Citrus Sinensis ID: 012555

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MAKDKKRNDQISKEKKKKGLGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKKISDPSALEFSKWRRMWKSVLALW
cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHcHHcHHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccHHccccccccccccccccccHHccccccccccccccHHHHHHHHHccccccccccccccccEEEEccccccHcccccccHHHHHHHHHHHHcccccHEEccccHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHccEHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccHHHcccccHHHHHHHHHHHc
makdkkrndQISKEKkkkglgrgLWSVWAVIVVLFATAAVTTRTGSKIALfannqtschcssssqdsvkytgmvedcccdyetvdsvngevlHPLLQQLVTTPFFRYFKAklwcdcpfwpddgmcrlrdcsvcecpenefpepfkkpfhilpsddlmcqegkpeatvdrtldKRAFRgwietdnpwtnddetdngeMTYVNLLlnperytgytgpsarrIWDAVYtencpkwmaivpanpqtrpnppaktrplrwgknpelMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYleqaeydtgnheddLKTVSLMKQLlynpklqaacplpfdeaklwqgqsgpeLKQQIQEQFRNISALMDCVgcekcrlwgklqvLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKkisdpsaleFSKWRRMWKSVLALW
makdkkrndqiskekkkkglgrglwSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPeatvdrtldkrafrgwietdnpwtnddetdnGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAivpanpqtrpnppaktrplrwgknpeLMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEqaeydtgnhedDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKKisdpsalefskwrRMWKSVLALW
MAKDKKRNDQISkekkkkGLGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTschcssssqdsVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVcecpenefpepfkkpfHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKKISDPSALEFSKWRRMWKSVLALW
*******************LGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCS****DSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMC********VDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVP****************RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQG*******QQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSI**I*********ALEFSKWRRMWKSVLA**
***********************LWSVWAVIVVLFATAAVTTRTGSK************CS**SQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPF*******************************FRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWM************PPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEG********LQLQRNEVIALVNLLNRLSESVKIVHEMGPSIE***************SKWRRMWKSVLALW
********************GRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQ*************KYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKKISDPSALEFSKWRRMWKSVLALW
*************EKKKKGLGRGLWSVWAVIVVLFATAAVTTRTGSKIAL***NQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKK*******************TVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKKISDPSALEFSKWRRMWKSVLALW
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKDKKRNDQISKEKKKKGLGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKKISDPSALEFSKWRRMWKSVLALW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query461 2.2.26 [Sep-21-2011]
Q9C7S7469 Endoplasmic oxidoreductin yes no 0.893 0.878 0.684 1e-178
Q7X9I4472 Endoplasmic oxidoreductin no no 0.861 0.841 0.637 1e-156
Q6DD71465 ERO1-like protein alpha O N/A no 0.778 0.772 0.360 7e-60
B1H1F9474 ERO1-like protein alpha O no no 0.783 0.761 0.355 5e-58
A5PJN2468 ERO1-like protein alpha O yes no 0.757 0.745 0.350 3e-57
B6CVD7468 ERO1-like protein alpha O yes no 0.832 0.820 0.326 4e-57
Q8R4A1464 ERO1-like protein alpha O yes no 0.757 0.752 0.344 8e-57
Q8R180464 ERO1-like protein alpha O yes no 0.739 0.734 0.342 1e-56
Q96HE7468 ERO1-like protein alpha O yes no 0.757 0.745 0.350 1e-56
Q7T3D1489 ERO1-like protein alpha O yes no 0.741 0.699 0.334 2e-51
>sp|Q9C7S7|ERO1_ARATH Endoplasmic oxidoreductin-1 OS=Arabidopsis thaliana GN=AERO1 PE=1 SV=1 Back     alignment and function desciption
 Score =  625 bits (1613), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 304/444 (68%), Positives = 358/444 (80%), Gaps = 32/444 (7%)

Query: 41  TTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLV 100
           ++RT S +  F +++ SC CS   Q + KY GM+EDCCCDYETVD++N EVL+PLLQ LV
Sbjct: 35  SSRTNSNVGFFFSDRNSCSCSL--QKTGKYKGMIEDCCCDYETVDNLNTEVLNPLLQDLV 92

Query: 101 TTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPF-HILPSDDLMCQ 159
           TTPFFRY+K KLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPF   LPSDDL CQ
Sbjct: 93  TTPFFRYYKVKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFVPGLPSDDLKCQ 152

Query: 160 EGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARR 219
           EGKP+  VDRT+D RAFRGW+ET NPWT+DD+TD+GEM+YVNL LNPERYTGYTGPSARR
Sbjct: 153 EGKPQGAVDRTIDNRAFRGWVETKNPWTHDDDTDSGEMSYVNLQLNPERYTGYTGPSARR 212

Query: 220 IWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPL----------------------RWGK 257
           IWD++Y+ENCPK+     ++ +T P      + +                      +WG+
Sbjct: 213 IWDSIYSENCPKY-----SSGETCPEKKVLYKLISGLHSSISMHIAADYLLDESRNQWGQ 267

Query: 258 NPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQL 317
           N ELMYDR+LR+ DRVRN+YFT+LFVLRAVTKAT YLEQAEYDTGNH +DLKT SL+KQL
Sbjct: 268 NIELMYDRILRHPDRVRNMYFTYLFVLRAVTKATAYLEQAEYDTGNHAEDLKTQSLIKQL 327

Query: 318 LYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVL 377
           LY+PKLQ ACP+PFDEAKLWQGQSGPELKQQIQ+QFRNISALMDCVGCEKCRLWGKLQV 
Sbjct: 328 LYSPKLQTACPVPFDEAKLWQGQSGPELKQQIQKQFRNISALMDCVGCEKCRLWGKLQVQ 387

Query: 378 GLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEK 437
           GLGTALKILFSV  Q+   Q+ LQLQRNEVIALVNLLNRLSESVK+VH+M P +E++ME 
Sbjct: 388 GLGTALKILFSVGNQDIGDQT-LQLQRNEVIALVNLLNRLSESVKMVHDMSPDVERLMED 446

Query: 438 KISDPSALEFSKWRRMWKSVLALW 461
           +I+  SA + ++ RR+W   ++ W
Sbjct: 447 QIAKVSA-KPARLRRIWDLAVSFW 469
Essential oxidoreductase that oxidizes proteins in the endoplasmic reticulum to produce disulfide bonds. Acts by oxidizing directly PDI isomerase through a direct disulfide exchange. Does not act as a direct oxidant of folding substrate, but relies on PDI to transfer oxidizing equivalent. Does not oxidize all PDI related proteins, suggesting that it can discriminate between PDI and related proteins. Its reoxidation probably involves electron transfer to molecular oxygen via FAD. Acts independently of glutathione. May be responsible for a significant proportion of reactive oxygen species (ROS) in the cell, thereby being a source of oxidative stress.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: -
>sp|Q7X9I4|ERO2_ARATH Endoplasmic oxidoreductin-2 OS=Arabidopsis thaliana GN=AERO2 PE=1 SV=1 Back     alignment and function description
>sp|Q6DD71|ERO1A_XENLA ERO1-like protein alpha OS=Xenopus laevis GN=ero1l PE=2 SV=1 Back     alignment and function description
>sp|B1H1F9|ERO1A_XENTR ERO1-like protein alpha OS=Xenopus tropicalis GN=ero1l PE=2 SV=1 Back     alignment and function description
>sp|A5PJN2|ERO1A_BOVIN ERO1-like protein alpha OS=Bos taurus GN=ERO1L PE=2 SV=1 Back     alignment and function description
>sp|B6CVD7|ERO1A_PIG ERO1-like protein alpha OS=Sus scrofa GN=ERO1L PE=2 SV=1 Back     alignment and function description
>sp|Q8R4A1|ERO1A_RAT ERO1-like protein alpha OS=Rattus norvegicus GN=Ero1l PE=1 SV=1 Back     alignment and function description
>sp|Q8R180|ERO1A_MOUSE ERO1-like protein alpha OS=Mus musculus GN=Ero1l PE=1 SV=2 Back     alignment and function description
>sp|Q96HE7|ERO1A_HUMAN ERO1-like protein alpha OS=Homo sapiens GN=ERO1L PE=1 SV=2 Back     alignment and function description
>sp|Q7T3D1|ERO1A_DANRE ERO1-like protein alpha OS=Danio rerio GN=ero1l PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
224056607481 predicted protein [Populus trichocarpa] 0.967 0.927 0.712 0.0
224115326470 predicted protein [Populus trichocarpa] 0.954 0.936 0.712 0.0
297841969469 hypothetical protein ARALYDRAFT_476357 [ 0.893 0.878 0.691 1e-177
356530543465 PREDICTED: endoplasmic oxidoreductin-2-l 0.956 0.948 0.676 1e-177
15218421469 endoplasmic oxidoreductin-1 [Arabidopsis 0.893 0.878 0.684 1e-176
356556515465 PREDICTED: endoplasmic oxidoreductin-2-l 0.956 0.948 0.672 1e-176
359483898487 PREDICTED: endoplasmic oxidoreductin-1-l 0.926 0.876 0.673 1e-176
297740752499 unnamed protein product [Vitis vinifera] 0.926 0.855 0.673 1e-175
449530012458 PREDICTED: endoplasmic oxidoreductin-1-l 0.915 0.921 0.683 1e-174
147841803 589 hypothetical protein VITISV_002206 [Viti 0.889 0.696 0.677 1e-173
>gi|224056607|ref|XP_002298934.1| predicted protein [Populus trichocarpa] gi|222846192|gb|EEE83739.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/476 (71%), Positives = 378/476 (79%), Gaps = 30/476 (6%)

Query: 13  KEKKKKGLGRGLWSVW-------AVIVVLFATAAVTTRTGSKI-ALFANNQTSCHCSSSS 64
           K K++    R  WS W       AV++ + A   V+    SKI +L ++N  SC CSS+ 
Sbjct: 9   KPKQENKKERRKWSSWWLIGASLAVVLAVIAAGTVSPMNASKIGSLISSNYKSCQCSSAQ 68

Query: 65  QDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGM 124
               KY GM+EDCCCDYE+VDSVNGEVLHPLLQ+LVTTPFFRYFK KLWCDCPFWPDDGM
Sbjct: 69  --VRKYKGMIEDCCCDYESVDSVNGEVLHPLLQELVTTPFFRYFKVKLWCDCPFWPDDGM 126

Query: 125 CRLRDCSVCECPENEFPEPFKKPFHI-LPSDDLMCQEGKPEATVDRTLDKRAFRGWIETD 183
           CRLRDCSVCECPENEFPEPFKKPF   L +DDLMCQEGKP+A VDRTLD RAFRGWI TD
Sbjct: 127 CRLRDCSVCECPENEFPEPFKKPFRRGLSADDLMCQEGKPQAAVDRTLDSRAFRGWIVTD 186

Query: 184 NPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMA--------- 234
           NPWTNDDETDNGE+TYVNLLLNPERYTGY G SARRIWDAVY+ENCPK+ +         
Sbjct: 187 NPWTNDDETDNGELTYVNLLLNPERYTGYAGSSARRIWDAVYSENCPKYASGEICQEKKV 246

Query: 235 ---IVPANPQTRPNPPAKTRPL-----RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286
              ++     +     A    L     +WG+N ELMYDRVLRY DRVRNLYFTFLFVLRA
Sbjct: 247 LYKLISGLHSSISIHIAADYLLDESTNKWGQNLELMYDRVLRYPDRVRNLYFTFLFVLRA 306

Query: 287 VTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELK 346
           +TKA DYLEQAEYDTGN+ +DLKT SL++QLLYNPKLQAACPLPFDEAKLWQGQSGPELK
Sbjct: 307 MTKAADYLEQAEYDTGNNTEDLKTQSLVRQLLYNPKLQAACPLPFDEAKLWQGQSGPELK 366

Query: 347 QQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNE 406
           QQIQ+QFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSV+GQN  ++S  QLQRNE
Sbjct: 367 QQIQKQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVDGQNQPSESP-QLQRNE 425

Query: 407 VIALVNLLNRLSESVKIVHEMGPSIEKIMEKKISDPSALEF-SKWRRMWKSVLALW 461
           VIALVNLLNRLSESVK V E GPSIEKIME++ISD S  +  SKW+R  +S+  LW
Sbjct: 426 VIALVNLLNRLSESVKFVREQGPSIEKIMERQISDSSEPKHGSKWQRAGESLFQLW 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115326|ref|XP_002317004.1| predicted protein [Populus trichocarpa] gi|222860069|gb|EEE97616.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297841969|ref|XP_002888866.1| hypothetical protein ARALYDRAFT_476357 [Arabidopsis lyrata subsp. lyrata] gi|297334707|gb|EFH65125.1| hypothetical protein ARALYDRAFT_476357 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356530543|ref|XP_003533840.1| PREDICTED: endoplasmic oxidoreductin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|15218421|ref|NP_177372.1| endoplasmic oxidoreductin-1 [Arabidopsis thaliana] gi|50400631|sp|Q9C7S7.1|ERO1_ARATH RecName: Full=Endoplasmic oxidoreductin-1; Flags: Precursor gi|12323665|gb|AAG51798.1|AC067754_14 disulfide bond formation protein, putative; 78451-75984 [Arabidopsis thaliana] gi|31711714|gb|AAP68213.1| At1g72280 [Arabidopsis thaliana] gi|110743908|dbj|BAE99788.1| like disulfide bond formation protein [Arabidopsis thaliana] gi|332197177|gb|AEE35298.1| endoplasmic oxidoreductin-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356556515|ref|XP_003546570.1| PREDICTED: endoplasmic oxidoreductin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|359483898|ref|XP_002271644.2| PREDICTED: endoplasmic oxidoreductin-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740752|emb|CBI30934.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449530012|ref|XP_004171991.1| PREDICTED: endoplasmic oxidoreductin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147841803|emb|CAN62205.1| hypothetical protein VITISV_002206 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
TAIR|locus:2207031469 ERO1 "endoplasmic reticulum ox 0.446 0.439 0.754 7.9e-157
ZFIN|ZDB-GENE-060929-744488 zgc:153032 "zgc:153032" [Danio 0.327 0.309 0.438 1.5e-60
UNIPROTKB|E1C917467 ERO1LB "Uncharacterized protei 0.360 0.355 0.420 3.3e-59
MGI|MGI:1914725467 Ero1lb "ERO1-like beta (S. cer 0.321 0.316 0.465 4.8e-58
RGD|621713464 Ero1l "ERO1-like (S. cerevisia 0.360 0.357 0.404 2.3e-57
UNIPROTKB|F8WFP9464 Ero1l "ERO1-like protein alpha 0.360 0.357 0.404 2.3e-57
UNIPROTKB|Q86YB8467 ERO1LB "ERO1-like protein beta 0.321 0.316 0.452 3.3e-57
UNIPROTKB|A5PJN2468 ERO1L "ERO1-like protein alpha 0.360 0.354 0.404 3.8e-57
MGI|MGI:1354385464 Ero1l "ERO1-like (S. cerevisia 0.360 0.357 0.404 6e-57
UNIPROTKB|F1Q091467 ERO1LB "Uncharacterized protei 0.321 0.316 0.452 6.9e-57
TAIR|locus:2207031 ERO1 "endoplasmic reticulum oxidoreductins 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 818 (293.0 bits), Expect = 7.9e-157, Sum P(2) = 7.9e-157
 Identities = 157/208 (75%), Positives = 182/208 (87%)

Query:   254 RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSL 313
             +WG+N ELMYDR+LR+ DRVRN+YFT+LFVLRAVTKAT YLEQAEYDTGNH +DLKT SL
Sbjct:   264 QWGQNIELMYDRILRHPDRVRNMYFTYLFVLRAVTKATAYLEQAEYDTGNHAEDLKTQSL 323

Query:   314 MKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGK 373
             +KQLLY+PKLQ ACP+PFDEAKLWQGQSGPELKQQIQ+QFRNISALMDCVGCEKCRLWGK
Sbjct:   324 IKQLLYSPKLQTACPVPFDEAKLWQGQSGPELKQQIQKQFRNISALMDCVGCEKCRLWGK 383

Query:   374 LQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEK 433
             LQV GLGTALKILFSV  Q+   Q+ LQLQRNEVIALVNLLNRLSESVK+VH+M P +E+
Sbjct:   384 LQVQGLGTALKILFSVGNQDIGDQT-LQLQRNEVIALVNLLNRLSESVKMVHDMSPDVER 442

Query:   434 IMEKKISDPSALEFSKWRRMWKSVLALW 461
             +ME +I+  SA   ++ RR+W   ++ W
Sbjct:   443 LMEDQIAKVSAKP-ARLRRIWDLAVSFW 469
GO:0003756 "protein disulfide isomerase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005789 "endoplasmic reticulum membrane" evidence=IEA
GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0006984 "ER-nucleus signaling pathway" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
ZFIN|ZDB-GENE-060929-744 zgc:153032 "zgc:153032" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C917 ERO1LB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1914725 Ero1lb "ERO1-like beta (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621713 Ero1l "ERO1-like (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F8WFP9 Ero1l "ERO1-like protein alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q86YB8 ERO1LB "ERO1-like protein beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A5PJN2 ERO1L "ERO1-like protein alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1354385 Ero1l "ERO1-like (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q091 ERO1LB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C7S7ERO1_ARATH1, ., 8, ., 4, ., -0.68460.89370.8784yesno
B6CVD7ERO1A_PIG1, ., 8, ., 4, ., -0.32680.83290.8205yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.8.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
pfam04137348 pfam04137, ERO1, Endoplasmic Reticulum Oxidoreduct 1e-137
COG5061425 COG5061, ERO1, Oxidoreductin, endoplasmic reticulu 2e-52
>gnl|CDD|217920 pfam04137, ERO1, Endoplasmic Reticulum Oxidoreductin 1 (ERO1) Back     alignment and domain information 
 Score =  397 bits (1021), Expect = e-137
 Identities = 154/367 (41%), Positives = 208/367 (56%), Gaps = 50/367 (13%)

Query: 90  EVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDD-GMCRLRDCSVCECPENEFPEPFKKPF 148
           E + PLL  L +T FFRYFK  L  +CPFWPDD G+C  R C+VC C E+E PE +K   
Sbjct: 1   EKIRPLLNSLTSTDFFRYFKVNLDKECPFWPDDNGLCGSRACAVCTCDESEIPEVWKPS- 59

Query: 149 HILPSDDLMCQEGKPEATVDRTLDK-RAFRGWIETDNP--WTNDDETDNGEMTYVNLLLN 205
                +   C+EGK    +D +L   RA   W +TD+   +   D+ D+ +  YV+LLLN
Sbjct: 60  ---ELEGSACKEGKDFGELDCSLSDCRASCKWKDTDDLDDYCVVDDEDSDKGVYVDLLLN 116

Query: 206 PERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPA----------------- 248
           PER+TGY GPSA RIW A+Y ENC          P  + +                    
Sbjct: 117 PERFTGYKGPSAARIWRAIYEENCF---------PIGKVDNTCCLEKRVFYRLISGLHAS 167

Query: 249 ----------KTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAE 298
                       +  +WG N EL ++RV  + DR+RNLYFT+  VLRA+ K   YLE   
Sbjct: 168 ISTHLSADYLNDKTGKWGPNLELFFERVGNHPDRLRNLYFTYALVLRALAKLKPYLENFT 227

Query: 299 YDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISA 358
           ++TGN  +D +T  L+K LL   +L ++ P  FDE  L++     +LK++ + +FRNIS 
Sbjct: 228 FNTGNDLEDTETKLLLKDLLS--ELNSSSPKHFDENLLFKNDEAIKLKEEFRRRFRNISR 285

Query: 359 LMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLS 418
           +MDCVGCEKCRLWGKLQ  GLGTALKILF  + + H     L+L RNE++AL N  +RLS
Sbjct: 286 IMDCVGCEKCRLWGKLQTNGLGTALKILFEDDNKQHI----LKLTRNELVALFNTFDRLS 341

Query: 419 ESVKIVH 425
            S+  + 
Sbjct: 342 SSILAIE 348

Members of this family are required for the formation of disulphide bonds in the ER. Length = 348
>gnl|CDD|227393 COG5061, ERO1, Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
KOG2608469 consensus Endoplasmic reticulum membrane-associate 100.0
PF04137357 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 100.0
COG5061425 ERO1 Oxidoreductin, endoplasmic reticulum membrane 100.0
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-135  Score=1039.92  Aligned_cols=399  Identities=46%  Similarity=0.817  Sum_probs=362.7

Q ss_pred             cchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccCcccchhhhhhhhhchhhHHhHHhhc
Q 012555           22 RGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVT  101 (461)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~vdDc~c~~etId~~N~~~l~P~L~~L~~  101 (461)
                      ||.|+++++.+|.+++ .++       +-|..  ..|||+        +.|+|+||+|+|+|||++|+++|+|+|+.|++
T Consensus         3 r~~~l~~l~~~~~l~~-~v~-------~~~~~--~~~~ck--------~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~k   64 (469)
T KOG2608|consen    3 RAIALLGLIAAVKLIS-VVN-------TQFAS--SICFCK--------VDGIIEDCTCDYETIDNLNNEVIYPLLQKLLK   64 (469)
T ss_pred             hhHHHHHHHHHHHHHH-hcc-------ccccc--cceeee--------cccccccCCCCHHHHHHhhccccchHHHHHhc
Confidence            4788777777777776 344       22222  689999        77999999999999999999999999999999


Q ss_pred             CCCceEEeccCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CccccccCCC-CcccccccchhhhcCc
Q 012555          102 TPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPS-DDLMCQEGKP-EATVDRTLDKRAFRGW  179 (461)
Q Consensus       102 t~fFRyfKVnL~~~CPFW~dd~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~-~~~~c~~~~~-~~~vd~tl~~~~~~~w  179 (461)
                      +||||||||||+++||||+||++|++++|+|++|+|+|||++||++.+++++ .-..|+++++ ++++|++++.++|..|
T Consensus        65 sdffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~w  144 (469)
T KOG2608|consen   65 SDFFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKSLGKYEPELCSECEDADSELGAKDRTLSDRAFLLW  144 (469)
T ss_pred             ccchhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhhhhccChhhhhhhhhccccccchhccccccccccc
Confidence            9999999999999999999999999999999999999999999997666655 2345655666 7899999999999999


Q ss_pred             cccCCC-CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCC------C------CCCC--------
Q 012555          180 IETDNP-WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWM------A------IVPA--------  238 (461)
Q Consensus       180 ~~~d~~-~~~dDe~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~------~------~~~C--------  238 (461)
                      ..+|+. ||.+|+.++++++||||++||||||||+|++|+|||++||+||||++.      .      .++|        
T Consensus       145 ~~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfYr  224 (469)
T KOG2608|consen  145 DKHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFYR  224 (469)
T ss_pred             cccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHHH
Confidence            999998 899888888999999999999999999999999999999999999875      1      3677        


Q ss_pred             ----CCCCcCCCCCCC----CCC-CCCCChHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCchhcHH
Q 012555          239 ----NPQTRPNPPAKT----RPL-RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLK  309 (461)
Q Consensus       239 ----LHaSIsiHl~~~----~~~-~wgpNl~~F~~Rv~~~PeRl~NLYF~Yl~vLRAl~Ka~p~L~~~~f~tG~~~eD~~  309 (461)
                          |||||+||||++    .++ .||||+++|+.||++||+||+||||+|++|+|||.||+|||++.+|+||+..||.+
T Consensus       225 LISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~pyl~~~~~~tgn~~eD~e  304 (469)
T KOG2608|consen  225 LISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAPYLEELDFYTGNVEEDAE  304 (469)
T ss_pred             HHHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcchhhhhhhcccccccchH
Confidence                999999999995    444 69999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCccccccCCCCCccccccCCC-CcchHHHHHHHHhhhhhhhhcCccCCccccccchhhhHHHHHHHHhcc
Q 012555          310 TVSLMKQLLYNPKLQAACPLPFDEAKLWQGQ-SGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFS  388 (461)
Q Consensus       310 t~~lv~~Ll~~~~l~~sc~~~FDE~~lF~~~-~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt~GLgTALKILFs  388 (461)
                      |+.+|.++++.++   +||.||||+.||+|+ .++.||++||+|||||||||||||||||||||||||+||||||||||+
T Consensus       305 ~k~~i~~il~~i~---~~p~hFdE~~~f~gd~~a~~lKe~fr~hFrnISrIMDCVgCdKCRLWGKlQt~GlGTALKILfs  381 (469)
T KOG2608|consen  305 TKSLLSDILSQIK---AFPKHFDEAELFAGDSEAPALKEEFRKHFRNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFS  381 (469)
T ss_pred             HHHHHHHHHHHHh---hCccccchHhhhcccccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHHHHhc
Confidence            9999999998765   699999999999999 789999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccc--ccccccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccccC
Q 012555          389 VEGQNHAA--QSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKKISD  441 (461)
Q Consensus       389 ~~~~~~~~--~~~~~L~R~EiVALiNtf~RlS~SI~~v~~f~~~~~~~~~~~~~~  441 (461)
                      ..+.++..  ...++|+|+|||||+|||+|||+||++|++|+.++++.+.++..+
T Consensus       382 ~~~~~~~~~~s~~~~LtR~EvVAL~N~FgRLS~SV~~v~~fr~~~~~~~~~~~~k  436 (469)
T KOG2608|consen  382 VKDADPFTQLSESLELTRNEVVALVNTFGRLSESVREVDNFRSDLAPLLVGASLK  436 (469)
T ss_pred             cCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence            87743221  233899999999999999999999999999999999999998776

>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ] Back     alignment and domain information
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
3ahq_A465 Hyperactive Human Ero1 Length = 465 3e-54
3ahr_A465 Inactive Human Ero1 Length = 465 5e-54
3nvj_A393 Crystal Structure Of The C143aC166A MUTANT OF ERO1P 7e-35
1rq1_A386 Structure Of Ero1p, Source Of Disulfide Bonds For O 9e-35
3m31_A388 Structure Of The C150aC295A MUTANT OF S. CEREVISIAE 1e-34
1rp4_A389 Structure Of Ero1p, Source Of Disulfide Bonds For O 2e-33
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1 Length = 465 Back     alignment and structure 
Iteration: 1

 Score =  209 bits (531), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 205/419 (48%), Gaps = 70/419 (16%)
Query: 71  TGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDC 130
           +G ++DC CD ET+D  N   L P LQ+L+ + +FRY+K  L   CPFW D   C  RDC
Sbjct: 37  SGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDC 96
Query: 131 SVXXXXXXXXXXXXXXXXHILP--SDDLMCQEGKPE--ATVDRTLD---KRAFRGWIETD 183
           +V                +     +++L+ +  + E    VD +L    ++A   W + D
Sbjct: 97  AVKPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAVDESLSEETQKAVLQWTKHD 156
Query: 184 NPWTNDDETDN---GEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIV-PAN 239
           +   N  E D+    E  YV+LLLNPERYTGY GP A +IW+ +Y ENC K   I  P N
Sbjct: 157 DSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLN 216
Query: 240 P----------------------------------QTRPNPPAKTRPL--------RWGK 257
           P                                      N     R L        +WG 
Sbjct: 217 PLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSARYLLQETWLEKKWGH 276
Query: 258 NP---ELMYDRVLRYQD---RVRNLYFTFLFVLRAVTKATDYLEQAEYD--TGNHEDDLK 309
           N    +  +D +L   +   R++NLYF +L  LRA++K   + E+ ++   TGN   D +
Sbjct: 277 NITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPDFQLFTGNKIQDEE 336
Query: 310 TVSLMKQLLYNPKLQAACPLPFDEAKLWQG--QSGPELKQQIQEQFRNISALMDCVGCEK 367
              L+ ++L+  K   + PL FDE   + G  +   +LK+  +  FRNIS +MDCVGC K
Sbjct: 337 NKMLLLEILHEIK---SFPLHFDENSFFAGDKKEAHKLKEDFRLHFRNISRIMDCVGCFK 393
Query: 368 CRLWGKLQVLGLGTALKILFSVEGQNHAAQS----QLQLQRNEVIALVNLLNRLSESVK 422
           CRLWGKLQ  GLGTALKILFS +   +  +S    +  L R E+++L N   R+S SVK
Sbjct: 394 CRLWGKLQTQGLGTALKILFSEKLIANMPESGPSYEFHLTRQEIVSLFNAFGRISTSVK 452
>pdb|3AHR|A Chain A, Inactive Human Ero1 Length = 465 Back     alignment and structure
>pdb|3NVJ|A Chain A, Crystal Structure Of The C143aC166A MUTANT OF ERO1P Length = 393 Back     alignment and structure
>pdb|1RQ1|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For Oxidative Protein Folding In The Cell Length = 386 Back     alignment and structure
>pdb|3M31|A Chain A, Structure Of The C150aC295A MUTANT OF S. CEREVISIAE ERO1P Length = 388 Back     alignment and structure
>pdb|1RP4|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For Oxidative Protein Folding In The Cell Length = 389 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
3ahq_A465 ERO1-like protein alpha; disulfide bond, PDI, redo 1e-138
3m31_A388 Endoplasmic oxidoreductin-1; disulfide mutant, dis 1e-127
>3ahq_A ERO1-like protein alpha; disulfide bond, PDI, redox, hyperactive human ERO1, oxidored; HET: FAD; 2.35A {Homo sapiens} PDB: 3ahr_A* Length = 465 Back     alignment and structure
 Score =  403 bits (1035), Expect = e-138
 Identities = 141/450 (31%), Positives = 210/450 (46%), Gaps = 70/450 (15%)

Query: 52  ANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAK 111
            + +     +++ +   + +G ++DC CD ET+D  N   L P LQ+L+ + +FRY+K  
Sbjct: 18  RHGEEQPPETAAQRCFCQVSGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVN 77

Query: 112 LWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDL----MCQEGKPEATV 167
           L   CPFW D   C  RDC+V     +E P+  K   +    +        ++ +    V
Sbjct: 78  LKRPCPFWNDISQCGRRDCAVKPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAV 137

Query: 168 DRTLD---KRAFRGWIETDNPWTN---DDETDNGEMTYVNLLLNPERYTGYTGPSARRIW 221
           D +L    ++A   W + D+   N    D+  + E  YV+LLLNPERYTGY GP A +IW
Sbjct: 138 DESLSEETQKAVLQWTKHDDSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIW 197

Query: 222 DAVYTENCPKWMAI-VPANPQTRPNPPAKTRPL--------------------------- 253
           + +Y ENC K   I  P NP       ++                               
Sbjct: 198 NVIYEENCFKPQTIKRPLNPLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINV 257

Query: 254 ---------------RWGKNPELMYDRVLR------YQDRVRNLYFTFLFVLRAVTKATD 292
                          +WG N      R            R++NLYF +L  LRA++K   
Sbjct: 258 HLSARYLLQETWLEKKWGHNITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLP 317

Query: 293 YLEQAEYD--TGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQS--GPELKQQ 348
           + E+ ++   TGN   D +   L+ ++L+  K   + PL FDE   + G      +LK+ 
Sbjct: 318 FFERPDFQLFTGNKIQDEENKMLLLEILHEIK---SFPLHFDENSFFAGDKKEAHKLKED 374

Query: 349 IQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQS----QLQLQR 404
            +  FRNIS +MDCVGC KCRLWGKLQ  GLGTALKILFS +   +  +S    +  L R
Sbjct: 375 FRLHFRNISRIMDCVGCFKCRLWGKLQTQGLGTALKILFSEKLIANMPESGPSYEFHLTR 434

Query: 405 NEVIALVNLLNRLSESVKIVHEMGPSIEKI 434
            E+++L N   R+S SVK +      ++ I
Sbjct: 435 QEIVSLFNAFGRISTSVKELENFRNLLQNI 464
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond, electron transport, endopl reticulum, FAD, flavoprotein, glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae} PDB: 1rp4_A* 1rq1_A* 3nvj_A* Length = 388 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
3ahq_A465 ERO1-like protein alpha; disulfide bond, PDI, redo 100.0
3m31_A388 Endoplasmic oxidoreductin-1; disulfide mutant, dis 100.0
>3ahq_A ERO1-like protein alpha; disulfide bond, PDI, redox, hyperactive human ERO1, oxidored; HET: FAD; 2.35A {Homo sapiens} PDB: 3ahr_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-135  Score=1056.41  Aligned_cols=370  Identities=36%  Similarity=0.675  Sum_probs=292.3

Q ss_pred             CCCCcccccCCCCCCccccccccCcccchhhhhhhhhchhhHHhHHhhcCCCceEEeccCCCCCCCCCCCCCCCCCCCcc
Q 012555           53 NNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSV  132 (461)
Q Consensus        53 ~~~~~c~c~~~~~~~~~~~G~vdDc~c~~etId~~N~~~l~P~L~~L~~t~fFRyfKVnL~~~CPFW~dd~~C~~~~C~V  132 (461)
                      +..+.|||+        ++|+|+||||+|+|||++|+++|+|+|++|+++||||||||||+++||||+|+++|++++|+|
T Consensus        27 ~~~~~c~c~--------~~g~v~Dc~c~~etId~~N~~~i~p~L~~L~~t~fFRyfkVnL~k~CPFW~d~~~C~~~~C~V   98 (465)
T 3ahq_A           27 TAAQRCFCQ--------VSGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDCAV   98 (465)
T ss_dssp             ----CEEEE--------CSSSSCEEECCHHHHHHHHHHTTHHHHHHHHHSHHHHEEEECCCCCCSSCC------------
T ss_pred             CCCCCcccC--------CCCccccCcCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCccCCcCCCCCee
Confidence            556789999        999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCC----ccccccCCCCcccccccc---hhhhcCccccCCC---CCCCCCCCCCCceEeeC
Q 012555          133 CECPENEFPEPFKKPFHILPSD----DLMCQEGKPEATVDRTLD---KRAFRGWIETDNP---WTNDDETDNGEMTYVNL  202 (461)
Q Consensus       133 ~~c~e~eiP~~wr~~~~~~~~~----~~~c~~~~~~~~vd~tl~---~~~~~~w~~~d~~---~~~dDe~d~~~~~YVDL  202 (461)
                      ++|+|+|||++||++..+++..    ...|++...++.||++++   ..+|.+|.++|++   +|..||+++++++||||
T Consensus        99 ~~c~e~eiP~~wr~~~~~~~~~~~~~~~~c~~~~~lg~vd~tls~~~~~~~~~w~~~dd~~~~fC~~dDe~~~~~~YVdL  178 (465)
T 3ahq_A           99 KPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAVDESLSEETQKAVLQWTKHDDSSDNFAEADDIQSPEAEYVDL  178 (465)
T ss_dssp             ------------------------------CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHTTCC-------CCSCEEEEG
T ss_pred             ecCCcccCChhhcccccccchhhccccccccccccccccccccchhhhhhhhccccccCcccccccccCCCCCCceEEec
Confidence            9999999999999975444322    135766667889999988   3578899988764   45444445689999999


Q ss_pred             CCCCCCCCCCCCCChhhhHHHHHhhcCCCCCC------------------------CCCC------------CCCCcCCC
Q 012555          203 LLNPERYTGYTGPSARRIWDAVYTENCPKWMA------------------------IVPA------------NPQTRPNP  246 (461)
Q Consensus       203 l~NPERyTGY~G~~A~rIW~aIY~ENCF~~~~------------------------~~~C------------LHaSIsiH  246 (461)
                      ++||||||||+|++|+|||++||+||||++.+                        +++|            |||||+||
T Consensus       179 l~NPEryTGY~G~~A~rIW~aIY~ENCF~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ClEkrvFyRLISGLHaSIs~H  258 (465)
T 3ahq_A          179 LLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLNPLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVH  258 (465)
T ss_dssp             GGSCCCCCCCCHHHHHHHHHHHHTTCCBCC---------------------------CCCBCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCcCcccCCCCCcHHHHHHHHHHHhccCccccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998642                        5788            99999999


Q ss_pred             CCCC----C---CCCCCCChHHHHHHH------hhhcchhhhHHHHHHHHHHHHHHhhhhhhhhcc--CCCCchhcHHHH
Q 012555          247 PAKT----R---PLRWGKNPELMYDRV------LRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEY--DTGNHEDDLKTV  311 (461)
Q Consensus       247 l~~~----~---~~~wgpNl~~F~~Rv------~~~PeRl~NLYF~Yl~vLRAl~Ka~p~L~~~~f--~tG~~~eD~~t~  311 (461)
                      ||++    .   +|.||||+++|++||      |+|||||+||||+|+||||||+||+|||.++.|  +||+..+|.+|+
T Consensus       259 l~~~Yl~~~~~~~~~W~pNl~~F~~R~~~~~t~G~~PeRl~NLYF~Y~lvLRAl~K~~p~l~~~~y~~~tGn~~eD~~tk  338 (465)
T 3ahq_A          259 LSARYLLQETWLEKKWGHNITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPDFQLFTGNKIQDEENK  338 (465)
T ss_dssp             HHHTEEEEECSSCEEEECCHHHHHHHHCHHHHTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHSTTCCCCCSCSSHHHHHH
T ss_pred             HHHHHhccccccCCCcCCCHHHHHHHhccccccCCChHHHHhHHHHHHHHHHHHHHhhhhhhhccccccCCChhhhHHHH
Confidence            9998    3   899999999999997      579999999999999999999999999997666  999999999999


Q ss_pred             HHHHHHhcCccccccCCCCCccccccCCC--CcchHHHHHHHHhhhhhhhhcCccCCccccccchhhhHHHHHHHHhccc
Q 012555          312 SLMKQLLYNPKLQAACPLPFDEAKLWQGQ--SGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSV  389 (461)
Q Consensus       312 ~lv~~Ll~~~~l~~sc~~~FDE~~lF~~~--~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt~GLgTALKILFs~  389 (461)
                      ++|.+|++..   .+||.+|||+.||++.  .+.+||+|||+|||||||||||||||||||||||||+||||||||||+.
T Consensus       339 ~~l~~ll~~~---~s~p~~FDE~~lF~~~~~~~~~LKeeFr~~FrNISrIMDCVgCdKCRLWGKLQt~GlgTALKILF~~  415 (465)
T 3ahq_A          339 MLLLEILHEI---KSFPLHFDENSFFAGDKKEAHKLKEDFRLHFRNISRIMDCVGCFKCRLWGKLQTQGLGTALKILFSE  415 (465)
T ss_dssp             HHHHHHHHHH---HHSCEEECTTCTTSCCTHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHH---HhCCCccChHhhcCCcchhHHHHHHHHHHHHHhHhHHhcCCccchhhhhhHHHHHHHHHHHHHHhcc
Confidence            9999999854   4799999999999984  6789999999999999999999999999999999999999999999997


Q ss_pred             cCCccc----cccccccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012555          390 EGQNHA----AQSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEK  433 (461)
Q Consensus       390 ~~~~~~----~~~~~~L~R~EiVALiNtf~RlS~SI~~v~~f~~~~~~  433 (461)
                      ++.++.    ....++|+|+|||||||||+|||+||++|++|+.|++.
T Consensus       416 ~~~~~~~~~~~~~~~~L~R~ElVALiNtf~RlS~SI~~v~~F~~~~~~  463 (465)
T 3ahq_A          416 KLIANMPESGPSYEFHLTRQEIVSLFNAFGRISTSVKELENFRNLLQN  463 (465)
T ss_dssp             HHHHTCCSSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            653221    12237899999999999999999999999999888753
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond, electron transport, endopl reticulum, FAD, flavoprotein, glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae} SCOP: a.227.1.1 PDB: 1rp4_A* 1rq1_A* 3nvj_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 461
d1rp4a_374 a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p 1e-129
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 374 Back     information, alignment and structure

class: All alpha proteins
fold: ERO1-like
superfamily: ERO1-like
family: ERO1-like
domain: Endoplasmic oxidoreductin 1, Ero1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  377 bits (969), Expect = e-129
 Identities = 100/390 (25%), Positives = 178/390 (45%), Gaps = 48/390 (12%)

Query: 81  YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVCECP-EN 138
           +  ++++N E +   L  L+ + FF+YF+  L+  C FW  +DG+C  R CSV      +
Sbjct: 3   FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 61

Query: 139 EFPEPFKKP-FHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNP--WTNDDETDNG 195
             PE ++        +D +   +   +         +  +  ++ ++   + + ++ +  
Sbjct: 62  TLPEYWQPEILGSFNNDTMKEADDSDDECKFLDQLCQTSKKPVDIEDTINYCDVNDFNGK 121

Query: 196 EMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPL-- 253
               ++L  NPER+TGY G  A +IW  +Y +NC                  A  R +  
Sbjct: 122 NAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFT-----IGETGESLAKDAFYRLVSG 176

Query: 254 -------------------RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYL 294
                              +W  N +L   R+  + DRV N+YF +  V +A+ K   YL
Sbjct: 177 FHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYL 236

Query: 295 EQAEY-DTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQF 353
            +  + D  N E   K  +++ QL             F+E  ++       LK + + +F
Sbjct: 237 PEFSFCDLVNKEIKNKMDNVISQL---------DTKIFNEDLVFANDLSLTLKDEFRSRF 287

Query: 354 RNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQS--QLQLQRNEVIALV 411
           +N++ +MDCV C++CRLWGK+Q  G  TALKILF +   +   +     +L + E+IAL+
Sbjct: 288 KNVTKIMDCVQCDRCRLWGKIQTTGYATALKILFEINDADEFTKQHIVGKLTKYELIALL 347

Query: 412 NLLNRLSESVKIVHEMGPSIEKIMEKKISD 441
               RLSES++ V+      EK+  K++ +
Sbjct: 348 QTFGRLSESIESVNMF----EKMYGKRLLE 373

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
d1rp4a_374 Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast 100.0
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: ERO1-like
superfamily: ERO1-like
family: ERO1-like
domain: Endoplasmic oxidoreductin 1, Ero1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-119  Score=913.70  Aligned_cols=343  Identities=27%  Similarity=0.543  Sum_probs=287.3

Q ss_pred             chhhhhhhhhchhhHHhHHhhcCCCceEEeccCCCCCCCCC-CCCCCCCCCCccccCCC-CCCCCCCCCCC-CCCCCCcc
Q 012555           80 DYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWP-DDGMCRLRDCSVCECPE-NEFPEPFKKPF-HILPSDDL  156 (461)
Q Consensus        80 ~~etId~~N~~~l~P~L~~L~~t~fFRyfKVnL~~~CPFW~-dd~~C~~~~C~V~~c~e-~eiP~~wr~~~-~~~~~~~~  156 (461)
                      +|+|||++|++ |+|+|++|+++||||||||||+++||||. ++++|++++|+|++|++ ++||++||++. +.+..+..
T Consensus         2 s~~~vd~~N~~-i~p~L~~L~~~dyFRyfkVnL~~~CPFW~~d~~~C~~~~C~V~~c~dee~iP~~~~~~~~~~~~~~~~   80 (374)
T d1rp4a_           2 SFNELNAINEN-IRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWDTLPEYWQPEILGSFNNDTM   80 (374)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHTSTTTSEEEEESSCCCSSSCSSSSCCCTTTTBCCCSSCGGGSCGGGSHHHHTCCCTTTC
T ss_pred             CHHHHHHHHHH-HHHHHHHhcCCCceeeeecCCCCCCCCCCccccCcCCCCCCCccCCccccCccccccccccccccchh
Confidence            79999999996 79999999999999999999999999995 68999999999999965 67999999764 33333211


Q ss_pred             ccccCCC--CcccccccchhhhcCccccCC--CCCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCC
Q 012555          157 MCQEGKP--EATVDRTLDKRAFRGWIETDN--PWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKW  232 (461)
Q Consensus       157 ~c~~~~~--~~~vd~tl~~~~~~~w~~~d~--~~~~dDe~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~  232 (461)
                      .......  ....|..  ......|...++  .||..||+++++++||||++||||||||+|++|+|||++||+||||++
T Consensus        81 ~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~dfC~~dD~~~~~~~YVdLl~NPERyTGY~G~~a~~IW~~IY~ENCF~~  158 (374)
T d1rp4a_          81 KEADDSDDECKFLDQL--CQTSKKPVDIEDTINYCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTI  158 (374)
T ss_dssp             EECCTTCGGGSBHHHH--SSTTTSSCCSSSCCCHHHHTTCCCTTEEEEETTTSCCCCCCBCHHHHHHHHHHHHHTCCCCT
T ss_pred             hhccccccchhhcchh--hhhhccccccccccccccccccCCCCceEeehhhCcccccCCCCCcHHHHHHHHHHHhCCCC
Confidence            1111000  0011110  012233333333  256555556789999999999999999999999999999999999998


Q ss_pred             CCCCCC------------CCCCcCCCCCCC----CCCCCCCChHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhhhhhhh
Q 012555          233 MAIVPA------------NPQTRPNPPAKT----RPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQ  296 (461)
Q Consensus       233 ~~~~~C------------LHaSIsiHl~~~----~~~~wgpNl~~F~~Rv~~~PeRl~NLYF~Yl~vLRAl~Ka~p~L~~  296 (461)
                      ...++|            ||||||||||++    .+|.||||+++|++||++||+||+||||+|+++||||+||+|||.+
T Consensus       159 ~~~~~c~ekrvfyrlISGlHsSIs~Hl~~~yl~~~~~~w~pN~~~f~~R~g~~p~rl~NLYF~y~~~LrAl~k~~~~l~~  238 (374)
T d1rp4a_         159 GETGESLAKDAFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPE  238 (374)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHHHHHHHHSEEETTTTEEECCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHGGGCCC
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCccCCCHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888            999999999998    6899999999999999999999999999999999999999999999


Q ss_pred             hccCCCCchhcHHHHHHHHHHhcCccccccCCCCCccccccCCCCcchHHHHHHHHhhhhhhhhcCccCCccccccchhh
Q 012555          297 AEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQV  376 (461)
Q Consensus       297 ~~f~tG~~~eD~~t~~lv~~Ll~~~~l~~sc~~~FDE~~lF~~~~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt  376 (461)
                      ++|+++.   |.+++..+.+|++.     .||.+|||+.||+++.+..||+|||+|||||||||||||||||||||||||
T Consensus       239 ~~~~~~~---~~~~~~~~~~l~~~-----~~~~~fde~~~f~~~~~~~lk~efr~~frnisriMDCV~CeKCrLwGKlQt  310 (374)
T d1rp4a_         239 FSFCDLV---NKEIKNKMDNVISQ-----LDTKIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQCDRCRLWGKIQT  310 (374)
T ss_dssp             CSTTSST---TTTHHHHHHHHHHT-----TCCGGGGSCTTCTTTSCHHHHHHHHHHHHHHHHGGGGCCSHHHHHHHHHHH
T ss_pred             cCCCCCC---CHHHHHHHHHHHHH-----hccccCCHHHhcCCcchHHHHHHHHHHHHHHHHHHcccCccHhHhhHHHHH
Confidence            9998764   44555667777753     367899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccccCCccccc--cccccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012555          377 LGLGTALKILFSVEGQNHAAQ--SQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEK  433 (461)
Q Consensus       377 ~GLgTALKILFs~~~~~~~~~--~~~~L~R~EiVALiNtf~RlS~SI~~v~~f~~~~~~  433 (461)
                      +||||||||||+.++.+..++  ..++|+|+|||||||||+|||+||++|++|++|.++
T Consensus       311 ~GlgtALKILf~~~~~~~~~~~~~~~~L~R~ElvALiNt~~rlS~SI~~v~~F~~m~~~  369 (374)
T d1rp4a_         311 TGYATALKILFEINDADEFTKQHIVGKLTKYELIALLQTFGRLSESIESVNMFEKMYGK  369 (374)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887554332  125799999999999999999999999999776543