 93.15 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.1 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 93.1 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 93.01 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.99 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.95 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.86 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 92.85 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 92.8 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 92.67 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 92.6 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 92.53 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 92.47 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.26 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 92.18 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 92.18 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.17 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.07 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 92.06 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.04 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 91.81 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 91.73 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 91.72 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.68 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 91.68 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 91.66 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 91.56 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 91.25 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 91.14 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 90.94 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.86 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 90.84 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 90.76 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 90.75 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.71 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.59 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.35 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.1 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.1 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.03 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 89.56 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 89.43 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 89.27 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 89.27 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 89.18 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 88.97 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.88 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 88.73 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 88.61 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.6 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.26 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.23 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 88.07 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 87.91 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 87.87 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 87.87 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 87.85 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 87.75 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.7 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 87.62 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 87.53 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 87.46 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 87.32 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 87.28 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 87.09 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 86.91 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 86.72 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 86.64 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 86.56 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 86.41 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 86.27 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.2 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 86.08 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 86.0 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 85.76 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 85.71 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.71 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 85.64 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 85.6 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 85.51 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 85.27 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 85.27 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 85.22 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 85.21 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 85.08 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 85.04 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 84.76 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 84.53 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 84.29 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 84.26 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 84.19 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 84.1 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 84.04 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 83.97 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.48 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 83.41 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.1 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 82.99 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 82.98 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 82.83 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 82.64 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 82.52 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 82.49 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 82.45 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 82.38 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 82.37 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 82.2 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 82.02 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 81.88 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 81.65 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 81.64 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 81.15 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 80.9 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.74 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 80.44 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 80.43 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 80.36 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.22 |
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.89 E-value=2.1e-23 Score=182.31 Aligned_cols=163 Identities=22% Similarity=0.302 Sum_probs=128.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHH----------HHHHHhcCcEEEcCCcEEEEEe
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY----------EGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~----------~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+|+|||+|++|+|+|..|++.|.+++++.+.+.....+..+.+...+ .+.+...+|+++.+.+++++..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~ 83 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP 83 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence 469999999999999999999998877776655544432222222211 1233456899999999999976
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc------ccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG------QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 334 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~------~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~ 334 (461)
+.. .+.+++|+++++|.+|+|+|..|+..+.+. ++. .+++|.||+++||+.|+|||+|||+..+....+
T Consensus 84 --~~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~-~~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g 158 (183)
T d1d7ya1 84 --QAH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA-CDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSG 158 (183)
T ss_dssp --TTT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCC-BSSSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred --ccc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEe-eCCcEEeccceeccccccchhhhhhccceeeCC
Confidence 332 577899999999999999999998654432 222 356799999999999999999999998887777
Q ss_pred cceeeccHHHHHHHHHHHHHHHhc
Q 012545 335 EMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 335 ~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
...+++++..|..||+.||+||+.
T Consensus 159 ~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 159 RFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred ceechhHHHHHHHHHHHHHHHHcC
Confidence 777788999999999999999984
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=8.9e-22 Score=171.90 Aligned_cols=167 Identities=27% Similarity=0.405 Sum_probs=131.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCccc--------------CHHHHHHHHHHHHhcCcEEEcCCc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF--------------TADIAAFYEGYYANKGIKIIKGTV 254 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~--------------~~~~~~~~~~~l~~~GV~v~~~~~ 254 (461)
..++|+|||+|++|+|+|..|+++|.+++++.+.+....... ...............++.+..+..
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ 81 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence 367999999999999999999999998887766554322111 111112234556777888888888
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC---hhhhhcccccCCCcEEeCCCCCCCCCCEEEeCcccccCcc
Q 012545 255 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 331 (461)
Q Consensus 255 v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~---~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~ 331 (461)
++.+.. +. ..+.+.++.++++|.+++++|.+|+ ..+.+......++++.||++|||+.|+|||+|||+..+..
T Consensus 82 ~~~~~~--~~--~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ts~~~vya~GD~~~~~~~ 157 (185)
T d1q1ra1 82 VTAINR--DR--QQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQ 157 (185)
T ss_dssp EEEEET--TT--TEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEEEEET
T ss_pred eeeecc--cc--cEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccccchhhhhcchhhhccccc
Confidence 888865 32 2578889999999999999998774 4454444334568899999999999999999999999888
Q ss_pred ccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 332 LYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 332 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.++.+.+++++..|.+||+.||+||+|+
T Consensus 158 ~~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 158 LYDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp TTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred cCCcccchhhHHHHHHHHHHHHHHccCC
Confidence 8888888899999999999999999873
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.87 E-value=1.1e-21 Score=173.43 Aligned_cols=165 Identities=22% Similarity=0.296 Sum_probs=128.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCcccCHHH--------------HHHHHHHHHhcCcEEEcCCcE
Q 012545 192 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTADI--------------AAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~~~~~~~--------------~~~~~~~l~~~GV~v~~~~~v 255 (461)
+|+|||+|++|+|+|..|++.+ .+|+++++.+.+.. .+..+ .....+.++++||+++++++|
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V 79 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI 79 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc--cccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence 6999999999999999999874 57999998775421 12111 122356788999999999999
Q ss_pred EEEEecCCCCEEEEE-eCCCc--EEecCEEEEccCCC--------CChhhhhccccc-CCCcEEeCCCCCCCCCCEEEeC
Q 012545 256 VGFTTNADGEVKEVK-LKDGR--TLEADIVVVGVGGR--------PLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVG 323 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~-~~~G~--~i~aD~vi~a~G~~--------p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vya~G 323 (461)
++++. ++....+. +.+|+ ++++|.+|+|+|.. |+..+++.++.. ++|+|.||+++||+.|+|||+|
T Consensus 80 ~~i~~--~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~G 157 (198)
T d1nhpa1 80 TAIQP--KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVG 157 (198)
T ss_dssp EEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred eeEee--ccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEec
Confidence 99986 33323333 34554 57899999999865 456666666655 7899999999999999999999
Q ss_pred cccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 324 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 324 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
||+..+....+...+++++..|.+||+.||+||.+..
T Consensus 158 D~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~ 194 (198)
T d1nhpa1 158 DATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV 194 (198)
T ss_dssp GGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred ceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence 9999877666766777889999999999999987643
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.86 E-value=4.1e-21 Score=154.58 Aligned_cols=118 Identities=35% Similarity=0.609 Sum_probs=108.4
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
+||.+.+ ++++++++|+.++++.++ ++++++|||+|++|+|+|..|+++|.+||++++.+++++..+++++++.+.+
T Consensus 4 ipG~~~~-v~~lrtl~Da~~l~~~~~--~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~ 80 (121)
T d1d7ya2 4 LQGATMP-VHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 80 (121)
T ss_dssp GTTCSSC-EEECCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred CCCCCCC-EEEeCCHHHHHHHHHhhh--cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence 5666544 999999999999999886 4789999999999999999999999999999999999987789999999999
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.++++||++++++.|+++.. + .++++||++++||.||+|+|
T Consensus 81 ~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 81 YHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred HHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence 99999999999999999864 3 57899999999999999998
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.86 E-value=3.5e-21 Score=165.28 Aligned_cols=153 Identities=25% Similarity=0.345 Sum_probs=118.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHH-------------HHHHHHHHhcCcEEEcCCcEEEE
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA-------------AFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~-------------~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
||+|||+|++|+|+|..|++ +.+||++++.+.+.. ..+.+. ....+.+++.++++++++.++++
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 78 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI 78 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence 79999999999999999975 679999998765432 122221 22246678889999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCccee
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 338 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~ 338 (461)
+. +.. +.+.++.++++|.+++|+|..|+......++..+ ++|.||+++||+.|+|||+|||+..+...
T Consensus 79 ~~--~~~---~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~------ 146 (167)
T d1xhca1 79 DR--GRK---VVITEKGEVPYDTLVLATGAPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------ 146 (167)
T ss_dssp ET--TTT---EEEESSCEEECSEEEECCCEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------
T ss_pred cc--ccc---cccccccccccceeEEEEEecCCchhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE------
Confidence 74 332 4456777899999999999987654445556554 45999999999999999999999876432
Q ss_pred eccHHHHHHHHHHHHHHHhcc
Q 012545 339 VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 339 ~~~~~~A~~~g~~aa~~i~~~ 359 (461)
++.+..|..||+.+|+||+++
T Consensus 147 ~~~~~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 147 AGTAKAAMEQARVLADILKGE 167 (167)
T ss_dssp CCSHHHHHHHHHHHHHHHTTC
T ss_pred EChHHHHHHHHHHHHHHcCCC
Confidence 257888999999999999863
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.85 E-value=1e-20 Score=152.99 Aligned_cols=123 Identities=26% Similarity=0.392 Sum_probs=111.6
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
+||.+.++++++++++++.++++.+....+++++|+|+|++|+|+|..|+++|.+||++++.++++++.+++++.+.+.+
T Consensus 1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~ 80 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE 80 (123)
T ss_dssp STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence 36677889999999999999999998777899999999999999999999999999999999999998789999999999
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
.++++||++++++.+++++. ++.+..+ +.||++++||.||+|+
T Consensus 81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV 123 (123)
T ss_dssp HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence 99999999999999999986 4544344 6788899999999985
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=2.3e-20 Score=153.00 Aligned_cols=120 Identities=34% Similarity=0.617 Sum_probs=111.1
Q ss_pred CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhc
Q 012545 166 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 245 (461)
Q Consensus 166 ~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (461)
.++++++++++|+.++++.+. .+++++|||+|++|+|+|..|++.|.+||++++.+++++..+++++.+.+++.++++
T Consensus 13 ~~~v~~lr~~~d~~~l~~~~~--~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~ 90 (133)
T d1q1ra2 13 ANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREA 90 (133)
T ss_dssp STTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCeeEeCCHHHHHHHHHhhc--cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccc
Confidence 568999999999999988876 478999999999999999999999999999999999999878999999999999999
Q ss_pred CcEEEcCCcEEEEEecC-CCCEEEEEeCCCcEEecCEEEEccC
Q 012545 246 GIKIIKGTVAVGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 246 GV~v~~~~~v~~i~~~~-~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
||++++++++++++... ++.+..+.++||+++++|.||+|+|
T Consensus 91 GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 91 GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred ccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 99999999999998743 4567789999999999999999998
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.4e-21 Score=172.97 Aligned_cols=164 Identities=22% Similarity=0.343 Sum_probs=125.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--cEEEEccCCccC------Cccc---------------------------CHH--
Q 012545 191 GKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCM------PRLF---------------------------TAD-- 233 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~------~~~~---------------------------~~~-- 233 (461)
.+++|||+|++|+++|..|++.+. +|+++.+.+.+- +..+ +++
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 84 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence 468999999999999999998764 599997754421 0000 000
Q ss_pred HHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh-hhh-hccccc--CCCcEEeC
Q 012545 234 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI-SLF-KGQVAE--NKGGIETD 309 (461)
Q Consensus 234 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~-~~~-~~~~~~--~~g~i~vd 309 (461)
........+++.||+++++++|++|+. +.+ .|+++||+++++|.+|+|+|..|+. ++. ..++.. ..++|.||
T Consensus 85 ~~~~~~~~~~~~gI~~~~g~~V~~id~--~~~--~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd 160 (213)
T d1m6ia1 85 VSAQDLPHIENGGVAVLTGKKVVQLDV--RDN--MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVN 160 (213)
T ss_dssp BCTTTTTTSTTCEEEEEETCCEEEEEG--GGT--EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECC
T ss_pred hhhhhHHHHHHCCeEEEeCCEEEEeec--cCc--eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhh
Confidence 011112345678999999999999976 332 6889999999999999999976554 443 334544 45899999
Q ss_pred CCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 310 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 310 ~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++|||+ |+|||+|||+..+....+. .+++++..|..||+.||+||++..
T Consensus 161 ~~l~~~-~~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~~ 209 (213)
T d1m6ia1 161 AELQAR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGAA 209 (213)
T ss_dssp TTCEEE-TTEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred HhcCcC-CceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCCC
Confidence 999998 9999999999988765554 567899999999999999999864
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=2.4e-19 Score=162.32 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=81.1
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEec--CCCCEEEEEeCCCc--EEecCEEEEccCCCCChhhh------------hcccc
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTN--ADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF------------KGQVA 300 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~--~~g~~~~v~~~~G~--~i~aD~vi~a~G~~p~~~~~------------~~~~~ 300 (461)
.+...++..||+++.+... -+... .......+...+|+ ++++|.+|+|+|.+|..... ..+++
T Consensus 99 ~~~~~~~~~gV~vi~G~~~-~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~ 177 (233)
T d1xdia1 99 DITAQLLSMGVQVIAGRGE-LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQ 177 (233)
T ss_dssp HHHHHHHHTTCEEEESEEE-ECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCC
T ss_pred ceehhhcccceeEEECccc-ccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhc
Confidence 3456678888888765321 11110 01123456666774 68999999999998865322 23445
Q ss_pred c-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 301 E-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 301 ~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
. ++|+|.||++|||+.|+|||+|||++.+ .....|..+|++||.|+++..
T Consensus 178 ~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~----------~l~~~A~~~g~~aa~~~~g~~ 228 (233)
T d1xdia1 178 LGRGNYLTVDRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEG 228 (233)
T ss_dssp CBTTTBCCCCSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCcCCcCCCcccCCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHHHHcCCC
Confidence 5 5788999999999999999999999865 456779999999999999753
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=8.8e-20 Score=163.82 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=46.5
Q ss_pred ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 297 GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 297 ~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.++.. ++|+|.||+++|||.|+|||+|||++.+ .....|..+|+.||++|++..
T Consensus 161 ~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~l~~~A~~~G~~aa~~~~~~~ 215 (221)
T d3grsa1 161 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYK 215 (221)
T ss_dssp TTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSS----------CCHHHHHHHHHHHHHHHHSCC
T ss_pred cCcEECCCccEEeCCCccccCCcEEEEEEccCCc----------CcHHHHHHHHHHHHHHHcCCC
Confidence 45565 6789999999999999999999999865 356678999999999999865
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=5.7e-18 Score=139.46 Aligned_cols=118 Identities=25% Similarity=0.413 Sum_probs=107.0
Q ss_pred CCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHH----CCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 167 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI----NNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 167 ~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~----~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
++++.+++++|+.++.+.++. .++++|||+|++|+|+|..|.+ .|.+|+++++.+++++..+++++++.+.+.+
T Consensus 16 ~~~~~~r~~~d~~~l~~~~~~--~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l 93 (137)
T d1m6ia2 16 SRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV 93 (137)
T ss_dssp HTEEECCSHHHHHHHHHHHHH--CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred CcEEEEcCHHHHHHHHHHhhc--CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHH
Confidence 568899999999999998874 7899999999999999999964 5899999999999998879999999999999
Q ss_pred HhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 243 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 243 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
+++||++++++.|++++.+ +....++++||++++||.||+|+|.
T Consensus 94 ~~~GV~~~~~~~V~~i~~~--~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 94 RREGVKVMPNAIVQSVGVS--SGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp HTTTCEEECSCCEEEEEEE--TTEEEEEETTSCEEEESEEEECCCE
T ss_pred HhCCcEEEeCCEEEEEEec--CCEEEEEECCCCEEECCEEEEeecC
Confidence 9999999999999999873 3335799999999999999999993
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.76 E-value=1.9e-18 Score=137.93 Aligned_cols=96 Identities=26% Similarity=0.357 Sum_probs=88.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++++.+.+.|+++||+++++++|++++..+++. ..
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~~ 98 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LS 98 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EE
T ss_pred CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCe-EE
Confidence 4789999999999999999999999999999999999976 899999999999999999999999999999756664 47
Q ss_pred EEeCCCcEEe-cCEEEEcc
Q 012545 269 VKLKDGRTLE-ADIVVVGV 286 (461)
Q Consensus 269 v~~~~G~~i~-aD~vi~a~ 286 (461)
+++++|++++ +|.|++|+
T Consensus 99 v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 99 IHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EEETTSCEEEEESEEEECC
T ss_pred EEECCCCEEEeCCEEEEeC
Confidence 8999998875 69999985
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.6e-18 Score=137.18 Aligned_cols=97 Identities=23% Similarity=0.383 Sum_probs=90.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+++.+.|+++||++++++.|+++..++++.+ .
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~-~ 97 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-T 97 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCE-E
T ss_pred CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEE-E
Confidence 5799999999999999999999999999999999999987 8999999999999999999999999999998555554 6
Q ss_pred EEeCCCcEEecCEEEEccC
Q 012545 269 VKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G 287 (461)
+++++|+++++|.||+|+|
T Consensus 98 v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 98 LELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp EEETTSCEEEESEEEECSC
T ss_pred EEECCCCEEEcCEEEEecC
Confidence 8999999999999999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.76 E-value=1.5e-18 Score=139.93 Aligned_cols=115 Identities=24% Similarity=0.514 Sum_probs=102.7
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
+||. +++++++++.++.++.+.+.. +++++|+|+|++|+|+|..|+++|.+||++++.+++++ +++++++.+.+
T Consensus 7 ipG~--e~~~t~~~~~d~~~l~~~~~~--~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~~~~~~~ 80 (122)
T d1xhca2 7 IKGK--EYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKD 80 (122)
T ss_dssp SBTG--GGEECCCSHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHH
T ss_pred CCCc--cceEccCCHHHHHHHHHHhhc--CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHHHHHHHH
Confidence 6664 458999999999999998874 68999999999999999999999999999999999886 79999999999
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.|+++||++++++++++++. ++ + +.+++++++|.||+|+|.
T Consensus 81 ~l~~~GV~~~~~~~v~~~~~--~~----v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 81 MLEETGVKFFLNSELLEANE--EG----V-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHTTEEEECSCCEEEECS--SE----E-EETTEEEECSCEEEECCE
T ss_pred HHHHCCcEEEeCCEEEEEeC--CE----E-EeCCCEEECCEEEEEEEe
Confidence 99999999999999999864 32 3 457779999999999994
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.75 E-value=4.9e-18 Score=152.32 Aligned_cols=155 Identities=21% Similarity=0.268 Sum_probs=113.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc--------------------------C--------CcccCH----
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC--------------------------M--------PRLFTA---- 232 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~--------------------------~--------~~~~~~---- 232 (461)
..++|||+|+.|+++|..+++.|.+|+++++...- . ...+..
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ 83 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence 46899999999999999999999999999875410 0 000111
Q ss_pred --------HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe-CCCcEEecCEEEEc--------cCCCCChhhh
Q 012545 233 --------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGRTLEADIVVVG--------VGGRPLISLF 295 (461)
Q Consensus 233 --------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~G~~i~aD~vi~a--------~G~~p~~~~~ 295 (461)
.+.+.+...++..||+++.+. ..+.. +.. ..+.. .++.++.++.+|+| +|++||++.+
T Consensus 84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~--a~f~~--~~~-~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l 158 (223)
T d1ebda1 84 EWKASVVKKLTGGVEGLLKGNKVEIVKGE--AYFVD--ANT-VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDEL 158 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEESE--EEEEE--TTE-EEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSS
T ss_pred hHHHHHHHHHHhhHHHhhhccceeeeccE--EEEcc--Ccc-cceeccccceEEecccEEEEcCCCccccccceecCCCC
Confidence 122334556777899988663 23433 222 23333 34467899999998 4889998854
Q ss_pred ---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 296 ---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 296 ---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+.+++. ++|+|.||+++|||.|+|||+|||++.+ ..+..|..||+.||++|++..
T Consensus 159 ~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~~~~~A~~~g~~aa~~i~g~~ 217 (223)
T d1ebda1 159 GLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHP 217 (223)
T ss_dssp STTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCC
T ss_pred ChHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC
Confidence 445666 6899999999999999999999999876 357789999999999999754
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.74 E-value=4.3e-18 Score=156.70 Aligned_cols=152 Identities=23% Similarity=0.266 Sum_probs=107.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-------------------------------------cCH-H
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------------------------FTA-D 233 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------------------------------------~~~-~ 233 (461)
.++|||+|+.|+++|..++++|.+|+++++.+.+.... .+. .
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE 123 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence 59999999999999999999999999999877642210 000 0
Q ss_pred HHHH------------HHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh-----
Q 012545 234 IAAF------------YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK----- 296 (461)
Q Consensus 234 ~~~~------------~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~----- 296 (461)
..+. ..+.+...++....+... ++.. +. .+. .+|++++||.|++|+|.+|++..+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~d--~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~ 196 (261)
T d1mo9a1 124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA-KVID--NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRS 196 (261)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCC-EEEE--TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEECC
T ss_pred HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEE-EEee--ec---ccc-cccceEeeeeeeeccCCCCCcCcccccccc
Confidence 0000 112223333333333332 2221 11 122 3678999999999999999876442
Q ss_pred ------ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 297 ------GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 297 ------~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.+++. ++|+|.||++||||+|+|||+|||++.+ ..+..|..+|+.||.||++..
T Consensus 197 ~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~----------~l~~~A~~~G~~aa~~i~G~k 257 (261)
T d1mo9a1 197 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEK 257 (261)
T ss_dssp HHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCC
T ss_pred cccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHHHHCCCC
Confidence 24666 6899999999999999999999999876 357789999999999999864
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.74 E-value=1.2e-18 Score=140.51 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=88.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++++|+|+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.+++.++++||++++++++++++..+++....
T Consensus 25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~ 103 (125)
T d1ojta2 25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVT 103 (125)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEE
Confidence 5899999999999999999999999999999999999987 799999999999999999999999999999866664434
Q ss_pred EEeCCC--cEEecCEEEEccCC
Q 012545 269 VKLKDG--RTLEADIVVVGVGG 288 (461)
Q Consensus 269 v~~~~G--~~i~aD~vi~a~G~ 288 (461)
++..+| +++++|.|++|+|+
T Consensus 104 ~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 104 FEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EESSSCCSSCEEESCEEECCCE
T ss_pred EEeCCCCeEEEEcCEEEEecCC
Confidence 444444 47999999999995
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.73 E-value=7.5e-18 Score=135.03 Aligned_cols=112 Identities=25% Similarity=0.335 Sum_probs=94.0
Q ss_pred CCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHh
Q 012545 165 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 244 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (461)
+.+++++..+..+... .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.+++
T Consensus 5 d~~~v~~s~~~l~l~~--------~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~ 75 (119)
T d3lada2 5 DQDVIVDSTGALDFQN--------VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTK 75 (119)
T ss_dssp CSSSEEEHHHHTSCSS--------CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred CCCEEEchhHhhCccc--------CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHh
Confidence 4566776544333222 5899999999999999999999999999999999999987 899999999999999
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEeCCC---cEEecCEEEEccC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVG 287 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G---~~i~aD~vi~a~G 287 (461)
+||++++++++++++.++++ ..+++.++ ++++||.|++|+|
T Consensus 76 ~Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 76 QGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp TTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECSC
T ss_pred cCceeecCcEEEEEEEeCCE--EEEEEEECCCCEEEECCEEEEeeC
Confidence 99999999999999985555 34555443 5799999999998
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.73 E-value=2.9e-17 Score=132.40 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=98.4
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
.+.+++|...++. +.+...++++++|+|+|++|+|+|..|+++|.+|+++++.+++++. +++++++.+.+.++
T Consensus 2 ~~~~gv~~~~~~~------~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-~d~~~~~~~~~~l~ 74 (121)
T d1mo9a2 2 VNAKGVFDHATLV------EELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMK 74 (121)
T ss_dssp TTSBTEEEHHHHH------HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHH
T ss_pred CCCCCEEeHHHHH------HHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-cccchhhhhhhhhh
Confidence 3566788554433 3344446799999999999999999999999999999999999976 89999999999999
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEE---eCCCcEEecCEEEEccC
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGRTLEADIVVVGVG 287 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~~i~aD~vi~a~G 287 (461)
++||++++++++++++.++++....+. ..++++++||.||+|+|
T Consensus 75 ~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 75 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred ccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 999999999999999986677654443 34557899999999998
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=7.8e-18 Score=135.49 Aligned_cols=96 Identities=23% Similarity=0.392 Sum_probs=88.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+++.++++||++++++++++++.++++....
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~ 100 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVE 100 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEE
Confidence 5899999999999999999999999999999999999997 899999999999999999999999999999877777777
Q ss_pred EEeCCC-----cEEecCEEEEc
Q 012545 269 VKLKDG-----RTLEADIVVVG 285 (461)
Q Consensus 269 v~~~~G-----~~i~aD~vi~a 285 (461)
+++.++ +++++|.|++|
T Consensus 101 ~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 101 IVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEEETTTTEEEEEEESEEEEC
T ss_pred EEEEeCCCCCeEEEEeCEEEEC
Confidence 777654 37999999986
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.72 E-value=2e-17 Score=148.63 Aligned_cols=111 Identities=24% Similarity=0.356 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChh---------hh-hccccc-
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS---------LF-KGQVAE- 301 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~---------~~-~~~~~~- 301 (461)
...+...++..||+++.+..... +.........++ ..+.++.+++++|.+|... ++ +.++..
T Consensus 102 ~~~~~~~~~~~gV~vi~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~ 176 (229)
T d3lada1 102 TGGVASLIKANGVTLFEGHGKLL-----AGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLD 176 (229)
T ss_dssp HHHHHHHHHHHTCEEEESEEEEC-----STTCEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBC
T ss_pred hhhHHHHhhcCCeEEEEeEEccc-----ccceeeccccCccceeeecccccccCCcccccccccccccccchHhcCeeec
Confidence 34455677888999886533221 111123333332 4678999999999777543 11 345555
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++|+|.||+++|||.|+|||+|||...+ .+...|..+|+.||++|++..
T Consensus 177 ~~G~i~vd~~~~T~vpgiyA~GDv~~g~----------~l~~~A~~~G~~aa~~i~g~~ 225 (229)
T d3lada1 177 ERGFIYVDDYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHK 225 (229)
T ss_dssp TTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCC
T ss_pred CCCcEEecccccCCCCCEEEEeCCcchH----------HHHHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999999876 356678899999999999764
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.72 E-value=2.2e-17 Score=147.89 Aligned_cols=156 Identities=19% Similarity=0.279 Sum_probs=114.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------------------------------------cC---
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------FT--- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------------------------------------~~--- 231 (461)
-.|+|||+|+.|+++|..+++.|.+|+++++.+.+.... +.
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA 83 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence 368999999999999999999999999999876542210 00
Q ss_pred ---------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCE-EEEEeCCCcEEecCEEEEccC-----CCCChhhh-
Q 012545 232 ---------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV-KEVKLKDGRTLEADIVVVGVG-----GRPLISLF- 295 (461)
Q Consensus 232 ---------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~-~~v~~~~G~~i~aD~vi~a~G-----~~p~~~~~- 295 (461)
..+.+.+...++..+|+++.... .+.. +... ......+...+.+|.||+||| +.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~--~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~ 159 (221)
T d1dxla1 84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFVS--PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLN 159 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCE--EEEE--TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSC
T ss_pred HHHHHHHHHHHHhhHHHHhhhcCCeEEEEecc--cccc--ccccccccccccccccccceEEEeECCCccCccccCCCCC
Confidence 11233455667778888875432 2221 1111 111223446789999999998 67888755
Q ss_pred --hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 296 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 296 --~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+.+++. ++|+|.||+++|||+|+|||+|||+..+ .++..|..+|+.||++|++..
T Consensus 160 l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~----------~l~~~A~~~g~~aa~~i~g~~ 217 (221)
T d1dxla1 160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKV 217 (221)
T ss_dssp CTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSC
T ss_pred hHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC
Confidence 345666 6899999999999999999999999876 357788999999999998764
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.72 E-value=3.2e-17 Score=131.15 Aligned_cols=98 Identities=23% Similarity=0.444 Sum_probs=89.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC---CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 265 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~ 265 (461)
.|++++|||+|++|+|+|..|+++ |.+|+++++.+++++. +++++++.+++.++++||++++++.+++++.++++.
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~ 95 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT 95 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence 478999999999999999887664 8899999999999987 899999999999999999999999999998755554
Q ss_pred EEEEEeCCCcEEecCEEEEccCC
Q 012545 266 VKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 266 ~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
..+.+++|++++||.||+|+|+
T Consensus 96 -~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 96 -RHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp -EEEEETTSCEEEESEEEECSCE
T ss_pred -EEEEECCCCEEEcCEEEEecCC
Confidence 5799999999999999999996
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.71 E-value=1.1e-17 Score=134.86 Aligned_cols=97 Identities=31% Similarity=0.444 Sum_probs=86.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|++.||++++++++++++.++++....
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~ 102 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLT 102 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEE
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEE
Confidence 5899999999999999999999999999999999999986 899999999999999999999999999999866665556
Q ss_pred EEeCCC---cEEecCEEEEcc
Q 012545 269 VKLKDG---RTLEADIVVVGV 286 (461)
Q Consensus 269 v~~~~G---~~i~aD~vi~a~ 286 (461)
+...++ ++++||.|++|.
T Consensus 103 ~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 103 VEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EEESSSCCCEEEEESEEECCC
T ss_pred EEECCCCeEEEEEcCEEEEcC
Confidence 665443 458999999873
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.69 E-value=7.5e-17 Score=128.80 Aligned_cols=96 Identities=21% Similarity=0.428 Sum_probs=86.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC---CcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 265 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~ 265 (461)
.+++++|||+|++|+|+|..|.+++ .+||++++.+++++. +|+++++.+.+.|+++||++++++++++++...++.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~ 97 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGIQILTKENPAKVELNADGS 97 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC
T ss_pred cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCe
Confidence 5789999999999999998887764 579999999999986 899999999999999999999999999998755655
Q ss_pred EEEEEeCCCcEEecCEEEEcc
Q 012545 266 VKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 266 ~~~v~~~~G~~i~aD~vi~a~ 286 (461)
. .+++++|++++||.||+|+
T Consensus 98 ~-~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 98 K-SVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp E-EEEETTSCEEEESEEEECS
T ss_pred E-EEEECCCcEEEeCEEEEeC
Confidence 4 6999999999999999985
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=2.7e-16 Score=137.22 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=122.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc---------------CCcccCHHHHHHHHHHHHhcCcEEEcCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---------------MPRLFTADIAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~---------------~~~~~~~~~~~~~~~~l~~~GV~v~~~~ 253 (461)
+.++|+|||||++|+++|..+++.|.+|+++++.+.. .....+.++.+.+.+.+.+.++++..+
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 82 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence 3578999999999999999999999999999876431 111235677788888899999999865
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC-----ChhhhhcccccCCCcEEeCC-----CCCCCCCCEEEeC
Q 012545 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP-----LISLFKGQVAENKGGIETDD-----FFKTSADDVYAVG 323 (461)
Q Consensus 254 ~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p-----~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~vya~G 323 (461)
.|+++... +....++..+ ..+.++.+++++|..| +..++...++.++|+|.+|. .++|++|+|||+|
T Consensus 83 ~V~~~~~~--~~~~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaG 159 (190)
T d1trba1 83 HINKVDLQ--NRPFRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAG 159 (190)
T ss_dssp CEEEEECS--SSSEEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECG
T ss_pred eeEEEecC--CCcEEEEEee-eeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeE
Confidence 68888763 3334555554 4899999999999654 45566666667789999994 5689999999999
Q ss_pred cccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 324 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 324 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
||++.+. .++..|..+|..||.++...
T Consensus 160 Dv~~~~~---------~q~i~Aag~G~~AA~~a~~y 186 (190)
T d1trba1 160 DVMDHIY---------RQAITSAGTGCMAALDAERY 186 (190)
T ss_dssp GGGCSSS---------CCHHHHHHHHHHHHHHHHHH
T ss_pred EecCcce---------eEEEEEeccHHHHHHHHHHH
Confidence 9997653 46778888999999887644
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.68 E-value=2.2e-16 Score=138.08 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=124.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--------------------CcccCHHHHHHHHHHHHhcCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------------PRLFTADIAAFYEGYYANKGIKI 249 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~GV~v 249 (461)
.++|+|||+|++|+++|..+++.|.+|.++++..... .....+++...+.+.+++.|+++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i 84 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 84 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence 5789999999999999999999999999998654311 11134678888888889999999
Q ss_pred EcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC-----CCChhhhhccccc-CCCcEEeC-CCCCCCCCCEEEe
Q 012545 250 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG-----RPLISLFKGQVAE-NKGGIETD-DFFKTSADDVYAV 322 (461)
Q Consensus 250 ~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~-----~p~~~~~~~~~~~-~~g~i~vd-~~~~t~~~~vya~ 322 (461)
..+ .|.+++.. +....+.+ +...+.+|.+++++|. .|++.+++.+++. ++|+|.+| .+++|+.|+|||+
T Consensus 85 ~~~-~V~~~~~~--~~~~~v~~-~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~ 160 (192)
T d1vdca1 85 FTE-TVTKVDFS--SKPFKLFT-DSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAA 160 (192)
T ss_dssp ECC-CCCEEECS--SSSEEEEC-SSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEEC
T ss_pred eee-eEEecccc--cCcEEecc-cceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEe
Confidence 866 67788763 33344544 4458899999999984 5888888888887 68999999 4899999999999
Q ss_pred CcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 323 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 323 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
|||.+.+. .+...|..+|+.||.++...
T Consensus 161 GDv~~~~~---------r~~v~A~g~G~~aA~~~~~y 188 (192)
T d1vdca1 161 GDVQDKKY---------RQAITAAGTGCMAALDAEHY 188 (192)
T ss_dssp GGGGCSSC---------CCHHHHHHHHHHHHHHHHHH
T ss_pred eecCCccc---------ceEEEEEechHHHHHHHHHH
Confidence 99998764 35677888999999887543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.67 E-value=7.8e-17 Score=128.86 Aligned_cols=94 Identities=30% Similarity=0.494 Sum_probs=83.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.|+++||++++++++++++..+++. .
T Consensus 21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~--~ 97 (117)
T d1ebda2 21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGV--T 97 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEE--E
T ss_pred cCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEE--E
Confidence 5799999999999999999999999999999999999987 899999999999999999999999999999755543 3
Q ss_pred EEe-CCC--cEEecCEEEEc
Q 012545 269 VKL-KDG--RTLEADIVVVG 285 (461)
Q Consensus 269 v~~-~~G--~~i~aD~vi~a 285 (461)
+.+ .+| +++++|.|+++
T Consensus 98 v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 98 VTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EEEEETTEEEEEEESEEEEC
T ss_pred EEEEeCCCEEEEEeEEEEEC
Confidence 443 344 57999999974
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.66 E-value=2.1e-17 Score=150.07 Aligned_cols=76 Identities=29% Similarity=0.437 Sum_probs=63.5
Q ss_pred cEEecCEEEEccCCCCChh-----------hhhccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccH
Q 012545 275 RTLEADIVVVGVGGRPLIS-----------LFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV 342 (461)
Q Consensus 275 ~~i~aD~vi~a~G~~p~~~-----------~~~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~ 342 (461)
+.+.+|.+++++|.+|... +-+.++.. ++|+|.||+++|||.|+|||+|||++.+ ...
T Consensus 148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~----------~~~ 217 (240)
T d1feca1 148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLT 217 (240)
T ss_dssp EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCH
T ss_pred EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCc----------cch
Confidence 4689999999999888654 22445666 6789999999999999999999999876 356
Q ss_pred HHHHHHHHHHHHHHhccc
Q 012545 343 DHARKSAEQAVKTIMATE 360 (461)
Q Consensus 343 ~~A~~~g~~aa~~i~~~~ 360 (461)
..|..+|+.||+++++..
T Consensus 218 ~~A~~eg~~aa~~~~~~~ 235 (240)
T d1feca1 218 PVAINEGAAFVDTVFANK 235 (240)
T ss_dssp HHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHhCCC
Confidence 779999999999999854
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.66 E-value=1.8e-16 Score=126.22 Aligned_cols=96 Identities=31% Similarity=0.415 Sum_probs=82.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.|++++|+|+|++|+|+|..|+++|++||++++.+++++. +++++++.+.+.|+++||+++++++|++++. +..+..
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~~~~~~ 96 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYEN--GCLLAN 96 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEET--TEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEcC--CeEEEE
Confidence 5799999999999999999999999999999999999997 7999999999999999999999999999963 222211
Q ss_pred EEeCCCcEEecCEEEEccC
Q 012545 269 VKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G 287 (461)
....++++++||.|++|+|
T Consensus 97 ~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 97 DGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp CSSSCCCEECCSCEEECCC
T ss_pred EcCCCeEEEEcCEEEEecC
Confidence 1122335799999999998
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.65 E-value=3.6e-16 Score=135.25 Aligned_cols=161 Identities=20% Similarity=0.268 Sum_probs=116.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCcccCHHHHH---------HHHHHHHhcCcEEEcCCcEEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTADIAA---------FYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~~~~~~~~~---------~~~~~l~~~GV~v~~~~~v~~i 258 (461)
+|+|+|||+|++|+|+|..|++.+ .+||++++.+.+........... .....+...++.+..+ .+..+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHD-SATGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECC-CEEEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeee-eeEee
Confidence 689999999999999999999987 47999999887655432222211 1124455677887765 33443
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc---------ccccCCCcEEeCCC-CC-CCCCCEEEeCcccc
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG---------QVAENKGGIETDDF-FK-TSADDVYAVGDVAT 327 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~---------~~~~~~g~i~vd~~-~~-t~~~~vya~GD~~~ 327 (461)
.. .. ..+.+.+++++++|.+|+|+|.+|+...+.. +...+.+++.++.. ++ ++.++||++||++.
T Consensus 81 ~~--~~--~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~ 156 (186)
T d1fcda1 81 DP--DK--KLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI 156 (186)
T ss_dssp CT--TT--TEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred ee--cc--ceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccc
Confidence 32 33 2567889999999999999999998875532 23335667777643 44 58999999999996
Q ss_pred cCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 328 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 328 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
.... .+.+..|..||+.+|+||+....|
T Consensus 157 ~~~~-------p~~~~~A~~q~~~~A~ni~~~~~G 184 (186)
T d1fcda1 157 ANPM-------PKSGYSANSQGKVAAAAVVVLLKG 184 (186)
T ss_dssp CTTC-------CSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCC-------CchHhHHHHHHHHHHHHHHHHhcC
Confidence 5431 156889999999999999876544
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=1.5e-15 Score=137.15 Aligned_cols=155 Identities=16% Similarity=0.124 Sum_probs=111.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-------------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------- 228 (461)
.++|||+|+.|+.+|..+++.|.+|.++++.+.....
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~ 84 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT 84 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence 5899999999999999999999999999965421100
Q ss_pred -ccC------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc--EEecCEEEEccCCCCChh
Q 012545 229 -LFT------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 229 -~~~------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~--~i~aD~vi~a~G~~p~~~ 293 (461)
..+ ..+.+.+...+++.+|+++.+.. .+.. . ....+...++. .+.++.+++++|.+|...
T Consensus 85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~--~~~~--~-~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~ 159 (235)
T d1h6va1 85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYG--KFIG--P-HKIMATNNKGKEKVYSAERFLIATGERPRYL 159 (235)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEE--EEEE--T-TEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEE--eecc--c-cceecccccccccccccccceeecCCCceeE
Confidence 000 01223345667788999886643 2322 2 22355555554 588999999999888643
Q ss_pred h-----------hhccccc--CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 294 L-----------FKGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 294 ~-----------~~~~~~~--~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
. ...++.. ..|+|.||++||||+|+|||+|||+..+. .+...|..+|+.||++|++..
T Consensus 160 ~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~---------~l~~~A~~eG~~aa~~~~g~~ 230 (235)
T d1h6va1 160 GIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKL---------ELTPVAIQAGRLLAQRLYGGS 230 (235)
T ss_dssp SSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCC
T ss_pred EEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCc---------ccHHHHHHHHHHHHHHHcCCC
Confidence 2 1234444 35899999999999999999999997643 356779999999999999754
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.64 E-value=2e-16 Score=143.06 Aligned_cols=76 Identities=25% Similarity=0.431 Sum_probs=59.3
Q ss_pred EEecCEEEEccCC--------CCChhhh---hcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHH
Q 012545 276 TLEADIVVVGVGG--------RPLISLF---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 344 (461)
Q Consensus 276 ~i~aD~vi~a~G~--------~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~ 344 (461)
.++++.++++++. .|++..+ +.++..++|+|.||++|||+.|+|||+|||.+.+ .+...
T Consensus 149 ~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~----------~l~~~ 218 (238)
T d1aoga1 149 RLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRV----------MLTPV 218 (238)
T ss_dssp EEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSC----------CCHHH
T ss_pred cccccceeeecccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCc----------cchhh
Confidence 4566667775554 4444433 3456668899999999999999999999999876 35677
Q ss_pred HHHHHHHHHHHHhcccC
Q 012545 345 ARKSAEQAVKTIMATEG 361 (461)
Q Consensus 345 A~~~g~~aa~~i~~~~~ 361 (461)
|..+|+.||++|++..+
T Consensus 219 A~~eg~~aa~~i~g~~~ 235 (238)
T d1aoga1 219 AINEAAALVDTVFGTTP 235 (238)
T ss_dssp HHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999999999998653
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.5e-15 Score=122.65 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=85.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++++|||+|++|+|+|..|+++|.+||++++++++++. +|+++++.+.+.|+++||++++++++++++.++++....
T Consensus 21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~ 99 (125)
T d3grsa2 21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVS 99 (125)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEE
T ss_pred cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEE
Confidence 4789999999999999999999999999999999999987 899999999999999999999999999998865653333
Q ss_pred EE-eCCCc------EEecCEEEEccC
Q 012545 269 VK-LKDGR------TLEADIVVVGVG 287 (461)
Q Consensus 269 v~-~~~G~------~i~aD~vi~a~G 287 (461)
+. ..+|+ .+++|.|++|+|
T Consensus 100 ~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 100 MVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEEccCCcCcCccccccCCEEEEEeC
Confidence 22 33442 578999999998
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.63 E-value=2.9e-15 Score=133.77 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=109.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc---------------------------c-------CC--c-ccC-
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---------------------------C-------MP--R-LFT- 231 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~---------------------------~-------~~--~-~~~- 231 (461)
...++|||+|+.|+++|..++++|.+|+++++.+. . .. . ..+
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI 84 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence 35799999999999999999999999999986531 0 00 0 000
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh------
Q 012545 232 -----------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL------ 294 (461)
Q Consensus 232 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~------ 294 (461)
..........+++.+++++.+.. .+.. .. ....++.++.+|.+++|+|.+|....
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~--~~~~--~~----~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~ 156 (220)
T d1lvla1 85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWA--KVLD--GK----QVEVDGQRIQCEHLLLATGSSSVELPRRPRTK 156 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCE--EEEE--TT----EEEETTEEEECSEEEECCCEEECCBTEEECCS
T ss_pred HHHhhhheeEEeeeccchhhhhccCceEEEEeee--cccC--cc----cccccceeEeeceeeEcCCCCccccccccccc
Confidence 01112334556677888776543 2221 11 11235568999999999998886531
Q ss_pred ----hhcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 295 ----FKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 295 ----~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
....+..++|+|.||+++||+.|+|||+|||++.+ .++..|..+|+.||++|++..
T Consensus 157 ~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~----------~l~~~a~~~g~~~a~~i~G~~ 216 (220)
T d1lvla1 157 GFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKA 216 (220)
T ss_dssp SSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred CCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCcc----------cchhhhhhhHHHHHHHHcCCC
Confidence 12233447899999999999999999999999876 357788999999999999864
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.60 E-value=3.1e-15 Score=134.50 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=102.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----------------------------------ccC-----
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------------------------LFT----- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----------------------------------~~~----- 231 (461)
.++|||+|+.|+.+|..+++.|.+|+++++.+.+... .+.
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~ 87 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR 87 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence 5899999999999999999999999999987653110 000
Q ss_pred -------HHHHHHHHHHHHhcCcEEEcCCcEEEE--------EecCCCCEEEEEeCCCcEEecCEEEEccC-CCCChhhh
Q 012545 232 -------ADIAAFYEGYYANKGIKIIKGTVAVGF--------TTNADGEVKEVKLKDGRTLEADIVVVGVG-GRPLISLF 295 (461)
Q Consensus 232 -------~~~~~~~~~~l~~~GV~v~~~~~v~~i--------~~~~~g~~~~v~~~~G~~i~aD~vi~a~G-~~p~~~~~ 295 (461)
..+...+.......+++++.+.....- ........ .......+...++.++++.| +.|+....
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (229)
T d1ojta1 88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQ-AAPTGEKKIVAFKNCIIAAGSRAPNGKLI 166 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTE-EEEEEEEEEEEEEEEEECCCEEEECGGGT
T ss_pred HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccccccccc-ccccccccceecceEEEEecccCCccccc
Confidence 111223344556667776644321100 00000000 01111113455556666655 55655432
Q ss_pred ---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 296 ---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 296 ---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
..+++. ++|+|.||+++|||+|+|||+|||++.+ .++..|..+|+.||.+|++..
T Consensus 167 ~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~----------~l~~~A~~eG~~Aa~~i~G~~ 225 (229)
T d1ojta1 167 SAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHK 225 (229)
T ss_dssp TGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred chhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCc----------chHHHHHHHHHHHHHHHcCCC
Confidence 345666 6899999999999999999999999876 356778999999999999764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=1.7e-14 Score=115.49 Aligned_cols=97 Identities=27% Similarity=0.337 Sum_probs=81.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCC--CE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EV 266 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g--~~ 266 (461)
.|++++|||+|++|+|+|..|+++|.+||++.+. ++++. +|+++++.+.+.|+++||++++++.|++++..+++ ..
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~ 96 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGR 96 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCE
T ss_pred CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccE
Confidence 5789999999999999999999999999999875 67776 89999999999999999999999999999763332 23
Q ss_pred EEEEeCCC-----cEEecCEEEEccC
Q 012545 267 KEVKLKDG-----RTLEADIVVVGVG 287 (461)
Q Consensus 267 ~~v~~~~G-----~~i~aD~vi~a~G 287 (461)
..+++.++ ..+++|.|++|+|
T Consensus 97 ~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 97 LKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEEEEEECCCCcEEEEECCEEEEEeC
Confidence 34444332 2467999999998
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.2e-15 Score=133.73 Aligned_cols=127 Identities=23% Similarity=0.351 Sum_probs=94.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCcee--ecCC---------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV--CVGS--------- 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------- 72 (461)
..+++||||||++|+.+|.+|++++. ..+|+++++++..+|.||++++.++..........+.. ....
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~-~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP 81 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCC-CCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCCh
Confidence 35789999999999999999999885 57899999999999999999888765543221100000 0000
Q ss_pred --CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccc
Q 012545 73 --GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSL 131 (461)
Q Consensus 73 --~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~ 131 (461)
.........+++.+|+++++++|+.++.+.++|.+.+|+++.||+||+|+|+.+.-+++
T Consensus 82 ~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l 142 (213)
T d1m6ia1 82 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVEL 142 (213)
T ss_dssp GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTT
T ss_pred hhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhh
Confidence 00112223446789999999999999999999999999999999999999988743333
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.52 E-value=3.8e-18 Score=154.29 Aligned_cols=170 Identities=13% Similarity=0.106 Sum_probs=97.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++|+||||||||++||..|+++|++ |+|+|+++..... +...........+... .......+.
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~---v~l~E~~~~~GG~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~ 112 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKIGGH-------LNQVAALPGLGEWSYH-----RDYRETQIT 112 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTT-------HHHHTTSTTCGGGGHH-----HHHHHHHHH
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccc---eeeEeeccccCCc-------cccccccceeeccccc-----chhHHHHHH
Confidence 468999999999999999999999987 9999998754311 1110001111111000 000111111
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+...... . ..++...+.+...+..++.||++|+|||+.+..|.+++... ... ...
T Consensus 113 ~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~-----------------~~~----~~~ 167 (233)
T d1djqa3 113 KLLKKNK---E-SQLALGQKPMTADDVLQYGADKVIIATGASECTLWNELKAR-----------------ESE----WAE 167 (233)
T ss_dssp HHHTTCT---T-CEEECSCCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHT-----------------THH----HHH
T ss_pred HHhhcce---e-eeeecccccccchhhhhhccceeeeccCCCccccccccccc-----------------ccc----cch
Confidence 1111100 0 11122233333333345789999999999885443333210 000 000
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 227 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~ 227 (461)
.....+.... ...++++|+|+|++|+|+|..|++.|.+|+++++.+.++.
T Consensus 168 ~~~~~~~~~~--------------~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~ 217 (233)
T d1djqa3 168 NDIKGIYLIG--------------DAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW 217 (233)
T ss_dssp TTCCEEEECG--------------GGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred hhhhhhhhcc--------------ccCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence 0111122111 1367899999999999999999999999999999887643
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.52 E-value=2.4e-13 Score=123.81 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=83.9
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCC-CEEEEEeCCCcEEecCEEEEccCCCCChh---------hhh-cc
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVVGVGGRPLIS---------LFK-GQ 298 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~~G~~i~aD~vi~a~G~~p~~~---------~~~-~~ 298 (461)
-..++.+.+.+.+++.||+++++++|+++...+++ .+..+...++.++.||.||+|+|-.+... +++ .+
T Consensus 107 ~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~ 186 (253)
T d2gqfa1 107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFG 186 (253)
T ss_dssp CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcc
Confidence 35678888999999999999999999999875444 23334556778999999999999654322 111 11
Q ss_pred ccc------CCCcEE---eC-CCCCC-CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 299 VAE------NKGGIE---TD-DFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 299 ~~~------~~g~i~---vd-~~~~t-~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
... ..|++. +| ..|+. .+|++|.+|.+........| -..+.|...|..|++.|..
T Consensus 187 ~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg-----~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 187 IPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGG-----YNFQWAWSSAYACALSISR 252 (253)
T ss_dssp CCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTT-----HHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCC-----EehhhhHhHHHHHHHHHhc
Confidence 111 223443 34 45776 68999999977765432222 1345677888888888763
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=4e-13 Score=115.93 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=121.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc--c-----------CCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--C-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~--~-----------~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
.|+|||+|++|+++|..+++.|.+|+++++... + .+....+.+.+.+...+++.+++......+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 489999999999999999999999999986421 1 111123667777788888899999988888887
Q ss_pred EecCC-CCEEEEEeCCCcEEecCEEEEccCCCCChh-hhhccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCc
Q 012545 259 TTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPLIS-LFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 335 (461)
Q Consensus 259 ~~~~~-g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~-~~~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~ 335 (461)
..... .........++.++.++.++.++|..++.. .....+.. ..|.|.||+.++|+.|+||++|||...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~----- 157 (184)
T d1fl2a1 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY----- 157 (184)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS-----
T ss_pred cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc-----
Confidence 75332 233455566777999999999999665443 44444444 67899999999999999999999998764
Q ss_pred ceeeccHHHHHHHHHHHHHHHhcc
Q 012545 336 MRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 336 ~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
+....|..+|..||.++...
T Consensus 158 ----~~~vva~g~G~~aA~~~~~~ 177 (184)
T d1fl2a1 158 ----KQIIIATGEGAKASLSAFDY 177 (184)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHH
T ss_pred ----CCcEEEEECcHHHHHHHHHH
Confidence 35667778888888877654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=5.6e-16 Score=132.35 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=65.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|+|||||||||+||..|+++|++ |+|+|+.+.... .+...........+. +....+.+.++
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~---Vtl~E~~~~~GG-------~l~~~~~~p~~~~~~-----~~~~~~~~~~~ 106 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGG-------QFNIAKQIPGKEEFY-----ETLRYYRRMIE 106 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCT-------THHHHTTSTTCTTHH-----HHHHHHHHHHH
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccc---eEEEeccCccCc-------eEEEEEeCcccchHH-----HHHHHHHHhhh
Confidence 468999999999999999999999997 999999975431 111111111111111 01123456667
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCc
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
+.++++++++.|+. +. ...||.+|+|||+.|
T Consensus 107 ~~gV~i~l~~~Vt~-----------~~-~~~~d~vilAtG~~~ 137 (179)
T d1ps9a3 107 VTGVTLKLNHTVTA-----------DQ-LQAFDETILASGIPN 137 (179)
T ss_dssp HHTCEEEESCCCCS-----------SS-SCCSSEEEECCCEEC
T ss_pred cCCeEEEeCCEEcc-----------cc-cccceeEEEeecCCC
Confidence 78999999976632 11 258999999999988
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=3e-13 Score=121.32 Aligned_cols=154 Identities=22% Similarity=0.275 Sum_probs=102.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----cC-------HHH-------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FT-------ADI------------------------- 234 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-----~~-------~~~------------------------- 234 (461)
.|+|||+|+.|+.+|..+++.|.+|+++++.+.+.... ++ .+.
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~ 86 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN 86 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchhh
Confidence 58999999999999999999999999999876542110 00 011
Q ss_pred ------------HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--------cEEecCEEEE--------cc
Q 012545 235 ------------AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--------RTLEADIVVV--------GV 286 (461)
Q Consensus 235 ------------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--------~~i~aD~vi~--------a~ 286 (461)
........++.+|+++.+.- ++. +.....+....+ ..++++.+++ ++
T Consensus 87 ~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 161 (233)
T d1v59a1 87 FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred hhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe---cCCCcEEEecccccceeeeeeeccCCeEEEecccccceec
Confidence 11123333444555543311 111 111122332222 2344444444 89
Q ss_pred CCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 287 GGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 287 G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
|++|+++.+ +.+++. ++|+|.||+++||+.|+|||+|||+..+ .....|..+|+.||++|++..
T Consensus 162 G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~----------~l~~~a~~~G~~aa~~i~~~~ 229 (233)
T d1v59a1 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGH 229 (233)
T ss_dssp CEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccH----------HHHHHHHHHHHHHHHHHccCC
Confidence 999998754 335665 6789999999999999999999999876 346678999999999998754
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.47 E-value=7.9e-13 Score=119.94 Aligned_cols=121 Identities=20% Similarity=0.249 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh---------hhh-cccc
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---------LFK-GQVA 300 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~---------~~~-~~~~ 300 (461)
..++.+.+.+.+++.||+++++++|+++.. +++.+..|.+++|+++.||.||+|+|...... +++ .+..
T Consensus 109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~ 187 (251)
T d2i0za1 109 AQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHT 187 (251)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceee
Confidence 456778888999999999999999999987 46677789999999999999999999653221 222 1111
Q ss_pred cC---CCcE-----EeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 301 EN---KGGI-----ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 301 ~~---~g~i-----~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
.. .+.+ ...+...+..|++|++|++........| .....|...|+.|+..+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG-----~~~~~a~~~G~~a~~~~~ 247 (251)
T d2i0za1 188 ITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG-----YNITSALVTGRIAGTTAG 247 (251)
T ss_dssp EEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT-----HHHHHHHHHHHHHHHHHH
T ss_pred eeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch-----HHHHHHHHHHHHHHHHHH
Confidence 10 1111 1122223478999999999865433222 245677788998888765
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3e-16 Score=139.96 Aligned_cols=179 Identities=17% Similarity=0.157 Sum_probs=103.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCC-------CCCCCCceeecCC-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG-------TARLPGFHVCVGS- 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~- 72 (461)
++|||+||||||||++||..+++.|.+ |+|||++.... +..|..++.+..... .....++......
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~k---V~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 77 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF 77 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence 479999999999999999999999987 99999975321 111222222211100 0000000000000
Q ss_pred --------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccC
Q 012545 73 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKH 138 (461)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~ 138 (461)
........++++.+|++......... ...+ ..+++.+.++++++|||+.|.+|.+|+.+...
T Consensus 78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~---~~~~-~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~ 153 (217)
T d1gesa1 78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---AKTL-EVNGETITADHILIATGGRPSHPREPANDNIN 153 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE---TTEE-EETTEEEEEEEEEECCCEEECCCEEESCTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce---eeee-cCCCceeeeeeeeeecCccccCCCCCCcCCcc
Confidence 00011233456779998877543321 2222 23566799999999999999999998764310
Q ss_pred ccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 012545 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS 217 (461)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vt 217 (461)
+...+. .- +..+....... .+..++++.++|+|.+|+|+|..+.+.|.+|+
T Consensus 154 -l~~~gv----------------~~-~~~~~i~~d~~----------~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~ 204 (217)
T d1gesa1 154 -LEAAGV----------------KT-NEKGYIVVDKY----------QNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS 204 (217)
T ss_dssp -HHHHTC----------------CB-CTTSCBCCCTT----------SBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred -cccccE----------------EE-cCCccEeeCch----------hccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence 000000 00 00011111110 01146789999999999999999999998874
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.45 E-value=2.3e-14 Score=120.52 Aligned_cols=123 Identities=12% Similarity=0.005 Sum_probs=89.3
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE--CCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV--GGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 238 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~Vv--G~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~ 238 (461)
+||.+..+++.+ +.+++... +..++++++|+ |+|++|+|+|..|+++|.+||++++.+.+++. +++.....+
T Consensus 15 ipG~~~~~~~v~-t~~d~l~~----~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-~~~~~~~~~ 88 (156)
T d1djqa2 15 IPGADASLPDQL-TPEQVMDG----KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-HFTLEYPNM 88 (156)
T ss_dssp CTTCCTTSTTEE-CHHHHHHT----CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-HHTTCHHHH
T ss_pred CCCccCCCCEEE-CHHHHhcC----ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-cchhHHHHH
Confidence 566655433333 45555443 22245555655 99999999999999999999999999988876 688888899
Q ss_pred HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 239 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
.+.|++.||++++++++.++.. ++ +.+.+.....++.+..++|..|+....
T Consensus 89 ~~~l~~~GV~i~~~~~v~~i~~--~~----v~l~~~~~~~~~~v~~~~g~~~~~~~~ 139 (156)
T d1djqa2 89 MRRLHELHVEELGDHFCSRIEP--GR----MEIYNIWGDGSKRTYRGPGVSPRDANT 139 (156)
T ss_dssp HHHHHHTTCEEEETEEEEEEET--TE----EEEEETTCSCSCCCCCCTTSCSSCCCC
T ss_pred HHHHhhccceEEeccEEEEecC--cc----eEEEeeeccccceeeeeeEEEecccCC
Confidence 9999999999999999999975 22 333333334556666677777766544
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.39 E-value=3.7e-12 Score=120.07 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC--C--cEEecCEEEEccCC-CCChhhh----------
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGG-RPLISLF---------- 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--G--~~i~aD~vi~a~G~-~p~~~~~---------- 295 (461)
...+.+.+.+.+.++|++++++++++++..+++|++.+|...+ + ..+.|+.||+|+|- .-|.+++
T Consensus 151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~ 230 (322)
T d1d4ca2 151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGF 230 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccc
Confidence 5677788888889999999999999999886778877776542 3 25899999999993 2222221
Q ss_pred -----------------hccc---ccCCCcEEeC-------CCCCCCCCCEEEeCcccccCc--cccCcceeeccHHHHH
Q 012545 296 -----------------KGQV---AENKGGIETD-------DFFKTSADDVYAVGDVATFPM--KLYREMRRVEHVDHAR 346 (461)
Q Consensus 296 -----------------~~~~---~~~~g~i~vd-------~~~~t~~~~vya~GD~~~~~~--~~~~~~~~~~~~~~A~ 346 (461)
..+. .++.+++.+| +..+|.+|++||+|+|+..-+ ...+. ..+..+.
T Consensus 231 ~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~~~~~~~~~v~Glya~Ge~~~gvhG~nrlg~----~~~~e~~ 306 (322)
T d1d4ca2 231 KATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGG----NAISDIV 306 (322)
T ss_dssp CBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEEEBTTTSSEEEEEEECGGGBCSSSTTSCCTT----HHHHHHH
T ss_pred cccCCCCccCHHHHHHHHcCCcceecccceEEecCceEEEECCCCCEeCceEEchhhcCCccccccchh----hHHHHHH
Confidence 1111 1133333333 445677899999999986432 11111 2344555
Q ss_pred HHHHHHHHHHh
Q 012545 347 KSAEQAVKTIM 357 (461)
Q Consensus 347 ~~g~~aa~~i~ 357 (461)
--|+.|++++.
T Consensus 307 v~g~~ag~~aa 317 (322)
T d1d4ca2 307 TYGRIAGASAA 317 (322)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55677666655
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.38 E-value=6.5e-17 Score=148.49 Aligned_cols=35 Identities=29% Similarity=0.573 Sum_probs=32.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||++||||||||++||.++++.|.+ |+|+|++..
T Consensus 1 vyDviVIG~G~aG~~aA~~aa~~G~~---V~liE~~~~ 35 (259)
T d1onfa1 1 VYDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRL 35 (259)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSST
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence 38999999999999999999999988 999999864
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=6.6e-12 Score=111.16 Aligned_cols=150 Identities=21% Similarity=0.308 Sum_probs=109.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc------------------------------------ccC----
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------LFT---- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------~~~---- 231 (461)
.++|||+|+.|+++|..++++|.+|+++++.+ +... .++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL 82 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence 48999999999999999999999999999753 1100 000
Q ss_pred --------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh--------
Q 012545 232 --------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF-------- 295 (461)
Q Consensus 232 --------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~-------- 295 (461)
..+...++..+++.||++.......... . ....++..+.++.+++|+|.+|..+..
T Consensus 83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~----~----~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l 154 (217)
T d1gesa1 83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA----K----TLEVNGETITADHILIATGGRPSHPREPANDNINL 154 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET----T----EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee----e----eecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence 0122334556778899887665433221 1 123466789999999999977654322
Q ss_pred -hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 296 -KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 296 -~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
..++.. +++++.+|++++|+.|+||++||+.... .....+..+|+.++.++++..
T Consensus 155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTC
T ss_pred ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCC
Confidence 234545 6889999999999999999999999876 456678899999999998765
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=5.9e-12 Score=119.93 Aligned_cols=116 Identities=13% Similarity=0.181 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC--------CChhhh-hccccc--CC
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR--------PLISLF-KGQVAE--NK 303 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~--------p~~~~~-~~~~~~--~~ 303 (461)
.....+.+++.|++++++++|++|..+++ . ..|++.||++++||.||+|++.. |..... ...+.. ..
T Consensus 210 ~~~~~~l~~~~g~~i~~~~~v~~I~~~~~-~-v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~ 287 (383)
T d2v5za1 210 GQVSERIMDLLGDRVKLERPVIYIDQTRE-N-VLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPP 287 (383)
T ss_dssp HHHHHHHHHHHGGGEEESCCEEEEECSSS-S-EEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCT
T ss_pred hHHHHHHHHHcCCeEEecCcceEEEecCC-e-EEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccC
Confidence 33445556778999999999999987433 3 46899999999999999998732 111100 011111 11
Q ss_pred Cc-EEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 304 GG-IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 304 g~-i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+. -.....+.....+|+.+|+....... ..+..|..+|+.+|..++...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~~~~ 337 (383)
T d2v5za1 288 GILTQYGRVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREILHAM 337 (383)
T ss_dssp THHHHHGGGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHHHHT
T ss_pred CccchhhhhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHHHHh
Confidence 11 11222334456789999987654332 456678889999999887554
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.27 E-value=4.7e-11 Score=112.09 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CCc--EEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G~--~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.+++.|++++++++++++..++++++.++... +++ .+.++.||+|+|-
T Consensus 147 g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG 208 (317)
T d1qo8a2 147 GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGG 208 (317)
T ss_dssp HHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred chhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccc
Confidence 456778888999999999999999999877678888877654 343 5789999999994
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.25 E-value=9.3e-11 Score=109.43 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC--C--cEEecCEEEEccC-CCCChhhhh---------
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVG-GRPLISLFK--------- 296 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--G--~~i~aD~vi~a~G-~~p~~~~~~--------- 296 (461)
...+...+.+.+++.|++++.+++++++..+++|++.+|...+ + .++.|+.||+|+| +..|.+++.
T Consensus 144 ~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~ 223 (308)
T d1y0pa2 144 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGF 223 (308)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred HHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcccccHHHHHHhccchhhh
Confidence 3456777788888999999999999999886778888887653 3 2588999999999 444443321
Q ss_pred ----------ccccc--CCCcEEeC-CCCCC----------CCCCEEEeCcccccCcc--ccCcceeeccHHHHHHHHHH
Q 012545 297 ----------GQVAE--NKGGIETD-DFFKT----------SADDVYAVGDVATFPMK--LYREMRRVEHVDHARKSAEQ 351 (461)
Q Consensus 297 ----------~~~~~--~~g~i~vd-~~~~t----------~~~~vya~GD~~~~~~~--~~~~~~~~~~~~~A~~~g~~ 351 (461)
.++.+ .-|.-..| +++|. ..|++||+|.|++..+. ..|. ..+....--|+.
T Consensus 224 ~~~~~~~~tGdg~~ma~~aGa~l~~me~vq~~p~~~~~~~~~~~gl~a~G~~~~g~hg~nrlg~----~~~~~~~~~g~~ 299 (308)
T d1y0pa2 224 ISTNQPGAVGDGLDVAENAGGALKDMQYIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGG----NAISDIITFGRL 299 (308)
T ss_dssp CBCSCTTCSSHHHHHHHHTTCCEECTTCBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTT----HHHHHHHHHHHH
T ss_pred cccCCCcccCHHHHHHHHcCCCccCccceecccceecCCCCcccceeehhhhhccccCcCCCch----hhHHHHHHHHHH
Confidence 01111 22444555 45442 36899999999865321 1111 234455555777
Q ss_pred HHHHHh
Q 012545 352 AVKTIM 357 (461)
Q Consensus 352 aa~~i~ 357 (461)
|++++.
T Consensus 300 ag~~a~ 305 (308)
T d1y0pa2 300 AGEEAA 305 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.24 E-value=1.1e-11 Score=106.27 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=82.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
-++|||||||++|+.+|..|++++. +.+|+|+|+++.+. .+.+......... ... ........+..
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~~~~~--~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~ 67 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNTDYY--TCYLSNEVIGGDR--KLE---------SIKHGYDGLRA 67 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSCEE--CSTTHHHHHHTSS--CGG---------GGEECSHHHHT
T ss_pred CCcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECCCccc--cccccccccchhh--hhh---------hhhhhhhhccc
Confidence 3699999999999999999999874 56799999987422 1221111111110 000 01223445567
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccccc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.++.+..+ .+..++...+.+.+.++++++||++|+|||..++.+.+++..
T Consensus 68 ~~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~ 117 (186)
T d1fcda1 68 HGIQVVHD-SATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRA 117 (186)
T ss_dssp TTEEEECC-CEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEE
T ss_pred cceeEeee-eeEeeeeccceeecccceeeccceEEEEeccccchhhhhhhh
Confidence 78888876 777778888889999999999999999999999877776654
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.21 E-value=2e-11 Score=104.99 Aligned_cols=108 Identities=25% Similarity=0.429 Sum_probs=83.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
+.+|+|||||++|+.+|..|++.|. +..|++++++...+|.++.++..+....... .....+...
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~ 67 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAE--------------KIRLDCKRA 67 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTTHHHHCCGG--------------GSBCCGGGS
T ss_pred CCCEEEECccHHHHHHHHHHHhcCC-ceEEEEEecccccchhhHHHhhhhhhhhhhh--------------hHHHHHhhc
Confidence 4569999999999999999999986 4557778777766777665554333211111 111223446
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.+++++.+..+..++.+...+.+.+++++.||.+++|+|..|.
T Consensus 68 ~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~ 110 (183)
T d1d7ya1 68 PEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR 110 (183)
T ss_dssp TTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcc
Confidence 7899999999999999999999999999999999999998884
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.20 E-value=8.7e-12 Score=115.97 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChhhhhcc-------cc-c-CC
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQ-------VA-E-NK 303 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~~~~~~-------~~-~-~~ 303 (461)
...+.+..++.|++++++++|++|+.++++.. .+...+| ++++||.||+|+|......+++.. +. . ..
T Consensus 222 ~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~-v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~ 300 (347)
T d2ivda1 222 QVLIDALAASLGDAAHVGARVEGLAREDGGWR-LIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNL 300 (347)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEECC--CCE-EEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBT
T ss_pred HHHHHHHHHHhhcccccCCEEEEEEEeCCeEE-EEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceec
Confidence 34445555667899999999999987444433 2223343 468999999999853333333211 00 0 11
Q ss_pred Cc---EEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 304 GG---IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 304 g~---i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
+. +...+...++.|++|++||...+. .+..+..+|+.+|+.|+
T Consensus 301 ~~~~~~~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 301 GHLERVAAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV 346 (347)
T ss_dssp THHHHHHHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred CcccceecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence 11 111122235799999999987653 35667889999998876
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.20 E-value=1.2e-10 Score=107.13 Aligned_cols=58 Identities=19% Similarity=0.355 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+..+...+.+.+++.|++++.+++|++++..++ . ..|++++| ++.||.||+|+|...+
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-v~V~t~~g-~i~a~~VViAaG~~s~ 206 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPD-S-VKIETANG-SYTADKLIVSMGAWNS 206 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSS-C-EEEEETTE-EEEEEEEEECCGGGHH
T ss_pred ccccccccccccccccccccCCcEEEEEEEECC-E-EEEEECCc-EEEcCEEEECCCCcch
Confidence 567788889999999999999999999998433 3 47888888 7999999999996543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.20 E-value=3.4e-11 Score=104.92 Aligned_cols=111 Identities=17% Similarity=0.242 Sum_probs=81.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHc
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
++|+|||||++|+.+|..|++.+. ..+|+++++++...|..+.++. ++... ..... .......+.+++.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~-~~~V~v~~~~~~~~~~~~~~~~-~l~~~-~~~~~--------~~~~~~~~~l~~~ 69 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGK-VKDVN--------SVRYMTGEKMESR 69 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTS-SCCGG--------GSBSCCHHHHHHT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC-CCeEEEEeCCCcccccccCcch-hhccc-ccchH--------HHHHhhHHHHHHC
Confidence 379999999999999999999864 5679999999876666443332 11111 11110 0123456788899
Q ss_pred CcEEEcCCeEEEEeCCCCEEEc---CCCc--EEecCEEEEccCCCcc
Q 012545 86 GIELILSTEIVRADIASKTLLS---ATGL--IFKYQILVIATGSTVS 127 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~---~~~~--~~~~d~liiAtG~~~~ 127 (461)
|+++++++.|.+++.+.+.+++ .+++ ++.||.+++|+|+.++
T Consensus 70 gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~ 116 (198)
T d1nhpa1 70 GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF 116 (198)
T ss_dssp TCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred CcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceee
Confidence 9999999999999999888754 3443 5789999999998873
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=8.9e-11 Score=93.88 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=82.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
++++|+|||+|.+|+|.|..|.+...+|+++.|.+.+- .++.+.+.+.+..+..++.++.++.+.++.. ++..+..
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G-~~~~v~~ 101 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTG 101 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEE-CSSSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcccceeEecceEEEEEEC-CCCceEE
Confidence 68999999999999999999999999999999988763 3788888888888889999999999999998 3445778
Q ss_pred EEeCCC------cEEecCEEEEccC
Q 012545 269 VKLKDG------RTLEADIVVVGVG 287 (461)
Q Consensus 269 v~~~~G------~~i~aD~vi~a~G 287 (461)
|++.|. +++++|-|++++|
T Consensus 102 v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 102 VRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EEEECCTTCCCCEEEECSEEEECSC
T ss_pred EEEEECCCCceEEEEECCEEEEEeC
Confidence 887653 4699999999987
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.19 E-value=5e-11 Score=112.73 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCCCCh------------h
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRPLI------------S 293 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~p~~------------~ 293 (461)
...+...+.+..++.|++++.++.+.++.. +++++..+.. .+|+ .+.++.||+|||--... +
T Consensus 157 G~~i~~~l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGd 235 (336)
T d2bs2a2 157 GHTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGT 235 (336)
T ss_dssp HHHHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCH
T ss_pred HHHHHHHHHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccch
Confidence 455666777888889999999999998887 4666655544 4564 57899999999843211 0
Q ss_pred ----hhhccc-cc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 294 ----LFKGQV-AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 294 ----~~~~~~-~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
.+..+. .. +.++|.+|.+.+|+.|++|++||++.......+ ...-..+..+...+..+++.+..
T Consensus 236 g~~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~-~~~~~~~~e~~~~~~~~ge~~~~ 305 (336)
T d2bs2a2 236 GTAIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFN-RLGGNSVSEAVVAGMIVGEYFAE 305 (336)
T ss_dssp HHHHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTC-CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhccccceeechhhcccCCcceeccccccccccccc-cchhhccchhhhhcchhHHHHHh
Confidence 113332 23 678999999999999999999998754321000 00002344455556666655543
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.4e-11 Score=103.83 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=84.1
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc-------------------------
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID------------------------- 215 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~------------------------- 215 (461)
+||.+.++|++..++ |.. ....+++|+|||+|++|+|+|..+.+.|.+
T Consensus 7 IpG~d~~~V~~a~d~-----L~~--~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T d1ps9a2 7 IDGIDHPKVLSYLDV-----LRD--KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLS 79 (162)
T ss_dssp CBTTTSTTEEEHHHH-----HTS--CCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBC
T ss_pred CCCCCCCCeEEHHHH-----hhC--ccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccc
Confidence 899999999974322 111 112578999999999999999999998754
Q ss_pred ------------EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCE
Q 012545 216 ------------VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADI 281 (461)
Q Consensus 216 ------------Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~ 281 (461)
++.+..........++..........++..||+++.++++.+++. +|.. +.. +| ++++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~--~~~-~g~e~~i~aD~ 154 (162)
T d1ps9a2 80 PQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLH--VVI-NGETQVLAVDN 154 (162)
T ss_dssp TTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEE--EEE-TTEEEEECCSE
T ss_pred cccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCE--Eec-CCeEEEEECCE
Confidence 344444333333335566677788899999999999999999974 5532 332 34 3589999
Q ss_pred EEEccCC
Q 012545 282 VVVGVGG 288 (461)
Q Consensus 282 vi~a~G~ 288 (461)
||+|+|.
T Consensus 155 Vv~A~Gq 161 (162)
T d1ps9a2 155 VVICAGQ 161 (162)
T ss_dssp EEECCCE
T ss_pred EEECCCC
Confidence 9999994
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=7.8e-11 Score=92.96 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=73.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||||+.|+.+|..|++.|.+ |+|+|+.+..- +... +. ......+.+++
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~~l---~~~d------------~~--------~~~~~~~~l~~ 74 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPL---PSFD------------PM--------ISETLVEVMNA 74 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTSC------------HH--------HHHHHHHHHHH
T ss_pred CCEEEEECCChhhHHHHHHhhccccE---EEEEeecchhh---hhcc------------hh--------hHHHHHHHHHH
Confidence 57899999999999999999999986 99999986421 0000 00 01345677888
Q ss_pred cCcEEEcCCeEEEEeCCCC---EEEcCCCcEEecCEEEEccC
Q 012545 85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATG 123 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~liiAtG 123 (461)
.|++++.++.++.+..... .+.+.+|+++++|.+++|+|
T Consensus 75 ~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 75 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred CCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 9999999999999875442 57788999999999999998
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.16 E-value=2e-11 Score=113.18 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=82.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCcccccccCCCCCCCCCCce-------ee----
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEGTARLPGFH-------VC---- 69 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~---- 69 (461)
..||+|||||++||++|.+|++.|++ |+|+|+++...- .+.+ .............+... ..
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~---v~i~Ek~~~iGGtW~~n~yp-g~~~d~~~~~~~~s~~~~~~~~~~~~~~~p 82 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYP-GARCDIESIEYCYSFSEEVLQEWNWTERYA 82 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCT-TCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCC---EEEEEcCCCcccccccCCCC-CceeccccccccccccccccCCCCCccccC
Confidence 57999999999999999999999986 999999875321 1100 00000000000000000 00
Q ss_pred cCCCCCCCCHhHHHHcCc--EEEcCCeEEEEeC--CCC--EEEcCCCcEEecCEEEEccC--CCcccccccccc
Q 012545 70 VGSGGERLLPEWYKEKGI--ELILSTEIVRADI--ASK--TLLSATGLIFKYQILVIATG--STVSITSLTSIR 135 (461)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~--~~~--~v~~~~~~~~~~d~liiAtG--~~~~~~~~~g~~ 135 (461)
.......++.++.+++++ .+.++++|+++.. +.+ .|.+.++.++++|.+|+||| +.|.+|.+||+.
T Consensus 83 ~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~ 156 (298)
T d1w4xa1 83 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKID 156 (298)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSE
T ss_pred ccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccc
Confidence 000111234555667787 4899999999863 333 57788888999999999999 788889888885
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.14 E-value=7.3e-11 Score=93.73 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++++|||||+.|+.+|..|+++|.+ |+++|+.+..- .+ . ++ ........+.++
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~~l-~~------~--------~~-------~~~~~~~~~~l~ 83 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLM-SR------A--------AP-------ATLADFVARYHA 83 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT-TT------T--------SC-------HHHHHHHHHHHH
T ss_pred cCCeEEEECcchhHHHHHHHhhcccce---EEEEeeccccc-cc------c--------CC-------HHHHHHHHHHHH
Confidence 357999999999999999999999876 99999997421 00 0 00 000124567788
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG 123 (461)
+.||++++++.++++.. ..+.+.+|+++++|.+|+|+|
T Consensus 84 ~~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 84 AQGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp TTTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred HCCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence 89999999999988754 468889999999999999998
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.13 E-value=1e-10 Score=98.79 Aligned_cols=104 Identities=29% Similarity=0.391 Sum_probs=77.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
+|||||||++|+.+|..|++ +.+ |+|+++++...|.++.++..+........ ......+++.+.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~---Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 66 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYE---VTVIDKEPVPYYSKPMLSHYIAGFIPRNR-----------LFPYSLDWYRKRG 66 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSE---EEEECSSSSCCCCSTTHHHHHTTSSCGGG-----------GCSSCHHHHHHHT
T ss_pred eEEEECCcHHHHHHHHHHHc-CCC---EEEEeccccccccccchhhhhhhhhhhhh-----------hhHHHHHHHHhcc
Confidence 79999999999999999976 444 99999998766665544432221110000 1245677888999
Q ss_pred cEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCc
Q 012545 87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
++++.++.++.++...+.+.. ++.++.||.+++|+|..+
T Consensus 67 v~~~~~~~v~~i~~~~~~~~~-~~~~i~~D~li~a~G~~~ 105 (167)
T d1xhca1 67 IEIRLAEEAKLIDRGRKVVIT-EKGEVPYDTLVLATGAPN 105 (167)
T ss_dssp EEEECSCCEEEEETTTTEEEE-SSCEEECSEEEECCCEEC
T ss_pred ceeeeeccccccccccccccc-cccccccceeEEEEEecC
Confidence 999999999999887666555 555699999999999876
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.12 E-value=4.3e-11 Score=109.78 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|.+.+||||||||++|+++|++|+++|.+ |+|||+++.
T Consensus 1 m~~~~DvvIIGaGi~Gls~A~~La~~G~~---V~vlE~~~~ 38 (276)
T d1ryia1 1 MKRHYEAVVIGGGIIGSAIAYYLAKENKN---TALFESGTM 38 (276)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 55679999999999999999999999987 999999863
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.12 E-value=7e-11 Score=95.61 Aligned_cols=95 Identities=16% Similarity=0.295 Sum_probs=73.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++++|||||+.|+.+|..|++.|.+ |+|+|+.+.. +.+ . ++. .......+.++
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~---Vtvie~~~~~-l~~------~--------~~~-------~~~~~~~~~~~ 88 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMH---VTLLDTAARV-LER------V--------TAP-------PVSAFYEHLHR 88 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSST-TTT------T--------SCH-------HHHHHHHHHHH
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcc---eeeeeecccc-ccc------c--------cch-------hhhhhhhhccc
Confidence 357999999999999999999999887 9999999742 110 0 000 00123456778
Q ss_pred HcCcEEEcCCeEEEEeCCC-----CEEEcCCCcEEecCEEEEccC
Q 012545 84 EKGIELILSTEIVRADIAS-----KTLLSATGLIFKYQILVIATG 123 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~-----~~v~~~~~~~~~~d~liiAtG 123 (461)
+.||++++++.++.++... ..+.+.+|+++++|.+|+|+|
T Consensus 89 ~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 89 EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp HHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred ccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 8999999999999987543 236789999999999999998
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.6e-10 Score=90.22 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=80.8
Q ss_pred CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhc
Q 012545 166 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 245 (461)
Q Consensus 166 ~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (461)
.++|+++...+ ...+ ++++|+|+|+|.+|+|.|..|++...+|+++.|.+.+.. ++...+ +..+..
T Consensus 14 gkGV~yca~cD-~~~~-------~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~~~---~~~~~~ 79 (126)
T d1fl2a2 14 TKGVTYCPHCD-GPLF-------KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVLQD---KLRSLK 79 (126)
T ss_dssp TTTEESCHHHH-GGGG-------BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHHHH---HHHTCT
T ss_pred CCCEEEEEecC-hhhc-------CCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---cccccc---cccccc
Confidence 46677764443 2222 689999999999999999999999999999999887643 333322 223335
Q ss_pred CcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccC
Q 012545 246 GIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVG 287 (461)
Q Consensus 246 GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G 287 (461)
+|++++++++.++.. +++.+.++++.+ | +++++|-+++++|
T Consensus 80 ~I~v~~~~~v~~i~G-~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 80 NVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp TEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred ceeEEcCcceEEEEc-cccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 699999999999998 335677787754 4 3699999999998
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.05 E-value=1.3e-10 Score=100.74 Aligned_cols=150 Identities=18% Similarity=0.178 Sum_probs=100.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCccCCc--------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFT 259 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~ 259 (461)
.+++|+|||+|++|+++|..|+++|. +|+++++.+.+... .................+..+.....+....
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 82 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE 82 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence 47899999999999999999999998 59999999876432 1344555556666677778887766542211
Q ss_pred ecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh--h---ccccc-CCCcEEeC-CCCCCCCCCEEEeCcccccCccc
Q 012545 260 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF--K---GQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFPMKL 332 (461)
Q Consensus 260 ~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~--~---~~~~~-~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~ 332 (461)
..+.+..+..++.+++++|..+..... . ..... ..+....+ ..++|+.+.||++||+++...
T Consensus 83 ---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~-- 151 (196)
T d1gtea4 83 ---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN-- 151 (196)
T ss_dssp ---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC--
T ss_pred ---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc--
Confidence 111222345678899999965433222 1 11111 33444444 568899999999999997653
Q ss_pred cCcceeeccHHHHHHHHHHHHHHHh
Q 012545 333 YREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 333 ~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
+...|..+|+.++..+.
T Consensus 152 --------~av~a~~~g~~~a~~v~ 168 (196)
T d1gtea4 152 --------TTVESVNDGKQASWYIH 168 (196)
T ss_dssp --------CHHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHhhhehhHh
Confidence 34556677777777664
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.02 E-value=1.1e-10 Score=108.75 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=67.5
Q ss_pred CcEEEcCCcEEEEEecCCCC----EEEEEe-----CCCcEEecCEEEEccCCCCChhhh--hcc-------ccc-----C
Q 012545 246 GIKIIKGTVAVGFTTNADGE----VKEVKL-----KDGRTLEADIVVVGVGGRPLISLF--KGQ-------VAE-----N 302 (461)
Q Consensus 246 GV~v~~~~~v~~i~~~~~g~----~~~v~~-----~~G~~i~aD~vi~a~G~~p~~~~~--~~~-------~~~-----~ 302 (461)
+.+++++++|++|....++. ...+.. .+++++++|.||+|++......+. ... +.. .
T Consensus 243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
T d1seza1 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY 322 (373)
T ss_dssp TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence 56789999999998643321 122222 234678999999998742211100 000 000 0
Q ss_pred CCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccC
Q 012545 303 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 361 (461)
Q Consensus 303 ~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 361 (461)
++.+.+++.++|+.|+||++||+.+++ .+..|..+|+.||..|+..+.
T Consensus 323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~~L~ 370 (373)
T d1seza1 323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVISYLE 370 (373)
T ss_dssp HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHHHHS
T ss_pred CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHHHHh
Confidence 112334456788999999999998753 467899999999999987663
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.01 E-value=1.4e-10 Score=101.73 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=69.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc-c-----ccccCCCCCCCCCCceeecCCCCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL-S-----KAYLFPEGTARLPGFHVCVGSGGERLL 78 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (461)
.||||||||||||+.||..++|.|.+ ++||+++.......++. . ++.+..+....-+.... .....
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~k---tllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a-----~raQ~ 73 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWA-----FHARA 73 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHH-----HHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCc---EEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhh-----HHHHH
Confidence 69999999999999999999999998 99999873211111110 0 11100000000000000 00001
Q ss_pred -HhHHHHcCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCCCc
Q 012545 79 -PEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 79 -~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~~~ 126 (461)
.......+++++.+ +|.++..++.. |.+.+|.++.++.|||+||.--
T Consensus 74 k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 74 KYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp HHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred HHHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence 11223358899887 77777655543 6788898899999999999865
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.00 E-value=6.2e-10 Score=87.55 Aligned_cols=93 Identities=19% Similarity=0.286 Sum_probs=69.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+|+|+.+..- +. + ... ......+.+++
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~---Vtlve~~~~il---~~----~-----d~~-----------~~~~l~~~l~~ 74 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERIL---PT----Y-----DSE-----------LTAPVAESLKK 74 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---TT----S-----CHH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccc---eEEEeeecccc---cc----c-----cch-----------hHHHHHHHHHh
Confidence 57999999999999999999999986 99999986421 00 0 000 01345677888
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATG 123 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG 123 (461)
.|++++.+++|.+++.....+...++ +++++|.+++|+|
T Consensus 75 ~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 75 LGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp HTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred hcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 99999999999999754433333333 5799999999998
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.98 E-value=2.5e-09 Score=100.84 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
|...++|+|||||++||+||..|++.+. ..+|+|+||++..
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~~~i 41 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSP 41 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSS
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence 4456899999999999999999988764 2359999999754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.98 E-value=1.9e-09 Score=84.94 Aligned_cols=96 Identities=15% Similarity=0.275 Sum_probs=72.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||||+.|+.+|..+.+......+|+++++.+..- ..+ ... ......+.+++
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-------~~~-----d~~-----------~~~~~~~~l~~ 74 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-------RGF-----DSE-----------LRKQLTEQLRA 74 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-------TTS-----CHH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-------ccc-----cch-----------hhHHHHHHHhh
Confidence 5799999999999999988777643344599999986421 000 000 01345677889
Q ss_pred cCcEEEcCCeEEEEeCCC---CEEEcCCCcEEecCEEEEccC
Q 012545 85 KGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATG 123 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~liiAtG 123 (461)
.||++++++.+.++.... ..+.+.+|+++++|.+++|+|
T Consensus 75 ~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 75 NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred CcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 999999999999997543 257889999999999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.97 E-value=1.3e-09 Score=86.19 Aligned_cols=94 Identities=15% Similarity=0.278 Sum_probs=71.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
...+++|||||+.|+-+|..|++.|.+ |+++++.+..- |.. ... ......+.++
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~---Vtiv~~~~~ll---~~~---------d~e-----------i~~~l~~~l~ 74 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFL---PAV---------DEQ-----------VAKEAQKILT 74 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS---TTS---------CHH-----------HHHHHHHHHH
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCCc---eEEEEeecccC---Ccc---------cch-----------hHHHHHHHHH
Confidence 357999999999999999999999987 99999986421 000 000 0134567788
Q ss_pred HcCcEEEcCCeEEEEeCCCCE--EEcCCC---cEEecCEEEEccC
Q 012545 84 EKGIELILSTEIVRADIASKT--LLSATG---LIFKYQILVIATG 123 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~liiAtG 123 (461)
+.|+++++++++++++..+.. +++.++ +++.+|.+++|+|
T Consensus 75 ~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 75 KQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp HTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred hcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 899999999999999876653 444332 5789999999998
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=2.5e-10 Score=98.60 Aligned_cols=111 Identities=21% Similarity=0.225 Sum_probs=71.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeec-CCCCCCCCHhHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWY 82 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (461)
+.+||+||||||+||+||..|+|.|.+ |+|||+..... .+........++.+.... +...........
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~---v~iie~~~~~g--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 72 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGG--------QLTTTTEVENWPGDPNDLTGPLLMERMHEHA 72 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSSTTG--------GGGGCSBCCCSTTCCSSCBHHHHHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc---eEEEEeecccc--------cccccchhhhhhccccccchHHHHHHHHHHH
Confidence 568999999999999999999999987 99999875421 111111222222221110 001111233445
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEE-cCCCcEEecCEEEEccCCCc
Q 012545 83 KEKGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~liiAtG~~~ 126 (461)
.+.++++..+ .|+.++....... ......+..+.+++++|..+
T Consensus 73 ~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~ 116 (190)
T d1trba1 73 TKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASA 116 (190)
T ss_dssp HHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEE
T ss_pred HhcCcEEecc-eeEEEecCCCcEEEEEeeeeEeeeeeeeecceee
Confidence 6688888876 7888887665322 23445689999999999765
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=1e-09 Score=102.12 Aligned_cols=91 Identities=23% Similarity=0.394 Sum_probs=66.5
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCC------CCEEEEEe---CCCc--EEecCEEEEccCCCCCh------------h
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNAD------GEVKEVKL---KDGR--TLEADIVVVGVGGRPLI------------S 293 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~------g~~~~v~~---~~G~--~i~aD~vi~a~G~~p~~------------~ 293 (461)
.+.+.+++.+++++.++.+.++..+++ +++.++.. .+++ .+.++.||+|+|--... +
T Consensus 143 ~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGD 222 (305)
T d1chua2 143 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGD 222 (305)
T ss_dssp CHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCH
T ss_pred HHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecc
Confidence 445677888999999999999987433 25666655 2443 47899999999943211 1
Q ss_pred ---h-hhccccc-CCCcEEeCCCCCCCCCCEEEeCcccc
Q 012545 294 ---L-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVAT 327 (461)
Q Consensus 294 ---~-~~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~ 327 (461)
. ++.+..+ +.++|.+|.+.+|+.|++||+|+++.
T Consensus 223 G~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~ 261 (305)
T d1chua2 223 GIAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY 261 (305)
T ss_dssp HHHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred cEeeccccceeeEecceeEECCcccCCCCCceecccEEE
Confidence 1 1345555 67899999999999999999999754
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.95 E-value=3.7e-08 Score=94.08 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---------------CcEEecCEEEEccCCCCChh--h
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---------------GRTLEADIVVVGVGGRPLIS--L 294 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---------------G~~i~aD~vi~a~G~~p~~~--~ 294 (461)
.....++.+..++.|+.+..+..+.++..++++.+..+...+ +....++..+++.|.+.... +
T Consensus 141 ~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~l 220 (380)
T d2gmha1 141 GHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQL 220 (380)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHH
T ss_pred hHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHH
Confidence 344556677778888999999888888876666655544432 12466888999999766442 2
Q ss_pred hhcc-ccc---CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 295 FKGQ-VAE---NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 295 ~~~~-~~~---~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+..- +.. ..+++. .--+...+++..+||+++.-++..+ +-+..|+.+|+.||+.+...+
T Consensus 221 i~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g-----~GI~~Am~SG~lAAeai~~al 283 (380)
T d2gmha1 221 YKKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKI-----KGTHTAMKSGTLAAESIFNQL 283 (380)
T ss_dssp HHHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTT-----BCHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhccccccccccc--cccccccCCeeEEeccccccchhhc-----CCeeeeeccHHHHHHHHHHHH
Confidence 2111 111 111110 0012346899999999998766544 567889999999999987543
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.95 E-value=1.6e-09 Score=98.20 Aligned_cols=137 Identities=23% Similarity=0.338 Sum_probs=86.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc----------------------------------cC------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------FT------ 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~----------------------------------~~------ 231 (461)
.++|||+|+.|+.+|..+++.|.+|.++++.. +.... ++
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 81 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE 81 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence 47999999999999999999999999999753 11000 00
Q ss_pred ------HHHHHHHHHHHHhcCcEEEcCCc-E-----EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC-----Chhh
Q 012545 232 ------ADIAAFYEGYYANKGIKIIKGTV-A-----VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP-----LISL 294 (461)
Q Consensus 232 ------~~~~~~~~~~l~~~GV~v~~~~~-v-----~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p-----~~~~ 294 (461)
..+.+.+...+++.||+++.+.- . ..+...++.........+++++++|.||+|||.+| +.+.
T Consensus 82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~ 161 (259)
T d1onfa1 82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN 161 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence 12233356677889999987642 1 11111011111111122345799999999999998 3333
Q ss_pred h---hcccccCCCcEEeCCCCCCCCCCEEEeCcccccC
Q 012545 295 F---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 329 (461)
Q Consensus 295 ~---~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~ 329 (461)
+ ...+..+++.+.+|+..+|++.++|++||++...
T Consensus 162 ~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~ 199 (259)
T d1onfa1 162 LKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK 199 (259)
T ss_dssp SSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred cccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence 3 2234447889999999999999999999998654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.94 E-value=2.5e-09 Score=99.28 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+...+.+.+++.|++++.+++|+++.. +++++..|.+++| +++||.||+|+|...
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~s 204 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG 204 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred hhhhhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchhH
Confidence 567788888999999999999999999998 5677778999888 799999999999654
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.93 E-value=2.8e-09 Score=85.12 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=80.9
Q ss_pred CCCEEEeCCHHHH-HHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHh
Q 012545 166 AKNIFYLREIDDA-DKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 244 (461)
Q Consensus 166 ~~~v~~~~~~~~~-~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (461)
.++|.++.+++.+ ..+ +++.|+|+|+|.+|+|.|..|++...+|++++|.+.+-. ++... .+.++.
T Consensus 16 gkGVsyca~CDg~a~~f-------rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~---~~l~~~ 82 (130)
T d1vdca2 16 NRGISACAVCDGAAPIF-------RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSN 82 (130)
T ss_dssp TTTEESCHHHHTTSGGG-------TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTC
T ss_pred CCcEEEEEEecCchHHh-------CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhh---hccccC
Confidence 4677777665532 122 689999999999999999999999999999999988653 33333 344455
Q ss_pred cCcEEEcCCcEEEEEecCC-CCEEEEEeCC---C--cEEecCEEEEcc
Q 012545 245 KGIKIIKGTVAVGFTTNAD-GEVKEVKLKD---G--RTLEADIVVVGV 286 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~---G--~~i~aD~vi~a~ 286 (461)
.+|++++++++.++..+++ +.+..+++.+ | +++++|-+++++
T Consensus 83 ~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 83 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred CceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 6799999999999998432 4466666532 3 579999999875
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.92 E-value=1e-09 Score=87.31 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||||+.|+.+|..|+++|.+ |+|+|+.+.. +.+ .+. . .......+++++
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~---Vtlie~~~~~-l~~------~~d----~-----------~~~~~~~~~l~~ 84 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRP-LGV------YLD----K-----------EFTDVLTEEMEA 84 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSST-TTT------TCC----H-----------HHHHHHHHHHHT
T ss_pred CCEEEEECChHHHHHHHHHhhccceE---EEEEEecCcc-ccc------ccc----h-----------hhHHHHHHHhhc
Confidence 56999999999999999999999987 9999998642 100 000 0 001245677888
Q ss_pred cCcEEEcCCeEEEEeCCCC-EEEcCCCcEEecCEEEEcc
Q 012545 85 KGIELILSTEIVRADIASK-TLLSATGLIFKYQILVIAT 122 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~v~~~~~~~~~~d~liiAt 122 (461)
.|+++++++.+.+++.+++ ...+.+++++++|.+|+|.
T Consensus 85 ~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 85 NNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp TTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred CCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 9999999999999987654 2346688889999999983
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.91 E-value=1.6e-09 Score=86.00 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=69.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||||+.|+.+|..|++.|.+ |+|+++.+... + + + .. ......+.+++
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~l~---~-~------d---~~-----------~~~~~~~~l~~ 84 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYH---VKLIHRGAMFL---G-L------D---EE-----------LSNMIKDMLEE 84 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCE---EEEECSSSCCT---T-C------C---HH-----------HHHHHHHHHHH
T ss_pred CCcEEEECCcHHHHHHHHHhhcccce---EEEEecccccc---C-C------C---HH-----------HHHHHHHHHHH
Confidence 36899999999999999999999987 99999986421 0 0 0 00 01245677888
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~ 124 (461)
.|++++.++.+.+++.+ .+ +.+++.+++|.+|+|+|.
T Consensus 85 ~GV~~~~~~~v~~~~~~--~v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 85 TGVKFFLNSELLEANEE--GV-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp TTEEEECSCCEEEECSS--EE-EETTEEEECSCEEEECCE
T ss_pred CCcEEEeCCEEEEEeCC--EE-EeCCCEEECCEEEEEEEe
Confidence 99999999999888643 34 446677999999999994
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.90 E-value=4.2e-09 Score=82.89 Aligned_cols=95 Identities=14% Similarity=0.229 Sum_probs=73.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..+.+.+.+..+|+|+|+.+..- +..... ......+.+++
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL------------~~~d~~-----------~~~~l~~~l~~ 76 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL------------RGFDHT-----------LREELTKQLTA 76 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS------------TTSCHH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh------------cccchH-----------HHHHHHHHHHh
Confidence 5799999999999999999988876666799999986411 000000 02346778889
Q ss_pred cCcEEEcCCeEEEEeCCC---CEEEcCCCcEEecCEEEEcc
Q 012545 85 KGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIAT 122 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~liiAt 122 (461)
.||++++++.+.+++... ..+.+++|+++++|.+++|.
T Consensus 77 ~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 77 NGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred cCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 999999999999997432 35888999999999999983
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.89 E-value=1.1e-08 Score=87.37 Aligned_cols=121 Identities=24% Similarity=0.332 Sum_probs=84.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
...||||||||++|+.+|..|+++|.+ ..|+++++.+..++.+..+...+.... .... ...........
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~~~ 70 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGK----ATAE------SLYLRTPDAYA 70 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCC-SEEEEECSCCSCCBCSGGGGTTTTTTC----SCSG------GGBSSCHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCc-eEEEEecCccccchhhhHHHHHHHHhh----hhhh------hhhhhhhhhhc
Confidence 457999999999999999999999875 334445555444444333222221111 1000 11234566677
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccccc
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
..+..+..+..+..++.+...+...++.++.+|.+++++|..|..|.+...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~ 122 (185)
T d1q1ra1 71 AQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122 (185)
T ss_dssp HTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHH
T ss_pred ccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHH
Confidence 7888899988999999988999999999999999999999998776664443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.89 E-value=1.1e-09 Score=102.86 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=65.7
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--CCCcEEecCEEEEccCCC--------CChhhh-hcccc---cCCCcE
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGRTLEADIVVVGVGGR--------PLISLF-KGQVA---ENKGGI 306 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G~~i~aD~vi~a~G~~--------p~~~~~-~~~~~---~~~g~i 306 (461)
.+++.|++++++++|++|..++++....+.. .++++++||.||+|++.. |..... ...+. ......
T Consensus 244 l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~~ 323 (370)
T d2iida1 244 MYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQFQ 323 (370)
T ss_dssp HHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHHH
T ss_pred HHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCccccc
Confidence 3466799999999999999855543333333 344689999999998631 221100 00000 000011
Q ss_pred EeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 307 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 307 ~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
..+..+.+...+||++||++..+. ..+..|..+|..||.+|-
T Consensus 324 ~~~~~~~~~~g~v~~aGd~~~~~~---------~~~~~a~~sG~~aA~~i~ 365 (370)
T d2iida1 324 HFSDPLTASQGRIYFAGEYTAQAH---------GWIDSTIKSGLRAARDVN 365 (370)
T ss_dssp HHHHHHHCCBTTEEECSGGGSSSS---------SCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccCCEEEecccccCCC---------cccHHHHHHHHHHHHHHH
Confidence 111223334567999999887653 346678999999999874
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.89 E-value=9.2e-11 Score=105.01 Aligned_cols=110 Identities=12% Similarity=0.136 Sum_probs=66.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCC----CCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHh
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVK----PGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE 80 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~----~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
.++|+|||||||||+||.+|+++|+. ..+|+|+|+.+... +++............ ........
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G--------G~~~~gi~p~~~~~~-----~~~~~~~~ 68 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW--------GLVRSGVAPDHPKIK-----SISKQFEK 68 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS--------THHHHTSCTTCTGGG-----GGHHHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC--------CeeeeccCcccccch-----hhhhhhhh
Confidence 46999999999999999999999852 23599999997532 111111000000000 00112334
Q ss_pred HHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccc
Q 012545 81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
++...+++++.++.+. +.+..++ ....||.+++|||+.+..+.++|.
T Consensus 69 ~~~~~g~~~~~~~~v~------~~~~~~~-~~~~~~~v~~atGa~~~~~~~~g~ 115 (239)
T d1lqta2 69 TAEDPRFRFFGNVVVG------EHVQPGE-LSERYDAVIYAVGAQSRGVPTPGL 115 (239)
T ss_dssp HHTSTTEEEEESCCBT------TTBCHHH-HHHHSSEEEECCCCCEECCCCTTS
T ss_pred hhccCCceEEEEEEec------cccchhh-hhccccceeeecCCCccccccccc
Confidence 5566789998886541 1111111 124799999999998765555554
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.9e-09 Score=87.54 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=71.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHH----cCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHh
Q 012545 5 SFKYVILGGGVSAGYAAREFAK----QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE 80 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~----~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
.++++|||||+.|+.+|..|++ .|.+ |+++++++..- . . . ++. .......+
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~---Vt~i~~~~~~l-~-----~-~--------~~~-------~~~~~~~~ 91 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTE---VIQLFPEKGNM-G-----K-I--------LPE-------YLSNWTME 91 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCE---EEEECSSSSTT-T-----T-T--------SCH-------HHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCE---EEEecccccCC-c-----c-c--------CCH-------HHHHHHHH
Confidence 4689999999999999988864 4554 99999986411 0 0 0 000 00124567
Q ss_pred HHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccC
Q 012545 81 WYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATG 123 (461)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG 123 (461)
.+++.||+++.++.+.+++.++. .+.+++|+++.+|.+|+|+|
T Consensus 92 ~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 92 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp HHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred HHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence 78889999999999999976554 47888999999999999998
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.88 E-value=6.2e-10 Score=96.21 Aligned_cols=119 Identities=16% Similarity=0.210 Sum_probs=72.8
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeec-CCCCCCCCH
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLP 79 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (461)
|-...+||+||||||+|++||..|+|.|.+ ++|+|+........ ...+.......+++++.... +.+....+.
T Consensus 1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~---v~vie~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~el~~~~~ 74 (192)
T d1vdca1 1 LETHNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMANDIAP---GGQLTTTTDVENFPGFPEGILGVELTDKFR 74 (192)
T ss_dssp CEEEEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTBCT---TCGGGGCSEECCSTTCTTCEEHHHHHHHHH
T ss_pred CCcccceEEEECCCHHHHHHHHHHHHcCCc---EEEEEeeccccccc---ccccccchhhhccccccccccchHHHHHHH
Confidence 434579999999999999999999999988 89999875432211 11111111112222221100 001111223
Q ss_pred hHHHHcCcEEEcCCeEEEEeCCCCEE-EcCCCcEEecCEEEEccCCCc
Q 012545 80 EWYKEKGIELILSTEIVRADIASKTL-LSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 80 ~~~~~~~v~~~~~~~v~~i~~~~~~v-~~~~~~~~~~d~liiAtG~~~ 126 (461)
+...++++++..+ .|..++...+.. ...+.....+|.+++++|...
T Consensus 75 ~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~ 121 (192)
T d1vdca1 75 KQSERFGTTIFTE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAVA 121 (192)
T ss_dssp HHHHHTTCEEECC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEEE
T ss_pred HHHHhhcceeeee-eEEecccccCcEEecccceeeeeeeEEEEeeeee
Confidence 3345689998876 688887666532 233445689999999999653
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=8.8e-09 Score=87.01 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=72.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
.+++|+|||+|+.|+++|..|+++|.+|+++++.+.+... ....++.+++.+.+++.||++++++.|+.
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~- 120 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA- 120 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS-
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc-
Confidence 5899999999999999999999999999999998765322 12346778888999999999999987632
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+ ....+|.||+|+|..|...
T Consensus 121 ----~-----------~~~~~d~vilAtG~~~~~~ 140 (179)
T d1ps9a3 121 ----D-----------QLQAFDETILASGIPNRAL 140 (179)
T ss_dssp ----S-----------SSCCSSEEEECCCEECCTT
T ss_pred ----c-----------ccccceeEEEeecCCCccc
Confidence 1 1346799999999877653
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.83 E-value=6.7e-09 Score=81.54 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=70.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++++|||||+.|+.+|..|++.|.+ |+|+++.+..- . .+ ... ......+.++
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~il-~------~~-----d~~-----------~~~~~~~~l~ 74 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRIL-R------KF-----DES-----------VINVLENDMK 74 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSC-T------TS-----CHH-----------HHHHHHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHHHhcccc---ceeeehhcccc-c------cc-----cHH-----------HHHHHHHHHH
Confidence 357899999999999999999999876 99999986421 0 00 000 0134567788
Q ss_pred HcCcEEEcCCeEEEEeCCC---CEEEcCCCcEE-ecCEEEEcc
Q 012545 84 EKGIELILSTEIVRADIAS---KTLLSATGLIF-KYQILVIAT 122 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~-~~d~liiAt 122 (461)
+.||++++++.+++++... .++.+.+|+.+ .||.+++|.
T Consensus 75 ~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 75 KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp HTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred hCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 8999999999999997433 25778899877 589999983
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.82 E-value=6.5e-10 Score=98.23 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=33.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.++|+|||||||||++||..++++|.+ |+|||++..
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~---V~liE~~~~ 39 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQAL 39 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCT
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 369999999999999999999999987 999999854
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=3.1e-09 Score=90.79 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=68.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.|||+||||||+|++||..+++.|.+ |+|||+... ..+.......+++.+....+......+....++
T Consensus 1 ~yDViIIGgGpaGl~AAi~aar~G~~---v~iie~~~g---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (184)
T d1fl2a1 1 AYDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFG---------GQILDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (184)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTT---------GGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCe---EEEEEEecC---------CcccccccceeccccchhhhHHHHHHHHHHhhh
Confidence 48999999999999999999999987 999998631 111111111222222211111111123344556
Q ss_pred cCcEEEcCCeEEEEeCCC-----CEEEcCCCcEEecCEEEEccCCCc
Q 012545 85 KGIELILSTEIVRADIAS-----KTLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-----~~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
.+.+......+..+.... +.....++.++..+.+++++|..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 115 (184)
T d1fl2a1 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL 115 (184)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred eeceeeccceeeeecccccccceeeeeeecceeeecccccccccccc
Confidence 778887776776665432 223445666799999999999655
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.80 E-value=4e-08 Score=90.47 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=83.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------c--cCHHH
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L--FTADI 234 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------~--~~~~~ 234 (461)
-.|+|||+|++|+-+|..|.+.|.+|+++++.+.+... . -.+++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~ 87 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 87 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence 36999999999999999999999999999987553110 0 02366
Q ss_pred HHHHHHHHHhcCc--EEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC--CCChh
Q 012545 235 AAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLIS 293 (461)
Q Consensus 235 ~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~--~p~~~ 293 (461)
.+++++..++.++ .++++++|+++..+++.....|++.++.++.+|.||+|+|. .|..+
T Consensus 88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p 150 (298)
T d1w4xa1 88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTG 150 (298)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTH
T ss_pred HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCC
Confidence 7788888999998 59999999999875566667899999999999999999994 45444
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.80 E-value=1e-08 Score=92.82 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=69.8
Q ss_pred CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh---hccc-------ccCCCcEEeC----CC
Q 012545 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQV-------AENKGGIETD----DF 311 (461)
Q Consensus 246 GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~---~~~~-------~~~~g~i~vd----~~ 311 (461)
+..+..++.+..+....+ ...|++.+|+.+++|.++++.......... ...+ ....+...++ +.
T Consensus 224 ~~~i~~~~~v~~i~~~~~--~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~ 301 (347)
T d1b5qa1 224 DPRLQLNKVVREIKYSPG--GVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ 301 (347)
T ss_dssp CTTEESSCCEEEEEECSS--CEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHH
T ss_pred ccccccccccccccccCc--cEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhh
Confidence 567888889999987333 356899999999999999987632111000 0000 0011222222 34
Q ss_pred CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 312 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 312 ~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++++.++||++||+++...+ ..+..|..+|+.||+.|++..
T Consensus 302 ~~~~~~~v~~~GD~~~~~~~--------~~~~gA~~sG~~aA~~l~~~~ 342 (347)
T d1b5qa1 302 LRAPVGRVYFTGEHTSEHYN--------GYVHGAYLSGIDSAEILINCA 342 (347)
T ss_dssp HHCCBTTEEECSGGGCSSCT--------TSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCEEEEEccccCcCC--------CHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999876544 456778899999999988643
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.78 E-value=6.6e-09 Score=91.45 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
++.|||+||||||||++||..+++.|.+ |+|||+++.
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~aa~~G~k---V~vie~~~~ 37 (221)
T d1dxla1 1 SDENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGA 37 (221)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSS
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCC
Confidence 3579999999999999999999999988 999999864
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.76 E-value=1.8e-08 Score=79.65 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=69.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||||+.|+-+|..|++.|.+ |+++++.+... +... .. ......+.+++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~---vt~i~~~~~~l---~~~d---------~~-----------~~~~~~~~l~~ 75 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLK---LIKD---------NE-----------TRAYVLDRMKE 75 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT---TCCS---------HH-----------HHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchh---heEeeccchhh---cccc---------cc-----------hhhhhhhhhhc
Confidence 47999999999999999999998876 99999986421 0000 00 01345678889
Q ss_pred cCcEEEcCCeEEEEeCCCC--E--E---EcCCCcEEecCEEEEccC
Q 012545 85 KGIELILSTEIVRADIASK--T--L---LSATGLIFKYQILVIATG 123 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~--v---~~~~~~~~~~d~liiAtG 123 (461)
.++++++++.+.+++.+.. . + ...+++++++|.+++|+|
T Consensus 76 ~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 76 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred cccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 9999999999999986542 1 1 234556899999999998
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.75 E-value=1.3e-09 Score=96.88 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=60.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
+.+|+|||||||||+||..|++.+. ..+|+|+|+.+... ..+.+.......+. . ........++.+
T Consensus 1 ~~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~g-------G~~~~~~~~~~~~~-~-----~~~~~~~~~~~~ 66 (230)
T d1cjca2 1 TPQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPF-------GLVRFGVAPDHPEV-K-----NVINTFTQTARS 66 (230)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSC-------THHHHTSCTTCGGG-G-----GHHHHHHHHHTS
T ss_pred CCeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCC-------ceehhhcccccccc-c-----cchhhhhhhhhc
Confidence 3689999999999999999998753 34599999997532 11111100000000 0 001123455667
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
.++++..++.+. +.+...+ ..-.||.+++|||+.+
T Consensus 67 ~~~~~~~~~~v~------~~~~~~~-l~~~~d~v~~a~Ga~~ 101 (230)
T d1cjca2 67 DRCAFYGNVEVG------RDVTVQE-LQDAYHAVVLSYGAED 101 (230)
T ss_dssp TTEEEEBSCCBT------TTBCHHH-HHHHSSEEEECCCCCE
T ss_pred CCeeEEeeEEeC------ccccHHH-HHhhhceEEEEeeccc
Confidence 889988876541 1111100 0126999999999875
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.75 E-value=3.8e-09 Score=81.66 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=63.2
Q ss_pred CEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCc
Q 012545 168 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247 (461)
Q Consensus 168 ~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV 247 (461)
.+++...+.+...+ .+|+|+|||+|.+|.++|..|+..+.+++++.+.+..... ..++
T Consensus 17 ~i~Hs~~y~~~~~f-------~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~ 74 (107)
T d2gv8a2 17 SVLHSSLFREPELF-------VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESL 74 (107)
T ss_dssp SEEEGGGCCCGGGG-------TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSE
T ss_pred cEEECCcCcchhhc-------CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccc
Confidence 36665544444333 6899999999999999999999999998877766554321 1123
Q ss_pred EEEcCCcEEEEEecCCCCEEEEEeCCCcEEe-cCEEEEc
Q 012545 248 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVG 285 (461)
Q Consensus 248 ~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~-aD~vi~a 285 (461)
.. ...+.+++. +++ .+.+.||++++ .|.||+|
T Consensus 75 ~~--~~~i~~~~~--~~~--~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 75 QQ--VPEITKFDP--TTR--EIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp EE--ECCEEEEET--TTT--EEEETTTEEECCCSEEEEC
T ss_pred ee--cCCeeEEec--CCC--EEEEcCCCEEeCCCEEEEC
Confidence 22 234667765 343 58899998887 6999987
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.74 E-value=8.1e-09 Score=93.36 Aligned_cols=120 Identities=11% Similarity=0.039 Sum_probs=71.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC-cccc---------cccCCCCCCCCCCceeecC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP-ALSK---------AYLFPEGTARLPGFHVCVG 71 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~ 71 (461)
...+|+||||||+|+++|..|+++|++ |+|+||++... +.+. .++. +............+.....
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 79 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDA 79 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEET
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEec
Confidence 357999999999999999999999987 99999975421 1100 0000 0000000000000100000
Q ss_pred C----------CCCC-CC-----HhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCc
Q 012545 72 S----------GGER-LL-----PEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 72 ~----------~~~~-~~-----~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
. .... .. .......+..+..++++..++.... ++++++|+++.+|.+|.|.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s 152 (265)
T d2voua1 80 LTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 152 (265)
T ss_dssp TTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred cCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence 0 0000 00 1111235678899999999886554 46778999999999999999665
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.72 E-value=2.2e-08 Score=78.63 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=67.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||||+.|+.+|..|++.|.+ |+|+|+.+..- ..+ . . .......+.+++
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~il-------~~~-d----~-----------~~~~~l~~~l~~ 75 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL-------SGF-E----K-----------QMAAIIKKRLKK 75 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------TTS-C----H-----------HHHHHHHHHHHH
T ss_pred CCeEEEECCCccceeeeeeecccccE---EEEEEecceec-------ccc-c----c-----------hhHHHHHHHHHh
Confidence 57999999999999999999999987 99999986421 000 0 0 001345677888
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEc-CCC--cEEecCEEEEc
Q 012545 85 KGIELILSTEIVRADIASKT--LLS-ATG--LIFKYQILVIA 121 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~-~~~--~~~~~d~liiA 121 (461)
.||++++++.+++++..... +.+ .+| +++++|.+++.
T Consensus 76 ~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 76 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred cCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 99999999999999765543 333 233 46899999873
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=2.9e-08 Score=78.42 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+|+++++..+.- ... ......+.+++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~---Vtii~~~~~l~~~-------------D~~-----------~~~~l~~~l~~ 72 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRGF-------------DQD-----------MANKIGEHMEE 72 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSTTS-------------CHH-----------HHHHHHHHHHH
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCe---EEEEEechhhccC-------------CHH-----------HHHHHHHHHHH
Confidence 57899999999999999999999987 9999976321100 000 01345677889
Q ss_pred cCcEEEcCCeEEEEeCCC----C--EEEcC--C-Cc--EEecCEEEEccC
Q 012545 85 KGIELILSTEIVRADIAS----K--TLLSA--T-GL--IFKYQILVIATG 123 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~----~--~v~~~--~-~~--~~~~d~liiAtG 123 (461)
.||+++.++.++++.... . .+... + ++ ...+|.|++|+|
T Consensus 73 ~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 73 HGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp TTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred CCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 999999999888875321 1 23322 2 22 457999999998
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.9e-08 Score=80.05 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||||+.|+.+|..|++.|.+ |+++++.+..- + .+ ... ......+.+++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~~l---~----~~-----d~~-----------~~~~~~~~l~~ 75 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVL---R----SF-----DSM-----------ISTNCTEELEN 75 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC---T----TS-----CHH-----------HHHHHHHHHHH
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcE---EEEEeeccccc---c----ch-----hhH-----------HHHHHHHHHHH
Confidence 47999999999999999999999986 99999986421 0 00 000 12345677889
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EE---cCCC------cEEecCEEEEccC
Q 012545 85 KGIELILSTEIVRADIASKT--LL---SATG------LIFKYQILVIATG 123 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~---~~~~------~~~~~d~liiAtG 123 (461)
.||+++.++.++++...... +. ...| ....+|.+++|+|
T Consensus 76 ~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 76 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp TTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 99999999999999755433 22 2233 2467999999998
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.71 E-value=3.6e-09 Score=95.93 Aligned_cols=36 Identities=14% Similarity=0.434 Sum_probs=33.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+.||+||||||++|+.||..++++|.+ |+++|+.+.
T Consensus 41 k~yDvvVIGgG~aG~~aA~~~a~~G~k---v~vve~~~~ 76 (261)
T d1mo9a1 41 REYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPF 76 (261)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSS
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCc
Confidence 579999999999999999999999987 999999865
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.71 E-value=9.1e-08 Score=71.90 Aligned_cols=89 Identities=20% Similarity=0.341 Sum_probs=71.6
Q ss_pred cCCCCCCeEEEecCCcceEEccCCCCcE-EEecCCccccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCC
Q 012545 366 TGYDYLPYFYSRAFDLSWQFYGDNVGDT-VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSV 444 (461)
Q Consensus 366 ~~~~~~p~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~ 444 (461)
.+|..+|||||..++..++.+|...+.. +...+.. .+...|..+|+++|+++|+..++ .+.++..+..+|+.+.++
T Consensus 3 ~~y~~vP~FWSdQ~d~~iq~~G~~~~~~~~v~~~~~--~~~~~f~~~y~~~g~lvgv~~vn-~~~~~~~~rrli~~~~~~ 79 (97)
T d1d7ya3 3 PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVS--LDAPKFTLIELQKGRIVGATCVN-NARDFAPLRRLLAVGAKP 79 (97)
T ss_dssp CCCCCCCEEEEEETTEEEEEEECSCCSEEEEEEECC--SSSCEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCcEEeccCCCeeEEEecCCCCCEEEEeccC--CCCCeEEEEEEeCCEEEEEEEeC-CHHHHHHHHHHHHCCCCC
Confidence 5799999999999999999999876532 2222111 11456888899999999999997 688899999999999988
Q ss_pred CChhhhhccCCCcc
Q 012545 445 ESLDVLKNEGLSFA 458 (461)
Q Consensus 445 ~~~~~l~~~~~~~~ 458 (461)
+.+.|.|+++++-
T Consensus 80 -~~~~LaD~~~~Lk 92 (97)
T d1d7ya3 80 -DRAALADPATDLR 92 (97)
T ss_dssp -CHHHHHSSCCHHH
T ss_pred -CHHHhcCCCCCHH
Confidence 7899999998763
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.69 E-value=2.7e-08 Score=81.85 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 267 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~ 267 (461)
.+++|+|||||.+|+|+|..+.++|.+ |+++.|.+..-.. ... .....+...+++++.+..++++.. .++...
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~----~~~~~a~~~~~~~~~~~~~~ei~~-~~~~~~ 117 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVP----EEVELAKEEKCEFLPFLSPRKVIV-KGGRIV 117 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCH----HHHHHHHHTTCEEECSEEEEEEEE-ETTEEE
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cch----hheeecccccceeEeccccEEEEe-cCCceE
Confidence 457899999999999999999999865 8899887754322 122 222344567899999988888876 344433
Q ss_pred EEEe------CCC---------cEEecCEEEEccC
Q 012545 268 EVKL------KDG---------RTLEADIVVVGVG 287 (461)
Q Consensus 268 ~v~~------~~G---------~~i~aD~vi~a~G 287 (461)
.+.. ++| .+++||.||+|+|
T Consensus 118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG 152 (153)
T d1gtea3 118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 152 (153)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcC
Confidence 3332 222 3689999999998
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.69 E-value=7e-09 Score=92.28 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=32.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.|||+||||||||++||..+++.|++ |+|+|+.+.
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~k---V~viE~~~~ 37 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKK---VMVLDFVTP 37 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCC---EEEECCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCC
Confidence 68999999999999999999999998 999998765
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.68 E-value=2.6e-08 Score=79.03 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=69.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+-+|..+++.|.+ |+++|+.+..- .. + ... ......+.+++
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~---Vtive~~~~il-------~~-~----d~~-----------~~~~l~~~l~~ 79 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLM-------QG-A----DRD-----------LVKVWQKQNEY 79 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------TT-S----CHH-----------HHHHHHHHHGG
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCE---EEEEEeecccc-------cc-c----hhh-----------HHHHHHHHHHH
Confidence 57999999999999999999999987 99999986421 00 0 000 01345677788
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEc--CCC--cEEecCEEEEccC
Q 012545 85 KGIELILSTEIVRADIASKT--LLS--ATG--LIFKYQILVIATG 123 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~--~~~--~~~~~d~liiAtG 123 (461)
.|++++.++++.++...... +.+ .++ +++++|.+++|+|
T Consensus 80 ~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 80 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred cCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 99999999999999755543 433 222 4699999999998
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=2.2e-08 Score=93.03 Aligned_cols=41 Identities=27% Similarity=0.209 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|-...+||+|||+|+|||+||.++++++. ..+|+|+||...
T Consensus 1 m~~~~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~~~ 41 (311)
T d1kf6a2 1 MQTFQADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVYP 41 (311)
T ss_dssp CEEEECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSCG
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECCCC
Confidence 33457999999999999999999999742 334999999753
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=4.4e-08 Score=77.38 Aligned_cols=92 Identities=15% Similarity=0.316 Sum_probs=67.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++++|||||+.|+.+|..|+++|.+ |+|+++.+..- | . +. .. ......+.++
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~---Vtii~~~~~~l---~----~-~d----~e-----------i~~~l~~~l~ 75 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIG---A----S-MD----GE-----------VAKATQKFLK 75 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---S----S-SC----HH-----------HHHHHHHHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHhhCcc---eeEEEeccccc---h----h-hh----hh-----------hHHHHHHHHH
Confidence 357999999999999999999999987 99999986421 0 0 00 00 0134567788
Q ss_pred HcCcEEEcCCeEEEEeCCC--CEE--EcCC-----CcEEecCEEEEc
Q 012545 84 EKGIELILSTEIVRADIAS--KTL--LSAT-----GLIFKYQILVIA 121 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~--~~v--~~~~-----~~~~~~d~liiA 121 (461)
+.||++++++.+.++.... ..+ .+.+ ++++++|.+++|
T Consensus 76 ~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 76 KQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp HTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred hccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 8999999999999987533 333 3322 247899999987
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=9.7e-09 Score=91.97 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCC-CCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
...+.+.+.+.+++.|++++++++|++|..+++ +++..| +.+|+++.||.||+...+-|+
T Consensus 235 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~~ 295 (297)
T d2bcgg1 235 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFPE 295 (297)
T ss_dssp TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhccC
Confidence 455788889999999999999999999976444 445444 567889999999986555553
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.65 E-value=1.5e-07 Score=71.42 Aligned_cols=87 Identities=16% Similarity=0.350 Sum_probs=71.7
Q ss_pred cCCCCCCeEEEecCCcceEEccCCCCc--EEEecCCccccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCC
Q 012545 366 TGYDYLPYFYSRAFDLSWQFYGDNVGD--TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPS 443 (461)
Q Consensus 366 ~~~~~~p~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~ 443 (461)
..++.+||||+..|+..++.+|...+. .+..++.. ..+|..+|+++|+++|+..++ .+.++..+..+|..+.+
T Consensus 2 p~~~~vP~FWSdQ~d~~lQ~~G~~~~~d~~v~rg~~~----~~~f~~~y~~~~~lvav~~vn-~~~~~~~~r~li~~~~~ 76 (103)
T d1q1ra3 2 PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAVDTVN-RPVEFNQSKQIITDRLP 76 (103)
T ss_dssp CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETT----TTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCcEeeecCCCeeEEEECCCCCceEEEecCCC----CCeEEEEEEeCCeEEEEEEeC-CHHHHHHHHHHHHCCCC
Confidence 356789999999999999999976643 34444433 567888899999999999997 67889999999999988
Q ss_pred CCChhhhhccCCCcc
Q 012545 444 VESLDVLKNEGLSFA 458 (461)
Q Consensus 444 ~~~~~~l~~~~~~~~ 458 (461)
+ +.+.|.|+++++-
T Consensus 77 ~-~~~~L~D~~~~Lk 90 (103)
T d1q1ra3 77 V-EPNLLGDESVPLK 90 (103)
T ss_dssp C-CHHHHTCTTSCHH
T ss_pred c-CHHHhcCCCCCHH
Confidence 8 7899999998863
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.8e-08 Score=78.61 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=68.3
Q ss_pred CCCCCeEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE- 430 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~- 430 (461)
|+.+|+.+++.++++.++..+.+ +..+ .+...... ..+++|+|+++ ++++|||++++|++++|
T Consensus 1 Y~~vP~~vft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~El 80 (115)
T d3grsa3 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEM 80 (115)
T ss_dssp CTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCEEecCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHHHH
Confidence 56799999999988777443221 1212 12222211 34567888877 58999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 431 NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
++.++.+|.++.+++|+..+.-+.+++++.
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~ 110 (115)
T d3grsa3 81 LQGFAVAVKMGATKADFDNTVAIHPTSSEE 110 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred HHHHHHHHHcCCCHHHHhhCccCCCCHHHH
Confidence 689999999999999988888887777664
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=1.3e-08 Score=80.50 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCCCCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE- 430 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~- 430 (461)
|+.+|+.+++.++++.+ |.++ |..+.. ...... ....+|.|+++ ++|+|||++++|++++|
T Consensus 1 Y~~iP~~vft~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~el 78 (123)
T d1v59a3 1 YNNIPSVMYSHPEVAWV--GKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEM 78 (123)
T ss_dssp TTSCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred CCCCCEEeecCCccEEE--ECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHH
Confidence 56789998888887766 5443 222222 111111 34678999887 57999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 431 NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.++.+|++++|++|+..+.-+.+++++
T Consensus 79 I~~~alai~~~~t~~~l~~~i~~hPT~sE 107 (123)
T d1v59a3 79 IAEAGLALEYGASAEDVARVCHAHPTLSE 107 (123)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCTTCTTH
T ss_pred HHHHHHHHHcCCcHHHHHhcccCCCcHHH
Confidence 68999999999999988777666666653
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.57 E-value=8.4e-08 Score=75.86 Aligned_cols=92 Identities=16% Similarity=0.333 Sum_probs=68.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+-+|..+++.|.+ |+|+++.+..- +... .. ....+.+.+++
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~---Vtvi~~~~~~l---~~~d---------~~-----------~~~~l~~~l~~ 78 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIV---PTMD---------AE-----------IRKQFQRSLEK 78 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---TTSC---------HH-----------HHHHHHHHHHH
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCe---EEEEEEccccC---chhh---------hc-----------chhhhhhhhhc
Confidence 57999999999999999999999987 99999986521 0000 00 01345678889
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEc--C-CC--cEEecCEEEEcc
Q 012545 85 KGIELILSTEIVRADIASKT--LLS--A-TG--LIFKYQILVIAT 122 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~--~-~~--~~~~~d~liiAt 122 (461)
.||++++++.+.+++..+.. +.+ . ++ +++.+|.+++|.
T Consensus 79 ~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 79 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred ccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 99999999999999865432 322 2 33 358999999884
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.55 E-value=3.9e-07 Score=85.33 Aligned_cols=97 Identities=21% Similarity=0.105 Sum_probs=72.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCc---------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR--------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~--------------------------------------- 228 (461)
-|+|+|||+|++|+-+|..|.+.+ .+|+++++.+.+...
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y 83 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 83 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence 479999999999999999998766 599999999764200
Q ss_pred ------------------------cc--CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC---c---E
Q 012545 229 ------------------------LF--TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---R---T 276 (461)
Q Consensus 229 ------------------------~~--~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G---~---~ 276 (461)
.+ ..++.+.+....+..+..++++++|++++.. +++ ..|++.++ + +
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~-~~~-w~Vt~~~~~~~~~~~~ 161 (335)
T d2gv8a1 84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGS-WVVTYKGTKAGSPISK 161 (335)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTE-EEEEEEESSTTCCEEE
T ss_pred hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEec-CCE-EEEEEEecCCCCeEEE
Confidence 00 1355667777777788899999999999984 333 34554332 2 4
Q ss_pred EecCEEEEccCC
Q 012545 277 LEADIVVVGVGG 288 (461)
Q Consensus 277 i~aD~vi~a~G~ 288 (461)
..+|.||+|+|.
T Consensus 162 ~~~d~VI~AtG~ 173 (335)
T d2gv8a1 162 DIFDAVSICNGH 173 (335)
T ss_dssp EEESEEEECCCS
T ss_pred EEeeEEEEcccc
Confidence 679999999995
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.54 E-value=3.2e-08 Score=78.11 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=66.1
Q ss_pred CCCCCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE- 430 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~- 430 (461)
|+.+|+.+++.++++.+ |.++ |..+.. ...... ....+|.|+++ ++|+|+|++++|++++|
T Consensus 1 Y~~iP~~vft~PeiA~v--Glte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~el 78 (123)
T d1dxla3 1 YDKVPGVVYTNPEVASV--GKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGEL 78 (123)
T ss_dssp TTSCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred CCCCCEEeecCCceEEE--ECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHH
Confidence 56789988888877666 5443 322222 121111 35678999887 46999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 431 NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.++.+|+++++++|+..+.-+.+++++
T Consensus 79 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE 107 (123)
T d1dxla3 79 IHEAAIALQYDASSEDIARVCHAHPTMSE 107 (123)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCTTH
T ss_pred HHHHHHHHHcCCcHHHHhhCCCCCCCHHH
Confidence 69999999999999998877777666654
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=3.4e-08 Score=76.99 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=66.2
Q ss_pred CCCCCeEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE- 430 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~- 430 (461)
|+.+|+.+++.++++.++....+ +..+. +.....+ ..+.+|.|+++ ++++|||++++|++++|
T Consensus 1 Y~~vP~~vft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~El 80 (115)
T d1gesa3 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEM 80 (115)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCeEecCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHHHH
Confidence 67799999998987777433211 11222 2221111 23457888777 58999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 431 NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
++.++.+|.++.+++++..+.-+.+++++.
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~ 110 (115)
T d1gesa3 81 LQGFAVALKMGATKKDFDNTVAIHPTAAEE 110 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred HHHHHHHHHcCCcHHHHhcCcccCCcHHHH
Confidence 689999999999998888777777777654
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.52 E-value=1.3e-07 Score=83.19 Aligned_cols=125 Identities=14% Similarity=0.201 Sum_probs=82.5
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHH---H----hcCCCcEEEECCCHHHHHHHHHHHHC--------------------C
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAI---K----AKKNGKAVVVGGGYIGLELSAALKIN--------------------N 213 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l---~----~~~~~~v~VvG~G~~g~e~a~~l~~~--------------------g 213 (461)
+||.+.++|+...++. ...... . ...+++|+|||+|++|+++|..+.+. |
T Consensus 6 IPGedl~gV~~A~dfl---~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g 82 (225)
T d1cjca1 6 IPGEELPGVFSARAFV---GWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSR 82 (225)
T ss_dssp CTTTTSTTEEEHHHHH---HHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCC
T ss_pred CCCCCCCCcEeHHHHH---HHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccC
Confidence 8999999999765443 221110 0 11478999999999999999999873 4
Q ss_pred -CcEEEEccCCccCCcccCHHHHH-----------------------------------HHHHHHH--------------
Q 012545 214 -IDVSMVYPEPWCMPRLFTADIAA-----------------------------------FYEGYYA-------------- 243 (461)
Q Consensus 214 -~~Vtli~~~~~~~~~~~~~~~~~-----------------------------------~~~~~l~-------------- 243 (461)
.+|+++.|....-.....+++.+ .+.+.++
T Consensus 83 ~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (225)
T d1cjca1 83 VKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASA 162 (225)
T ss_dssp CCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTC
T ss_pred CCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccccc
Confidence 57999998875433322223221 1111221
Q ss_pred hcCcEEEcCCcEEEEEecCCC-CEEEEEeC---------------CC--cEEecCEEEEccCC
Q 012545 244 NKGIKIIKGTVAVGFTTNADG-EVKEVKLK---------------DG--RTLEADIVVVGVGG 288 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~---------------~G--~~i~aD~vi~a~G~ 288 (461)
..++.+++.....++..++++ ++..+++. .| .+++||+||.|+|+
T Consensus 163 ~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 163 SRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp SEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred ccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 246889999999999885554 56555442 12 35899999999995
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.52 E-value=3.7e-08 Score=88.55 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=35.3
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
||+..+||||||||++|+++|++|+++|++ |+|+|++..
T Consensus 2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~---V~vier~~~ 40 (268)
T d1c0pa1 2 MMHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARDLP 40 (268)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCT
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 566688999999999999999999999987 999999853
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.51 E-value=4.7e-09 Score=92.50 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||+|||||||||++||..+++.|.+ |+|||+...
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~k---V~vIEk~~~ 37 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNL 37 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCE---EEEEecCCC
Confidence 69999999999999999999999987 999999864
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.50 E-value=2.7e-08 Score=78.70 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=64.4
Q ss_pred CCCCCeEEEecCCcceEEccCCC------CcEEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEE- 430 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~- 430 (461)
|+.+|+.+++.++++.+ |.++ |..+.....+ .. ....+|.|+++ ++|+|||++++|++++|
T Consensus 1 Y~~vP~~vft~PeiA~V--Glte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~el 78 (124)
T d3lada3 1 YDLIPAVIYTHPEIAGV--GKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAEL 78 (124)
T ss_dssp TTCCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred CCcCCeEecCcCceeEe--ehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHH
Confidence 56789998888887666 5442 2222221111 11 34678999887 57999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCcc
Q 012545 431 NKAIAKVARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
++.++.+|+++++++|+..+.-+.+++.
T Consensus 79 I~~~~~ai~~~~t~~~l~~~i~~hPT~s 106 (124)
T d3lada3 79 VQQGAIAMEFGTSAEDLGMMVFAHPALS 106 (124)
T ss_dssp HHHHHHHHHHTCBHHHHHTSCCCSSCSH
T ss_pred HHHHHHHHHcCCCHHHHHhCCccCCCHH
Confidence 6899999999999988777666666554
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=2.8e-08 Score=88.02 Aligned_cols=38 Identities=34% Similarity=0.407 Sum_probs=35.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|+++|||+||||||||++||..|++.|.+ |+|||+.+.
T Consensus 2 m~~~yDviVIG~GpAGl~aA~~aa~~G~k---V~lie~~~~ 39 (233)
T d1v59a1 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRGK 39 (233)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSS
T ss_pred CCcccCEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCC
Confidence 66789999999999999999999999988 999998754
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.48 E-value=8.1e-08 Score=75.35 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=65.0
Q ss_pred CCCCCeEEEecCCcceEEccCCC----C----cEEE---ecCCccc-------cCCCcEEEEEE--eCCEEEEEEEecCC
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV----G----DTVL---FGDNDLA-------SATHKFGTYWI--KDGKVVGVFLESGT 427 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~----~----~~~~---~~~~~~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~ 427 (461)
|+.+|+++++.++++.++..+.+ + ..+. +...... ....+|.++++ ++|+|||++++|++
T Consensus 1 Y~~vP~~vfT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG~~ 80 (119)
T d1onfa3 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLN 80 (119)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCcCCeEeccCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeCCC
Confidence 67799999999988777433211 1 1111 1111111 23457777776 68999999999999
Q ss_pred HHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 428 PEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 428 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++| ++.++.+|+++++++++..+.-+.+++++
T Consensus 81 A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE 113 (119)
T d1onfa3 81 ADEIVQGFAVALKMNATKKDFDETIPIHPTAAE 113 (119)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTT
T ss_pred HHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHH
Confidence 999 68999999999999888777777777665
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.44 E-value=1.3e-07 Score=74.92 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=65.0
Q ss_pred CCCCCeEEEecCCcceEEccCCC----CcEEEec-----CCccc----cCCCcEEEEEE--eCCEEEEEEEecCCHHH-H
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV----GDTVLFG-----DNDLA----SATHKFGTYWI--KDGKVVGVFLESGTPEE-N 431 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~----~~~~~~~-----~~~~~----~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~ 431 (461)
|..+|+.+++.++++.+++.+.+ |..+... ..... .....++++++ ++|+|||++++|++++| +
T Consensus 1 y~~VP~aVfT~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~ElI 80 (128)
T d1feca3 1 HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEII 80 (128)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHH
T ss_pred CCCCCEEecCCCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHHHH
Confidence 56789999998988877443221 3222221 11111 12334677766 58999999999999999 6
Q ss_pred HHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 432 KAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
+.++.+|.+++++.|+..+.-+.+++++.
T Consensus 81 ~~~~~ai~~~~t~~~l~~~i~~hPT~sE~ 109 (128)
T d1feca3 81 QSVAICLKMGAKISDFYNTIGVHPTSAEE 109 (128)
T ss_dssp HHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred HHHHHHHHcCCcHHHHhcCcCCCCcHHHH
Confidence 89999999999998877777777777653
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.43 E-value=8.4e-08 Score=76.14 Aligned_cols=90 Identities=7% Similarity=0.087 Sum_probs=64.8
Q ss_pred CCCeEEEecCCcceEEccCCC----CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHH
Q 012545 370 YLPYFYSRAFDLSWQFYGDNV----GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAI 434 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~~----~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~ 434 (461)
.+|+++++.++++.++..+.+ |..+.. ...... .++.+|.|+++ ++|+|||+|++|++++| ++.+
T Consensus 3 ~IP~~vft~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~~ 82 (128)
T d1ojta3 3 VIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEV 82 (128)
T ss_dssp CCCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHH
T ss_pred cCCEeecCCCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHHHHH
Confidence 579988888887777433221 222222 221111 35678999887 47999999999999999 6899
Q ss_pred HHHHHcCCCCCChhhhhccCCCccc
Q 012545 435 AKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.+|+++++++|+..+.-+.+++.+
T Consensus 83 ~lai~~~~t~~~l~~~i~~hPT~sE 107 (128)
T d1ojta3 83 CLAIEMGCDAADIGKTIHPHPTLGE 107 (128)
T ss_dssp HHHHHTTCBHHHHHTSCCCSSSSTT
T ss_pred HHHHHcCCCHHHHhhCcCcCCCHHH
Confidence 9999999999988877777777654
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.39 E-value=1.6e-07 Score=73.06 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=63.2
Q ss_pred CCeEEEecCCcceEEccCCC----CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHH
Q 012545 371 LPYFYSRAFDLSWQFYGDNV----GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIA 435 (461)
Q Consensus 371 ~p~~~~~~~~~~~~~~g~~~----~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~ 435 (461)
+|+.+++.++++.++..+.+ |..+.. .+.... ....+|.|+.+ ++++|||++++|++++| ++.++
T Consensus 2 vP~~vft~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~~~ 81 (115)
T d1ebda3 2 IPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELG 81 (115)
T ss_dssp CCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHH
T ss_pred cCeEecCCCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHHHH
Confidence 68888888887766433221 322222 221111 34678999887 47999999999999999 68999
Q ss_pred HHHHcCCCCCChhhhhccCCCccc
Q 012545 436 KVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.+|+++++++|+..+.-+.+++++
T Consensus 82 ~ai~~~~t~~~l~~~i~~hPT~sE 105 (115)
T d1ebda3 82 LAIEAGMTAEDIALTIHAHPTLGE 105 (115)
T ss_dssp HHHHHTCBHHHHHHSCCCTTSSTH
T ss_pred HHHHcCCCHHHHhhCCCCCCCHHH
Confidence 999999999988777666666553
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.39 E-value=2.1e-07 Score=82.23 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.+|+|+|||+|.+|+++|..++..+.+++++.+.+.
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 66 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence 689999999999999999999999999888766643
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=1.4e-07 Score=88.25 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=33.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+.+||+|||+|+|||+||.+++++|.+ |+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~---V~lleK~~~ 41 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSGQT---CALLSKVFP 41 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcCCe---EEEEeCCCC
Confidence 468999999999999999999999987 999999754
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.37 E-value=7.7e-08 Score=75.22 Aligned_cols=90 Identities=14% Similarity=0.017 Sum_probs=63.7
Q ss_pred CCCeEEEecCCcceEEccCC----CCcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHH
Q 012545 370 YLPYFYSRAFDLSWQFYGDN----VGDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAI 434 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~----~~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~ 434 (461)
.+|+.+++.++++.+++.+. .|..+.. ...... ....+|.|+++ ++|+|||++++|++++| ++.+
T Consensus 3 ~iP~~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~~~ 82 (118)
T d1xdia2 3 TVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPI 82 (118)
T ss_dssp GCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHH
T ss_pred CCCEEecCCChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHHHHH
Confidence 47888888887776643321 1322222 222211 34678999888 46899999999999999 6899
Q ss_pred HHHHHcCCCCCChhhhhccCCCccc
Q 012545 435 AKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.+|+++++++|+..+.-+.+++.+
T Consensus 83 ~~ai~~~~t~~~l~~~i~~hPT~sE 107 (118)
T d1xdia2 83 AVAVQNRITVNELAQTLAVYPSLSG 107 (118)
T ss_dssp HHHHHHTCBHHHHHTSBCCSSSTHH
T ss_pred HHHHHcCCCHHHHhhCCCCCCCHHH
Confidence 9999999999988777666666654
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.35 E-value=1e-07 Score=75.17 Aligned_cols=91 Identities=9% Similarity=-0.016 Sum_probs=64.0
Q ss_pred CCCCeEEEecCCcceEEccCCC----CcEEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 369 DYLPYFYSRAFDLSWQFYGDNV----GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 369 ~~~p~~~~~~~~~~~~~~g~~~----~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
..+|+++++.++++.+++.+.+ |..+.....+ .. ..+.+|.|+++ ++|+|||++++|++++| ++.
T Consensus 2 ~~iP~vvft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~~ 81 (123)
T d1lvla3 2 AAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTA 81 (123)
T ss_dssp SCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHH
T ss_pred CCCCEEEeCCCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHHH
Confidence 3578888888887776433221 3323222221 11 34567888877 46999999999999988 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCccc
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+|+++++++|+..+.-+.+++.+
T Consensus 82 ~~lai~~~~t~~~l~~~i~~hPT~sE 107 (123)
T d1lvla3 82 FAQSLEMGACLEDVAGTIHAHPTLGE 107 (123)
T ss_dssp HHHHHHHTCBHHHHHTSCCCTTCTTH
T ss_pred HHHHHHcCCCHHHHhcCCCCCCCHHH
Confidence 99999999999887776666666543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.34 E-value=2.9e-06 Score=75.96 Aligned_cols=103 Identities=20% Similarity=0.357 Sum_probs=76.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----cCHHHHH---------------------------
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FTADIAA--------------------------- 236 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-----~~~~~~~--------------------------- 236 (461)
..++|+|||+|+.|+-+|..|++.|.+|+++++.+...... +.+...+
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 82 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence 36799999999999999999999999999999876543210 1121111
Q ss_pred -----------------HH-HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 237 -----------------FY-EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 237 -----------------~~-~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.+ ...-...++.++++++++++...+++ ..++++||+++.+|.+|.|.|......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~~r 155 (265)
T d2voua1 83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVVR 155 (265)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHHH
T ss_pred ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccccc
Confidence 11 11122346889999999999984444 578999999999999999999776543
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.34 E-value=5.4e-07 Score=81.94 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=32.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-cCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~-~g~~~~~V~vie~~~~~ 43 (461)
..+||+||||||+||+||.+|++ .|++ |+|+|+++..
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~---V~vlE~~~~~ 69 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSP 69 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSSC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCe---EEEEecCCCC
Confidence 36899999999999999999987 4887 9999998753
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.32 E-value=1.9e-06 Score=77.84 Aligned_cols=54 Identities=26% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+.+.+.++++|++++.+++|++|+. ++....|++++| ++.||.||+|+|....
T Consensus 154 ~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g-~i~a~~vV~AaG~~s~ 207 (276)
T d1ryia1 154 CKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSG-DVWANHVVVASGVWSG 207 (276)
T ss_dssp HHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTE-EEEEEEEEECCGGGTH
T ss_pred hhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCCe-EEEcCEEEECCCccHH
Confidence 44566777889999999999999987 455578999888 7999999999996543
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.29 E-value=3.4e-06 Score=73.25 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=69.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-c------------CCcc----cC------HHHHHHHHHHHH-hcCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-C------------MPRL----FT------ADIAAFYEGYYA-NKGI 247 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~------------~~~~----~~------~~~~~~~~~~l~-~~GV 247 (461)
.|+|||+|+.|+|+|...++.|.++.+|+.+.. + .+.. .+ ......+.+.+. ..++
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL 83 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL 83 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence 589999999999999999999999999976421 0 0000 00 112333444443 3478
Q ss_pred EEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 248 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 248 ~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.++.. +|+++.. +++++..|++.+|.++.|..||++||.
T Consensus 84 ~i~q~-~V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGT 122 (230)
T d2cula1 84 HLFQA-TATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS 122 (230)
T ss_dssp EEEEC-CEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred HHHhc-cceeeEe-cccceeeEEeccccEEEEeEEEEccCc
Confidence 88755 5677665 477888999999999999999999996
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.27 E-value=3.1e-07 Score=82.57 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=32.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
.||+|||||+|||+||..|+++|+++ |+|+|+++..
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~--V~vlE~~~~~ 36 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITD--LLILEATDHI 36 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCC--EEEECSSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCc--EEEEECCCCC
Confidence 48999999999999999999999643 9999998753
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.26 E-value=5.4e-07 Score=81.64 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||+|||||+|||++|..|+++|..+ |+|+|+.+.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~--V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGK--VTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSE--EEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCe--EEEEeCCCC
Confidence 69999999999999999999999632 999999875
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.26 E-value=5.3e-07 Score=71.94 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCCCeEEEecCCcceEEccCCC-----C-cEEE---ecCCc--cc----cCCCcEEEEEE---eCCEEEEEEEecCCHH
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV-----G-DTVL---FGDND--LA----SATHKFGTYWI---KDGKVVGVFLESGTPE 429 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~-----~-~~~~---~~~~~--~~----~~~~~~~~~~~---~~~~i~G~~~~g~~~~ 429 (461)
|+.+|+.+++.++++.++..+.+ + +.+. ..... .. .....+.+.++ ++++|||+|++|++++
T Consensus 1 Y~~VP~~vfT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~A~ 80 (133)
T d1h6va3 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAG 80 (133)
T ss_dssp CSSCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTTHH
T ss_pred CCCCCEEecCcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCCHH
Confidence 67899999999988777433211 1 1111 11111 00 12334444333 4799999999999999
Q ss_pred H-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 430 E-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 430 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
| ++.++.+|.+++++.|+..+.-+.+++++.
T Consensus 81 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~ 112 (133)
T d1h6va3 81 EVTQGFAAALKCGLTKQQLDSTIGIHPVCAEI 112 (133)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHhhccccCCCHHHH
Confidence 9 689999999999999988887777777653
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.25 E-value=3.2e-07 Score=80.91 Aligned_cols=35 Identities=34% Similarity=0.523 Sum_probs=32.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.|||+|||||||||+||..|++.|++ |+|||+.+.
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G~~---V~viE~~~~ 40 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKT 40 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSC
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCC
Confidence 59999999999999999999999987 999999864
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.21 E-value=4e-07 Score=83.69 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=32.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
++|+|||||+|||+||.+|++.|++ |+|+|+++..
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~---V~vlE~~~~~ 36 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEGKA 36 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC---EEEEeCCCCC
Confidence 6899999999999999999999987 9999998764
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=4.9e-07 Score=84.52 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=34.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
.++.||||||||+|||+||.+|+++|++ |+|+|+++...
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~---V~VlEa~~r~G 41 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDRVG 41 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSSSSB
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCc
Confidence 3578999999999999999999999987 99999997643
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.19 E-value=6.7e-07 Score=76.49 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=32.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.++|+||||||+||+||.+|+++|+++ |+|+|+.+.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~--V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSD--ITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCC--EEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCe--EEEEEecCc
Confidence 579999999999999999999999854 999999875
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=5.2e-07 Score=82.93 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=33.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
++||||||||++|++||..|++.|++ |+|+|+.+..+
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~---V~iiEk~~~iG 37 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKK---VLVIEKRNHIG 37 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCC---EEEECSSSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCc---EEEEECCCCcc
Confidence 37999999999999999999999987 99999997643
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.17 E-value=5.4e-07 Score=83.89 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=33.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
+.++|+|||||++||+||..|+++|++ |+|+|+++..
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~---V~vlE~~~~~ 65 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASERP 65 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCC
Confidence 457999999999999999999999987 9999998753
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.13 E-value=1.4e-06 Score=75.90 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=43.9
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHH----hcCCCcEEEECCCHHHHHHHHHHH--------------------HCC-Cc
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIK----AKKNGKAVVVGGGYIGLELSAALK--------------------INN-ID 215 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~----~~~~~~v~VvG~G~~g~e~a~~l~--------------------~~g-~~ 215 (461)
+||.+.++|+...++.....-..... ...+++|+|||+|++|+++|..+. +.| .+
T Consensus 6 IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~ 85 (216)
T d1lqta1 6 IPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQE 85 (216)
T ss_dssp CTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCE
T ss_pred CCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCce
Confidence 89999999997654432110000000 114789999999999999998876 445 46
Q ss_pred EEEEccCCcc
Q 012545 216 VSMVYPEPWC 225 (461)
Q Consensus 216 Vtli~~~~~~ 225 (461)
|+++.|....
T Consensus 86 V~iv~RRg~~ 95 (216)
T d1lqta1 86 VVIVGRRGPL 95 (216)
T ss_dssp EEEECSSCGG
T ss_pred EEEEEECChH
Confidence 9999887543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.11 E-value=5.7e-06 Score=73.13 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 226 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 226 (461)
.|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G 41 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence 58999999999999999999999999999988654
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=98.11 E-value=7.8e-07 Score=84.21 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=34.8
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|..+|||||||+|+||+.+|.+|++.|++ |+|+|++..
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~k---VlvLEaG~~ 38 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYK---VAMFDIGEI 38 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCC
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCCe---EEEEecCCC
Confidence 55689999999999999999999999987 999999864
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.09 E-value=1.2e-06 Score=70.66 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhh--ccCCCcc
Q 012545 404 ATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLK--NEGLSFA 458 (461)
Q Consensus 404 ~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~--~~~~~~~ 458 (461)
...+|+|+++ ++|+|||++++|++++| ++.++.+|+++++++|+..+. -+.++|+
T Consensus 65 ~~~G~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~ 124 (140)
T d1mo9a3 65 HMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHF 124 (140)
T ss_dssp GGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCH
T ss_pred CCCceEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChH
Confidence 3567999888 68999999999999988 689999999999998877663 3445554
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.05 E-value=1.4e-06 Score=80.54 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=34.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
++++|+|||||++||+||..|++.|++ |+|+|+++..+
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~---V~viEk~~~iG 38 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRDHIG 38 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCC---EEEEECCCCCc
Confidence 367999999999999999999998876 99999998644
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.05 E-value=1.5e-06 Score=79.19 Aligned_cols=85 Identities=13% Similarity=0.134 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe-CCCc--EEecCEEEEccCCCCChhhhhcccccCCCcEEe
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLISLFKGQVAENKGGIET 308 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~G~--~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~v 308 (461)
..+.+.+.+.+++.+..++...........+++.+ .|++ .+|+ ++.||+||-|-|.+....-. +..
T Consensus 103 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~g~~~~i~a~~vVgADG~~S~vR~~---i~~------- 171 (292)
T d1k0ia1 103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGFHGISRQS---IPA------- 171 (292)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCTTCSTGGG---SCG-------
T ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCce-EEEEecCCcEEEEEeCEEEECCCCCCcccce---eee-------
Confidence 44666777788888888887777666655334443 3443 5554 57899999999977544311 110
Q ss_pred CCCCCCCCCCEEEeCcccccCc
Q 012545 309 DDFFKTSADDVYAVGDVATFPM 330 (461)
Q Consensus 309 d~~~~t~~~~vya~GD~~~~~~ 330 (461)
........+.+||++....
T Consensus 172 ---~~~~~~~~~~~~~~~~~~~ 190 (292)
T d1k0ia1 172 ---ERMQHGRLFLAGDAAHIVP 190 (292)
T ss_dssp ---GGSEETTEEECGGGTEECC
T ss_pred ---ccccccccccceeeeeecC
Confidence 0112456778888876544
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.02 E-value=2.3e-05 Score=70.37 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=96.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCccCCcc----cCHHH-------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRL----FTADI------------------------------- 234 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~~----~~~~~------------------------------- 234 (461)
-+|+|||+|+.|+-+|..|++.|. +|+++++.+.+.... +.+..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 81 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence 479999999999999999999995 899999987643210 11110
Q ss_pred -------------------------HHHH--HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC----cEEecCEEE
Q 012545 235 -------------------------AAFY--EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVV 283 (461)
Q Consensus 235 -------------------------~~~~--~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G----~~i~aD~vi 283 (461)
.... .......++.+..+++++.+...+++ ..+.+.+| +++.+|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~~~ad~vi 159 (288)
T d3c96a1 82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR--VLIGARDGHGKPQALGADVLV 159 (288)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE--EEEEEEETTSCEEEEEESEEE
T ss_pred EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc--EEEEEEcCCCCeEEEeeceee
Confidence 1111 11223457888889999988874444 35666555 479999999
Q ss_pred EccCCCCChhhhhcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 284 VGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 284 ~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
.|-|.+..+.-...... ..............+..+||++....+..+ .-...|...+...+..+.
T Consensus 160 ~ADG~~S~vr~~~~~~~----~~~~~~~~~~~~~~~~~~gda~h~~~p~~g-----~G~~~ai~d~~~l~~~l~ 224 (288)
T d3c96a1 160 GADGIHSAVRAHLHPDQ----RPLRDPLPHWGRGRITLLGDAAHLMYPMGA-----NGASQAILDGIELAAALA 224 (288)
T ss_dssp ECCCTTCHHHHHHCTTC----CCCCCCCSCCCBTTEEECTHHHHCCCSSTT-----CTHHHHHHHHHHHHHHHH
T ss_pred ccCCccceeeeeecccc----ccccccccccccCcceecccccceeCCccc-----cchhhhhhhHHHHHHHHh
Confidence 99997754432211000 000011122356689999999986654333 224455555665555543
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.99 E-value=1e-05 Score=66.31 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=65.9
Q ss_pred CeEEEE--cCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 6 FKYVIL--GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 6 ~dvvII--G~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++|+ |||+.|+.+|..|+++|.+ |+|+++.+.... .+ ... ........+.
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~---Vtlv~~~~~~~~-------~~-~~~---------------~~~~~~~~l~ 93 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVHLANY-------MH-FTL---------------EYPNMMRRLH 93 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSCTTTH-------HH-HTT---------------CHHHHHHHHH
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCe---EEEEecCCcccc-------cc-chh---------------HHHHHHHHHh
Confidence 455555 9999999999999999987 999999864211 11 000 0124566777
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEc---------------------CCCcEEecCEEEEccCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLS---------------------ATGLIFKYQILVIATGS 124 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~---------------------~~~~~~~~d~liiAtG~ 124 (461)
+.|++++.++.+.+++.+...+.. .+...+++|.+++++|-
T Consensus 94 ~~GV~i~~~~~v~~i~~~~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtgR 155 (156)
T d1djqa2 94 ELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 155 (156)
T ss_dssp HTTCEEEETEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE
T ss_pred hccceEEeccEEEEecCcceEEEeeeccccceeeeeeEEEecccCCccCcEecceEEEEecC
Confidence 899999999999999865433321 12235789999999884
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=1.6e-05 Score=65.55 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=63.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC--CCCCCCCcccccccCCCCCC--CCC-Cce------eecCC-
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA--VAPYERPALSKAYLFPEGTA--RLP-GFH------VCVGS- 72 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~--~~~~~~~~~~~~~~~~~~~~--~~~-~~~------~~~~~- 72 (461)
.++|+|||||..|+-+|..+++.|.+. +.++.... ..... +............. ... ... ...+.
T Consensus 29 gkrVvVIGgG~~g~d~a~~~~r~G~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (162)
T d1ps9a2 29 GNKVAIIGCGGIGFDTAMYLSQPGEST--SQNIAGFCNEWGIDS-SLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQG 105 (162)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCG--GGCHHHHHHHTTBCT-TCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTT
T ss_pred CCceEEEcCchhHHHHHHHHHHcCCcc--ceeHhhhhhhccCCc-chhhhcccccccceeccccceEEEEEeccchhccc
Confidence 479999999999999999999998652 22221100 00000 00000000000000 000 000 00000
Q ss_pred ---CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC-cEEecCEEEEccCC
Q 012545 73 ---GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS 124 (461)
Q Consensus 73 ---~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~liiAtG~ 124 (461)
.........++..+++++.++.+..++.+...+...+. +++++|.+|+|+|-
T Consensus 106 ~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 106 LGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ 161 (162)
T ss_dssp SCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred cchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence 00112345667889999999999999866555544333 35899999999993
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=97.94 E-value=3.6e-06 Score=66.37 Aligned_cols=87 Identities=16% Similarity=0.055 Sum_probs=58.6
Q ss_pred eEEEecCCcceEEccCCC------Cc---EEE--ecCCccc--cCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHH
Q 012545 373 YFYSRAFDLSWQFYGDNV------GD---TVL--FGDNDLA--SATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIA 435 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~------~~---~~~--~~~~~~~--~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~ 435 (461)
....++||+.+..+|.++ |. ... ..+.... ...++|+|+++ ++++|||+|++|++ +.+ ++.++
T Consensus 5 t~~~~vfd~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~ 84 (126)
T d1nhpa3 5 SSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAIS 84 (126)
T ss_dssp CEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHH
T ss_pred CeEEeEcCccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHHHH
Confidence 455677898888889875 21 111 1111111 23456888877 56999999999964 666 79999
Q ss_pred HHHHcCCCCCChhhhhcc-CCCccc
Q 012545 436 KVARVQPSVESLDVLKNE-GLSFAS 459 (461)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~-~~~~~~ 459 (461)
.+|..++|++||..+.-+ .++|.+
T Consensus 85 ~ai~~~~t~~dL~~~~~~yhPt~se 109 (126)
T d1nhpa3 85 LAIQAKMTIEDLAYADFFFQPAFDK 109 (126)
T ss_dssp HHHHTTCBHHHHHTCCCCCCTTTCC
T ss_pred HHHHcCCCHHHHhcCcccCCCCCch
Confidence 999999999887655432 455544
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=4.9e-05 Score=69.73 Aligned_cols=88 Identities=24% Similarity=0.371 Sum_probs=63.5
Q ss_pred HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC-----CCh--h---------hhhc
Q 012545 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR-----PLI--S---------LFKG 297 (461)
Q Consensus 239 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~-----p~~--~---------~~~~ 297 (461)
.+..+..+|+++.++.+.++.. +++++.++.. .+|+ .+.|+.||+|||-- .++ . .++.
T Consensus 142 ~~~~~~~~v~i~~~~~v~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~a 220 (311)
T d1kf6a2 142 QTSLQFPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSH 220 (311)
T ss_dssp HHHTTCTTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTT
T ss_pred HHHHccCcceeEeeeEeeeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhc
Confidence 3444445899999999999987 4677766653 5675 46899999999942 111 1 1134
Q ss_pred cccc-CCCcEEeCCCCCCCCCCEEEeCcccc
Q 012545 298 QVAE-NKGGIETDDFFKTSADDVYAVGDVAT 327 (461)
Q Consensus 298 ~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~ 327 (461)
+... +-.+|.++.+..++.+++|+.|++..
T Consensus 221 Ga~l~dme~iq~~p~~~~~~~~~~~~~~~~~ 251 (311)
T d1kf6a2 221 GVPLRDMGGIETDQNCETRIKGLFAVGECSS 251 (311)
T ss_dssp TCCEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred ccceeecccccccccchhcccCCCcCcceee
Confidence 4444 66789999999999999999999875
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.83 E-value=6.9e-06 Score=76.73 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHH-----HcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFA-----KQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~-----~~g~~~~~V~vie~~~~~ 43 (461)
.|||+||||||+|+++|..|+ +.|++ |+|+|+.+..
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~---v~vlEr~~~~ 47 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKRSTK 47 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCc---EEEEcCCCCC
Confidence 599999999999999999996 46887 9999998753
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=2.9e-05 Score=67.85 Aligned_cols=128 Identities=16% Similarity=0.070 Sum_probs=79.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCc---------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR---------LFTADIAAFYEGYYANKGIKIIKGTVAVGFT 259 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~---------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~ 259 (461)
.+|+|||+|+.|+.+|..|.+. |.+|+++++.+.+... .....+.......+++.|++++.++.|..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 79 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR-- 79 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT--
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc--
Confidence 3799999999999999999765 7799999999875321 12334556677788889999998877521
Q ss_pred ecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCC-CCCCCEEEeCcccccC
Q 012545 260 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFK-TSADDVYAVGDVATFP 329 (461)
Q Consensus 260 ~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~-t~~~~vya~GD~~~~~ 329 (461)
+-.. ..+ .-.+|.+++|+|..+........... +...+......+ .+.+..+..|+.....
T Consensus 80 ---~~~~--~~l----~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (230)
T d1cjca2 80 ---DVTV--QEL----QDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGP 142 (230)
T ss_dssp ---TBCH--HHH----HHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCT
T ss_pred ---cccH--HHH----HhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccCc
Confidence 1000 000 12579999999986544322221111 111111111112 2567788888766554
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.72 E-value=4.7e-05 Score=61.87 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|||||||..|+-+|..+.++|.+. |+++.+.+
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~--V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARR--VFLVFRKG 79 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSE--EEEECSSC
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcc--eeEEEeCC
Confidence 468999999999999999999998654 88887764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.71 E-value=1.2e-05 Score=74.01 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=32.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~~ 43 (461)
.+||+||||||+|++||.+|+++ |++ |+|+|+++..
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~---~~~~~~~~~~ 87 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESSVAP 87 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCe---EEEEEcCCCC
Confidence 57999999999999999999975 776 9999998753
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=0.00019 Score=66.24 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.|+|||+|..|+-+|..+++.|.+|+++++.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 58999999999999999999999999998764
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.71 E-value=0.00022 Score=64.30 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 799999999999999999999999999999864
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.70 E-value=3.9e-06 Score=73.92 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=61.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCccc----------CHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~----------~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+..... ...........+.+.+.... . ..+
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 123 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNK---E-SQL 123 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCT---T-CEE
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcce---e-eee
Confidence 578999999999999999999999999999999887644210 01222233333333222111 1 111
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
.. +.. .+...+..++.+|.||+|+|..+.....
T Consensus 124 ~~--~~~--~~~~~~~~~~~~d~vviAtG~~~~~~~~ 156 (233)
T d1djqa3 124 AL--GQK--PMTADDVLQYGADKVIIATGASECTLWN 156 (233)
T ss_dssp EC--SCC--CCCHHHHHTSCCSEEEECCCEECCHHHH
T ss_pred ec--ccc--cccchhhhhhccceeeeccCCCcccccc
Confidence 11 110 1222333467899999999988766543
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.69 E-value=1.4e-05 Score=74.76 Aligned_cols=35 Identities=40% Similarity=0.531 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHH----cCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAK----QGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~----~g~~~~~V~vie~~~~ 42 (461)
.+||||||+|+|||+||++|++ .|.+ |+||||.+.
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~---V~vieK~~~ 59 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKAAV 59 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSSCT
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCE---EEEEeCCCC
Confidence 4899999999999999999986 4665 999999864
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.62 E-value=1.8e-05 Score=74.47 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||||||+|++|+.+|.+|++.|++ |+|+|++..
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG~~ 41 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMGRS 41 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCC
Confidence 368999999999999999999999987 999999753
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.56 E-value=2.9e-05 Score=72.92 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||||||+|++|+.+|.+|++.|++ |+|+|++..
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG~~ 36 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQL 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCe---EEEEecCCC
Confidence 4899999999999999999999987 999999854
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.53 E-value=6e-05 Score=69.12 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=34.6
Q ss_pred HHHhcCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCcc
Q 012545 184 AIKAKKNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWC 225 (461)
Q Consensus 184 ~l~~~~~~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~ 225 (461)
.+.......|+|||+|+.|+.+|..|++. |.+|+++++.+.+
T Consensus 44 ~~~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 44 DLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87 (311)
T ss_dssp HHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred ccccccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence 33333566799999999999999999864 8999999998764
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.53 E-value=3.3e-05 Score=72.50 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=32.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||+||||+|+||+.+|.+|++.|.+ |+|+|+++.
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~---VlvLEaG~~ 36 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKK---VLLLERGGP 36 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCe---EEEEEccCC
Confidence 69999999999999999999999876 999999954
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.44 E-value=4.2e-05 Score=72.62 Aligned_cols=36 Identities=28% Similarity=0.561 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~~ 42 (461)
+.||+||||||+||+.+|.+|++.+ .+ |+|||+++.
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~---VLlLEaG~~ 59 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENPKIK---VLVIEKGFY 59 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCC---EEEEESSCC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCCCCe---EEEEcCCCC
Confidence 4699999999999999999999987 45 999999964
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.40 E-value=4.9e-05 Score=71.99 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~~ 42 (461)
+.||+||||||.||+.+|.+|++.+ ++ |+|+|+++.
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~---VLvLEaG~~ 52 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTENPNIS---VLVIESGSY 52 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCC---EEEEESSCC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHCCCCe---EEEECCCCC
Confidence 4599999999999999999999875 45 999999964
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.00032 Score=54.69 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=61.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH-H
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-K 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (461)
.++|+|||+|-+++-.|..|++...+ |+|+-+.+...- .....+.+ +
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~---V~li~r~~~~~~-----------------------------~~~~~~~~~~ 77 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEMKA-----------------------------DQVLQDKLRS 77 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSE---EEEECSSSSCCS-----------------------------CHHHHHHHHT
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCc---eEEEeccccccc-----------------------------cccccccccc
Confidence 57999999999999999999997544 999988753110 01122223 3
Q ss_pred HcCcEEEcCCeEEEEeCCCCE---EEcC---CC--cEEecCEEEEccC
Q 012545 84 EKGIELILSTEIVRADIASKT---LLSA---TG--LIFKYQILVIATG 123 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~---v~~~---~~--~~~~~d~liiAtG 123 (461)
..+|+++.++.+.++.-++.. +.+. ++ ++++.|.++++.|
T Consensus 78 ~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 78 LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred ccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 357999999999998765332 3332 23 4689999999988
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.25 E-value=2.3e-05 Score=68.82 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=28.2
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCC---CcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKP---GELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~---~~V~vie~~~ 41 (461)
+|+|||||++|+++|++|+++|++. .++++++++.
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~ 39 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF 39 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence 7999999999999999999999862 1355665553
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.25 E-value=4.8e-05 Score=71.08 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||+||||||+||+.+|.+|++. ++ |+|||+++.
T Consensus 26 ~YD~IIVGsG~aG~vlA~rLae~-~k---VLvLEaG~~ 59 (351)
T d1ju2a1 26 SYDYVIVGGGTSGCPLAATLSEK-YK---VLVLERGSL 59 (351)
T ss_dssp EEEEEEECCSTTHHHHHHHHTTT-SC---EEEECSSBC
T ss_pred CccEEEECccHHHHHHHHHhcCC-CC---EEEEecCCC
Confidence 48999999999999999999874 55 999999963
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=97.22 E-value=0.0017 Score=57.98 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEccCCccCCccc------C---------------------
Q 012545 180 KLVEAIKAKKNGKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMPRLF------T--------------------- 231 (461)
Q Consensus 180 ~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~-~g~~Vtli~~~~~~~~~~~------~--------------------- 231 (461)
++.+.+.......|+|||+|+.|+.+|..|++ .|.+|+++++.+.+..... +
T Consensus 23 ~~~~~~~~~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 102 (278)
T d1rp0a1 23 RYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDE 102 (278)
T ss_dssp HHHHHHHHHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEE
T ss_pred hhhcccccccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceec
Confidence 33333333346679999999999999999987 5999999999875321100 0
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--------------CCCcEEecCEEEEcc
Q 012545 232 -----------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--------------KDGRTLEADIVVVGV 286 (461)
Q Consensus 232 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--------------~~G~~i~aD~vi~a~ 286 (461)
..+...+.+.++..++.+..++.+..+.. .++++..+.. .++.++.++.+|.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~ 181 (278)
T d1rp0a1 103 QDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSC 181 (278)
T ss_dssp CSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECC
T ss_pred CCccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeee-cCCeEEEEEeccceeeeeecccccccceeeccceEEECc
Confidence 12233445556677888888888877765 3444444432 123578999999999
Q ss_pred CCCCC
Q 012545 287 GGRPL 291 (461)
Q Consensus 287 G~~p~ 291 (461)
|....
T Consensus 182 G~~~~ 186 (278)
T d1rp0a1 182 GHDGP 186 (278)
T ss_dssp CSSST
T ss_pred CCCcc
Confidence 96543
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.13 E-value=0.0047 Score=56.81 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=27.5
Q ss_pred CcEEEECCCHHHHHHHHHHHH----CCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~----~g~~Vtli~~~~ 223 (461)
-.|+|||+|..|+-+|..+++ .|.+|.++++.+
T Consensus 22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~ 58 (356)
T d1jnra2 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58 (356)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence 368999999999888877764 699999999754
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.06 E-value=0.0017 Score=48.70 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=51.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||+|.+|+-.|..|++...+ ++++.+.+.... . .
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~---v~~~~~r~~~~~----------~---------------------------~ 71 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKH---PIYQSLLGGGDI----------Q---------------------------N 71 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCS---SEEEECTTCCSC----------B---------------------------C
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCE---EEEEEecCcccc----------c---------------------------c
Confidence 57999999999999999999987654 566555432110 0 0
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEe-cCEEEEc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFK-YQILVIA 121 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~-~d~liiA 121 (461)
.++... ..+.+++...+.+.+.+|..+. .|++|+|
T Consensus 72 ~~~~~~--~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 72 ESLQQV--PEITKFDPTTREIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp SSEEEE--CCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred ccceec--CCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence 011111 2456677788889999998876 6999986
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=97.04 E-value=0.00046 Score=54.90 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhcC-CCcEEEECC------CH----HHHHHHHHHHHCC--CcEEEEccCCccCC-cccCHHHHHHH
Q 012545 173 REIDDADKLVEAIKAKK-NGKAVVVGG------GY----IGLELSAALKINN--IDVSMVYPEPWCMP-RLFTADIAAFY 238 (461)
Q Consensus 173 ~~~~~~~~l~~~l~~~~-~~~v~VvG~------G~----~g~e~a~~l~~~g--~~Vtli~~~~~~~~-~~~~~~~~~~~ 238 (461)
....++.+|+++|++.+ +.++++.-. +. +++.++..|++.| .++.++...+.... ..+.+.+.+.+
T Consensus 15 ~~~~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T d1fcda2 15 KAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLY 94 (141)
T ss_dssp SCSHHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHH
Confidence 45577899999999875 457766522 22 3444555666666 46777776654322 11234556777
Q ss_pred HHHHHhcCcEEEcCCc--EEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 239 EGYYANKGIKIIKGTV--AVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 239 ~~~l~~~GV~v~~~~~--v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
.+.+++.||+++.+.. +.+++. ..+ .+++.+|+++++|++++..
T Consensus 95 ~~~~~~~~I~~~~~~~~~~v~vd~--~~~--~~~~~~Ge~v~yD~l~vvP 140 (141)
T d1fcda2 95 GFGTENAMIEWHPGPDSAVVKVDG--GEM--MVETAFGDEFKADVINLIP 140 (141)
T ss_dssp CSTTSSCSEEEECSSTTCEEEEEE--TTT--EEEETTCCEEECSEEEECC
T ss_pred HHHHHhcCceeeecCCceEEeecC--CcE--EEEeCCCcEEeeeEEEeCC
Confidence 7778899999998765 556654 332 5788999999999998753
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0019 Score=50.13 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=63.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|+|||+|-+++-.|..|.+...+ |+++-+.+...-. ... .....+...
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~~~~~-----~~~--------------------~~~~~~~~~ 77 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDGFRAE-----KIL--------------------IKRLMDKVE 77 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSE---EEEECSSSSCCCC-----HHH--------------------HHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCc---EEEEeecccccch-----hHH--------------------HHHHHHhhc
Confidence 357999999999999999999987644 9999887531100 000 011233344
Q ss_pred HcCcEEEcCCeEEEEeCCCCE---EEcCC---C---cEEecCEEEEccC
Q 012545 84 EKGIELILSTEIVRADIASKT---LLSAT---G---LIFKYQILVIATG 123 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~---v~~~~---~---~~~~~d~liiAtG 123 (461)
..++.++.++.+.++.-++.. |.+.+ + ++++.|.++++.|
T Consensus 78 ~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 78 NGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp TSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred ccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 578999999999888765542 44432 1 4689999999987
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.96 E-value=0.00026 Score=61.56 Aligned_cols=92 Identities=16% Similarity=0.073 Sum_probs=66.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEccCCccCCc---------ccCHHHHHHHHHHHHhcCcEEEcCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN-------IDVSMVYPEPWCMPR---------LFTADIAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g-------~~Vtli~~~~~~~~~---------~~~~~~~~~~~~~l~~~GV~v~~~~ 253 (461)
+.+|+|||+|++|+.+|..|.+.| .+|+++++.+.+... .....+.+.....+...|++++++.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 81 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence 568999999999999999999887 579999998765321 1234556666778889999999987
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 254 ~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
++..... ++ .....+|.+++|+|..+..
T Consensus 82 ~v~~~~~----------~~-~~~~~~~~v~~atGa~~~~ 109 (239)
T d1lqta2 82 VVGEHVQ----------PG-ELSERYDAVIYAVGAQSRG 109 (239)
T ss_dssp CBTTTBC----------HH-HHHHHSSEEEECCCCCEEC
T ss_pred Eeccccc----------hh-hhhccccceeeecCCCccc
Confidence 6521110 00 0123579999999976543
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0015 Score=55.95 Aligned_cols=96 Identities=25% Similarity=0.425 Sum_probs=62.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc-------------------------------CC---cccCH-----
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-------------------------------MP---RLFTA----- 232 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-------------------------------~~---~~~~~----- 232 (461)
.++|||+|+.|+++|..+++.|.+|.++++...- .. ..++.
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE 84 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence 4899999999999999999999999999864310 00 00111
Q ss_pred -------HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 233 -------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 233 -------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.+.....+.+++.||+++.+.-. ... ... ..+. ....++.++.+++++|.+|..+
T Consensus 85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~--~~~--~~~-~~~~-~~~~~~~~~~~~iatG~~p~vp 146 (221)
T d3grsa1 85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAA--FTS--DPK-PTIE-VSGKKYTAPHILIATGGMPSTP 146 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCE--ECS--CSS-CEEE-ETTEEEECSCEEECCCEEECCC
T ss_pred hhheEEeeeccchhhhhccCceEEEEEeee--ecc--ccc-eeee-eeccccccceeEEecCccccCC
Confidence 11223456678889998866432 111 111 1222 2335789999999999877643
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.001 Score=48.63 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+.++|+|||.|..|+++|..|.++|.+ |+++|....
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~---v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCC---CEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCE---EEEeeCCcC
Confidence 357899999999999999999999987 999998753
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.65 E-value=0.0029 Score=49.22 Aligned_cols=88 Identities=24% Similarity=0.234 Sum_probs=61.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|+|||+|-+++-.|..|++.-.+ |+|+-+.+.+.-+ .....+..+
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~~ra~----------------------------~~~~~~l~~ 81 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSK---VYIIHRRDAFRAS----------------------------KIMQQRALS 81 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSE---EEEECSSSSCCSC----------------------------HHHHHHHHT
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCc---EEEEEeccccccc----------------------------hhhhhcccc
Confidence 468999999999999999999986544 9999888542100 011233444
Q ss_pred HcCcEEEcCCeEEEEeCCCC-----EEEc---CCC--cEEecCEEEEcc
Q 012545 84 EKGIELILSTEIVRADIASK-----TLLS---ATG--LIFKYQILVIAT 122 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~-----~v~~---~~~--~~~~~d~liiAt 122 (461)
..+|+++.++++..+.-+.+ .+.+ .++ ++++.|.+++|.
T Consensus 82 ~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 82 NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred CCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 56799999999998865432 1322 233 478999999873
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.51 E-value=0.0015 Score=52.65 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=34.5
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
||+++++|.|||+|..|.++|..|...++. +++|+|.++
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~--el~L~D~~~ 41 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK 41 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCc--eEEEEEecc
Confidence 788899999999999999999998888864 599999774
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.42 E-value=0.0013 Score=59.86 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=36.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~ 228 (461)
.++|+|||+|.+|+-+|..|++.|.+|+++++.+++...
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~ 40 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN 40 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence 589999999999999999999999999999999987653
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.0016 Score=59.46 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=35.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 227 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~ 227 (461)
+..+|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG 42 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence 467899999999999999999999999999999887643
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.20 E-value=0.0017 Score=53.40 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.++|+|||+|..|..+|..|.+.|++ |+|++++.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~---V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIK---VTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCE---EEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECCh
Confidence 57899999999999999999999986 99999985
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.11 E-value=0.0022 Score=57.31 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 226 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 226 (461)
+|+|||+|+.|+.+|..|++.|.+|+++++++++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 36 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 69999999999999999999999999999987763
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.99 E-value=0.0043 Score=49.27 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|.++++|.|||+|..|.++|..|+..+. ..++.|+|.++
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~ 40 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVK 40 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence 4567899999999999999999999886 45799999874
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.96 E-value=0.0032 Score=52.01 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++++.|||+|..|+..|..|+++|++ |+++++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~---V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQS---VLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCE---EEEEECCH
Confidence 36899999999999999999999986 99999874
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.96 E-value=0.0034 Score=54.66 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.++|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5789999999999999999999999999999853
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.93 E-value=0.003 Score=49.29 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=30.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++|+|+|+|.-|...|..|.+.|++ |+++|+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~---v~vid~d~ 33 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHD---IVLIDIDK 33 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC---cceecCCh
Confidence 3799999999999999999999987 99999985
|
| >d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.014 Score=43.81 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=35.4
Q ss_pred EEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhh
Q 012545 409 GTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLK 451 (461)
Q Consensus 409 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 451 (461)
+.||+++++|+|+.+++ --.++..+.++|..+...+||..++
T Consensus 87 VIFYLrd~~VVGVLLWN-vFnrm~iAR~iI~~~~~~~DlnEvA 128 (131)
T d1m6ia3 87 VIFYLRDKVVVGIVLWN-IFNRMPIARKIIKDGEQHEDLNEVA 128 (131)
T ss_dssp EEEEEETTEEEEEEEES-CCSCHHHHHHHHHHCCBCSCSTTGG
T ss_pred EEEEecCCcEEEEEEec-ccCccHHHHHHHHcCCccchHHHHH
Confidence 34788999999999996 5568999999999999998877654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.81 E-value=0.0043 Score=50.79 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.-+|+|||+|.+|+.||..+.+.|.. |+++|.+.
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~---V~v~D~~~ 62 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVRA 62 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCS
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCE---EEEEeccH
Confidence 46999999999999999999999876 99999885
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.78 E-value=0.0046 Score=49.85 Aligned_cols=34 Identities=35% Similarity=0.417 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.-+|+|||+|.+|+.|+..+.+.|.. |+++|.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~---V~~~D~~~ 65 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDINV 65 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCE---EEEEeCcH
Confidence 57999999999999999999999876 99999874
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.003 Score=50.57 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
+.++++|||||..|+.-|..|.+.|.+ |+|+.++
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~---VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 468999999999999999999999876 9999876
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.67 E-value=0.0042 Score=48.50 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=30.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++++|||.|..|...|..|.+.|++ |+++|+++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~---vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC---CEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe---EEEecCcH
Confidence 5799999999999999999999987 99999985
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0047 Score=55.55 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=34.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~ 228 (461)
.++|||+|++|+-+|..|++.|.+|+++++.+++...
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~ 39 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN 39 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence 5899999999999999999999999999999987654
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.0077 Score=48.70 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
++|+|||+|.-|...|..|++.|++ |+++++.+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~---V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHE---VQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCc---eEEEEcCHH
Confidence 3899999999999999999999987 999999863
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0071 Score=50.48 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.++|.|||+|.-|..-|..+++.|++ |+++|.++
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~ 37 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQTE 37 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCc---EEEEECCh
Confidence 57999999999999999999999987 99999985
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.25 E-value=0.033 Score=41.69 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.+++|+|||+|.+|..-|..|.+.|.+|+++...
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~ 44 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5799999999999999999999999999998653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.16 E-value=0.012 Score=46.73 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=33.6
Q ss_pred CCC-CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~-~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|++ ...+|.|||+|..|.++|..|...++ ..++.|+|.++
T Consensus 1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~ 41 (148)
T d1ldna1 1 MKNNGGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANE 41 (148)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence 544 36799999999999999999999886 45799999774
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.15 E-value=0.006 Score=48.69 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
.+++++|||||.+|.+-+..|.+.|.+|+++.+
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 589999999999999999999999999999964
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0084 Score=49.99 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 226 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 226 (461)
-++|+|||+|.+|..+|..++..|.+|+++++.+..+
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l 40 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDIL 40 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence 5799999999999999999999999999999866543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=95.01 E-value=0.0082 Score=54.83 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHH-----HCCCcEEEEccCCccCC
Q 012545 192 KAVVVGGGYIGLELSAALK-----INNIDVSMVYPEPWCMP 227 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~-----~~g~~Vtli~~~~~~~~ 227 (461)
.|+|||+|++|+-+|..|+ +.|.+|+++++.+.+..
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~ 49 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY 49 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc
Confidence 5899999999999999996 57999999999876543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.015 Score=42.01 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=54.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
++|+|+|+|.|.+|..+|..|.+.|.+|++.+..+..-.. +.+ +.++.++++..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~~-------------- 57 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGSL-------------- 57 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESBC--------------
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeeccc--------------
Confidence 5889999999999999999999999999999875432211 111 12333332210
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhhh
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLFK 296 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~~ 296 (461)
.....-.+|.||+++|..++.++++
T Consensus 58 ---~~~~~~~~d~vi~SPGi~~~~~~~~ 82 (93)
T d2jfga1 58 ---NDEWLMAADLIVASPGIALAHPSLS 82 (93)
T ss_dssp ---CHHHHHHCSEEEECTTSCTTSHHHH
T ss_pred ---chhhhccCCEEEECCCCCCCCHHHH
Confidence 0001236799999999999887764
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0094 Score=54.26 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=32.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 226 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 226 (461)
.|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~G 35 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG 35 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSB
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc
Confidence 38999999999999999999999999999887653
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=94.90 E-value=0.013 Score=50.77 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
.|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5899999999999999999999999999987654
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=94.86 E-value=0.013 Score=50.90 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
..|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 46999999999999999999999999999998764
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.78 E-value=0.0077 Score=50.09 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=30.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.+|+|||+|.-|.+.|..|++.|++ |+++.+++
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~g~~---V~l~~r~~ 40 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKKCRE---VCVWHMNE 40 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTEEE---EEEECSCH
T ss_pred eceEEEECCCHHHHHHHHHHHHcCCe---EEEEEecH
Confidence 45899999999999999999998876 99999874
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.70 E-value=0.018 Score=43.34 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|+|||+|..|..-|..|.+.|.+ |+++++..
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~---v~v~~~~~ 45 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGAR---LTVNALTF 45 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccC
Confidence 468999999999999999999998876 99998764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.60 E-value=0.011 Score=48.93 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
+-++|+|||+|.+|..+|..++..|.+|+++++.+.
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 468999999999999999999999999999998654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.59 E-value=0.013 Score=47.72 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.|+|+|+|+|.+|..+|..|.+.|.+|++++|.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~ 34 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT 34 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 589999999999999999999999999999874
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.57 E-value=0.014 Score=49.04 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=30.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|.|||.|..|+..|..|++.|++ |+.+|.++
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~---V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHE---VIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCc---EEEEeCCH
Confidence 699999999999999999999987 99999874
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=94.42 E-value=0.074 Score=44.98 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.++|+|||+|..|.-+|..|++.+.+ ++++-+..
T Consensus 32 gK~V~VvG~G~Sa~dia~~~~~~~~~---~~~~~~~~ 65 (235)
T d1w4xa2 32 GQRVGVIGTGSSGIQVSPQIAKQAAE---LFVFQRTP 65 (235)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSE---EEEEESSC
T ss_pred CCEEEEECCCccHHHHHHHHHhhhcc---cccccccc
Confidence 58999999999999999999998765 66666554
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=94.34 E-value=0.027 Score=44.68 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=32.1
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 3 EKSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 3 ~~~~dvvIIG-~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.+.++|.||| .|.-|.+.|..|++.|+. |+++|+..
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~---V~~~d~~~ 43 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYP---ISILDRED 43 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCC---EEEECTTC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCC---cEeccccc
Confidence 3467999999 699999999999999997 99999874
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.15 E-value=0.024 Score=49.91 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~ 37 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 489999999999999999999999999998654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.06 E-value=0.024 Score=50.55 Aligned_cols=32 Identities=22% Similarity=0.555 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEccCC
Q 012545 192 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEP 223 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~ 223 (461)
+|+|||+|.+|+-+|..|++.|. +|+++++.+
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 69999999999999999999995 799999874
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.02 E-value=0.023 Score=46.49 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.++++|+|+|..|.-+|..|++.|.+|++++|.
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 378999999999999999999999999999873
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.00 E-value=0.027 Score=46.52 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|.|||+|.-|..-|..+++.|++ |+++|.++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTP---ILMKDINE 37 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCC---EEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 457899999999999999999999997 99999985
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=93.87 E-value=0.033 Score=44.61 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=32.7
Q ss_pred HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccC
Q 012545 183 EAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE 222 (461)
Q Consensus 183 ~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~ 222 (461)
+.+.....++++|||+|.+|..++..|...|. ++++..|.
T Consensus 17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 33444568899999999999999999999997 58887763
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=93.65 E-value=0.043 Score=43.19 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++|.|||+|..|.++|..|..++. ..++.|+|.++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeccc
Confidence 689999999999999999998886 45799999764
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.40 E-value=0.053 Score=42.42 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=30.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|.|||+|..|.++|..|...+. ..++.|+|.++
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~ 35 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-CceEEEecccc
Confidence 79999999999999999999876 45799999875
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.042 Score=44.00 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
+|+|+|+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 689999999999999999999999999998664
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=93.39 E-value=0.067 Score=42.67 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.+.+|.|||+|..|.++|+.|...++ -.++.|+|.++
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~~ 55 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSL-ADELALVDVLE 55 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence 35799999999999999999999887 45799999874
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=93.15 E-value=0.059 Score=42.12 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=30.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.+|.|||+|..|.++|..|...++ ..++.|+|..+
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccC
Confidence 589999999999999999999876 45799999775
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.12 Score=38.58 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCh-----------HHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 3 EKSFKYVILGGGV-----------SAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~-----------aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+..++|+|||+|| ++..|+.+|++.|++ ++++..++.
T Consensus 2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~---~IliN~NPe 49 (121)
T d1a9xa4 2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE---TIMVNCNPE 49 (121)
T ss_dssp SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE---EEEECCCTT
T ss_pred CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe---EEEEecChh
Confidence 3568999999995 788999999999998 899999975
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.10 E-value=0.061 Score=42.88 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++.+|.|||+|..|.++|+.|...++ ..++.|+|.++
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~~ 54 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGL-ADELALVDADT 54 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence 35689999999999999999999886 45799999774
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=93.01 E-value=0.046 Score=48.68 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.|+|||+|..|+-+|..+++.|.+|+++++.+.
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~ 50 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV 50 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 699999999999999999999999999998764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.99 E-value=0.11 Score=39.77 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
+|+|+|+|..|..+|..|.+.|.+|++++.
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~ 31 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDI 31 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecC
Confidence 689999999999999999999999999985
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.95 E-value=0.049 Score=43.71 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=29.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|.|||.|.-|.+.|..|++.|++ |+++|+++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~---V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHY---LIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCE---EEEEECCc
Confidence 799999999999999999999986 99999874
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.86 E-value=0.036 Score=46.73 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.++|||+|+.|+.+|..+++.|.+|.++++..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 58999999999999999999999999998754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.85 E-value=0.045 Score=44.79 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=28.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
++|.|||+|.-|.+.|..|++.|++ |+++.+.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~---V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNE---VRIWGTE 32 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCE---EEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCE---EEEEEec
Confidence 3799999999999999999999876 9998764
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=92.80 E-value=0.058 Score=42.17 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=30.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+++|.|||+|..|.++|..|...++. ++.++|..+
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~~l~--dl~l~D~~~ 35 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE 35 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCcc--eEEEEeecc
Confidence 35899999999999999999988763 599999764
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=92.67 E-value=0.064 Score=41.94 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.+|.|||+|..|.++|..|..+++ ..++.|+|.++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence 579999999999999999999886 45799999764
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.60 E-value=0.073 Score=41.57 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++|.|||+|..|.++|..|..++. -.++.|+|.++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~ 35 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIAE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCc-CceEEEEeccc
Confidence 389999999999999999998875 45799999764
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=92.53 E-value=0.055 Score=49.49 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.|+|||+|+.|+-+|..|++.|.+|.++++..+
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 36 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence 489999999999999999999999999999754
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=92.47 E-value=0.073 Score=42.86 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|+|||+|-++.+++..|.+.|.+. |+|+.|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~--I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEK--LKIYARNV 51 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCC--EEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCE--EEEecccH
Confidence 4578999999999999999999998754 99988773
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=0.11 Score=38.76 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCCcEEEECCCH-----------HHHHHHHHHHHCCCcEEEEccCCc
Q 012545 189 KNGKAVVVGGGY-----------IGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 189 ~~~~v~VvG~G~-----------~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
..++|+|+|+|+ .++.++.+|++.|.++.++..+|.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 357899999985 678899999999999999988765
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.18 E-value=0.067 Score=49.40 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHH------CCCcEEEEccCCcc
Q 012545 191 GKAVVVGGGYIGLELSAALKI------NNIDVSMVYPEPWC 225 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~------~g~~Vtli~~~~~~ 225 (461)
-.|+|||+|+.|+-+|..|++ .|.+|.++++...+
T Consensus 33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p 73 (380)
T d2gmha1 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73 (380)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence 369999999999999999987 79999999998665
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=92.18 E-value=0.068 Score=48.96 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.++|||+|+.|+-+|..|++.|.+|+++++...
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 41 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 41 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 489999999999999999999999999998743
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.17 E-value=0.09 Score=40.92 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++|.|||+|-.|.++|..|..++. ..++.|+|.++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~~ 35 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVDK 35 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeccc
Confidence 389999999999999999998886 45799999774
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.11 Score=39.43 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCh-----------HHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGV-----------SAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~-----------aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..++|+|||+|| ++..|+.+|++.|++ +.++..++.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~---~iliN~NP~ 52 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR---VINVNSNPA 52 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE---EEEECSCTT
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe---EEEecCchH
Confidence 468999999986 788999999999998 999999975
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=92.06 E-value=0.066 Score=48.04 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
-.|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~ 57 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3699999999999999999999999999998764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.11 Score=38.51 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=33.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
.++|.|||||-=|...|..+.+.|++ +.++|+++..|
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~---v~v~d~~~~~P 47 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVE---VIAVDRYADAP 47 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCE---EEEEESSTTCG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCE---EEEEcCCCCCc
Confidence 47899999999999999999999998 99999987643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=91.81 E-value=0.064 Score=41.26 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=49.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 270 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~ 270 (461)
|+++|+|.|..|..+|..|.+.|.+|++++. +++..+. +++.|..++.+.. .+.. +
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~---------d~~~~~~----~~~~~~~~~~gd~-------~~~~---~- 56 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDI---------NEEKVNA----YASYATHAVIANA-------TEEN---E- 56 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEES---------CHHHHHH----TTTTCSEEEECCT-------TCTT---H-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecC---------cHHHHHH----HHHhCCcceeeec-------ccch---h-
Confidence 5789999999999999999999999999975 4444333 3455655443211 0100 0
Q ss_pred eCCCcEEecCEEEEccCCCCCh
Q 012545 271 LKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 271 ~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+..-..-.+|.+|++++-....
T Consensus 57 l~~a~i~~a~~vi~~~~~~~~~ 78 (134)
T d2hmva1 57 LLSLGIRNFEYVIVAIGANIQA 78 (134)
T ss_dssp HHHHTGGGCSEEEECCCSCHHH
T ss_pred hhccCCccccEEEEEcCchHHh
Confidence 0000123689999998865433
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=91.73 E-value=0.31 Score=38.74 Aligned_cols=96 Identities=21% Similarity=0.363 Sum_probs=59.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
++.+|+|+|+|..|...+....++|.+|++++. +.+..+.++..+... ++.....+ +.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~---------~~~~l~~l~~~~~~~-~~~~~~~~--------~~---- 88 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDI---------NVERLSYLETLFGSR-VELLYSNS--------AE---- 88 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES---------CHHHHHHHHHHHGGG-SEEEECCH--------HH----
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeC---------cHHHHHHHHHhhccc-ceeehhhh--------hh----
Confidence 578999999999999999999999999999975 333444454444332 32221111 00
Q ss_pred EEeCCCcEEecCEEEEc---cCCCCChhhhhccccc-CCCcEEeC
Q 012545 269 VKLKDGRTLEADIVVVG---VGGRPLISLFKGQVAE-NKGGIETD 309 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a---~G~~p~~~~~~~~~~~-~~g~i~vd 309 (461)
+. ...-++|.||-+ +|.++..-.-+.-+.. ..|.+.||
T Consensus 89 --l~-~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 89 --IE-TAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp --HH-HHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred --HH-HhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence 00 012367988876 4555444332333333 67888887
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=91.72 E-value=0.092 Score=42.32 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=30.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|+|+|+|-++.+++..|.+.|.+ |+|+.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~---i~I~nRt~ 51 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCA---VTITNRTV 51 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceE---EEeccchH
Confidence 357999999999999999999998864 99998874
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.68 E-value=0.26 Score=38.64 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=51.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 269 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v 269 (461)
..+++|+|.|..|..++..|.+.|.+|++++. +++......+.+...|+.++.+.... . .+
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~---------d~~~~~~~~~~~~~~~~~vi~Gd~~d-------~---~~ 63 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISN---------LPEDDIKQLEQRLGDNADVIPGDSND-------S---SV 63 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEEC---------CCHHHHHHHHHHHCTTCEEEESCTTS-------H---HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEec---------cchhHHHHHHHhhcCCcEEEEccCcc-------h---HH
Confidence 45899999999999999999999999999875 33333333344555678776542200 0 00
Q ss_pred EeCCCcEEecCEEEEccCCC
Q 012545 270 KLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 270 ~~~~G~~i~aD~vi~a~G~~ 289 (461)
+..-.--+||.+|++++-.
T Consensus 64 -L~~a~i~~a~~vi~~~~~d 82 (153)
T d1id1a_ 64 -LKKAGIDRCRAILALSDND 82 (153)
T ss_dssp -HHHHTTTTCSEEEECSSCH
T ss_pred -HHHhccccCCEEEEccccH
Confidence 0000012588999988754
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.68 E-value=0.088 Score=41.24 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=29.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~-G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|.|||+ |..|.++|..|...++ -.++.|+|..+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~ 36 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREH 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCc-ccccccccchh
Confidence 7999996 9999999999998875 34699999773
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.66 E-value=0.11 Score=41.01 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=30.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.+|.|||+|..|.++|..|...+.. ++.|+|.++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~--el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC--eEEEEeccC
Confidence 46899999999999999988887764 699999874
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=91.56 E-value=0.085 Score=48.04 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.++|||+|..|+-+|..|++.|.+|.++++.+.
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~ 38 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI 38 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence 589999999999999999999999999998754
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=91.25 E-value=0.088 Score=47.33 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.|+|||+|+.|+-+|..+++.|.+|.++++.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 49999999999999999999999999999864
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.14 E-value=0.11 Score=40.54 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=29.2
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~-G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|+|||| |..|.++|..|...++ -.++.|+|.++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~~ 36 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAH 36 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSS
T ss_pred eEEEECCCChHHHHHHHHHHhCCc-cceEEEEeccc
Confidence 7999996 9999999999998886 45799999763
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=90.94 E-value=0.088 Score=47.10 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~ 53 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF 53 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 489999999999999999999999999998764
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.18 Score=39.63 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+-++||+|.|..|...+..|.+.|.+ |+++|.++
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~---v~vId~d~ 36 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQN---VTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCC---EEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC---EEEEeccc
Confidence 34699999999999999999999887 99999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=90.84 E-value=0.098 Score=35.95 Aligned_cols=34 Identities=26% Similarity=0.175 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
|+|.|+|+|..|..++.+..++|.++.+++..+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5789999999999999999999999999987643
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.76 E-value=0.084 Score=43.15 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=29.2
Q ss_pred eEEEE-cCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVIL-GGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvII-G~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|.|| |+|.-|.+.|..|++.|++ |++..+++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~---V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHE---IVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCE---EEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCE---EEEEECCH
Confidence 69999 6799999999999999987 99999885
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.15 Score=41.54 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.++|+|||+|-+|.+++..|.+.|.+. ++++.+.+
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~~--i~i~nR~~ 52 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGLKE--IKLFNRRD 52 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSE--EEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHhhcCCce--Eeeeccch
Confidence 479999999999999999999988754 99999874
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.71 E-value=0.085 Score=43.59 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=27.2
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|.|||.|..|+.+|..++ .|++ |+.+|.++
T Consensus 2 kI~ViGlG~vGl~~a~~~a-~g~~---V~g~Din~ 32 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLLS-LQNE---VTIVDILP 32 (196)
T ss_dssp EEEEECCSHHHHHHHHHHT-TTSE---EEEECSCH
T ss_pred EEEEECCChhHHHHHHHHH-CCCc---EEEEECCH
Confidence 7999999999999998776 4876 99999885
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.11 Score=41.88 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=29.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.-.|+|+|+|+.|+.++..++..|.. +|+++|+++
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~ 61 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSA 61 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCH
Confidence 35799999999999999999888864 389999874
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.35 E-value=0.19 Score=40.60 Aligned_cols=125 Identities=19% Similarity=0.156 Sum_probs=69.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCC--cEEEEEecCCCCE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--VAVGFTTNADGEV 266 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~--~v~~i~~~~~g~~ 266 (461)
++.+|+|+|+|..|...+.....+|.+|++++.+..- .+.+++.+-+++.-. .....+. ..+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~-------------~~~l~~l~~~~i~~~~~~~~~~~~-~~gyA 93 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT-------------KEQVESLGGKFITVDDEAMKTAET-AGGYA 93 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT-------------HHHHHHTTCEECCC----------------
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH-------------HHHHHHhhcceEEEeccccccccc-cccch
Confidence 5789999999999999999999999999999865432 245566666665210 1111111 11111
Q ss_pred EEEE--eCCC-------cEEecCEEEEc---cCCCCChhhhhccccc-CCCcEEeCC------CCCCCCCC-EEEeCccc
Q 012545 267 KEVK--LKDG-------RTLEADIVVVG---VGGRPLISLFKGQVAE-NKGGIETDD------FFKTSADD-VYAVGDVA 326 (461)
Q Consensus 267 ~~v~--~~~G-------~~i~aD~vi~a---~G~~p~~~~~~~~~~~-~~g~i~vd~------~~~t~~~~-vya~GD~~ 326 (461)
..+. +..- ..-++|.||-+ .|.+++.-.-+.-+.. ..|.+.||= .++|+.|+ +|..-++.
T Consensus 94 ~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Ets~~~~~~~~~gV~ 173 (183)
T d1l7da1 94 KEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVK 173 (183)
T ss_dssp --------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEE
T ss_pred hhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccccCcCCCEEEECCEE
Confidence 1110 0000 01258999875 4555433222333333 678888873 35666654 66655554
Q ss_pred c
Q 012545 327 T 327 (461)
Q Consensus 327 ~ 327 (461)
.
T Consensus 174 ~ 174 (183)
T d1l7da1 174 I 174 (183)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.10 E-value=0.2 Score=37.01 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
..+|.|+|||..|..++.+..++|.++.++++.+.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 45799999999999999999999999999987654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.10 E-value=0.36 Score=42.15 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=42.6
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEc
Q 012545 190 NGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251 (461)
Q Consensus 190 ~~~v~VvG~-G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~ 251 (461)
.++|+|.|+ |++|..++..|.+.|.+|+.+.|.+... +... ......+...+++++.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~-~~~~~~~~~~~v~~v~ 60 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS----NIDK-VQMLLYFKQLGAKLIE 60 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS----CHHH-HHHHHHHHTTTCEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc----chhH-HHHHhhhccCCcEEEE
Confidence 467999996 9999999999999999999998865432 2222 2334556777888764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.03 E-value=0.2 Score=40.02 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=29.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|.|||.|.-|.+.|..|.+.|+ ..+|..+|+++
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~ 36 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINP 36 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECCh
Confidence 69999999999999999999886 34588888874
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=89.56 E-value=0.13 Score=35.30 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=31.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+.|.|||||-=|...+....+.|++ +.++++++.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~---v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIA---VWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEE---EEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCE---EEEEcCCCC
Confidence 5799999999999999999999998 999999865
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=89.43 E-value=0.18 Score=40.32 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=29.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.-.|+|+|+|+.|+.++..++..|.+ |+++|+++
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~---vi~v~~~~ 60 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAF---VVCTARSP 60 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CCEEEEEcccccchhhHhhHhhhccc---ccccchHH
Confidence 35799999999999999888888865 99999874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.27 E-value=0.19 Score=40.22 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
...|+|+|+|+.|+.++..++..|.+ |++++.++
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~---vi~~~~~~ 61 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAE---TYVISRSS 61 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSS
T ss_pred CCEEEEECCCCcchhHHHHhhhcccc---ccccccch
Confidence 45799999999999999888888876 88999874
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.27 E-value=0.031 Score=47.67 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcE
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDV 216 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~V 216 (461)
+|+|||+|.+|+-+|..|++.|.+|
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSV 26 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred EEEEECchHHHHHHHHHHHHCCCCc
Confidence 6999999999999999999998653
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.2 Score=41.39 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~-G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.+++|+|+|| |..|...+.+|.++|++ |+++.|++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~---V~~~~R~~ 37 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYE---VTVLVRDS 37 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEEcCh
Confidence 3567999995 99999999999999986 99999874
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=88.97 E-value=1.2 Score=35.44 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=49.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
++++|+|+|+|-.+--++..|.+.+.+++++.|. .+-.+.+.+.+...+ .+..+..
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~---------~~~a~~l~~~~~~~~-------~~~~~~~-------- 72 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT---------FSKTKELAERFQPYG-------NIQAVSM-------- 72 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS---------HHHHHHHHHHHGGGS-------CEEEEEG--------
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccch---------HHHHHHHHHHHhhcc-------ccchhhh--------
Confidence 5789999999999999999999888999998874 333455555554432 1222222
Q ss_pred EEeCCCcEEecCEEEEccCCC
Q 012545 269 VKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.+....++|.+|-||..-
T Consensus 73 ---~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 73 ---DSIPLQTYDLVINATSAG 90 (171)
T ss_dssp ---GGCCCSCCSEEEECCCC-
T ss_pred ---ccccccccceeeeccccc
Confidence 111134689999998743
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.88 E-value=0.21 Score=39.73 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=29.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|+|+|+|+.|+.++..++..|.+ |+++++++
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~---Vi~~~~~~ 61 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLH---VAAIDIDD 61 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCc---cceecchh
Confidence 45799999999999999888887865 99998874
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=88.73 E-value=0.26 Score=38.54 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=31.1
Q ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 190 NGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 190 ~~~v~VvG-~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-++|.||| .|.+|.-+|..|.+.|.+|+++++..
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 57999999 69999999999999999999998754
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=88.61 E-value=0.24 Score=39.23 Aligned_cols=35 Identities=14% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
+.++++|||+|-.|-.+|..|...|.+. ++|+.|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~--i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRA--VLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSE--EEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcE--EEEEcCc
Confidence 3678999999999999999999998753 8888876
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.60 E-value=0.25 Score=35.46 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=32.9
Q ss_pred CCCCCCeEEEEcCChHHHHH-HHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYA-AREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~a-A~~L~~~g~~~~~V~vie~~~ 41 (461)
||...+++-+||-|=+|+++ |..|.++|+. |+--|...
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~---VsGSD~~~ 42 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQ---ISGSDIAD 42 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHTCE---EEEEESCC
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCCCE---EEEEeCCC
Confidence 46678899999999999999 8999999997 99888763
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.26 E-value=0.25 Score=39.78 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=29.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.-.|+|+|+|+.|+.++..++..|.+. |+++|.++
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~--Vi~~d~~~ 62 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGR--IIGVGSRP 62 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSC--EEEECCCH
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccc--cccccchh
Confidence 457999999999999998888888643 89999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.23 E-value=0.18 Score=40.85 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
-.|+|+|+|+.|+.++..++..|.+ +|++++.++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~ 63 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSP 63 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCH
T ss_pred CEEEEECCCccchhheecccccccc--ccccccccc
Confidence 5799999999999999888888863 389999875
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.69 Score=36.81 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
++++|+|+|+|-.+--++..|.+.|.+++++.|.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt 50 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 50 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence 5789999999999999999999999999988763
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.91 E-value=0.35 Score=37.56 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.6
Q ss_pred CeEEEEc-CChHHHHHHHHHHHc-CCCCCcEEEEeCC
Q 012545 6 FKYVILG-GGVSAGYAAREFAKQ-GVKPGELAIISKE 40 (461)
Q Consensus 6 ~dvvIIG-~G~aGl~aA~~L~~~-g~~~~~V~vie~~ 40 (461)
++|.||| +|..|.++|..|... +. ..++.++|..
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~ 36 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence 3899999 599999999888654 43 3469999865
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=87.87 E-value=0.25 Score=39.81 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=28.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
-.|+|+|+|+-|+.++..++..|.+. |++.|.++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~--Vi~~d~~~ 63 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASR--IIAIDING 63 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSE--EEEECSCG
T ss_pred CEEEEECCChHHHHHHHHHHHhCCce--eeeeccch
Confidence 57999999999999999999988653 77778764
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.87 E-value=0.3 Score=38.68 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.-+.++|||-|..|-.+|..++..|.+ |+++|.++
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~---V~v~e~dp 57 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGAR---VIITEIDP 57 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCe---eEeeeccc
Confidence 457899999999999999999999987 99999885
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=87.85 E-value=0.28 Score=38.66 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..-+.++|+|=|..|-.+|..|+..|.. |+|.|.+|.
T Consensus 21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~---V~V~E~DPi 57 (163)
T d1v8ba1 21 ISGKIVVICGYGDVGKGCASSMKGLGAR---VYITEIDPI 57 (163)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSCHH
T ss_pred ecCCEEEEecccccchhHHHHHHhCCCE---EEEEecCch
Confidence 3468999999999999999999999987 999999863
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.75 E-value=0.28 Score=38.88 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.+|+++|+|-|.+|-.+|..++.+|.+|++.+..
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d 56 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEID 56 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence 5899999999999999999999999999998763
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.70 E-value=0.24 Score=42.36 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+|+|||+|--|..+|..|++.|.+. ++|+|.+..
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~--i~lvD~D~V 65 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGN--LTLLDFDTV 65 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSE--EEEECCCBC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCe--EEEECCccc
Confidence 468999999999999999999999764 999998854
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=87.62 E-value=0.7 Score=39.86 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=42.5
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEE
Q 012545 190 NGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250 (461)
Q Consensus 190 ~~~v~VvG~-G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~ 250 (461)
.++|+|.|+ |++|-.++..|.+.|.+|+.+.|.+.... ..... .....+...+++++
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~-~~~~~~~~~~~~~~ 60 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKA-QLLESFKASGANIV 60 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHH-HHHHHHHTTTCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHH-HHHHhhccCCcEEE
Confidence 478999996 99999999999999999999998765443 22222 23355566777765
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.53 E-value=0.32 Score=45.83 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=53.9
Q ss_pred CCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec-CCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 226 MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+.+-..++.+.+-+...-.|..+++++.|.++..+ +++++..|.+++|+++.|+.||....+-|.
T Consensus 370 yp~YG~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~ 436 (491)
T d1vg0a1 370 FPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 436 (491)
T ss_dssp EETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred eecCCcchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence 333334588899989999999999999999999874 466788899999999999999998776554
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.46 E-value=0.53 Score=37.87 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=27.9
Q ss_pred cEEEE-CCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 192 KAVVV-GGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 192 ~v~Vv-G~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
+|+|+ |+|.+|..+|..|++.|.+|++..|.
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~ 33 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 57899 66999999999999999999998873
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=87.32 E-value=0.29 Score=44.44 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.++|||+|..|+-+|..|++.|.+|.++++.+.
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 479999999999999999999999999999853
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=87.28 E-value=0.27 Score=38.94 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=29.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|-|||-|.-|...|..|.+.|++ |.++++++
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~---V~~~d~~~ 33 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYS---LVVSDRNP 33 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCe---EEEEeCCc
Confidence 699999999999999999999987 99999874
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=87.09 E-value=0.38 Score=37.24 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=28.4
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 7 KYVILG-GGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 7 dvvIIG-~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
+|.||| +|..|.++|..|..+++ ..++.|+|-.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di~ 35 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIP 35 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCG
T ss_pred eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEecC
Confidence 799999 69999999999999876 4579999853
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=86.91 E-value=0.5 Score=33.22 Aligned_cols=74 Identities=26% Similarity=0.199 Sum_probs=50.6
Q ss_pred cEEEECCCHHHHH-HHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE
Q 012545 192 KAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 270 (461)
Q Consensus 192 ~v~VvG~G~~g~e-~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~ 270 (461)
++-++|=|-+|+- +|..|.+.|.+|+--++.+ .+ ..+.|++.|++++.+.....+
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~~-----~t~~L~~~Gi~i~~gh~~~~i------------ 58 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------TE-----RTAYLRKLGIPIFVPHSADNW------------ 58 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCCEESSCCTTSC------------
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------Ch-----hHHHHHHCCCeEEeeeccccc------------
Confidence 5778887666653 5899999999999876532 11 234589999999865432111
Q ss_pred eCCCcEEecCEEEEccCCCCChhhh
Q 012545 271 LKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 271 ~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
-.+|.||+..+...+.+.+
T Consensus 59 ------~~~d~vV~SsAI~~~npel 77 (89)
T d1j6ua1 59 ------YDPDLVIKTPAVRDDNPEI 77 (89)
T ss_dssp ------CCCSEEEECTTCCTTCHHH
T ss_pred ------CCCCEEEEecCcCCCCHHH
Confidence 2478999999877665443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.72 E-value=0.31 Score=38.63 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=29.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|-+||-|.-|...|..|.+.|++ |.++|+++
T Consensus 3 kIg~IGlG~MG~~iA~~L~~~g~~---v~~~d~~~ 34 (162)
T d3cuma2 3 QIAFIGLGHMGAPMATNLLKAGYL---LNVFDLVQ 34 (162)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCE---EEEECSSH
T ss_pred EEEEEEEHHHHHHHHHHHHHCCCe---EEEEECch
Confidence 699999999999999999999987 99999874
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=86.64 E-value=0.39 Score=38.60 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++|-|||-|.-|...|..|.+.|++ |.++++++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~---V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFK---VAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCe---EEEEECCH
Confidence 3799999999999999999999987 99999874
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=86.56 E-value=0.35 Score=42.24 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=31.0
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~-G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
++.+|+|+|| |..|...+.+|.++|++ |+++.+.+
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~---V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE---EEEEECCC
Confidence 4678999997 99999999999999987 99998864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=86.41 E-value=0.38 Score=38.11 Aligned_cols=31 Identities=32% Similarity=0.307 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
+|.|||.|..|.-+|..|.+.|.+|+.++|.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999999999999988763
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=86.27 E-value=0.21 Score=40.84 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=28.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
++|+|+|+|..|.-+|..|++.|.+|++..|
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r 38 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHM 38 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEe
Confidence 4799999999999999999999999999875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.20 E-value=0.33 Score=39.07 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=29.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
-.|+|+|+|+.|+.++..++..|.. +|+++|.++
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~--~Vi~vd~~~ 64 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLNK 64 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCc--eEEEecCcH
Confidence 4599999999999999999998854 399999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.08 E-value=0.39 Score=39.40 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=28.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.-+|+|+|+|+.|+.++..++..|.. +|+++|..+
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~~ 60 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNP 60 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred CCEEEEECcCHHHHHHHHHHHhhccc--ceeeecccc
Confidence 45899999999999999888877754 488888763
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.00 E-value=0.24 Score=41.85 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=26.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CcEEEEccC
Q 012545 192 KAVVVGGGYIGLELSAALKINN---IDVSMVYPE 222 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g---~~Vtli~~~ 222 (461)
+|+|||+|+.|+.+|..+++.+ .+|+++++.
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~ 36 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD 36 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence 7899999999999998777655 579999974
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=85.76 E-value=0.32 Score=39.06 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=27.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
.-+|+|+|+|+.|+.++..++..|.+. |.+.+.+
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~--v~~~~~~ 62 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASI--IIAVDIV 62 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSE--EEEEESC
T ss_pred CCEEEEeCCCHHHhhhhhcccccccce--eeeeccH
Confidence 357999999999999998888888762 5666765
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=85.71 E-value=0.97 Score=38.68 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=40.4
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEE
Q 012545 189 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 249 (461)
Q Consensus 189 ~~~~v~VvG~G-~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v 249 (461)
++|.++|.|++ -+|.++|..|++.|.+|.+..+ +++-.+.+.+.+++.|.++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r---------~~~~l~~~~~~~~~~g~~~ 56 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDM---------NREALEKAEASVREKGVEA 56 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---------CHHHHHHHHHHHHTTTSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC---------CHHHHHHHHHHHHhcCCcE
Confidence 57888888874 6999999999999999999876 3444556667777777654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.71 E-value=0.38 Score=38.29 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=27.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
...|+|+|+|+.|+.++..++..|.+ +++++..+
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~---~i~~~~~~ 64 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAH---VVAFTTSE 64 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSG
T ss_pred CCEEEEeccchHHHHHHHHhhccccc---chhhccch
Confidence 35799999999999999888887876 77787663
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=85.64 E-value=0.36 Score=37.69 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=28.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+|-|||.|..|...|..|++.|+. |+++++.+
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~---v~~~~~~~ 33 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVE---VVTSLEGR 33 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCE---EEECCTTC
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCe---EEEEcCch
Confidence 799999999999999999999886 88887664
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=85.60 E-value=0.5 Score=37.91 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+|-|||-|.-|...|..|.+.|++ |.++++++
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~---V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFV---VCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCC---EEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCe---EEEEcCCH
Confidence 35799999999999999999999997 99999885
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=85.51 E-value=0.33 Score=38.92 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=29.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|+|+|+|-++.+++..|.+.+. +|+|+.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~---~i~I~nR~~ 51 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQ---NIVLANRTF 51 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTC---EEEEEESSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCc---eeeeccchH
Confidence 35789999999999999999987443 499998883
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=85.27 E-value=0.67 Score=36.70 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=31.1
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 188 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 188 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.++++|+|+|+|.+|+-++..++..|.+|..+++.
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~ 59 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS 59 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence 36789999999999999999999999999888753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.27 E-value=0.43 Score=37.95 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
++++|+|+|+|.+|.-.+..++..|.+|..+++++.
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~ 62 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR 62 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence 688999999999999999998899999988877543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=85.22 E-value=0.82 Score=37.09 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=31.0
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 189 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 189 ~~~~v~VvG-~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
++|+++|.| +|-+|.++|..|.+.|.+|+++.|.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~ 56 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK 56 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence 688999998 5899999999999999999998874
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=85.21 E-value=0.44 Score=41.22 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~-G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+++|+|+|| |..|-..+..|.+.|++ |.++++++.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~---V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHP---TFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCe---EEEEECCCc
Confidence 3678999997 99999999999999987 999998753
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=85.08 E-value=0.4 Score=38.48 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=28.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
-.|+|+|+|+.|+.++..++..|... |+++|.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~--Vi~~d~~~ 62 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASR--IIGVGTHK 62 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSE--EEEECSCG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCce--eeccCChH
Confidence 46999999999999999999888643 88888764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.04 E-value=0.38 Score=39.66 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
+|.|+|.|++|+-+|..|++.|.+|+.++..
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 5899999999999999999999999998864
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.76 E-value=0.51 Score=42.52 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 2 AEKSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 2 m~~~~dvvIIG-~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|++.++|+|.| +|+-|-..+..|.++|++ |+++++..
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~---V~~~d~~~ 49 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGHY---VIASDWKK 49 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEeCCC
Confidence 55788999999 699999999999999886 99998764
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=84.53 E-value=0.73 Score=36.56 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE 222 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~ 222 (461)
+.++|+|+|+|-.+--++..|.+.|. +++++.|.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence 56799999999999999999999995 78888764
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.29 E-value=0.41 Score=38.65 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
+|.|+|+|..|.-+|..|++.|.+|++..|
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r 31 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence 589999999999999999999999998865
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=84.26 E-value=0.48 Score=37.80 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=28.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
-.|+|+|+|+.|+.++..++..+.. +|+.++..+
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~--~Vi~~~~~~ 63 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAK--RIIAVDLNP 63 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred CEEEEEecCCccchHHHHHHHHhhc--hheeecchH
Confidence 4588999999999999999988754 388888774
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=84.19 E-value=0.58 Score=38.98 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..++|+.|+|.||+..|..+.+.+.++ +.++|+...
T Consensus 26 d~riv~~GAGsAg~gia~~l~~~~~~~--i~~~D~~GL 61 (222)
T d1vl6a1 26 EVKVVVNGIGAAGYNIVKFLLDLGVKN--VVAVDRKGI 61 (222)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCE--EEEEETTEE
T ss_pred hcEEEEEChHHHHHHHHHHHHHhcccc--eEeecceeE
Confidence 568999999999999999999998764 999999743
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.10 E-value=0.39 Score=38.67 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=27.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|+|||+|-++-+++..|.+.+ +|+|+.|+.
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~----~i~I~nR~~ 50 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN----NIIIANRTV 50 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS----EEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc----ceeeehhhh
Confidence 4578999999999999888886644 499998873
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=84.04 E-value=0.67 Score=37.06 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=29.3
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcc
Q 012545 188 KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYP 221 (461)
Q Consensus 188 ~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~ 221 (461)
.++++|+|+|+|.+|+-.+..++..|. +|+.+++
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~ 60 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccc
Confidence 368899999999999999999999996 6777764
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.97 E-value=0.66 Score=37.43 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.++++.|+|.|.+|-++|..+...|.+|..+++.+
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCceEEEeccccccccceeeeeccccccccccccc
Confidence 47899999999999999999999999999987654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.48 E-value=0.9 Score=35.74 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=31.2
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 187 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 187 ~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
-.++++|+|+|+|.+|.-++..++..|.+|..+++.
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence 346789999999999999999999999999888653
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.41 E-value=0.56 Score=39.04 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=28.2
Q ss_pred CCeEEEEcCChHHHHHHHHHH--------------------HcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFA--------------------KQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~--------------------~~g~~~~~V~vie~~~ 41 (461)
.++|||||+|-.++=||..|. +.|.+ +|+++-+..
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~--~V~iv~RRg 93 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQ--EVVIVGRRG 93 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCC--EEEEECSSC
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCc--eEEEEEECC
Confidence 479999999999999999887 44544 488888774
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.10 E-value=0.49 Score=37.73 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=28.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
...|+|+|+|+.|+.++..++..|... |++++.++
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~~~--vv~~~~~~ 67 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTPAT--VIALDVKE 67 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCE--EEEEESSH
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcCcc--cccccchh
Confidence 357999999999999998888888653 77778764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=82.99 E-value=1.5 Score=37.41 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=41.3
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEE
Q 012545 189 KNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250 (461)
Q Consensus 189 ~~~~v~VvG~-G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~ 250 (461)
++|.++|.|+ +-+|.++|..|++.|.+|.+..|. .++..+.+.+.+++.|.+++
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~--------~~~~~~~~~~~~~~~g~~~~ 60 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS--------KEDEANSVLEEIKKVGGEAI 60 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC--------cHHHHHHHHHHHHhcCCcEE
Confidence 5677777775 579999999999999999988764 34455666777788887654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=82.98 E-value=1.6 Score=37.15 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=36.3
Q ss_pred CcEE-EECC-CHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEE
Q 012545 191 GKAV-VVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 249 (461)
Q Consensus 191 ~~v~-VvG~-G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v 249 (461)
|+|+ |.|+ +-+|..+|..|++.|.+|.+..| +++-.+.+.+.+++.|.++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r---------~~~~l~~~~~~i~~~g~~~ 52 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADY---------NDATAKAVASEINQAGGHA 52 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---------CHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEEC---------CHHHHHHHHHHHHhcCCcE
Confidence 4664 4465 46999999999999999998876 3344455666677777654
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=82.83 E-value=0.66 Score=34.83 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=31.6
Q ss_pred CCCcEEEECCCH-----------HHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 189 KNGKAVVVGGGY-----------IGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 189 ~~~~v~VvG~G~-----------~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
..++|+|+|+|+ .++.++.+|++.|.++.++..+|.-
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T 53 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT 53 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence 468999999985 5788999999999999999887654
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=82.64 E-value=0.2 Score=38.06 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=26.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~~ 42 (461)
++++|+|+|||-+|.+.+.++.+. +++ =|.++|.++.
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~--iv~fiDdd~~ 39 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFE--LRGFFDVDPE 39 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEE--EEEEEESCTT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcE--EEEEEeCchH
Confidence 467999999999999888766432 333 2677887753
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.52 E-value=0.72 Score=37.77 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=32.9
Q ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEccCCccCC
Q 012545 190 NGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPWCMP 227 (461)
Q Consensus 190 ~~~v~VvG-~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~ 227 (461)
-++|+|+| +|.+|..++..|.+.|.+|+.+.|.+.-++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~ 41 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP 41 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence 47899999 599999999999999999999998765443
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=82.49 E-value=0.52 Score=37.07 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
.+|+++|+|-|+.|--+|..++.+|.+|++.+.
T Consensus 22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~ 54 (163)
T d1v8ba1 22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEI 54 (163)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred cCCEEEEecccccchhHHHHHHhCCCEEEEEec
Confidence 589999999999999999999999999999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.45 E-value=0.58 Score=36.95 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=28.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
...|+|+|+|+.|+.++..+...|.+ |.+++.++
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~---v~~~~~~~ 61 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLN---VVAVDIGD 61 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCEEEEeecccchhhhhHHHhcCCCe---EeccCCCH
Confidence 45799999999999998888887765 88888764
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=82.38 E-value=0.57 Score=42.94 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCccC
Q 012545 192 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCM 226 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~ 226 (461)
.++|||+|..|+-+|..|++.+ .+|.++++.+...
T Consensus 26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~ 61 (391)
T d1gpea1 26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYES 61 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCT
T ss_pred eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCC
Confidence 5899999999999999999988 6999999987543
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.37 E-value=0.62 Score=39.06 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=30.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--------------------CCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ--------------------GVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~--------------------g~~~~~V~vie~~~~ 42 (461)
.++|+|||+|-.++=||..|.+. |.+ +|+++.+...
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~--~V~iv~RRg~ 94 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVK--TVWIVGRRGP 94 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCC--EEEEECSSCG
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCC--eEEEEEEcCh
Confidence 47999999999999999999883 544 5999998753
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=82.20 E-value=0.53 Score=41.33 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
-.|+|||+|..|+-+|..+++.| +|.++++.+.
T Consensus 8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~ 40 (305)
T d1chua2 8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPV 40 (305)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHhhcCC-CEEEEECCCC
Confidence 36999999999999999988877 8999998764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=82.02 E-value=0.93 Score=36.22 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=29.2
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 187 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 187 ~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
..++++|+|+|+|-++--++..|.+.| +|+++.|.
T Consensus 15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~ 49 (177)
T d1nvta1 15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT 49 (177)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence 346889999999999998888887766 88888773
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.88 E-value=1.6 Score=36.84 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=38.0
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEE
Q 012545 189 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 249 (461)
Q Consensus 189 ~~~~v~VvG~G-~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v 249 (461)
.+|.++|.|++ -+|.++|..|++.|.+|.+..|. ++-.+.+.+.+++.|.++
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~---------~~~l~~~~~~~~~~~~~~ 58 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN---------KHGLEETAAKCKGLGAKV 58 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence 46777777765 59999999999999999998763 333445555566666544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.65 E-value=1.1 Score=35.51 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=29.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcc
Q 012545 188 KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYP 221 (461)
Q Consensus 188 ~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~ 221 (461)
.++++|+|+|+|.+|+-++..++..|. +|+++++
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~ 59 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL 59 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccC
Confidence 367899999999999999999999998 6777765
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=81.64 E-value=0.83 Score=36.48 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.+|.+||-|..|..+|..|.+.|.+|++++|.+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 589999999999999999999999999988743
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=81.15 E-value=0.6 Score=37.53 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=29.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcc
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYP 221 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~ 221 (461)
++++|+|+|+|.+|.-++..++.+|. +|+.+++
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~ 61 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG 61 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred CCCEEEEECCCccchhheeccccccccccccccc
Confidence 57899999999999999999999997 6888765
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=80.90 E-value=0.95 Score=35.75 Aligned_cols=35 Identities=20% Similarity=0.035 Sum_probs=30.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 188 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 188 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.++++|+|+|+|.+|.-++..++.+|.++..+.+.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~ 63 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS 63 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence 36789999999999999999999999998877653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=80.74 E-value=2.2 Score=36.27 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=40.7
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEE
Q 012545 189 KNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 250 (461)
Q Consensus 189 ~~~~v~VvG~-G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~ 250 (461)
++|.++|.|+ +-+|.++|..|++.|.+|.+..|. ++-.+.+.+.+++.+..++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~---------~~~l~~~~~~~~~~~~~~~ 58 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN---------EKELDECLEIWREKGLNVE 58 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCCce
Confidence 5788999985 579999999999999999998863 3333445567777776653
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=80.44 E-value=0.59 Score=37.36 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=25.6
Q ss_pred CCeEEEEcCChHHHHHHHH--HHH-cCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAARE--FAK-QGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~--L~~-~g~~~~~V~vie~~~ 41 (461)
.+++.|||||..|.+.+.. |.+ ..+...+++++|.++
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~ 41 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE 41 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence 3589999999999775542 332 233334799999884
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=80.43 E-value=0.95 Score=37.00 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.+++|.|||-|.+|-++|..+..+|.+|...++.
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~ 75 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF 75 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence 4789999999999999999999999999887653
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=80.36 E-value=0.96 Score=36.64 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG-~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.+.++|.| +|-.|..+|..|++.|.+ |++++++.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~---V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAE---VVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccc---hhhcccch
Confidence 468899999 588999999999999987 99999984
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.22 E-value=0.81 Score=36.47 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=28.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..|+|+|+|..|++++..++..|.. +|.+++.++
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~--~Vi~~~~~~ 63 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAA--RIIGVDINK 63 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCc--eEEeecCcH
Confidence 4699999999999999999998754 388888774
|