Citrus Sinensis ID: 012548

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MGALTSNRKRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQVEELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEcccccccccccccHHHHccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHHHHHccccccEEEEcccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEcccHHHccccccccccHHHHHHHHHccccccccccccEEEEEEcccccEEEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccc
ccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEcccccEEEEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccEEEEcHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEEEEEEccEcHHHccccccccHHHHHHHHHHHHccccEEcccEEEEEEEcccEEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccc
mgaltsnrkrgdeylnyqipyqnlhiskrprfnytqqnqnqtlissnstvsrmsrypeakpplkrevhapcrtlkfgfadksnqafgskkangygenqnlgirMGNVLRYHLEKAKKSAFgafryfskdkevidadneqekvevisddssveeidaiedgregrslvfdprprgsdenekpvvdigeidgksaeernyhtnlqpssssvltdtnngdvSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQlwplkkpeeeqveelprepfipltkEEEAAVERAFSANWRAVLVSHTETGIDITGKIlqclrpgawlnDEVINVYLGLLKErekrepqkflkchffntffynklacgnkgydfraVKRWTSAKKLgygliecdkifvPIHKQIHWCLAVIDRKDKKFqyldslkgrdkkVLGDLARYFVEEVRDkcgkdidv
mgaltsnrkrgdeylNYQIPYQNLHISKRPRFNYTQQNQnqtlissnstvsrmSRYPEakpplkrevhAPCRTLKFGFADKSNQAfgskkangygenqnLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDkevidadneqekvevisddssveeidaiedgregrslvfdprprgsdenekpvvdiGEIDGKSAEERNyhtnlqpssssvltdtnnGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKqlwplkkpeeeqveelprepfiplTKEEEAAVERAFSANWRAVLVSHtetgiditgKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQyldslkgrdkkvlgdLARYFVeevrdkcgkdidv
MGALTSNRKRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWplkkpeeeqveelprepFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV
*************YLNYQIPYQNLHIS*******************************************CRTLKFGFA**************YGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDK*****************************************************************************************KMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPL************************AAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRD********
*********************************************************************************************************************************************************************************************************************************************************************************************************AAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGN**YDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDID*
********KRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKK*********PREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV
*********RGDEYLNYQIPYQNLH*************************S******EAKPPLKREVHAPCRTLKFGF************A*G***NQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDG********************************************S*SSVLTDTNNGDVSKMIDLL****EMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPL************REPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDK*******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
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MGALTSNRKRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQVEELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query461 2.2.26 [Sep-21-2011]
Q94F30489 Ubiquitin-like-specific p yes no 0.885 0.834 0.459 1e-105
Q8GYL3502 Ubiquitin-like-specific p no no 0.811 0.745 0.445 9e-88
O65278341 Putative ubiquitin-like-s no no 0.399 0.539 0.550 9e-55
O42957568 Ubiquitin-like-specific p yes no 0.414 0.336 0.366 2e-25
Q9HC62589 Sentrin-specific protease yes no 0.351 0.275 0.364 4e-22
Q5R7K7589 Sentrin-specific protease yes no 0.351 0.275 0.364 6e-22
P59110640 Sentrin-specific protease yes no 0.349 0.251 0.385 1e-21
Q91ZX6588 Sentrin-specific protease no no 0.286 0.224 0.394 1e-21
Q9P0U3644 Sentrin-specific protease no no 0.349 0.25 0.379 5e-21
Q5RBB1645 Sentrin-specific protease no no 0.349 0.249 0.379 6e-21
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1 Back     alignment and function desciption
 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/481 (45%), Positives = 289/481 (60%), Gaps = 73/481 (15%)

Query: 1   MGALTSNRKRGDEYLNY-----QIPYQN---LHISKRPRFNYTQQNQNQTLISSNSTVSR 52
           MGA+  NRKR DE  N+       P +N      SK+ RF++     +    SSN T+SR
Sbjct: 1   MGAVAINRKRSDESFNFINQQSTNPLRNSPYFQASKKRRFSFAMSEDSGKPASSNPTISR 60

Query: 53  MSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHL 112
           +SRYP+AK PL+RE+HAP R +           +G  K+N Y E         N      
Sbjct: 61  ISRYPDAKAPLRREIHAPSRGI---------LRYGKAKSNDYCEKD------ANFFVRKY 105

Query: 113 EKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRP 172
           + AK+SA  A R+ +K K+ +D  +E EK EV+SDDSSV+ I+ I+              
Sbjct: 106 DDAKRSALEALRFVNKGKDFVDLGDEVEKEEVVSDDSSVQAIEVID-------------- 151

Query: 173 RGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNG------DVSKMIDLLS 226
              D+ EK                    NLQPS SS +TD   G      D S M+D LS
Sbjct: 152 -CDDDEEK-------------------KNLQPSFSSGVTDVKKGENFRVEDTSMMLDSLS 191

Query: 227 L-----NGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQV 281
           L     N   +++ Y+KL+QS +KR SKL+ + FEI LNEK+ + L+Q  P  K  E++V
Sbjct: 192 LDRDVDNDASSLEAYRKLMQSAEKRNSKLEALGFEIVLNEKKLSLLRQSRP--KTVEKRV 249

Query: 282 EELPREPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEV 340
           E +PREPFIPLT++EEA V RAFS  N R VL +H  + IDITG++LQCL P AWLNDEV
Sbjct: 250 E-VPREPFIPLTEDEEAEVYRAFSGRNRRKVLATHENSNIDITGEVLQCLTPSAWLNDEV 308

Query: 341 INVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIE 400
           INVYL LLKERE REP+K+LKCH+FNTFFY KL   + GY+F+AV+RWT+ +KLGY LI+
Sbjct: 309 INVYLELLKERETREPKKYLKCHYFNTFFYKKLV-SDSGYNFKAVRRWTTQRKLGYALID 367

Query: 401 CDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDID 460
           CD IFVPIH+ +HW LAVI+ ++ K  YLDSL G D  +L  LA+Y  +E  +K GK ID
Sbjct: 368 CDMIFVPIHRGVHWTLAVINNRESKLLYLDSLNGVDPMILNALAKYMGDEANEKSGKKID 427

Query: 461 V 461
            
Sbjct: 428 A 428
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana GN=ULP1A PE=2 SV=2 Back     alignment and function description
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis thaliana GN=ULP1B PE=5 SV=2 Back     alignment and function description
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1 Back     alignment and function description
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3 Back     alignment and function description
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1 Back     alignment and function description
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1 Back     alignment and function description
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2 Back     alignment and function description
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
359477277528 PREDICTED: ubiquitin-like-specific prote 0.976 0.852 0.558 1e-133
255551763492 sentrin/sumo-specific protease, putative 0.906 0.849 0.527 1e-125
449460961501 PREDICTED: ubiquitin-like-specific prote 0.928 0.854 0.528 1e-125
224114894516 predicted protein [Populus trichocarpa] 0.947 0.846 0.542 1e-122
356519964512 PREDICTED: ubiquitin-like-specific prote 0.954 0.859 0.512 1e-118
224110442532 predicted protein [Populus trichocarpa] 0.941 0.815 0.551 1e-117
449524210425 PREDICTED: ubiquitin-like-specific prote 0.895 0.971 0.512 1e-114
356564595500 PREDICTED: ubiquitin-like-specific prote 0.930 0.858 0.507 1e-114
297736850556 unnamed protein product [Vitis vinifera] 0.859 0.712 0.511 1e-111
297804638499 hypothetical protein ARALYDRAFT_493298 [ 0.906 0.837 0.461 1e-104
>gi|359477277|ref|XP_002275739.2| PREDICTED: ubiquitin-like-specific protease ESD4-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 267/478 (55%), Positives = 339/478 (70%), Gaps = 28/478 (5%)

Query: 1   MGALTSNRKRGDE--YLNYQI--PY-QNL------HISKRPRFNYTQQNQNQTLISSNST 49
           MGALTSNRKRGDE   LN+    PY Q+L      HISK+PR +   Q  +   +SS ST
Sbjct: 1   MGALTSNRKRGDECFTLNHTFLSPYPQDLDRRIDSHISKKPRLSSMPQTPDPA-VSSRST 59

Query: 50  VSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLR 109
            SR+ RYPE    L+REVHAPCR +KFGFA  SN+     +     E   L   MGNVL 
Sbjct: 60  ASRIQRYPEPTAKLRREVHAPCRVVKFGFAASSNRE-SRLRIGEVDEKVGLSNVMGNVLS 118

Query: 110 YHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFD 169
              EKAK +A  A RYF KDKEVID  NE+ + ++ S+DSS+EEI+A+EDGREGRS+V D
Sbjct: 119 SQYEKAKNTAIQALRYFRKDKEVIDVGNERGE-DLASEDSSIEEIEAVEDGREGRSVVSD 177

Query: 170 PRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSL-- 227
            R RG+D    P  DI E+     E +N+   L  SSSS +T+ +N ++ KM+D L+L  
Sbjct: 178 ERSRGADGAAVP--DIQEL-----ETKNFDRRLWQSSSSGVTELSNVNL-KMLDSLTLRE 229

Query: 228 -NGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQV--EEL 284
            + E+ V  +KK L S +KR SKL+++  +I+  E + +SL  L P KKPEE +   +E+
Sbjct: 230 TDVELGVLPHKKWLDSAEKRNSKLRDLSVQIKFLEAQRSSLHALRPAKKPEEVKFNFQEV 289

Query: 285 PREPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINV 343
           PREPF+PLT+EEEA V+RA S+ N R VLV+H  + I+ITG+ILQCL+P AWLNDEVINV
Sbjct: 290 PREPFLPLTQEEEAEVDRALSSINRRKVLVTHEISNIEITGEILQCLQPTAWLNDEVINV 349

Query: 344 YLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDK 403
           YL LLKEREKREP+KFLKCHFFNTFFY KL  G   YD+++V+RWT+ +KLGY L ECDK
Sbjct: 350 YLELLKEREKREPKKFLKCHFFNTFFYKKLISGRNSYDYKSVRRWTTQRKLGYSLSECDK 409

Query: 404 IFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
           IFVPIH++IHWCLAVI+++DKKFQYLDSLKG D +VL  LARY+V+EV+DK  KDID+
Sbjct: 410 IFVPIHQEIHWCLAVINKQDKKFQYLDSLKGMDTRVLKVLARYYVDEVKDKSEKDIDL 467

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551763|ref|XP_002516927.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223544015|gb|EEF45541.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449460961|ref|XP_004148212.1| PREDICTED: ubiquitin-like-specific protease ESD4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224114894|ref|XP_002332256.1| predicted protein [Populus trichocarpa] gi|222832021|gb|EEE70498.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356519964|ref|XP_003528638.1| PREDICTED: ubiquitin-like-specific protease ESD4-like [Glycine max] Back     alignment and taxonomy information
>gi|224110442|ref|XP_002315520.1| predicted protein [Populus trichocarpa] gi|222864560|gb|EEF01691.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449524210|ref|XP_004169116.1| PREDICTED: ubiquitin-like-specific protease ESD4-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356564595|ref|XP_003550537.1| PREDICTED: ubiquitin-like-specific protease ESD4-like [Glycine max] Back     alignment and taxonomy information
>gi|297736850|emb|CBI26051.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297804638|ref|XP_002870203.1| hypothetical protein ARALYDRAFT_493298 [Arabidopsis lyrata subsp. lyrata] gi|297316039|gb|EFH46462.1| hypothetical protein ARALYDRAFT_493298 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
TAIR|locus:2130864489 ESD4 "EARLY IN SHORT DAYS 4" [ 0.661 0.623 0.471 5.5e-70
TAIR|locus:2077632502 ULP1A "UB-like protease 1A" [A 0.665 0.611 0.464 8.2e-67
DICTYBASE|DDB_G0292290769 DDB_G0292290 "Sentrin-specific 0.702 0.421 0.292 2.8e-29
POMBASE|SPBC19G7.09568 ulp1 "SUMO deconjugating enzym 0.281 0.228 0.430 5.1e-23
UNIPROTKB|J3KQD2413 SENP2 "Sentrin-specific protea 0.349 0.389 0.377 7.4e-22
RGD|1303230475 Senp18 "Sumo1/sentrin/SMT3 spe 0.340 0.330 0.386 1.6e-21
RGD|2324522475 LOC100362532 "Sumo1/sentrin/SM 0.340 0.330 0.386 1.6e-21
RGD|1303080475 Senp17 "Sumo1/sentrin/SMT3 spe 0.340 0.330 0.380 2.8e-21
UNIPROTKB|Q9P0U3644 SENP1 "Sentrin-specific protea 0.344 0.246 0.396 8.4e-21
UNIPROTKB|F1SGU9628 SENP1 "Uncharacterized protein 0.347 0.254 0.387 1.1e-20
TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 156/331 (47%), Positives = 207/331 (62%)

Query:   147 DDSSVEEIDAIEDGREGRSLV-----FDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTN 201
             DD+    ++A+    +G+  V      +     SD++    +++  ID    EE+    N
Sbjct:   106 DDAKRSALEALRFVNKGKDFVDLGDEVEKEEVVSDDSSVQAIEV--IDCDDDEEKK---N 160

Query:   202 LQPSSSSVLTDTNNG------DVSKMIDLLSL-----NGEMTVDVYKKLLQSVQKRGSKL 250
             LQPS SS +TD   G      D S M+D LSL     N   +++ Y+KL+QS +KR SKL
Sbjct:   161 LQPSFSSGVTDVKKGENFRVEDTSMMLDSLSLDRDVDNDASSLEAYRKLMQSAEKRNSKL 220

Query:   251 KEIEFEIELNEKRWASLKQLWXXXXXXXXXXXXXXXXXFIPLTKEEEAAVERAFSA-NWR 309
             + + FEI LNEK+ + L+Q                   FIPLT++EEA V RAFS  N R
Sbjct:   221 EALGFEIVLNEKKLSLLRQ---SRPKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRR 277

Query:   310 AVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFF 369
              VL +H  + IDITG++LQCL P AWLNDEVINVYL LLKERE REP+K+LKCH+FNTFF
Sbjct:   278 KVLATHENSNIDITGEVLQCLTPSAWLNDEVINVYLELLKERETREPKKYLKCHYFNTFF 337

Query:   370 YNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYL 429
             Y KL   + GY+F+AV+RWT+ +KLGY LI+CD IFVPIH+ +HW LAVI+ ++ K  YL
Sbjct:   338 YKKLV-SDSGYNFKAVRRWTTQRKLGYALIDCDMIFVPIHRGVHWTLAVINNRESKLLYL 396

Query:   430 DSLKGRDKKVLGDLARYFVEEVRDKCGKDID 460
             DSL G D  +L  LA+Y  +E  +K GK ID
Sbjct:   397 DSLNGVDPMILNALAKYMGDEANEKSGKKID 427
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
GO:0009909 "regulation of flower development" evidence=RCA;IMP
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0016929 "SUMO-specific protease activity" evidence=IDA
GO:0016926 "protein desumoylation" evidence=IDA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2077632 ULP1A "UB-like protease 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292290 DDB_G0292290 "Sentrin-specific protease 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC19G7.09 ulp1 "SUMO deconjugating enzyme Ulp1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|J3KQD2 SENP2 "Sentrin-specific protease 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1303230 Senp18 "Sumo1/sentrin/SMT3 specific peptidase 18" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|2324522 LOC100362532 "Sumo1/sentrin/SMT3 specific peptidase 18-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1303080 Senp17 "Sumo1/sentrin/SMT3 specific peptidase 17" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P0U3 SENP1 "Sentrin-specific protease 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGU9 SENP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94F30ESD4_ARATH3, ., 4, ., 2, 2, ., 6, 80.45940.88500.8343yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 0.0
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 4e-29
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 2e-20
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information 
 Score =  537 bits (1385), Expect = 0.0
 Identities = 265/475 (55%), Positives = 319/475 (67%), Gaps = 60/475 (12%)

Query: 1   MGALTSNRKRGDEYLNYQIPYQN---LHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYP 57
           MGALTSN KR DE  N   P  N    HISK+PRF+  Q   +    SSNST SR+SRYP
Sbjct: 1   MGALTSNHKRSDECFNN--PLSNSPDFHISKKPRFSMAQTPDSGNQHSSNSTASRISRYP 58

Query: 58  EAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKK 117
           E K PL+REVHAPCR LKFG  DKS      KK       Q LG  MGN L    + AK+
Sbjct: 59  EVKSPLRREVHAPCRILKFG-RDKSTD-SSEKK-------QGLGNVMGNFLSRKYDMAKR 109

Query: 118 SAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDE 177
           SA  A RY+ KDKEV+D  +E  KVE+ISDDSS+EE++A+E                   
Sbjct: 110 SALDALRYYRKDKEVVDVGDELGKVEMISDDSSIEEVEAVEM------------------ 151

Query: 178 NEKPVVDIGEIDGKSAEERNYHTNLQPS-SSSVLTDTNNG-----DVSKMIDLLSLNG-- 229
                      D    EE+     +    SS V   T NG     D SKM+D L LN   
Sbjct: 152 -----------DVDEVEEKA---EMGNGLSSDVKIVTKNGNLRVEDTSKMLDSLVLNRPE 197

Query: 230 --EMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQVEELPRE 287
              ++V+ Y+KLLQS ++R SKLK++ FEIELNEKR +SL+Q  P     +E VEE+PRE
Sbjct: 198 TDVLSVEAYRKLLQSAERRNSKLKDLGFEIELNEKRLSSLRQSRP---KPKEPVEEVPRE 254

Query: 288 PFIPLTKEEEAAVERAFSAN-WRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLG 346
           PFIPLT+EEE  V+RAFSAN  R VLV+H  + IDITG+IL+CL+PGAWLNDEVIN+YL 
Sbjct: 255 PFIPLTREEETEVKRAFSANNRRKVLVTHENSNIDITGEILRCLKPGAWLNDEVINLYLE 314

Query: 347 LLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFV 406
           LLKERE REP+KFLKCHFFNTFFY KL  G  GYD++AV+RWT+ KKLGY LI+CDKIFV
Sbjct: 315 LLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQKKLGYHLIDCDKIFV 374

Query: 407 PIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
           PIH++IHW LAVI++KD+KFQYLDSLKGRD K+L  LA+Y+V+EV+DK  KDIDV
Sbjct: 375 PIHQEIHWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSEKDIDV 429

Length = 490
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 99.97
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 99.86
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.68
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.09
PF03290 423 Peptidase_C57: Vaccinia virus I7 processing peptid 91.13
>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-115  Score=907.60  Aligned_cols=420  Identities=60%  Similarity=0.968  Sum_probs=382.4

Q ss_pred             CCcccccCCCCCccc-ccCCCCCCccccCCCCccccccccCc-ccCCccccccccccCCCCCCcccccccCCcccccccc
Q 012548            1 MGALTSNRKRGDEYL-NYQIPYQNLHISKRPRFNYTQQNQNQ-TLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGF   78 (461)
Q Consensus         1 m~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~yp~~~~~~~r~~hap~~~~~~~~   78 (461)
                      |||||||+||+++|+ |+++++|+|||||||||| |+|++.. ..+||||||||||||||+|+||||||||||||+||| 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (490)
T PLN03189          1 MGALTSNHKRSDECFNNPLSNSPDFHISKKPRFS-MAQTPDSGNQHSSNSTASRISRYPEVKSPLRREVHAPCRILKFG-   78 (490)
T ss_pred             CCcccccccccccccccccccCCccccccCCCcc-ccccccccCCccccccccchhcCCCccchhhhhhcCchhhhhcc-
Confidence            999999999999999 569999999999999999 5666622 128999999999999999999999999999999999 


Q ss_pred             cccccccccccccCCCCccc-cccchhhhHHHHHHHHHHHhHhhhccccccCceeeecCccccceeeeccCCchhhhhhh
Q 012548           79 ADKSNQAFGSKKANGYGENQ-NLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAI  157 (461)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  157 (461)
                               +.|+++++++. ++|++|||||++||++||+|||+|+||++|||||||||||.|++++|||||||||||||
T Consensus        79 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (490)
T PLN03189         79 ---------RDKSTDSSEKKQGLGNVMGNFLSRKYDMAKRSALDALRYYRKDKEVVDVGDELGKVEMISDDSSIEEVEAV  149 (490)
T ss_pred             ---------cccccchhhhhcchhhhHHHHhhhhhHHHHHHHHHHHHHHhcCCeeeecccccccceeccCccchhhhhee
Confidence                     99999999987 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCcccccCCCCCC-CCCCCCCccccccccccccccccccCCCCCCCccccccCCcccHHHhhhhcccCC----CcC
Q 012548          158 EDGREGRSLVFDPRPRG-SDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNG----EMT  232 (461)
Q Consensus       158 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~  232 (461)
                      |.+..+     +.+.++ +.+      ..+++..+     +.+|++           +|.++++||+||.|++    +++
T Consensus       150 ~~~~~~-----~~~~~~~~~~------~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  202 (490)
T PLN03189        150 EMDVDE-----VEEKAEMGNG------LSSDVKIV-----TKNGNL-----------RVEDTSKMLDSLVLNRPETDVLS  202 (490)
T ss_pred             ecccch-----hhhccccCcc------ccccceEe-----ecCCcc-----------cccchhhhhhceeecCccccccc
Confidence            944311     222222 222      22444444     789999           9999999999999998    899


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhcCCCCCCchhhhhcCCCCCCCCCCHHHHHHHHHHHcc-CCCce
Q 012548          233 VDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQVEELPREPFIPLTKEEEAAVERAFSA-NWRAV  311 (461)
Q Consensus       233 ~~~yk~~l~~~~~R~~~l~~~~~~~~l~Ekrr~~~~~~rp~k~p~~e~ve~v~~e~f~pLS~E~e~~V~~al~~-~~~~V  311 (461)
                      +++||++++++++|+.+|++|+++++++|++++++++.+|..+   |.+|++++++|+|||+||+.+|++||++ +..+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pLT~e~~~~V~~al~~~~~~~v  279 (490)
T PLN03189        203 VEAYRKLLQSAERRNSKLKDLGFEIELNEKRLSSLRQSRPKPK---EPVEEVPREPFIPLTREEETEVKRAFSANNRRKV  279 (490)
T ss_pred             cHHHHHHHHHHHhhcchhhhccceeehhhhHHHHHhhhccCcc---ccccccccccCcCCCHHHHHHHHHHhcCCCccce
Confidence            9999999999999999999999999999999999998888632   3458899999999999999999999998 44789


Q ss_pred             EeeccCCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEechhHHHhhhcCCCCCChhhHhhhhhc
Q 012548          312 LVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSA  391 (461)
Q Consensus       312 Lv~~~~~gI~It~~DL~~L~p~~WLNDeIINFYL~lL~er~~~ep~~~~kvh~FNSFFy~kL~~~k~g~~y~~VkRWTkr  391 (461)
                      |+++++++|+||++||.||.|++||||+||||||++|.++...+|...++||+||||||++|...+.+++|.+|+|||++
T Consensus       280 lvs~~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~h~FNTFFytkL~~~~~~ygY~~VrRWTk~  359 (490)
T PLN03189        280 LVTHENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQ  359 (490)
T ss_pred             eeecCCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccceEEEehHHHHHHhhcCCcCChHHHHHHhhh
Confidence            99998899999999999999999999999999999999987777777789999999999999987677899999999998


Q ss_pred             ccccCCccccceEEeeeccCCceeEEEeeeCCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhhhhCCCCCC
Q 012548          392 KKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV  461 (461)
Q Consensus       392 kKv~idLfekD~IfIPIN~gsHWsLaVI~~k~k~I~yyDSLgg~n~~vl~~L~~YL~~E~kdK~g~~~D~  461 (461)
                      ++++++||++|+||||||.+.||+|+||+++.++|+|||||++.+..+++.|++||.+|+++|++.+||+
T Consensus       360 kKigv~Lfs~D~IFIPIh~n~HWsLaVId~k~k~I~yyDSLgg~~~~vL~~L~rYL~~E~kdK~g~d~D~  429 (490)
T PLN03189        360 KKLGYHLIDCDKIFVPIHQEIHWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSEKDIDV  429 (490)
T ss_pred             cccccccccCceEEeeeecCCeeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcCCCcch
Confidence            8888899999999999999999999999999999999999999999999999999999999999988874

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 5e-23
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 1e-22
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 9e-21
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 1e-20
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 1e-20
2iyc_A226 Senp1 Native Structure Length = 226 2e-20
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 2e-20
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 2e-20
2hkp_A221 Sumo Protease Ulp1 With The Catalytic Cysteine Oxid 6e-16
1euv_A221 X-Ray Structure Of The C-Terminal Ulp1 Protease Dom 9e-16
3eay_A 323 Crystal Structure Of The Human Senp7 Catalytic Doma 6e-08
2oix_A186 Xanthomonas Xopd C470a Mutant Length = 186 9e-04
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 11/173 (6%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
            + LT++ E  +  A     +  ++S +   + IT   +Q L+   WLNDEVIN Y+ LL
Sbjct: 8   LLELTEDMEKEISNALGHGPQDEILS-SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLL 66
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
            ER K+  Q +   H F+TFFY KL  G     ++AVKRWT     G  L E + I VPI
Sbjct: 67  VERNKK--QGYPALHVFSTFFYPKLKSGG----YQAVKRWTK----GVNLFEQEIILVPI 116
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
           H+++HW L VID + K  +YLDS+  +  ++   L +Y  +E + K   D+++
Sbjct: 117 HRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNL 169
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221 Back     alignment and structure
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221 Back     alignment and structure
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure
>pdb|2OIX|A Chain A, Xanthomonas Xopd C470a Mutant Length = 186 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 1e-38
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 8e-36
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 2e-35
3eay_A 323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 2e-26
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 2e-22
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 2e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
 Score =  139 bits (350), Expect = 1e-38
 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 281 VEELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEV 340
           +     + F  +T+E E  ++  F    +  ++S     + IT K +Q L    WLNDE+
Sbjct: 6   IGSDSEDEFPEITEEMEKEIKNVFRNGNQDEVLSEA-FRLTITRKDIQTLNHLNWLNDEI 64

Query: 341 INVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIE 400
           IN Y+ +L ER K +       H FNTFF+ KL        ++AVKRWT    +      
Sbjct: 65  INFYMNMLMERSKEKGLP--SVHAFNTFFFTKLKTA----GYQAVKRWTKKVDVF----S 114

Query: 401 CDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDID 460
            D + VPIH  +HWCLAV+D + K   Y DS+ G + +    L +Y  +E  DK  K+ D
Sbjct: 115 VDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFD 174

Query: 461 V 461
            
Sbjct: 175 T 175
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 99.95
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 99.86
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
Probab=100.00  E-value=9.7e-37  Score=291.34  Aligned_cols=163  Identities=39%  Similarity=0.669  Sum_probs=148.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHcc-CCCceEeeccCCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEE
Q 012548          286 REPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHF  364 (461)
Q Consensus       286 ~e~f~pLS~E~e~~V~~al~~-~~~~VLv~~~~~gI~It~~DL~~L~p~~WLNDeIINFYL~lL~er~~~ep~~~~kvh~  364 (461)
                      ++.|+|||+|++++|++++.. ++++||+.+  +++.|+.+|+.||.+++||||+|||||+++|.++....  ..+++|+
T Consensus        11 ~~~~~~lt~e~~~~v~~~l~~~~~~~vl~~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~   86 (238)
T 2xph_A           11 EDEFPEITEEMEKEIKNVFRNGNQDEVLSEA--FRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSVHA   86 (238)
T ss_dssp             -CCCCCCCHHHHHHHHHHSSSSCTTCCCEEE--TTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCEEE
T ss_pred             ccCCCCCCHHHHHHHHHHHcCCChhheeecC--CCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCceee
Confidence            467999999999999999986 677888764  78999999999999999999999999999999876432  3578999


Q ss_pred             echhHHHhhhcCCCCCChhhHhhhhhcccccCCccccceEEeeeccCCceeEEEeeeCCCeEEEEcCCCCCCHHHHHHHH
Q 012548          365 FNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLA  444 (461)
Q Consensus       365 FNSFFy~kL~~~k~g~~y~~VkRWTkrkKv~idLfekD~IfIPIN~gsHWsLaVI~~k~k~I~yyDSLgg~n~~vl~~L~  444 (461)
                      ||||||++|...    +|..|++|+++    .++|++|+||||||.+.||+|+||+.+.++|+|||||++.+..+++.|+
T Consensus        87 f~sff~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~  158 (238)
T 2xph_A           87 FNTFFFTKLKTA----GYQAVKRWTKK----VDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILL  158 (238)
T ss_dssp             CCTTTTHHHHTT----CHHHHTTTTTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHH
T ss_pred             eecHHHHHhhhc----ccHHHHHHhcc----CCcccCCEEEEcccCCCceEEEEEEcccceEEEeecccCCCHHHHHHHH
Confidence            999999999987    89999999973    5799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhCCCCC
Q 012548          445 RYFVEEVRDKCGKDID  460 (461)
Q Consensus       445 ~YL~~E~kdK~g~~~D  460 (461)
                      +||..|+++|.|..+|
T Consensus       159 ~~L~~e~~~k~~~~~~  174 (238)
T 2xph_A          159 QYLKQESIDKKRKEFD  174 (238)
T ss_dssp             HHHHHHHHHHHCSCCC
T ss_pred             HHHHHHHHHhcCCCcC
Confidence            9999999999998765
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 461
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 3e-32
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 6e-32
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 9e-30
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 2e-22
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 3e-32
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 11/173 (6%)

Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
            + LT++ E  +  A     +  ++S     + IT   +Q L+   WLNDEVIN Y+ LL
Sbjct: 2   LLELTEDMEKEISNALGHGPQDEILSSAF-KLRITRGDIQTLKNYHWLNDEVINFYMNLL 60

Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
            ER K+  Q +   H F+TFFY KL    K   ++AVKRWT    L     E + I VPI
Sbjct: 61  VERNKK--QGYPALHVFSTFFYPKL----KSGGYQAVKRWTKGVNL----FEQEIILVPI 110

Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
           H+++HW L VID + K  +YLDS+  +  ++   L +Y  +E + K   D+++
Sbjct: 111 HRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNL 163
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 99.97
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 99.97
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 99.97
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 99.9
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.5e-31  Score=243.88  Aligned_cols=160  Identities=39%  Similarity=0.696  Sum_probs=146.1

Q ss_pred             CCCCCHHHHHHHHHHHcc-CCCceEeeccCCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEech
Q 012548          289 FIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT  367 (461)
Q Consensus       289 f~pLS~E~e~~V~~al~~-~~~~VLv~~~~~gI~It~~DL~~L~p~~WLNDeIINFYL~lL~er~~~ep~~~~kvh~FNS  367 (461)
                      |.+||+|++++|.+++.. +.+++++.  .+++.|+++|+.+|.+++||||+|||||+++|.++....  ...++|+|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~Dl~~L~~~~WLnD~iI~~y~~~l~~~~~~~--~~~~~~~~~~   77 (226)
T d1th0a_           2 LLELTEDMEKEISNALGHGPQDEILSS--AFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVFST   77 (226)
T ss_dssp             CCCCCHHHHHHHHHHHSSSCTTCEEEE--ETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEECCT
T ss_pred             cccCCHHHHHHHHHHhcCCCccceeee--cCCceeEHHHHHhcCCCcccccHHHHHHHHHHHHhhhhc--cCCceEEecH
Confidence            789999999999999987 66888886  479999999999999999999999999999998876432  3468999999


Q ss_pred             hHHHhhhcCCCCCChhhHhhhhhcccccCCccccceEEeeeccCCceeEEEeeeCCCeEEEEcCCCCCCHHHHHHHHHHH
Q 012548          368 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYF  447 (461)
Q Consensus       368 FFy~kL~~~k~g~~y~~VkRWTkrkKv~idLfekD~IfIPIN~gsHWsLaVI~~k~k~I~yyDSLgg~n~~vl~~L~~YL  447 (461)
                      |||++|...    +|..+++|++.    .+++++++||||||.+.||+|+||+++.++|.|||||++.+...+..++.||
T Consensus        78 ~f~~~l~~~----~~~~~~~~~~~----~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l  149 (226)
T d1th0a_          78 FFYPKLKSG----GYQAVKRWTKG----VNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYL  149 (226)
T ss_dssp             THHHHHHHH----TGGGTGGGGTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHhhc----cHHHHHHHHhc----cCcccCCEEEEeEEcCCceEEEEEEeccceEEEeccccCCChHHHHHHHHHH
Confidence            999999987    89999999974    5799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhCCCCC
Q 012548          448 VEEVRDKCGKDID  460 (461)
Q Consensus       448 ~~E~kdK~g~~~D  460 (461)
                      .++++.+.+...+
T Consensus       150 ~~~~~~~~~~~~~  162 (226)
T d1th0a_         150 QDESKTKRNSDLN  162 (226)
T ss_dssp             HHHHHHHTSCCCC
T ss_pred             HHHHHHhhCCCcC
Confidence            9999998876654
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure