Citrus Sinensis ID: 012549

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MEAANNTNGNGYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQTATSLAPPN
cccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccHHHHHHccccccccccHHHHHHHHccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccEEccccccccccHHHHHHHcccccccccHHHHHccccHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccEEEEEccccHHHHHHHHHHHHcccccccccccccccEEEEEccccccccccEEEEccccEEEEEEEccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEcccccccEEEEEEEEEEEcccccccccc
ccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccHHHHHHcccEEEHHHHHHHHHHHHccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccEEccccEccccccHHHcccccccccccccccHEEEcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEcccccccccEEEEEcccccccccEEEEEEcccEEEEEEEccccccccccccccccccccEccEEEEEccEEEEEEEEccccEEEEEccEEEEccccccccHHHHHHHHHHHHHHcccccc
meaanntngngygnnyecDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRlgdtkiqdmDACEMETLYTSLvplashadlepyiqriadgdtaslltqepitklslssgttegrqkyvpftkhssqTTLQIFRLAAAYrsrvypireggRILEFIYSSkqfktkggltagtatthyyaseefkikqektksftcspeevissgeykqsTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDvregslsssritlPKMRKAVLdtispkpylaSKIEVACKKLesldwfglvpklwpnakYVYSIMTGSMQHYLKKLRHYAgdlplvsadygsteswigvnvdpslppedvtfaviptfsyfefipihrrkqdcnsaiddfiedepvplsqvklgqEYEIVLTSFTGKSFISISikipismnrsfSCSILYVFFFFLQtatslappn
meaanntngngygnnyECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKkrlgdtkiqDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPitklslssgttegRQKYvpftkhssqttLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEefkikqektksfTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVRegslsssritlpKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQTATSLAPPN
MEAAnntngngygnnyECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFktkggltagtattHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLtsftgksfisisikipisMNRSFSCSILYVFFFFLQTATSLAPPN
**********GYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLT*******************YVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIK******FTCS*EEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQTA*******
*****************CDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLS*******QKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQTATS*****
********GNGYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQTATSLAPPN
**********GYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRR****NSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQTATSLA***
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MEAANNTNGNGYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQTATSLAPPN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query461 2.2.26 [Sep-21-2011]
Q6I581 581 Probable indole-3-acetic yes no 0.850 0.674 0.498 1e-115
Q5NAZ7462 Probable indole-3-acetic no no 0.880 0.878 0.471 1e-111
Q9SKE2 575 Jasmonic acid-amido synth no no 0.835 0.669 0.470 1e-108
Q53P49 613 Probable indole-3-acetic no no 0.845 0.636 0.434 1e-101
O81829 612 Indole-3-acetic acid-amid no no 0.845 0.637 0.357 1e-68
Q9LSQ4 612 Indole-3-acetic acid-amid no no 0.845 0.637 0.339 2e-64
Q8LQM5 610 Probable indole-3-acetic no no 0.872 0.659 0.334 1e-61
Q9LYU4 575 4-substituted benzoates-g no no 0.809 0.648 0.346 2e-61
Q9FZ87 609 Indole-3-acetic acid-amid no no 0.848 0.642 0.326 6e-61
Q60EJ6 629 Probable indole-3-acetic no no 0.828 0.607 0.331 4e-60
>sp|Q6I581|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1 Back     alignment and function desciption
 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/405 (49%), Positives = 283/405 (69%), Gaps = 13/405 (3%)

Query: 19  DIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVP 78
           + I  FE ++ +A  VQ++TL++ILE N   EYL+   G     D ++      Y S +P
Sbjct: 8   ETINEFEMLTRDAARVQKDTLKKILEINASAEYLQN-FGLGGRTDAES------YKSCIP 60

Query: 79  LASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFR 138
           L  H D+EPYIQRI DGDT+ ++T EPIT LSLSSGTT G+ K++PF     +TTLQI+R
Sbjct: 61  LCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQIYR 120

Query: 139 LAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFT 198
            + A+R+R YPI +G + L+F+Y SKQ  TKGG+ A TATT+ Y  + +K   +  +S  
Sbjct: 121 TSYAFRNREYPIGQG-KALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQC 179

Query: 199 CSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVR 258
           CSP+EVI   ++ QS YCHLL GL +S++V  + STFA+S+V AF  FEE W+D+C D+R
Sbjct: 180 CSPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIR 239

Query: 259 EGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYS 318
           +G LS  ++T P +R+AV   + P P LA  I   C  L   +W+G++P LWPNAKYVY 
Sbjct: 240 DGVLSK-KVTAPSIREAVSKILKPNPELADSIYKKCIGLS--NWYGVIPALWPNAKYVYG 296

Query: 319 IMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEF 378
           IMTGSM+ YLKKLRHYAG+LPL+SADYG++E W+G N+DP++PPE VT+AV+P   YFEF
Sbjct: 297 IMTGSMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEF 356

Query: 379 IPIHR--RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTG 421
           IP+ +   ++  NSA   +IE +PV L++V++G+ YE+V+T+F G
Sbjct: 357 IPLEKPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAG 401
May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q5NAZ7|GH33_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2 Back     alignment and function description
>sp|Q9SKE2|JAR1_ARATH Jasmonic acid-amido synthetase JAR1 OS=Arabidopsis thaliana GN=JAR1 PE=1 SV=2 Back     alignment and function description
>sp|Q53P49|GH312_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1 Back     alignment and function description
>sp|O81829|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSQ4|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1 Back     alignment and function description
>sp|Q8LQM5|GH31_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYU4|GH312_ARATH 4-substituted benzoates-glutamate ligase GH3.12 OS=Arabidopsis thaliana GN=GH3.12 PE=1 SV=1 Back     alignment and function description
>sp|Q9FZ87|GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1 Back     alignment and function description
>sp|Q60EJ6|GH34_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
255553847 600 Indole-3-acetic acid-amido synthetase GH 0.911 0.7 0.813 0.0
224127132 595 GH3 family protein [Populus trichocarpa] 0.898 0.695 0.798 0.0
346680625 590 indole-3-acetic acid-amido synthetase GH 0.882 0.689 0.799 0.0
225447231 592 PREDICTED: probable indole-3-acetic acid 0.900 0.701 0.788 0.0
118487591 595 unknown [Populus trichocarpa] 0.895 0.694 0.792 0.0
224124584 595 GH3 family protein [Populus trichocarpa] 0.895 0.694 0.787 0.0
356544912 613 PREDICTED: probable indole-3-acetic acid 0.872 0.655 0.786 0.0
356515202 611 PREDICTED: probable indole-3-acetic acid 0.872 0.657 0.769 0.0
356542133 653 PREDICTED: probable indole-3-acetic acid 0.895 0.632 0.747 0.0
356547024 599 PREDICTED: probable indole-3-acetic acid 0.889 0.684 0.736 1e-178
>gi|255553847|ref|XP_002517964.1| Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis] gi|223542946|gb|EEF44482.1| Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/424 (81%), Positives = 380/424 (89%), Gaps = 4/424 (0%)

Query: 1   MEAANNTNGNGYGNNYEC---DIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLG 57
           ME+ ++ + NG GNN  C   DIIRWF+ +SENAG+VQ  TLRRILE N  VEYLKK LG
Sbjct: 1   MESTSSPSSNGNGNNGHCSSYDIIRWFDDVSENAGKVQTGTLRRILELNCGVEYLKKWLG 60

Query: 58  DTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTE 117
           D KIQ+MDAC +E+LYTSLVPLASHADL+PYIQRIADGDT  LLTQ+PI  LSLSSGTTE
Sbjct: 61  DIKIQEMDACALESLYTSLVPLASHADLDPYIQRIADGDTTPLLTQQPIATLSLSSGTTE 120

Query: 118 GRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTA 177
           GRQKYVPFT+HSSQTTLQIF LAAAYRSRVYPI+EGG+ILE IYSSKQFKTKGGLT GTA
Sbjct: 121 GRQKYVPFTRHSSQTTLQIFSLAAAYRSRVYPIKEGGKILELIYSSKQFKTKGGLTVGTA 180

Query: 178 TTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAY 237
           TTHYYASEEFKIKQEKTKSFTCSP EVIS G+YKQ+TYCHLLLGLFF DQVEFITSTFAY
Sbjct: 181 TTHYYASEEFKIKQEKTKSFTCSPPEVISGGDYKQTTYCHLLLGLFFYDQVEFITSTFAY 240

Query: 238 SIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKL 297
           SIVQAF +FEE W++IC D+REGSL SSRITLPKMRKAVLD ISP P LAS+IE  CKKL
Sbjct: 241 SIVQAFISFEELWKEICDDIREGSL-SSRITLPKMRKAVLDIISPSPCLASRIEDNCKKL 299

Query: 298 ESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVD 357
           E+LDW GL+PKLWPNAKYVYSIMTGSMQ YL+KLRHYA  L LVSADYGSTESWIGVNVD
Sbjct: 300 ENLDWLGLIPKLWPNAKYVYSIMTGSMQPYLRKLRHYACGLALVSADYGSTESWIGVNVD 359

Query: 358 PSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLT 417
           PSLPPE+VTFAV+PTFSYFEF+P++R+ +D +SAIDDFIEDEPVPLS+VKLGQEYEIVLT
Sbjct: 360 PSLPPENVTFAVVPTFSYFEFMPLYRQNKDFSSAIDDFIEDEPVPLSKVKLGQEYEIVLT 419

Query: 418 SFTG 421
           +FTG
Sbjct: 420 TFTG 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224127132|ref|XP_002329408.1| GH3 family protein [Populus trichocarpa] gi|222870458|gb|EEF07589.1| GH3 family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|346680625|gb|AEO45116.1| indole-3-acetic acid-amido synthetase GH3.5 [Betula platyphylla] Back     alignment and taxonomy information
>gi|225447231|ref|XP_002272560.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Vitis vinifera] gi|297739258|emb|CBI28909.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|118487591|gb|ABK95621.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124584|ref|XP_002319368.1| GH3 family protein [Populus trichocarpa] gi|222857744|gb|EEE95291.1| GH3 family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356544912|ref|XP_003540891.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] Back     alignment and taxonomy information
>gi|356515202|ref|XP_003526290.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] Back     alignment and taxonomy information
>gi|356542133|ref|XP_003539525.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] Back     alignment and taxonomy information
>gi|356547024|ref|XP_003541918.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
TAIR|locus:2125571 591 DFL2 "DWARF IN LIGHT 2" [Arabi 0.861 0.671 0.717 7.4e-153
UNIPROTKB|Q6I581 581 GH3.5 "Probable indole-3-aceti 0.837 0.664 0.481 1.9e-99
UNIPROTKB|Q5NAZ7462 GH3.3 "Probable indole-3-aceti 0.828 0.826 0.467 1.1e-96
UNIPROTKB|Q53P49 613 GH3.12 "Probable indole-3-acet 0.835 0.628 0.413 3.4e-84
TAIR|locus:2131739 612 WES1 [Arabidopsis thaliana (ta 0.832 0.627 0.343 4.5e-59
TAIR|locus:2147314 612 DFL1 "DWARF IN LIGHT 1" [Arabi 0.835 0.629 0.326 1.4e-55
TAIR|locus:2010484 609 GH3.17 [Arabidopsis thaliana ( 0.837 0.633 0.310 4.9e-53
TAIR|locus:2008134 573 AT1G48660 "AT1G48660" [Arabido 0.800 0.643 0.328 1e-52
TAIR|locus:2043308 585 GH3.9 "AT2G47750" [Arabidopsis 0.832 0.656 0.330 4.4e-52
UNIPROTKB|Q8LQM5 610 GH3.1 "Probable indole-3-aceti 0.826 0.624 0.327 3.1e-51
TAIR|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1491 (529.9 bits), Expect = 7.4e-153, P = 7.4e-153
 Identities = 287/400 (71%), Positives = 331/400 (82%)

Query:    19 DIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVP 78
             D+I WFE++SENA +VQ ETLRRILE N  VEYL+K LG   ++ MD   +ETL+TSLVP
Sbjct:    10 DVIGWFEHVSENACKVQSETLRRILELNSGVEYLRKWLGTVDVEKMDDYTLETLFTSLVP 69

Query:    79 LASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFR 138
             + SHADL+PYIQRIADG+T+ LLTQEPIT LSLSSGTTEGRQKYVPFT+HS+QTTLQIFR
Sbjct:    70 IVSHADLDPYIQRIADGETSPLLTQEPITVLSLSSGTTEGRQKYVPFTRHSAQTTLQIFR 129

Query:   139 LAAAYRSRVYPIREGGRILEFIYSSKQFXXXXXXXXXXXXXHYYASEEFKIKQEKTKSFT 198
             L+AAYRSR YPIREGGRILEFIY+ K+F             HYYASEEFK KQE TKSFT
Sbjct:   130 LSAAYRSRFYPIREGGRILEFIYAGKEFKTLGGLTVGTATTHYYASEEFKTKQETTKSFT 189

Query:   199 CSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVR 258
             CSP+EVIS G++ Q TYCHLLLGL +S QVEF+ S F+Y+IVQAF+ FEE W++IC D++
Sbjct:   190 CSPQEVISGGDFGQCTYCHLLLGLHYSSQVEFVASAFSYTIVQAFSFFEEIWREICADIK 249

Query:   259 EGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLES-LDWFGLVPKLWPNAKYVY 317
             EG+LSS RITLPKMRKAVL  I P P LAS IE  C +LE+ L WFGL+ KLWPNAK++ 
Sbjct:   250 EGNLSS-RITLPKMRKAVLALIRPNPSLASHIEEICLELETNLGWFGLISKLWPNAKFIS 308

Query:   318 SIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFE 377
             SIMTGSM  YL KLRHYAG LPLVSADYGSTESWIGVNVDP LPPEDV+FAVIPTFSYFE
Sbjct:   309 SIMTGSMLPYLNKLRHYAGGLPLVSADYGSTESWIGVNVDPHLPPEDVSFAVIPTFSYFE 368

Query:   378 FIPIHRRKQDCNSAID-DFIEDEPVPLSQVKLGQEYEIVL 416
             FIP++RR+   +  ID DF+ED+PVPLSQVKLGQEYE+VL
Sbjct:   369 FIPLYRRQNQSDICIDGDFVEDKPVPLSQVKLGQEYELVL 408
GO:0005737 "cytoplasm" evidence=ISM
GO:0009733 "response to auxin stimulus" evidence=IEP;ISS
GO:0009416 "response to light stimulus" evidence=IEP
GO:0009507 "chloroplast" evidence=IDA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
UNIPROTKB|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q5NAZ7 GH3.3 "Probable indole-3-acetic acid-amido synthetase GH3.3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q53P49 GH3.12 "Probable indole-3-acetic acid-amido synthetase GH3.12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010484 GH3.17 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008134 AT1G48660 "AT1G48660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043308 GH3.9 "AT2G47750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LQM5 GH3.1 "Probable indole-3-acetic acid-amido synthetase GH3.1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
pfam03321 513 pfam03321, GH3, GH3 auxin-responsive promoter 1e-103
PLN02620 612 PLN02620, PLN02620, indole-3-acetic acid-amido syn 4e-82
PLN02247 606 PLN02247, PLN02247, indole-3-acetic acid-amido syn 3e-76
PLN02249 597 PLN02249, PLN02249, indole-3-acetic acid-amido syn 9e-65
>gnl|CDD|217492 pfam03321, GH3, GH3 auxin-responsive promoter Back     alignment and domain information 
 Score =  317 bits (815), Expect = e-103
 Identities = 140/410 (34%), Positives = 205/410 (50%), Gaps = 63/410 (15%)

Query: 19  DIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVP 78
            +++  E  + NA EVQ E LR ILE+N D EY KK  G + I   D       +   VP
Sbjct: 1   KVLKEIELFTSNAVEVQEEVLREILERNADTEYGKK-YGFSGITSYDD------FKKRVP 53

Query: 79  LASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFR 138
           + ++ DL+PYI+RIA+G+  S+L   PIT  +LSSGTT G+ K++P T    +    +  
Sbjct: 54  VVTYEDLKPYIERIANGEP-SILWPGPITYFALSSGTTGGKSKFIPVTDELLERFHFLGA 112

Query: 139 LAAA--YRSRVYPIRE---GGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEK 193
           LA    Y +   P          L   +   + KT GG+ AG  +T  Y +  F  K   
Sbjct: 113 LAVLLLYLNNNPPGLFFEGKSLGLGGSFVKPELKTPGGIPAGDLSTILYRNLPFWFK--- 169

Query: 194 TKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDI 253
                 SP+EVI   +  QS YC LL GL   + V  I+   A+ +V      E+ W+++
Sbjct: 170 ---LYTSPDEVILCIDDWQSKYCALLCGLI-REDVGRISGVPAWMLVLLIRFLEKHWKEL 225

Query: 254 CIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNA 313
           C D+R G+L                   P P LA  IE  C K+        + +LWPN 
Sbjct: 226 CTDIRTGTLR------------------PNPELADLIEQECSKI--------IKELWPNL 259

Query: 314 KYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTF 373
           KYV+    GSM+ Y  KL    G LPL S  Y ++E + G+N+D    PEDV++ ++P  
Sbjct: 260 KYVFVWGGGSMEPYRPKLEKLLGGLPLYSETYAASEGFFGINLD----PEDVSYTLMPNS 315

Query: 374 SYFEFIPIHRRKQDCNSAIDDFIEDEP--VPLSQVKLGQEYEIVLTSFTG 421
            +FEFIP           +D+  +++P  V L +V+LG+ YE+V+T+F G
Sbjct: 316 GFFEFIP-----------VDEDGDEDPKIVDLVEVELGKNYELVITTFAG 354

Length = 513
>gnl|CDD|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase Back     alignment and domain information
>gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase Back     alignment and domain information
>gnl|CDD|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
PLN02620 612 indole-3-acetic acid-amido synthetase 100.0
PLN02247 606 indole-3-acetic acid-amido synthetase 100.0
PLN02249 597 indole-3-acetic acid-amido synthetase 100.0
PF03321 528 GH3: GH3 auxin-responsive promoter; InterPro: IPR0 100.0
COG1541 438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 99.84
TIGR03335 445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 99.81
TIGR02304430 aden_form_hyp probable adenylate-forming enzyme. M 99.77
TIGR02155422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 99.71
PRK09274 552 peptide synthase; Provisional 97.91
PRK06334539 long chain fatty acid--[acyl-carrier-protein] liga 97.8
PF00501417 AMP-binding: AMP-binding enzyme; InterPro: IPR0008 97.73
PRK05677562 long-chain-fatty-acid--CoA ligase; Validated 97.72
PRK04813503 D-alanine--poly(phosphoribitol) ligase subunit 1; 97.71
PRK07529 632 AMP-binding domain protein; Validated 97.65
PRK06060 705 acyl-CoA synthetase; Validated 97.62
PRK13295547 cyclohexanecarboxylate-CoA ligase; Reviewed 97.6
PRK06187521 long-chain-fatty-acid--CoA ligase; Validated 97.59
TIGR01733408 AA-adenyl-dom amino acid adenylation domain. This 97.58
PRK07514504 malonyl-CoA synthase; Validated 97.54
TIGR03205541 pimA dicarboxylate--CoA ligase PimA. PimA, a membe 97.53
PRK07788549 acyl-CoA synthetase; Validated 97.52
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 97.5
PLN02574560 4-coumarate--CoA ligase-like 97.5
PRK06155 542 crotonobetaine/carnitine-CoA ligase; Provisional 97.46
PRK07638487 acyl-CoA synthetase; Validated 97.43
PRK00174637 acetyl-CoA synthetase; Provisional 97.41
TIGR01734502 D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig 97.39
PRK086331146 2-acyl-glycerophospho-ethanolamine acyltransferase 97.39
PRK07656513 long-chain-fatty-acid--CoA ligase; Validated 97.39
PRK05605573 long-chain-fatty-acid--CoA ligase; Validated 97.38
PRK06145497 acyl-CoA synthetase; Validated 97.37
PRK04319570 acetyl-CoA synthetase; Provisional 97.37
PRK06839496 acyl-CoA synthetase; Validated 97.36
PRK08316523 acyl-CoA synthetase; Validated 97.35
PRK07786 542 long-chain-fatty-acid--CoA ligase; Validated 97.35
PRK08180614 feruloyl-CoA synthase; Reviewed 97.33
TIGR02188625 Ac_CoA_lig_AcsA acetate--CoA ligase. This model de 97.31
PRK06164540 acyl-CoA synthetase; Validated 97.31
PRK05852534 acyl-CoA synthetase; Validated 97.3
PRK07867529 acyl-CoA synthetase; Validated 97.29
PRK09088488 acyl-CoA synthetase; Validated 97.28
PRK10946536 entE enterobactin synthase subunit E; Provisional 97.25
PRK12583558 acyl-CoA synthetase; Provisional 97.25
PRK07059557 Long-chain-fatty-acid--CoA ligase; Validated 97.24
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 97.24
PRK07470528 acyl-CoA synthetase; Validated 97.22
PLN02330546 4-coumarate--CoA ligase-like 1 97.21
PRK12467 3956 peptide synthase; Provisional 97.21
TIGR03098515 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor 97.21
PRK08974560 long-chain-fatty-acid--CoA ligase; Validated 97.2
PRK12467 3956 peptide synthase; Provisional 97.18
PLN02736651 long-chain acyl-CoA synthetase 97.16
PLN02860 563 o-succinylbenzoate-CoA ligase 97.11
PRK08279600 long-chain-acyl-CoA synthetase; Validated 97.11
TIGR02316628 propion_prpE propionate--CoA ligase. This family c 97.1
PRK10524629 prpE propionyl-CoA synthetase; Provisional 97.09
PRK13388540 acyl-CoA synthetase; Provisional 97.09
PRK08314546 long-chain-fatty-acid--CoA ligase; Validated 97.06
COG1022 613 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) 97.05
PRK12492562 long-chain-fatty-acid--CoA ligase; Provisional 97.05
PRK13382537 acyl-CoA synthetase; Provisional 97.05
TIGR03208538 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. 97.02
PLN02614666 long-chain acyl-CoA synthetase 97.0
PRK12316 5163 peptide synthase; Provisional 96.98
PRK12582624 acyl-CoA synthetase; Provisional 96.92
TIGR02275527 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot 96.92
PRK07787471 acyl-CoA synthetase; Validated 96.91
PTZ00237647 acetyl-CoA synthetase; Provisional 96.9
PRK12406509 long-chain-fatty-acid--CoA ligase; Provisional 96.9
PRK03640483 O-succinylbenzoic acid--CoA ligase; Provisional 96.89
PLN02861660 long-chain-fatty-acid-CoA ligase 96.84
PLN02387696 long-chain-fatty-acid-CoA ligase family protein 96.82
PRK08308414 acyl-CoA synthetase; Validated 96.82
COG1021542 EntE Peptide arylation enzymes [Secondary metaboli 96.78
PRK06710563 long-chain-fatty-acid--CoA ligase; Validated 96.77
PRK08315559 AMP-binding domain protein; Validated 96.76
PRK13383516 acyl-CoA synthetase; Provisional 96.75
PRK08751560 putative long-chain fatty acyl CoA ligase; Provisi 96.73
PRK12316 5163 peptide synthase; Provisional 96.73
PRK05857540 acyl-CoA synthetase; Validated 96.68
TIGR02262508 benz_CoA_lig benzoate-CoA ligase family. Character 96.66
PLN02246537 4-coumarate--CoA ligase 96.56
PRK05691 4334 peptide synthase; Validated 96.52
PTZ00342746 acyl-CoA synthetase; Provisional 96.5
PLN02654666 acetate-CoA ligase 96.47
COG0318534 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l 96.45
PLN02430660 long-chain-fatty-acid-CoA ligase 96.45
PRK05691 4334 peptide synthase; Validated 96.4
PRK06087547 short chain acyl-CoA synthetase; Reviewed 96.35
COG0365528 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l 96.32
PRK06188524 acyl-CoA synthetase; Validated 96.28
PF04443365 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR 96.2
PRK068141140 acylglycerophosphoethanolamine acyltransferase; Pr 96.0
PRK08008517 caiC putative crotonobetaine/carnitine-CoA ligase; 95.99
PTZ00216700 acyl-CoA synthetase; Provisional 95.93
PRK05620576 long-chain-fatty-acid--CoA ligase; Validated 95.9
PRK08043718 bifunctional acyl-[acyl carrier protein] synthetas 95.83
PRK07008539 long-chain-fatty-acid--CoA ligase; Validated 95.81
PRK08276502 long-chain-fatty-acid--CoA ligase; Validated 95.6
PRK03584655 acetoacetyl-CoA synthetase; Provisional 95.47
PRK07768545 long-chain-fatty-acid--CoA ligase; Validated 95.34
PRK06018 542 putative acyl-CoA synthetase; Provisional 94.97
KOG1180 678 consensus Acyl-CoA synthetase [Lipid transport and 94.27
PRK07868 994 acyl-CoA synthetase; Validated 89.16
KOG1179649 consensus Very long-chain acyl-CoA synthetase/fatt 88.37
KOG1256691 consensus Long-chain acyl-CoA synthetases (AMP-for 88.27
PRK13390501 acyl-CoA synthetase; Provisional 87.32
PRK13391511 acyl-CoA synthetase; Provisional 86.24
PRK07798533 acyl-CoA synthetase; Validated 85.91
PRK06178567 acyl-CoA synthetase; Validated 81.69
TIGR02372386 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv 81.46
>PLN02620 indole-3-acetic acid-amido synthetase Back     alignment and domain information 
Probab=100.00  E-value=3.6e-104  Score=845.74  Aligned_cols=430  Identities=32%  Similarity=0.573  Sum_probs=400.5

Q ss_pred             CcCCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHH
Q 012549           11 GYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQ   90 (461)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIe   90 (461)
                      +.+...+++.++.++..++|+.++|+++|++||++|++|+|||+|       +|++|+++++||++|||++|||++|||+
T Consensus        15 ~~~~~~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~-------~f~~i~~~~~F~~~VPv~~Yedl~pyI~   87 (612)
T PLN02620         15 YNLAEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRH-------GLNGRTDRETFKKVMPVITYEDIQPDIN   87 (612)
T ss_pred             CccccchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhc-------CCCCCCCHHHHHHhCCCccHHHhHHHHH
Confidence            445566688899999999999999999999999999999999999       9999999999999999999999999999


Q ss_pred             HHhcCCCCCcccCcccceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEEecCCccccC
Q 012549           91 RIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTK  169 (461)
Q Consensus        91 Ri~~Ge~~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~  169 (461)
                      ||++||.++|||++|+.+|++|||||+|++|+||+|+++++.++.++.+|+.++++.+| +. .||.+|+++...+.+|+
T Consensus        88 Ri~~Ge~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~-~Gk~~~~~~~~~~~~T~  166 (612)
T PLN02620         88 RIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLE-KGKGMYFLFIKSEAKTP  166 (612)
T ss_pred             HHHcCCCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcc-cCcEEEEEecccCccCC
Confidence            99999967999999999999999999889999999999999988889999999999888 77 89999999999999999


Q ss_pred             CCceeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHH
Q 012549          170 GGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEEC  249 (461)
Q Consensus       170 ~Gi~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~  249 (461)
                      +|||+|++|+.++++.+|+.++......|++|.+++.++|..+++||||||||.++++|..++++|+++|+.++++|+++
T Consensus       167 ~Gip~g~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~  246 (612)
T PLN02620        167 GGLVARPVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKH  246 (612)
T ss_pred             CCcccccccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHH
Confidence            99999999999999999998887777789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcccCCCCCCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHH
Q 012549          250 WQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLK  329 (461)
Q Consensus       250 w~~l~~dI~~Gt~~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~~~~y~~  329 (461)
                      |++||+||++|+++ .+++++.+|++|.+.++|||++|+.|+++|.+ +  +|.|++++|||||++|+||+||+|++|++
T Consensus       247 w~~L~~DI~~G~ls-~~itd~~~R~av~~~L~p~pelA~~i~~~c~~-~--~w~gii~rLWP~lk~I~~~~tGsm~~Y~p  322 (612)
T PLN02620        247 WTLLCRDIRTGTID-SQITDPSVREAVMKILKPDPKLADFVEAECRK-E--SWQGIITRLWPNTKYVDVIVTGTMSQYIP  322 (612)
T ss_pred             HHHHHHHHhcCCCC-ccCCCHHHHHHHHhhcCCCHHHHHHHHHHhcc-c--cccCcHHHhCCCCcEEEEECCCCHHHHHH
Confidence            99999999999999 88999999999999999999999999999998 5  89999999999999999999999999999


Q ss_pred             HHHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccC-----CCCCCCCCCCCcccccC
Q 012549          330 KLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQD-----CNSAIDDFIEDEPVPLS  404 (461)
Q Consensus       330 ~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~-----~~~~~~~~~~~~~l~l~  404 (461)
                      +|+.|+|++|+++.+|+||||+||||++|.|+++.++|+|+|+.+||||||+++.+..     .+...++.+++++|.++
T Consensus       323 ~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~  402 (612)
T PLN02620        323 TLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLV  402 (612)
T ss_pred             HHHHHcCCCccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHH
Confidence            9999999999999999999999999999999888889999999999999998853210     00001112457799999


Q ss_pred             CCcCCCeEEEEEeccCceeccccCCEEEecccccCCCceehhhHHhhcc
Q 012549          405 QVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQT  453 (461)
Q Consensus       405 Ele~G~~YelVvTt~~GLyRYriGDvV~v~g~~~~~cp~~~~~~~~~~~  453 (461)
                      |||+|++|||||||.+||||||+||||+|+|| +|+||.|+|++|-.++
T Consensus       403 ev~~G~~YelvvTt~~GLyRYrlGDvv~V~Gf-~n~~P~~~Fv~R~~~~  450 (612)
T PLN02620        403 DVKLGQEYELVVTTYAGLYRYRVGDVLRVAGF-KNKAPQFSFICRKNVV  450 (612)
T ss_pred             HccCCCeEEEEEEecCceEEEecCCEEEEeee-cCCCceEEEEeecCce
Confidence            99999999999999999999999999999999 8999999999996654

>PLN02247 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PLN02249 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information
>PRK09274 peptide synthase; Provisional Back     alignment and domain information
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] Back     alignment and domain information
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>PRK07529 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK06060 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR01733 AA-adenyl-dom amino acid adenylation domain Back     alignment and domain information
>PRK07514 malonyl-CoA synthase; Validated Back     alignment and domain information
>TIGR03205 pimA dicarboxylate--CoA ligase PimA Back     alignment and domain information
>PRK07788 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>PLN02574 4-coumarate--CoA ligase-like Back     alignment and domain information
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>PRK07638 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK00174 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06145 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK04319 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06839 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08316 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08180 feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase Back     alignment and domain information
>PRK06164 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05852 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07867 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK09088 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK10946 entE enterobactin synthase subunit E; Provisional Back     alignment and domain information
>PRK12583 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PRK07470 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02330 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated Back     alignment and domain information
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PLN02736 long-chain acyl-CoA synthetase Back     alignment and domain information
>PLN02860 o-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK08279 long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR02316 propion_prpE propionate--CoA ligase Back     alignment and domain information
>PRK10524 prpE propionyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK13388 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK13382 acyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>PLN02614 long-chain acyl-CoA synthetase Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK12582 acyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>PRK07787 acyl-CoA synthetase; Validated Back     alignment and domain information
>PTZ00237 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PLN02861 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PLN02387 long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>PRK08308 acyl-CoA synthetase; Validated Back     alignment and domain information
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08315 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK13383 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK05857 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family Back     alignment and domain information
>PLN02246 4-coumarate--CoA ligase Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PTZ00342 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02654 acetate-CoA ligase Back     alignment and domain information
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02430 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK06087 short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>PRK06188 acyl-CoA synthetase; Validated Back     alignment and domain information
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>PTZ00216 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK03584 acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06018 putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PRK07868 acyl-CoA synthetase; Validated Back     alignment and domain information
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] Back     alignment and domain information
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] Back     alignment and domain information
>PRK13390 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK13391 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07798 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06178 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
4epl_A 581 Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J 1e-103
4ewv_A 581 Crystal Structure Of Gh3.12 In Complex With Ampcpp 1e-56
4b2g_A 609 Crystal Structure Of An Indole-3-acetic Acid Amido 2e-54
4eq4_A 581 Crystal Structure Of Seleno-Methionine Derivatized 4e-54
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581 Back     alignment and structure 
Iteration: 1

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/397 (45%), Positives = 261/397 (65%), Gaps = 17/397 (4%)
Query: 20  IIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPL 79
           +I  F+ ++ NA +VQ++TL+ IL +N    YL+   G     + +A + E  + S+VPL
Sbjct: 19  VIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQN-CG----LNGNATDPEEAFKSMVPL 73
Query: 80  ASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRL 139
            +  +LEPYI+R+ DGDT+ +LT  P+  +SLSSGT++GR K++PFT    + TLQ+FR 
Sbjct: 74  VTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRT 133
Query: 140 AAAYRSRVYPIREGGRILEFIYSSKQFXXXXXXXXXXXXXHYYASEEFKIKQEKTKSFTC 199
           A A+R+R +PI + G+ L+FI+SSKQ+             + Y +  FK   +   S +C
Sbjct: 134 AFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSC 193
Query: 200 SPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVRE 259
           SP+EVI S +  Q+ YCHLL G+ F DQV+++ + FA+ +V AF  FE+ W++I  D+++
Sbjct: 194 SPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKD 253
Query: 260 GSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSI 319
           G L S+RIT+P +R A+   ++P P LA  I   C  L   +W+GL+P L+PNAKYVY I
Sbjct: 254 GVL-SNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLS--NWYGLIPALFPNAKYVYGI 310
Query: 320 MTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFI 379
           MTGSM+ Y+ KLRHYAGDLPLVS DYGS+E WI  NV P L PE+ TFAVIP   YFEF+
Sbjct: 311 MTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFL 370
Query: 380 PIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVL 416
           P+    +          E++PV L+QVK+G+EYE+V+
Sbjct: 371 PVSETGEG---------EEKPVGLTQVKIGEEYEVVI 398
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581 Back     alignment and structure
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609 Back     alignment and structure
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
4epl_A 581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 2e-87
4eql_A 581 4-substituted benzoates-glutamate ligase GH3.12; f 2e-73
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581 Back     alignment and structure
 Score =  277 bits (709), Expect = 2e-87
 Identities = 187/403 (46%), Positives = 270/403 (66%), Gaps = 19/403 (4%)

Query: 20  IIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKR-LGDTKIQDMDACEMETLYTSLVP 78
           +I  F+ ++ NA +VQ++TL+ IL +N    YL+   L        +A      + S+VP
Sbjct: 19  VIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA------FKSMVP 72

Query: 79  LASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFR 138
           L +  +LEPYI+R+ DGDT+ +LT  P+  +SLSSGT++GR K++PFT    + TLQ+FR
Sbjct: 73  LVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFR 132

Query: 139 LAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFT 198
            A A+R+R +PI + G+ L+FI+SSKQ+ + GG+  GTATT+ Y +  FK   +   S +
Sbjct: 133 TAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPS 192

Query: 199 CSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVR 258
           CSP+EVI S +  Q+ YCHLL G+ F DQV+++ + FA+ +V AF  FE+ W++I  D++
Sbjct: 193 CSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIK 252

Query: 259 EGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYS 318
           +G L S+RIT+P +R A+   ++P P LA  I   C  +   +W+GL+P L+PNAKYVY 
Sbjct: 253 DGVL-SNRITVPSVRTAMSKLLTPNPELAETIRTKC--MSLSNWYGLIPALFPNAKYVYG 309

Query: 319 IMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEF 378
           IMTGSM+ Y+ KLRHYAGDLPLVS DYGS+E WI  NV P L PE+ TFAVIP   YFEF
Sbjct: 310 IMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEF 369

Query: 379 IPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTG 421
           +P+               E++PV L+QVK+G+EYE+V+T++ G
Sbjct: 370 LPVSE---------TGEGEEKPVGLTQVKIGEEYEVVITNYAG 403
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
4epl_A 581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 100.0
4b2g_A 609 GH3-1 auxin conjugating enzyme; signaling protein, 100.0
4eql_A 581 4-substituted benzoates-glutamate ligase GH3.12; f 100.0
3qov_A 436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 99.62
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.58
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.58
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 99.43
3ivr_A509 Putative long-chain-fatty-acid COA ligase; structu 98.26
2d1s_A548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 98.12
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 98.07
3etc_A580 AMP-binding protein; adenylate-forming acyl-COA sy 98.04
3l8c_A 521 D-alanine--poly(phosphoribitol) ligase subunit 1; 98.0
3rix_A550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 97.98
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 97.96
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 97.95
3ni2_A536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 97.87
3fce_A 512 D-alanine--poly(phosphoribitol) ligase subunit 1; 97.86
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 97.81
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 97.8
3kxw_A590 Saframycin MX1 synthetase B; fatty acid AMP ligase 97.76
2v7b_A529 Benzoate-coenzyme A ligase; benzoate oxidation, be 97.7
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 97.7
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 97.68
3rg2_A 617 Enterobactin synthase component E (ENTE), 2,3-DIH 97.67
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 97.61
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 97.56
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 97.56
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 97.56
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 97.53
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 97.4
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 97.36
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 97.34
4gr5_A570 Non-ribosomal peptide synthetase; MBTH-like domain 97.28
4dg8_A620 PA1221; ANL superfamily, adenylation domain, pepti 97.22
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 97.18
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 97.13
4gs5_A358 Acyl-COA synthetase (AMP-forming)/AMP-acid ligase 97.09
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 97.08
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 96.39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.1e-101  Score=830.94  Aligned_cols=420  Identities=44%  Similarity=0.786  Sum_probs=388.8

Q ss_pred             CCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCC-cChH-HhhhcCCCcccccchHHHH
Q 012549           13 GNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDAC-EMET-LYTSLVPLASHADLEPYIQ   90 (461)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i-~s~e-dFr~~VPl~tYed~~pyIe   90 (461)
                      ..+.+++.++.|++.++|+.++|+++|++||++|++|+|||+|       ||++| ++++ |||++|||++|||++||||
T Consensus        12 ~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-------gf~~i~~~~e~dF~~~VPi~~Yedl~pyIe   84 (581)
T 4epl_A           12 ETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNC-------GLNGNATDPEEAFKSMVPLVTDVELEPYIK   84 (581)
T ss_dssp             -CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTT-------TCC----CHHHHHHHHSCCBCHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhc-------CCCcccCCHHHHHHHhCCCccHHHHHHHHH
Confidence            4567888999999999999999999999999999999999999       99999 9999 9999999999999999999


Q ss_pred             HHhcCCCCCcccCcccceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEEecCCccccC
Q 012549           91 RIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTK  169 (461)
Q Consensus        91 Ri~~Ge~~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~  169 (461)
                      ||++||.++|||++|+.+|++|||||+|++|+||+|+++++.+++++.+|+.++++ +| +...||.|++++++.+..|+
T Consensus        85 Ri~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~  163 (581)
T 4epl_A           85 RMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYIST  163 (581)
T ss_dssp             HHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECT
T ss_pred             HHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCC
Confidence            99999988999999999999999999999999999999999987777888777766 55 43258999988899999999


Q ss_pred             CCceeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHH
Q 012549          170 GGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEEC  249 (461)
Q Consensus       170 ~Gi~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~  249 (461)
                      +|+|+|++|++++++.+|+.+|.++...|++|.+++.++|..+++||||||||.++++|.+|+++|+++|+.+++.|+++
T Consensus       164 ~Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~  243 (581)
T 4epl_A          164 GGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQV  243 (581)
T ss_dssp             TSCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcccCCCCCCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHH
Q 012549          250 WQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLK  329 (461)
Q Consensus       250 w~~l~~dI~~Gt~~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~~~~y~~  329 (461)
                      |+++|+||++|+++ ++++++++|++++++++|+|++|++|+++|++.+  +|.|++++|||||++|.||++|+|++|++
T Consensus       244 We~l~~dI~~gtl~-~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~--~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~  320 (581)
T 4epl_A          244 WEEIVTDIKDGVLS-NRITVPSVRTAMSKLLTPNPELAETIRTKCMSLS--NWYGLIPALFPNAKYVYGIMTGSMEPYVP  320 (581)
T ss_dssp             HHHHHHHHHHTCCC-TTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSS--TTTTHHHHHCTTCCCEEEECSGGGGGGHH
T ss_pred             HHHHHHHHHhcCCC-cCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--ccccCHHHhCCCCceEEEEeCCChHHHHH
Confidence            99999999999999 8899999999999999999999999999999811  38999999999999999999999999999


Q ss_pred             HHHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcCC
Q 012549          330 KLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLG  409 (461)
Q Consensus       330 ~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G  409 (461)
                      +|++|+|++|+++++|+||||+||+|+++.++++.++|+|+|+.+||||||+++.++         +++++++++|||+|
T Consensus       321 ~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~---------~~~~~v~l~eve~G  391 (581)
T 4epl_A          321 KLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGE---------GEEKPVGLTQVKIG  391 (581)
T ss_dssp             HHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC----------------CCCEEGGGCCTT
T ss_pred             HHHHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccccC---------CCCceeeHHHcCCC
Confidence            999999999999999999999999999999998878999999999999999987653         56899999999999


Q ss_pred             CeEEEEEeccCceeccccCCEEEecccccCCCceehhhHHhhcc
Q 012549          410 QEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQT  453 (461)
Q Consensus       410 ~~YelVvTt~~GLyRYriGDvV~v~g~~~~~cp~~~~~~~~~~~  453 (461)
                      ++|||||||.+||||||+||+|+|+|+ ++++|.++|..|-.+.
T Consensus       392 ~~YelviTt~~GL~RYr~GD~v~v~g~-~~~~p~~~~~gR~~~~  434 (581)
T 4epl_A          392 EEYEVVITNYAGLYRYRLGDVVKVIGF-YNNTPQLKFICRRNLI  434 (581)
T ss_dssp             CEEEEEEESTTSCSSEEEEEEEEEEEE-ETTEEEEEEEEETTCC
T ss_pred             CeEEEEEeeccceeeEEcCCEEEEecc-cCCCcEEEEEeecCCe
Confidence            999999999999999999999999999 8899999998886654
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} Back     alignment and structure
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* Back     alignment and structure
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Back     alignment and structure
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Back     alignment and structure
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Back     alignment and structure
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
d1pg4a_643 Acetyl-CoA synthetase {Salmonella enterica [TaxId: 97.4
d1ry2a_640 Acetyl-CoA synthetase {Baker's yeast (Saccharomyce 95.91
d1lcia_541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 90.45
d1amua_514 Phenylalanine activating domain of gramicidin synt 90.08
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=97.40  E-value=0.00016  Score=75.89  Aligned_cols=24  Identities=29%  Similarity=0.235  Sum_probs=20.0

Q ss_pred             cceeecccCCCCCcccccccChhcH
Q 012549          106 ITKLSLSSGTTEGRQKYVPFTKHSS  130 (461)
Q Consensus       106 i~~f~~TSGTT~G~~K~IP~T~~~~  130 (461)
                      +.+...||||| |+||-|..|...+
T Consensus       254 ~a~IlyTSGTT-G~PKgV~~sh~~~  277 (643)
T d1pg4a_         254 PLFILYTSGST-GKPKGVLHTTGGY  277 (643)
T ss_dssp             EEEEEEECCSS-SSCEEEEEESHHH
T ss_pred             eEEEEeCCCcc-cCCCEEEEccHHH
Confidence            34778899999 9999999988743
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Back     information, alignment and structure