Citrus Sinensis ID: 012562

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
MVVCLESPKCREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLEPKPHDDFLKY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHccccccEEEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccEEEEEEEEccccccccccccccccccEEEEEEEEEcccHHHHHHHHccccccEEEEEEEEccccEEEEEEcccccEEEEEccccccccccEEEEEcccEEEEEEEccccccEEEEcccccEEEEEEEEEEcccccccHHHHHHHHHHccccccEEEEEEccEEEEEEEEEcccccccccccEEEEEEEEEcccccHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccEEEEEEEEEEccHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHcccccccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEcccccEccccEEEcccEEEEEEEEEEcccEEcccccccccccHEEEEEEEEEEccHHHHHHHHHcccHHHEEEEEEccccccEEEEEEccccEEEEEEEcccccccccEEEEEcccEEEEEEEccccccEEEEcccccEEEEEEEEEccccccccccHHHHHHHHHHHHcccEEEEcccHHHHHHHccccccccccccccEEEEEEcccccccHHHHHHHHHccccccEEEEEEcccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHccHHHEEEEEEEccccHHHHHHHHHHHcccccccccEEEEEEcccccHHccc
Coil and Loop (DISEMBL)
mvvclespkcreddgdrlcslpepvIHQIFSFMETIDVVRASAVSRKWRYLWLSVpylsfdmstissnpqeiwshekfkDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTvygevtelphclvtCESLEALKLACRQLRMCVlklpfsvgfsrlksldlhnvefldhnllhKFVSSRRLLEKLILKscsfrdfkildisstslksltldnfggdesgnykvkiacpnlvsfnflaswapdfafedLDSLQNAFIffdiidrderdnesCHILSKLLNELCEVKALKLSTAFLRFHFVleergfipnsFNYLKSLVLSVSMADWVVPSIISLlncspnlealtiyfegedcddwkisnksifcltcHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMklprsssnvaleflepkphddflky
Flexible Loop (DISEMBL)
mvvclespkcreddgdrLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKildisstslkslTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLkklsfswmedvENRKEIISRimklprsssnvaleflepkphddflky
Low Complexity Region (SEG)
MVVCLESPKCREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAfiffdiidrdERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLEPKPHDDFLKY
Disordered region (IsUnstruct)
****************RLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIM*************************
Disordered Region (DISOPRED)
********************LPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCD**K****SIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLEPKP*******
Disordered Region (DISEMBL)
MVVCLESPKCREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLEPKPHDDFLKY
Disordered Region (DISPRO)
************DDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLEPKPHDDFLK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVVCLESPKCREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLEPKPHDDFLKY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	461	2.2.26 [Sep-21-2011]
Q6DBN6	435	F-box/FBD/LRR-repeat prot	yes	no	0.874	0.926	0.285	3e-27
Q9ZV94	452	Putative F-box/FBD/LRR-re	no	no	0.913	0.931	0.270	4e-27
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.882	0.916	0.270	7e-24
Q9FNI8	466	FBD-associated F-box prot	no	no	0.880	0.871	0.252	9e-22
Q9FM89	422	F-box/FBD/LRR-repeat prot	no	no	0.869	0.950	0.260	2e-20
Q9FZ70	416	F-box/FBD/LRR-repeat prot	no	no	0.841	0.932	0.251	3e-20
Q94B46	468	F-box/LRR-repeat protein	no	no	0.882	0.869	0.287	4e-20
Q9FZ52	449	F-box/FBD/LRR-repeat prot	no	no	0.882	0.906	0.266	5e-20
Q9LXR4	454	Putative F-box/LRR-repeat	no	no	0.802	0.814	0.289	1e-19
Q9M8U4	474	F-box/LRR-repeat protein	no	no	0.856	0.833	0.280	2e-19

>sp|Q6DBN6|FDL6_ARATH F-box/FBD/LRR-repeat protein At1g51370 OS=Arabidopsis thaliana GN=At1g51370 PE=2 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 200/441 (45%), Gaps = 38/441 (8%)

Query: 14  DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIW 73
           + DR+  LPEP+I +I   + T D VR SA+S KWRYLW SVP L  D    SSN   I 
Sbjct: 17  EEDRISQLPEPLISEILFHLSTKDSVRTSALSTKWRYLWQSVPGLDLD-PYASSNTNTIV 75

Query: 74  SHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGE 133
           S      FV     S   S  I++ RL    + + Y +  W+ A   R +Q  D+  + +
Sbjct: 76  S------FVESFFDSHRDSW-IRKLRLDLGYHHDKYDLMSWIDAATTRRIQHLDVHCFHD 128

Query: 134 VTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFV 193
             ++P  + TC +L  L+     LR  VL  P  V    LK +   NV + +   L K +
Sbjct: 129 -NKIPLSIYTCTTLVHLR-----LRWAVLTNPEFVSLPCLKIMHFENVSYPNETTLQKLI 182

Query: 194 SSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFL 253
           S   +LE+LIL S  +    +L + S +LK L ++ F         V I  P L      
Sbjct: 183 SGSPVLEELILFSTMYPKGNVLQLRSDTLKRLDINEF-------IDVVIYAPLLQCLR-- 233

Query: 254 ASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLST-AFLR 312
           A       F+ + S   A +  D ++   R  +   ++  +L ++  V+ L +S+  +  
Sbjct: 234 AKMYSTKNFQIISSGFPAKLDIDFVNTGGRYQKK-KVIEDILIDISRVRDLVISSNTWKE 292

Query: 313 FHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYF-------- 364
           F    + R  +   F Y+  L     ++D  +  + +LL   P LE+L +          
Sbjct: 293 FFLYSKSRPLL--QFRYISHLNARFYISD--LEMLPTLLESCPKLESLILEMVKNQSTRR 348

Query: 365 EGEDCDDWKISNKSIFCLTCHLKTVELIH-VAGDENELELVRFLLKNGHVLKKLSFSWME 423
            GE  +   + +   +CL   LK VEL   +   E E+ELVR++L N  VLKKL  +   
Sbjct: 349 HGEKREPNVMVSTVPWCLVSSLKFVELKRSIPRYEGEMELVRYVLTNSTVLKKLRLNVYY 408

Query: 424 DVENRKEIISRIMKLPRSSSN 444
             + +   ++ ++ +PR SS 
Sbjct: 409 TKKAKCAFLTELVAIPRCSST 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana GN=At1g78760 PE=4 SV=1

 Score =  122 bits (307), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 211/462 (45%), Gaps = 41/462 (8%)

Query: 9   KCREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSN 68
           + R  + DRL +LPE +I QI   + T DVV++S +S++WR LW  VP L+ + +     
Sbjct: 9   RARRSEEDRLSNLPESLICQIMLNIPTKDVVKSSVLSKRWRNLWRYVPGLNVEYN----- 63

Query: 69  PQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYT---VYRWVCAVARRNVQV 125
             +   +  F  FV+  L     S   Q FRL       + T   V RW+  V  + ++V
Sbjct: 64  --QFLDYNAFVSFVDRFLALDRESC-FQSFRLRYDCDEEERTISNVKRWINIVVDQKLKV 120

Query: 126 FDLTVY---GEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVE 182
            D+  Y    E  ++P  + TCESL +LKL        +L  P  +    +K ++L  V+
Sbjct: 121 LDVLDYTWGNEEVQIPPSVYTCESLVSLKLC-----NVILPNPKVISLPLVKVIELDIVK 175

Query: 183 FLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESG--NYKV 240
           F +  +L K +SS   LE LI+   S  D  +L +SS SL  L+  + G    G    +V
Sbjct: 176 FSNALVLEKIISSCSALESLIISRSSVDDINVLRVSSRSL--LSFKHIGNCSDGWDELEV 233

Query: 241 KIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDE----RDNESCHILSKLLN 296
            I  P L   N        F  ++  SL  A I   I + +E     D     ++   L 
Sbjct: 234 AIDAPKLEYLNISDHSTAKFKMKNSGSLVEAKINI-IFNMEELPHPNDRPKRKMIQDFLA 292

Query: 297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPN 356
           E+  VK L +S+  L    V+ + G     F  L S  L +   D  +  + + L   PN
Sbjct: 293 EISSVKKLFISSHTLE---VIHDLGCELPLFRNLSS--LHIDFEDHTLKMLSTFLQSCPN 347

Query: 357 LEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH----VAGDENELELVRFLLKNGH 412
           +++L + F+    +D    ++ +    C   T+E +     + G+   +++V ++L+N  
Sbjct: 348 VKSLVVEFKDSSKED---GDRVLSIPRCFFTTLEYVKIERPITGEARGMKVVSYILENSP 404

Query: 413 VLKKLSFSWMEDVENRKEII-SRIMKLPRSSSNVALEFLEPK 453
           +LKKL+       E  + +I   ++ +PR S++  +   EP+
Sbjct: 405 ILKKLNLCLNSSREKSESVILKELLTIPRLSTSCKVVVFEPR 446

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score =  112 bits (280), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 201/443 (45%), Gaps = 36/443 (8%)

Query: 14  DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIW 73
           + +RL  LP+ +I  I S + T D VR S +S +WR LW  VP L FD        +E+ 
Sbjct: 16  EEERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFD-------SRELR 68

Query: 74  SHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVY-- 131
           S  +F  F          S  IQ+ R+     A +Y +  W+  V R  +Q  D++V+  
Sbjct: 69  SFSEFVSFAGSFFYLHKDSY-IQKLRVCIYDLAGNYYLTSWIDLVTRHRIQHIDISVFTC 127

Query: 132 GEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHK 191
                +P  L TC++L  LKL+    R+ ++ + F V    LK LDL  V F +   L K
Sbjct: 128 SGFGVIPLSLYTCDTLVHLKLS----RVTMVNVEF-VSLPCLKILDLDFVNFTNETTLDK 182

Query: 192 FVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFN 251
            +S   +LE+L +   S  + KI+ + S +LK + +       +G   + I  P L   +
Sbjct: 183 IISCSPVLEELTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNG---LVIDTPLLQFLS 239

Query: 252 FLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFL 311
             A       F +L       I  +++D ++  N S  +       +  V++L +    +
Sbjct: 240 IKAHSIKSIEFINLGFTTKVDIDVNLLDPNDLSNRS--MTRDFFTTISRVRSLVIRHGTI 297

Query: 312 R--FHFVLEERGFIP-NSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIY---FE 365
           +  FH++  E    P   F YL  L    S+++  +  +++LL   P LE+L++    +E
Sbjct: 298 KDIFHYMELE----PLQQFCYLSELSAVCSISN--LEMLLNLLKSCPKLESLSLKLVDYE 351

Query: 366 GEDCDDWKISNKSIFCLTCHLKTVEL-IHVAGDENELELVRFLLKNGHVLKKLSFS---W 421
               ++   S     CL   LK V+L   + G   EL++ R+ L+N  +L+KL+      
Sbjct: 352 KNKKEEVMSSTVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTLKIDYM 411

Query: 422 MEDVENRKEIISRIMKLPRSSSN 444
            +D  N   I   +  +PR SS 
Sbjct: 412 YKDEANVNHIRQTLHAVPRCSST 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score =  105 bits (261), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 206/456 (45%), Gaps = 50/456 (10%)

Query: 16  DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
           D +  LP+ +I QI  ++   D+VR S++S +W+ LWL +P L  D        +E   +
Sbjct: 28  DLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLD-------SEEFQDY 80

Query: 76  EKFKDFVN-WVLLSQSGSVSIQRFRLYCLSYANDYT-VYRWVCAVARRNVQVFD---LTV 130
             F  F+N ++  S    + + + +L      ND   V RW+  V RR ++  D   L  
Sbjct: 81  NAFVGFMNKFIDFSGEEKICLDKLKLSSRKTVNDLPCVTRWIDFVVRRKLKHLDVECLVN 140

Query: 131 YGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLH 190
              + E+P  L  C++L  L+L     R+ + K   +V    LK++ L    + +  +L 
Sbjct: 141 RKFLEEMPLSLYVCDTLVNLRLH----RVLLGKFE-AVSLPCLKTMRLEENVYANDVVLE 195

Query: 191 KFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLD-NFG-GDE---------SGNYK 239
             +SS  +L+ LI+      + K+L + S +L SL +D NFG GD+         SG   
Sbjct: 196 SLISSCPVLKDLIILRMFEDNVKVLRVHSLTLTSLNIDFNFGEGDDFVDGFDKKVSG--- 252

Query: 240 VKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFF--------DIIDRDERDNESCHIL 291
           V I  P L    F    +      +  SL    + +        D++D   R     +++
Sbjct: 253 VLIDAPRLKYLKFQDDLSGSKIITNSGSLAKVNVVYVFNENDCADVVDIPRR-----NMV 307

Query: 292 SKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLL 351
              L  +  V  +K+S  F+ F +  ++   +P   N  +   L   ++ + +  + ++L
Sbjct: 308 RNFLTSISGVSDMKISQHFVEFLYYYKDFDPLPQFCNLSR---LKAEISLYFLEILPTIL 364

Query: 352 NCSPNLEALTIYFEG--EDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLK 409
              PNL++L +  E   ++ D+  I +    CL   L++VE+    G   ++E+ R+ L+
Sbjct: 365 ESCPNLKSLVMVLEFYLQEEDEPIIFSSVPRCLVSSLESVEIKKFNGRPAKMEVARYFLE 424

Query: 410 NGHVLKKLSFSWM-EDVENRKEIISRIMKLPRSSSN 444
           N  VL+KL         E+   I+  ++ LPR SS 
Sbjct: 425 NSGVLQKLVLHLRCSTHEDGFYILKDLLALPRGSST 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 196/449 (43%), Gaps = 48/449 (10%)

Query: 16  DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
           DRL  LP+  + QI S++ T DV+  S +S++WR+LW  VP L++D+  +  N     + 
Sbjct: 6   DRLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYDLR-LHDN-----TC 59

Query: 76  EKFKDFVNW-VLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYG-- 132
            +F  FV+  +LL ++ ++     ++  + +  +  V  WV     R V+   ++     
Sbjct: 60  PRFSQFVDRSLLLHKAPTLESLNIKIGSICFTAEKDVGVWVRIGVDRFVRELSVSYCSGE 119

Query: 133 EVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKF 192
           E   LP CL TC +L  LKL      + +      V F  LK+L L +V++LD   L + 
Sbjct: 120 EPIRLPKCLFTCSTLAVLKLE----NITLEDASCYVCFQSLKTLHLLDVKYLDDQSLPRI 175

Query: 193 VSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTL----DNFGGDESGNYKVKIACPNLV 248
           +SS   LE L+++ C   + K++ +++ SLK+L+L      F GD+ G     I  P L 
Sbjct: 176 ISSCSSLEDLVVQRCPGDNVKVVTVTAPSLKTLSLHKSSQAFEGDDDGFL---IDTPKLK 232

Query: 249 SFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLST 308
             +    W      E++  +  A +  D+I ++           KLL  +  VK L L  
Sbjct: 233 RVDIEDYWGGFCYIENMPEVVEANV--DVIYKNTE---------KLLGSITSVKRLALC- 280

Query: 309 AFLRFHFVLEERGFIPNS-FNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALT-----I 362
                  +  +  +   + F+ L  L L      W    +  L+  SP L  L      I
Sbjct: 281 ------LITSDAAYPAGTIFSQLVHLELCTCAPRW-WDLLTRLIEDSPKLRVLKLRQKHI 333

Query: 363 YFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKK--LSFS 420
                    WK       CL  HL+T +     G + + E+  F+LK+   LK   +S  
Sbjct: 334 RRAPSPRASWK-QPALPKCLLFHLETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPK 392

Query: 421 WMEDVENRKEIISRIMKLPRSSSNVALEF 449
               +  + E++  +   PR SS   L F
Sbjct: 393 PTSTLLEKHEMLKDLSSSPRGSSTCELLF 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 203/458 (44%), Gaps = 70/458 (15%)

Query: 16  DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
           D +  LP+ +I  I + +   D +R S +S KWRY W ++  L FD   +S +       
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVE 65

Query: 76  EKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVT 135
                F+  VLL   G   I +F+L          + +W+  ++R  ++   L +     
Sbjct: 66  TNLVRFITGVLLLHQG--PIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGEF 123

Query: 136 ELPHCLVTCESLEALKLACRQLRMCVLKLP-FSVGFSRLKSLDLHNVEFLDHNLLHKFVS 194
            +P CL  C     LKL C +L  C    P +  GFS LKSL+LH +  +   ++   +S
Sbjct: 124 RVPACLFNC-----LKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQI-LVAPEVIESLIS 177

Query: 195 SRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIA--CPNLVSFNF 252
              LLE L   S S+ D  +L IS+ +L  L LD       G +K       P LV+ + 
Sbjct: 178 GCPLLEFL---SLSYFDSLVLSISAPNLMYLYLD-------GEFKDIFLENTPKLVAISV 227

Query: 253 LASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLR 312
                            + ++  D+ D ++  +   + L K L  +  ++ L     F +
Sbjct: 228 -----------------SMYMHEDVTDFEQSSD---YNLVKFLGGVPLLEKLVGYIYFTK 267

Query: 313 FHFVLEERGFIPNSFNYLKSLVL---SVSMADWVVPSIISLLNCSPNLEALTIY------ 363
           +  + ++ G +P ++ +LK++ L       AD V+  ++ L+  SPNL+ L +       
Sbjct: 268 YLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEVL-VLLRLVTHSPNLKELKVSASPVQP 326

Query: 364 --FEGEDCD-------DWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVL 414
              E E  D       D+K+ +         L++V++   +G   ELE +RFLL    VL
Sbjct: 327 FPLEEEGFDLFERDYFDYKLPS---------LESVKITDASGIRYELEFIRFLLGTSPVL 377

Query: 415 KKLSF-SWMEDVENRKEIISRIMKLPRSSSNVALEFLE 451
           + ++  S + D + + +++  +++ PR S    L FL+
Sbjct: 378 ETVTVSSSLSDKDAKMDMVIELLRYPRVSPRAQLLFLQ 415

Arabidopsis thaliana (taxid: 3702)

>sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana GN=At4g14096 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 194/445 (43%), Gaps = 38/445 (8%)

Query: 16  DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
           D + SLPE +   I SF+ T +    S +S+KWRYL+  VP L  D S   +   E    
Sbjct: 8   DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYLNPENETEVS 67

Query: 76  EKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVT 135
             F DFV+ VL  Q G+  + +F L          +  W+  V  R V   DL VY E T
Sbjct: 68  SSFMDFVDRVLALQ-GNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSDLDLHVYME-T 125

Query: 136 E--LPHCLVTCESLEALKLACRQLRMCVLKLPFS-VGFSRLKSLDLHNVEFLDHNL-LHK 191
           E   P  +   ++L  LKL    L      L F  V   +LK+L + +  F  + + L K
Sbjct: 126 EFVFPSEMFLSKTLVRLKLMLYPL------LEFEDVYLPKLKTLYIDSCYFEKYGIGLTK 179

Query: 192 FVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFN 251
            +S   +LE L+L    +  +    +S  +LK LT      DE     V I  PNLV   
Sbjct: 180 LLSGCPILEDLVLDDIPWCTWDFASVSVPTLKRLTFSTQVRDEFPK-SVSIDTPNLVYLK 238

Query: 252 FLASWAPDFAFEDLDSLQNAFIFFDIIDRDE--RDNESCHILSKLLNELCEVKALKLSTA 309
           F  + A  +   + DSL  A I   ++   +   +N+     +  +  +C VK L LS+ 
Sbjct: 239 FTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVGNATDFIMRICNVKTLYLSSN 298

Query: 310 FLRFHFVLEERGFIPNSFNYLKSLVL-SVSMADWVVPSIISLLNCSPNLEALTIYFEG-- 366
            L+   VL         FN L  L + S     W   S+  LL  SPNLE  T+ F+G  
Sbjct: 299 TLQ---VLTYSCDAIPIFNNLTHLTIESNPEVGW--QSLPGLLKNSPNLE--TLIFQGLI 351

Query: 367 ----EDCDDW---KISNKSIFCLTCH----LKTVELIHVAGD-ENELELVRFLLKNGHVL 414
               + C D    K   +   CL       +K ++   ++ D E + E +++ L+    L
Sbjct: 352 HKATDKCGDVCLCKPREEIRSCLASSPVKVIKILKFGEISDDMEKQREQIKYFLETMPNL 411

Query: 415 KKLSFSW-MEDVENRKEIISRIMKL 438
           +K+   +    VE+  E+ SR+ +L
Sbjct: 412 EKMILYYNTTSVEDVTEVSSRLQRL 436

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 212/469 (45%), Gaps = 62/469 (13%)

Query: 7   SPKCREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTIS 66
           S K ++ + DR+ +LP+ ++ QI S + T + V  S +S++WR LWL VP L  D +   
Sbjct: 6   SVKEKQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNFP 65

Query: 67  SNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYR-WVCAVARRNVQV 125
            +       + F  FVN  L S++    ++RF+L      +D + ++ W+ AV +R V  
Sbjct: 66  DD-------DVFVSFVNRFLGSENEQ-HLERFKLIYEVNEHDASRFKSWINAVIKRRVCH 117

Query: 126 FDLTVYGEV------TELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLH 179
           F+  V+ EV       ++P  L +CE L  L     QL    L  P SV    +K + L 
Sbjct: 118 FN--VHNEVDDDDELVKMPLSLYSCERLVNL-----QLYRVALDHPESVSLPCVKIMHLD 170

Query: 180 NVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYK 239
            V++   + L   +S   +LE+L +        +++ + S SLKS  +D+    ES N+ 
Sbjct: 171 MVKYDADSTLEILISGCPVLEELTIVRDPNDSLEVVCVRSQSLKSFKIDS-ERYESQNHV 229

Query: 240 VKIACPNLVSFN--------FLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHIL 291
           V I  P L   N        F+      FA  D+D + N   + D ++ D  D+    +L
Sbjct: 230 VTIDAPRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVE-YNDPLEPD--DSSKIAML 286

Query: 292 SKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLL 351
            K L  L  V  + +S+  L+      +   +P  F+ L  L        W +  + + L
Sbjct: 287 GKFLTGLSTVSEMVISSDTLQVIHDYCKMEQLPQ-FSNLSRLHAYFEDTWWEM--LPTFL 343

Query: 352 NCSPNLEALTIYFEG-EDCDDWKISNKSIFCLTCHLKTVELIH---------------VA 395
              PNL +L + F+   D +   +S    +   C L ++E +H               + 
Sbjct: 344 ESFPNLHSLVMEFDCFPDTEQIDLS----YVPQCFLSSLEFVHLKTPYVVNMQKEGRPLT 399

Query: 396 GDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSN 444
           G  ++ +L ++ L+NG  LKKL+ S      +   II  I  +PRSS++
Sbjct: 400 GTSSKRKLAKYFLENGAALKKLTVS-----ASFCNIIDEIKAIPRSSTS 443

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR4|FBL56_ARATH Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana GN=At3g58880 PE=4 SV=1

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 190/421 (45%), Gaps = 51/421 (12%)

Query: 16  DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEI--- 72
           D + SLP+ ++  I S + T +    S +S++WRYL   VPYL FD S    NP+E    
Sbjct: 3   DLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAF-LNPEEGKQT 61

Query: 73  --WSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTV 130
              + + F DFV+ V L+  G   I++F L C +  +   + +W+C V +R V + DL++
Sbjct: 62  REGTRQSFIDFVDRV-LALHGDSPIRKFSLKCKTGVDLDLLNQWICNVLQRGVLLIDLSM 120

Query: 131 YGEVTELPH-CL----VTCESLEALKL--ACRQLRMCVLKLPFSV-GFSRLKSLDLHNVE 182
                +L H C+        +L  LKL   CR     +   P  +     LK+L L +V 
Sbjct: 121 -----DLGHRCMFIEIFMSRTLVELKLGSGCR-----IAFGPEHISALPMLKTLTLDSVS 170

Query: 183 FLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKV-K 241
           + D   L + +S+   LE L L +     +    +S  SLK+LT+ +     SG   V  
Sbjct: 171 WSDSGQLERLLSACPALEALNLANV-HGSYPNATVSIASLKTLTIKSV--SLSGPAHVFS 227

Query: 242 IACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDR-----DERDNESCHI--LSKL 294
              PNL+  N+ A +  D+   +L+ L  A I F + DR       R N    +  + KL
Sbjct: 228 FDTPNLLCLNYTALFEDDYPLVNLEYLVEAQIKFVLTDRLIKLVSVRKNGLLMLSEVQKL 287

Query: 295 LNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM-ADWVVPSIISLLNC 353
           +  +  V+ L LS   L+   VL +       FN L  LV+  SM   W    ++ L NC
Sbjct: 288 IRGISSVRKLYLSPGTLQ---VLGQCSQAMPVFNNLTFLVIESSMDIRWQAMPVL-LKNC 343

Query: 354 SPNLEALTI-----YFEGEDCDDW----KISNKSIFCLTCHLKTVELIHVAGDENELELV 404
            P LE L I     +    DC D         K     +C +K +E+    G   E+E++
Sbjct: 344 -PRLETLVIKGGLVHCVAADCGDACTCISREEKGRSLASCPVKRLEIREFQGTLREMEMI 402

Query: 405 R 405
           +
Sbjct: 403 K 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8U4|FBL41_ARATH F-box/LRR-repeat protein At3g03030 OS=Arabidopsis thaliana GN=At3g03030 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 186/435 (42%), Gaps = 40/435 (9%)

Query: 16  DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
           D + SLP+ V   I SF+ T +    S +S+KWR L+  VP L  D S      +  W  
Sbjct: 2   DLVSSLPDDVRCHILSFLTTKESALTSVLSKKWRNLFTLVPNLDLDDSEYLHPEETKWER 61

Query: 76  EK----FKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTV- 130
           E+    F DFV  V LS  G+  I+RF L C S      + RW+C V +R V   +L + 
Sbjct: 62  EEILDSFLDFVERV-LSLQGNGPIRRFSLRCESGVPPARLNRWLCKVLQRGVADLELIID 120

Query: 131 YGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVG--FSRLKSLDLHNVEFLDHNL 188
           + +   LP  L   E+L  L+L  +    C+   P + G    RL+SLD+ +      + 
Sbjct: 121 FEDGYLLPRELFVSETLVNLRL--KSEFGCIHWWPGAEGTFLPRLQSLDISSAMVFCDDK 178

Query: 189 LHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYK-VKIACPNL 247
           L K +    ++E+L L    + D  +    +T    L L + G   S N K V    PNL
Sbjct: 179 LQKLLPCFPVIEELRLVGMEWIDSHVTVSCATLTNQLLLSSTGSRTSKNPKSVSFDTPNL 238

Query: 248 VSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRD-ERDNESCHILS------------KL 294
           +S  +    A D+   ++ SL  A I   + D    R     + LS            KL
Sbjct: 239 LSLAYSDLVAEDYPLVNMKSLFKARIILGVDDDQIARMRAPTNYLSEDDVVRRFGNVVKL 298

Query: 295 LNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCS 354
           +  +  V+ L L +  L    +  E   +   FN +K+L +  S  D    ++ +LL   
Sbjct: 299 MKGIQNVQQLHLHSDTLEVLSMCCESMPV---FNNVKTLGIK-SDYDRGWQAVPALLRNC 354

Query: 355 PNLEALTIYFE----------GEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELV 404
           P+LE LT  FE          G+ CD     +K     +C +K VE+        E+ L+
Sbjct: 355 PHLETLT--FEGLVHHVTDKCGDACDCIFRKDKGRSLKSCPVKVVEIKEFRVTMKEMHLI 412

Query: 405 RFLLKNGHVLKKLSF 419
              L N   LK++  
Sbjct: 413 EHFLDNFPCLKEMKI 427

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
147812093	607	hypothetical protein VITISV_040899 [Viti	0.908	0.690	0.307	6e-36
224136606	416	predicted protein [Populus trichocarpa]	0.861	0.954	0.268	6e-27
224113879	460	predicted protein [Populus trichocarpa]	0.891	0.893	0.273	1e-26
297842651	451	F-box family protein [Arabidopsis lyrata	0.911	0.931	0.283	2e-26
224067322	505	predicted protein [Populus trichocarpa]	0.859	0.784	0.283	3e-26
42562673	435	F-box/FBD/LRR-repeat protein [Arabidopsi	0.874	0.926	0.285	2e-25
225447425	513	PREDICTED: putative F-box/FBD/LRR-repeat	0.904	0.812	0.278	2e-25
15219162	452	putative F-box/FBD/LRR-repeat protein [A	0.913	0.931	0.270	3e-25
255538530	426	ubiquitin-protein ligase, putative [Rici	0.874	0.946	0.269	4e-25
356564235	427	PREDICTED: F-box/FBD/LRR-repeat protein	0.882	0.953	0.269	5e-24

>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 224/456 (49%), Gaps = 37/456 (8%)

Query: 12  EDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQE 71
           E+  D + +LP+ ++  I SF+ T   V  S +S++WRYLW SVP L FD   +  NP  
Sbjct: 6   EESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFD-DELWLNPST 64

Query: 72  IWSHEK----FKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFD 127
           +   E+    F++FV+ V L  S    I++FRL       D +VY W+C    R VQ  D
Sbjct: 65  LVELEERIIMFQNFVDGV-LRHSEVSCIKKFRLGYRDNNLD-SVYSWICIALERRVQELD 122

Query: 128 LTVYGE-VTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDH 186
           L +  +   ELP     C++L  +KL+C       L +P +V    LK+L L +VE+ D 
Sbjct: 123 LHLLIDWRVELPPMFFICKTLVVVKLSC----ALFLDIPTTVWLPSLKALHLKSVEYSDD 178

Query: 187 NLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTL----DNFGG---DESGNYK 239
           + + K +S   +LE+L+++     +  ++++S+ SLK L +    D F      E  +YK
Sbjct: 179 DSIQKLLSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYK 238

Query: 240 VKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCH--------IL 291
           V +  PNL   +     + D+  +DL SL  AFI  D+    E   ES H         +
Sbjct: 239 VVVDAPNLEYLSITDYLSKDYFVKDLPSLVKAFI--DVEQDSEEFEESPHNGGISYHGPI 296

Query: 292 SKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADW-VVPSIISL 350
            +LL  +  VK L L+   L           +P   N  +   L +   +W  +P   + 
Sbjct: 297 YELLGRISNVKCLSLTGVTLDSLSGTIGDYKLPTFHNMTRLEFLFIGGFNWDFLP---NF 353

Query: 351 LNCSPNLEALTI---YFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFL 407
           L+ SPNLEAL I   Y      + W +  +   CL  HLK +E+  + G++ ELE V +L
Sbjct: 354 LHSSPNLEALVIETGYTNELIPEGWLMPLQVPACLVLHLKEIEIRRIVGEDYELEAVEYL 413

Query: 408 LKNGHVLKKLSFSWMEDVENRKE-IISRIMKLPRSS 442
           LKN  VL++++    E   +++  +  +++ LPR S
Sbjct: 414 LKNAEVLQQMTIDCHESYMDQEFCVCKKLLGLPRGS 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136606|ref|XP_002326902.1| predicted protein [Populus trichocarpa] gi|222835217|gb|EEE73652.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 219/451 (48%), Gaps = 54/451 (11%)

Query: 16  DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDM--STISSNPQEIW 73
           DR+ SLP  V+ QI S +   D VR SA+SRKWRY W  +P+L FD   ++I+S  Q I 
Sbjct: 6   DRISSLPGHVLDQILSVLPIRDAVRTSALSRKWRYQWSQIPHLVFDTQCASITSQDQTI- 64

Query: 74  SHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVY-G 132
           +     + ++ VLL  +G   I +F+L          + RW+  ++R + + F L ++ G
Sbjct: 65  AKNNLVNIIDNVLLLHNG--PIYKFKLSHRDLLGVSDIDRWILHLSRGSTKEFVLEIWKG 122

Query: 133 EVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSV-GFSRLKSLDLHNVEFLDHNLLHK 191
           +  +LP CL + E+L  L+L       C+LK P +  GF  LKSLDL +V          
Sbjct: 123 QRYKLPSCLFSFENLTHLELFN-----CLLKPPPAFKGFRNLKSLDLQHVTL-------- 169

Query: 192 FVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFN 251
              ++ + E LI  SC+             L+ LTL NF     G   +KI  PNL  F+
Sbjct: 170 ---AQEVFENLI-SSCAL------------LERLTLMNF----DGFTHLKINAPNLQFFD 209

Query: 252 FLASWAPDFAFED--LDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTA 309
            +     D +F +  L +L +  ++ ++ +       S   L +    L  ++ L++ + 
Sbjct: 210 -IGGIFDDVSFHNTSLLTLVSIGLYANVKNDRHVSRGSSSKLLRFFVNLPHLRRLEIQSY 268

Query: 310 FLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPS-IISLLNCSPNLEALTIYFEGED 368
           F+++  + +    +P     L  + + ++  D+   S  + +L   PNL+ + +    E+
Sbjct: 269 FIKYLAISKVPSRLPKPCMDLNYISIRINFNDFEENSAALCILKSCPNLQEIEMLGRPEE 328

Query: 369 CDDWKISNKSIF-------CLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSW 421
             D  +  ++ F       CL   L+ V+++ ++G  +EL+ ++FLL N  VL++++   
Sbjct: 329 QAD--VEPQTGFWGDDQWKCLFGQLRLVKIVGISGIRSELDCIKFLLSNSPVLEQMTVK- 385

Query: 422 MEDVENRKEIISRIMKLPRSSSNVALEFLEP 452
              +E   E++  +++  R+S    + +LEP
Sbjct: 386 PASIEGGWELVKELLRFRRASIQAEVIYLEP 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113879|ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|222859667|gb|EEE97214.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 205/446 (45%), Gaps = 35/446 (7%)

Query: 13  DDGDR-LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQE 71
           D G++ + +LP+ ++  I SF+ T   VR S +S+KW +LW S   L+F    + S  ++
Sbjct: 22  DSGEKSIGNLPDALLEHILSFLSTEAAVRTSILSKKWLHLWKSTTNLTF--FGLKSPKRK 79

Query: 72  IWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQ--VFDLT 129
           +     F DFV+ V L+  G  +I +F L C    +   V  W+ A   RNV+    +L 
Sbjct: 80  L-----FMDFVDRV-LALRGPSNIVQFYLSCEVKDDPSRVGTWISAAVNRNVKDLYLELR 133

Query: 130 VYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLL 189
            +     LPHCL  CE+L  L++        +LKLP S+  S LK L+L+ V F D +  
Sbjct: 134 DFEASFVLPHCLFNCETLTELEINMPY----ILKLPSSISLSCLKILNLYEVIFTDDHST 189

Query: 190 HKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLD---NFGGDESGNYKVKIACPN 246
            +  S   L+E L +  C++ +   + IS+  L+SL +           G   V+I   +
Sbjct: 190 QQLFSLPNLVE-LEIHECNWMNLVAVSISAPKLQSLDIHEPCQSSPASLGGCHVRIFGTH 248

Query: 247 LVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKL 306
           L  F  + + + D+   +   ++     F   D+     ++ +  SKLL  +   ++L L
Sbjct: 249 LADFTIIGTLSNDYCLYESSVVETCISIFSAADKPR---QTAYRASKLLEGISSAQSLCL 305

Query: 307 STAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG 366
           +T  +       E    P  F  L SL+     ++        ++  SP+L AL  Y   
Sbjct: 306 TTNVVDVLDDAPELLAFPLEFRNLTSLLFESEESNLHSDGFWHIIYNSPHLIALQFYGVS 365

Query: 367 -----EDC-DDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS 420
                 +C +DW +       L+C LK +++    GDE EL+ V FLLKN   L+ +   
Sbjct: 366 MPKVPSNCREDWTLDPSPPCFLSC-LKFIQVGRFGGDEKELDAVGFLLKNATALESMDII 424

Query: 421 WM------EDVENRKEIISRIMKLPR 440
           +       + V+   EI  +++ LPR
Sbjct: 425 YSGSARRDQGVDKTNEIHQQLLALPR 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842651|ref|XP_002889207.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297335048|gb|EFH65466.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 216/459 (47%), Gaps = 39/459 (8%)

Query: 11  REDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQ 70
           R  D DRL +LPE ++ QI   + T DVV++  +SR+WR LW  VP L+ + S       
Sbjct: 11  RRSDEDRLSNLPESLLCQIMLNIPTKDVVKSCVLSRRWRNLWRYVPGLNVEYS------- 63

Query: 71  EIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYT---VYRWVCAVARRNVQVFD 127
           E   +  F  FV+  L  +  S   +RFRL       + T   V RW+  V  + ++V D
Sbjct: 64  EFLDYNAFVSFVDRFLGVERESC-FERFRLRYDCDEEERTISIVKRWINIVVNQKLKVLD 122

Query: 128 LTVY---GEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFL 184
           +  Y    E  ++P  + TCESL ++KL        +L  P  +    +K+++L  V+F 
Sbjct: 123 VLDYTWGNEEVQIPPSVYTCESLVSMKLC-----NVILPNPQFISLPLVKAIELDIVKFA 177

Query: 185 DHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESG--NYKVKI 242
           +  +L K +SS   LE LI+   S  D  +L + S SL  L   + G    G    +V I
Sbjct: 178 NALVLEKLISSCSALESLIISRSSVDDIDVLRVRSRSL--LRFKHIGNCSDGWDGCEVAI 235

Query: 243 ACPNLVSFNFLASWAPDFAFEDLDSL--QNAFIFFDIIDRDERDNESCH-ILSKLLNELC 299
             P L   N        F  ++  SL   N  I F++ +  + +N     ++   L E+ 
Sbjct: 236 DAPKLEYLNISDHSTAKFRIKNSGSLVEANINIIFNMEELPDPNNRPKRKMIRDFLAEIS 295

Query: 300 EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEA 359
            VK L +S+  L   F  +    +P  F+ L S  L +   D  +  + + L   PNL++
Sbjct: 296 TVKTLFISSHTLEVIF--DSSCELP-VFHNLSS--LHIDFEDHSLKMLSTFLQSCPNLKS 350

Query: 360 LTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH----VAGDENELELVRFLLKNGHVLK 415
           L + F+    +D  +   SI    C L T+E +     + G+   ++LV ++L+N  +LK
Sbjct: 351 LVVEFKDSSEED-GVGVLSI--PLCFLTTLEYVKIERPITGEARGMKLVSYILENSPILK 407

Query: 416 KLSFSWMEDVENRKEII-SRIMKLPRSSSNVALEFLEPK 453
           KL+ S     EN + +I   ++ +PR S++  +   +P+
Sbjct: 408 KLTLSLKSSRENEESVILKELLTVPRLSTSCKVVVSDPR 446

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067322|ref|XP_002302466.1| predicted protein [Populus trichocarpa] gi|222844192|gb|EEE81739.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 220/473 (46%), Gaps = 77/473 (16%)

Query: 6   ESPK--CRED-DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDM 62
           E PK  C  D + DR+ SLP  V+ QI S +   D VR SA+ RKWRY W  +P++ FD 
Sbjct: 82  EPPKFPCEIDTELDRISSLPGHVLGQILSLLPIRDAVRTSALKRKWRYKWSQIPHIVFDS 141

Query: 63  STISSNPQEIWS-HEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARR 121
             IS + Q+  +   K  + ++ +LL  +G   I +F+L          + RW+  ++R 
Sbjct: 142 QGISISSQDQTTIKNKLVNIIDHILLLHNGP--IYKFKLSHCDLLAVSDIDRWILHLSRG 199

Query: 122 NVQVFDLTVY-GEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSV-GFSRLKSLDLH 179
           + + F L ++ G+  +LP CL + ++L  L     +L  C+LK P +  GF  LK+LDL 
Sbjct: 200 STKEFVLEIWKGQQYKLPSCLFSFKNLVYL-----ELFNCLLKPPLAFKGFRNLKNLDLQ 254

Query: 180 NVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYK 239
           +V             ++ + EKLI  SC+             L+ LTL NF G    N  
Sbjct: 255 HVTL-----------AQEVFEKLI-SSCAM------------LERLTLINFDGFTHLN-- 288

Query: 240 VKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDI-----IDRDERDNESCHILSKL 294
             I  PNL  F+          F+D+ S +N F+   +     ++     N S    SKL
Sbjct: 289 --INAPNLQFFDVGG------VFDDV-SFENTFVLALVSIGLYVNVKNDQNVSYGSSSKL 339

Query: 295 LN---ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSI-ISL 350
           L     L  V+ L++ + FL++  + +    +P     L  L + ++  D+   S    L
Sbjct: 340 LRFFVNLPHVRRLEIQSYFLKYLAIGKVPSKLPKPCIDLNYLSIRLNFNDYEENSAAFCL 399

Query: 351 LNCSPNLEALTIYFEGE------------DCDDWKISNKSIFCLTCHLKTVELIHVAGDE 398
           L   PNL+ + I    E            D D WK       CL   L+ V+++ ++G  
Sbjct: 400 LRSCPNLQEIEILARPEEQAVVGPVTDFWDDDHWK-------CLFGQLRLVKIVGISGIR 452

Query: 399 NELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLE 451
           +EL+ ++FLL N  VL+K++   + + E   E++ +++   R+S    +  LE
Sbjct: 453 SELDCIKFLLSNSPVLEKMTIKPVSN-EGGWELVKQLLHFRRASIQAEVFHLE 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562673|ref|NP_175548.4| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75254657|sp|Q6DBN6.1|FDL6_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At1g51370 gi|50198808|gb|AAT70437.1| At1g51370 [Arabidopsis thaliana] gi|53828607|gb|AAU94413.1| At1g51370 [Arabidopsis thaliana] gi|110737690|dbj|BAF00784.1| hypothetical protein [Arabidopsis thaliana] gi|332194537|gb|AEE32658.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 200/441 (45%), Gaps = 38/441 (8%)

Query: 14  DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIW 73
           + DR+  LPEP+I +I   + T D VR SA+S KWRYLW SVP L  D    SSN   I 
Sbjct: 17  EEDRISQLPEPLISEILFHLSTKDSVRTSALSTKWRYLWQSVPGLDLD-PYASSNTNTIV 75

Query: 74  SHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGE 133
           S      FV     S   S  I++ RL    + + Y +  W+ A   R +Q  D+  + +
Sbjct: 76  S------FVESFFDSHRDSW-IRKLRLDLGYHHDKYDLMSWIDAATTRRIQHLDVHCFHD 128

Query: 134 VTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFV 193
             ++P  + TC +L  L+     LR  VL  P  V    LK +   NV + +   L K +
Sbjct: 129 -NKIPLSIYTCTTLVHLR-----LRWAVLTNPEFVSLPCLKIMHFENVSYPNETTLQKLI 182

Query: 194 SSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFL 253
           S   +LE+LIL S  +    +L + S +LK L ++ F         V I  P L      
Sbjct: 183 SGSPVLEELILFSTMYPKGNVLQLRSDTLKRLDINEF-------IDVVIYAPLLQCLR-- 233

Query: 254 ASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLST-AFLR 312
           A       F+ + S   A +  D ++   R  +   ++  +L ++  V+ L +S+  +  
Sbjct: 234 AKMYSTKNFQIISSGFPAKLDIDFVNTGGRYQKK-KVIEDILIDISRVRDLVISSNTWKE 292

Query: 313 FHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYF-------- 364
           F    + R  +   F Y+  L     ++D  +  + +LL   P LE+L +          
Sbjct: 293 FFLYSKSRPLL--QFRYISHLNARFYISD--LEMLPTLLESCPKLESLILEMVKNQSTRR 348

Query: 365 EGEDCDDWKISNKSIFCLTCHLKTVELIH-VAGDENELELVRFLLKNGHVLKKLSFSWME 423
            GE  +   + +   +CL   LK VEL   +   E E+ELVR++L N  VLKKL  +   
Sbjct: 349 HGEKREPNVMVSTVPWCLVSSLKFVELKRSIPRYEGEMELVRYVLTNSTVLKKLRLNVYY 408

Query: 424 DVENRKEIISRIMKLPRSSSN 444
             + +   ++ ++ +PR SS 
Sbjct: 409 TKKAKCAFLTELVAIPRCSST 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447425|ref|XP_002276216.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like [Vitis vinifera]

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 141/507 (27%), Positives = 221/507 (43%), Gaps = 90/507 (17%)

Query: 16  DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDM------------- 62
           DR+  LP+ V+HQI   +    + + S +S++WR LW S P L F               
Sbjct: 23  DRITHLPDAVLHQILLLLPIKTIAQTSVLSKRWRLLWSSFPDLDFTTLNPHCMSCYYFDS 82

Query: 63  ----STISSNPQEIWSHEKFKDFVNWVLLS-QSGS-VSIQRFRLYCLSYANDYTVYRWVC 116
               S++S NP  +       D ++  L + Q GS + + RFR + L ++    + R   
Sbjct: 83  CGGRSSVSPNPNTL-------DCISQTLAAHQRGSDIRVLRFRAH-LGFSRLNGLIR--- 131

Query: 117 AVARRNVQVFDLTV-YGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSV----GFS 171
           +  R NVQ  D+ V   +   LP C+V  ESL+AL L   + R    +LP S+    GF 
Sbjct: 132 SAIRHNVQDLDIDVCTDDYFNLPRCVVMSESLKALSL---KFRPPGFRLPPSMVMRGGFQ 188

Query: 172 RLKSLDL-HNVEFLDHNLLHKFVSSR-RLLEKLILKSCSFRDFKILDISSTSLKSLTLDN 229
            L++L L H V +  H LL  F  S   +L KL L SC  R  K LD+    L+ LT++N
Sbjct: 189 SLQTLSLSHMVFYKKHYLLDLFAGSAFPVLRKLTLDSC--RGIKFLDVGCRVLQDLTVEN 246

Query: 230 --------FGGD-----------ESGNYK--VKIACPNLVSFNFLASWAPDFA-FEDLDS 267
                     G            ES + K  VKI  P L   ++  +   + +  E+L S
Sbjct: 247 CFQLHGLTVSGPRLERLRVVSCFESSSEKSWVKIIAPRLRVMHWEHNAITETSCLENLAS 306

Query: 268 LQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSF 327
           ++ AFI F  +D D R  E    +S +L+ L     L L +  ++            + F
Sbjct: 307 MEEAFIGFFALDEDTRA-EKYKSVSNILSGLSHAHCLTLQSQCIQILSNNHYSTISLHPF 365

Query: 328 NYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTI----YFEGEDCDDWKIS-------- 375
           + LK++ L   +    +  ++ L   SP L  L +    +F+ E    W  +        
Sbjct: 366 HNLKTMKLHTVLDKNNIRGLLCLFRSSPTLHTLILKIITHFKAEKTKAWNKALWDHMSSS 425

Query: 376 ---------NKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKL----SFSWM 422
                    +++      HLK V +  +   ENE+ L++FLLK+G  L+++      S  
Sbjct: 426 EQEQYWESRSQTFKSFLQHLKVVRMEGLVESENEIGLIKFLLKHGMALQEMILCSGHSNS 485

Query: 423 EDVENRKEIISRIMKLPRSSSNVALEF 449
            D   R EI S++M    +SSN  L F
Sbjct: 486 RDPVRRHEIRSQMMGFSWASSNAKLAF 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219162|ref|NP_177997.1| putative F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75268063|sp|Q9ZV94.1|FDL11_ARATH RecName: Full=Putative F-box/FBD/LRR-repeat protein At1g78760 gi|3834318|gb|AAC83034.1| Similar to gi|2244754 heat shock transcription factor HSF30 homolog from Arabidopsis thaliana chromosome 4 contig gb|Z97335 [Arabidopsis thaliana] gi|332198026|gb|AEE36147.1| putative F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 211/462 (45%), Gaps = 41/462 (8%)

Query: 9   KCREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSN 68
           + R  + DRL +LPE +I QI   + T DVV++S +S++WR LW  VP L+ + +     
Sbjct: 9   RARRSEEDRLSNLPESLICQIMLNIPTKDVVKSSVLSKRWRNLWRYVPGLNVEYN----- 63

Query: 69  PQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYT---VYRWVCAVARRNVQV 125
             +   +  F  FV+  L     S   Q FRL       + T   V RW+  V  + ++V
Sbjct: 64  --QFLDYNAFVSFVDRFLALDRESC-FQSFRLRYDCDEEERTISNVKRWINIVVDQKLKV 120

Query: 126 FDLTVY---GEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVE 182
            D+  Y    E  ++P  + TCESL +LKL        +L  P  +    +K ++L  V+
Sbjct: 121 LDVLDYTWGNEEVQIPPSVYTCESLVSLKLC-----NVILPNPKVISLPLVKVIELDIVK 175

Query: 183 FLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESG--NYKV 240
           F +  +L K +SS   LE LI+   S  D  +L +SS SL  L+  + G    G    +V
Sbjct: 176 FSNALVLEKIISSCSALESLIISRSSVDDINVLRVSSRSL--LSFKHIGNCSDGWDELEV 233

Query: 241 KIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDE----RDNESCHILSKLLN 296
            I  P L   N        F  ++  SL  A I   I + +E     D     ++   L 
Sbjct: 234 AIDAPKLEYLNISDHSTAKFKMKNSGSLVEAKINI-IFNMEELPHPNDRPKRKMIQDFLA 292

Query: 297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPN 356
           E+  VK L +S+  L    V+ + G     F  L S  L +   D  +  + + L   PN
Sbjct: 293 EISSVKKLFISSHTLE---VIHDLGCELPLFRNLSS--LHIDFEDHTLKMLSTFLQSCPN 347

Query: 357 LEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH----VAGDENELELVRFLLKNGH 412
           +++L + F+    +D    ++ +    C   T+E +     + G+   +++V ++L+N  
Sbjct: 348 VKSLVVEFKDSSKED---GDRVLSIPRCFFTTLEYVKIERPITGEARGMKVVSYILENSP 404

Query: 413 VLKKLSFSWMEDVENRKEII-SRIMKLPRSSSNVALEFLEPK 453
           +LKKL+       E  + +I   ++ +PR S++  +   EP+
Sbjct: 405 ILKKLNLCLNSSREKSESVILKELLTIPRLSTSCKVVVFEPR 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538530|ref|XP_002510330.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223551031|gb|EEF52517.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 212/467 (45%), Gaps = 64/467 (13%)

Query: 6   ESPK--CREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMS 63
           E PK  C E + DR+ SLP  V+ QI S +   D VR SA+SRKWRY W  +P+L FD  
Sbjct: 4   EPPKFPCLETELDRISSLPGHVLDQILSQLSIRDAVRTSALSRKWRYKWAKIPHLVFDNK 63

Query: 64  TISSNPQ-EIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRN 122
            +S   Q +    +K  + ++ VLL  +G   IQ+F+L          + RW+  ++R +
Sbjct: 64  CVSIPSQDQTLIKDKLVNIIDHVLLLHNG--PIQKFKLSHRDLLGVSDIDRWILHLSRSS 121

Query: 123 VQVFDLTVY-GEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSV-GFSRLKSLDLHN 180
           ++ F L ++ G+  ++P  L + E L  L+L       C+L+ P +  GF  LKSLDL +
Sbjct: 122 IKEFILEIWKGQRYKVPSSLFSFEHLIHLELFN-----CLLQPPLTFKGFRSLKSLDLQH 176

Query: 181 VEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKV 240
           +  L  N+    + S  LLE+                       LTL NF G    N   
Sbjct: 177 IT-LTQNVFENLIFSCPLLER-----------------------LTLMNFDGFTHLN--- 209

Query: 241 KIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERD--NESCHILSKLLNEL 298
            I  PNL  F+    +  D  FE+   L    I   +  +++R+  + S   L +    L
Sbjct: 210 -INAPNLQFFDIGGVYD-DVTFENTFQLTLVSIGLYVNVQNDRNVGHGSSSKLLRFFANL 267

Query: 299 CEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPS-IISLLNCSPNL 357
             ++ L++ + FL++  +      +P     L  L + ++  D    S  + LL  SPN+
Sbjct: 268 PHIRRLEVQSYFLKYLSIGNVPSRLPKPCFDLNYLSIRINFNDLEENSAALCLLRSSPNV 327

Query: 358 EALTIYFEGEDC------------DDWKISNKSIFCLTCHLKTVELIHVAGDENELELVR 405
           + L +    E+             D W         L   L+ V ++ ++G   EL+ + 
Sbjct: 328 QELEMLARPEEQTSLGTITNFWEDDHWN-------NLFGQLRLVRIVGISGIRCELDFMN 380

Query: 406 FLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLEP 452
           FLL N  VL++++       +   E+I  +++  R+S+   + +L+P
Sbjct: 381 FLLSNSPVLERMTVKPASS-DGGWELIKELLRFRRASARAEIIYLDP 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564235|ref|XP_003550361.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine max]

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 210/460 (45%), Gaps = 53/460 (11%)

Query: 6   ESPKCREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTI 65
            SP   + + DR+  LP  VI Q+ S +   + VR S +S KWRY W ++P L FD   +
Sbjct: 7   RSPCLTDVEPDRISCLPGHVIDQVLSHLSIREAVRTSVLSSKWRYKWATLPILVFDTHCV 66

Query: 66  SSNPQE-IWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQ 124
           S   Q+ +    K    ++ VLL  SG   I +F+L          + RW   + R++++
Sbjct: 67  SVASQDHMIIKNKLLRIIDHVLLLHSGP--INKFKLSHRDLIGVTDIDRWTLHLCRKSIK 124

Query: 125 VFDLTVY-GEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSV-GFSRLKSLDLHNVE 182
            F L ++ G+  ++  CL +C+SL  L+L       C LK P +  GF  LKSLDL +V 
Sbjct: 125 EFVLEIWKGQRYKIHSCLFSCQSLTHLELF-----NCWLKPPSTFQGFKNLKSLDLQHVT 179

Query: 183 FLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKI 242
            L  ++    +SS  LLE+L                       TL NF G  + N    I
Sbjct: 180 -LAQDVFENLISSCPLLERL-----------------------TLMNFDGFTNLN----I 211

Query: 243 ACPNLVSFNFLASWAPDFAFEDLDSLQ----NAFIFFDIIDRDERDNESCHILSKLLNEL 298
             PNL+ F+    +  D +FE+   L       ++ F+I     R +     L K    L
Sbjct: 212 DAPNLLFFDIGGKFE-DISFENTFQLAVVSIGLYLNFEI--NQSRLHGGSSNLLKFFVHL 268

Query: 299 CEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWV-VPSIISLLNCSPNL 357
             V+ L++ + FL++  V      +P     L  L + ++  D   + + + LL  SPNL
Sbjct: 269 PHVQRLEVQSYFLKYLAVGVVPIKLPRPCIDLSYLSIRINFNDLKEISASLCLLRSSPNL 328

Query: 358 EALTIYFEGED-----CDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGH 412
           + L I    E+        +   +    C    L+ V++  ++G + EL+ + FLL +  
Sbjct: 329 QELEILARPEEQTVLLTHTYCWEDVYFSCPVMQLRYVKIDGISGIKPELDFINFLLLHSP 388

Query: 413 VLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLEP 452
           VL++++   + +V    E++  +++  R+S    + +LEP
Sbjct: 389 VLERMTVKPVANVG--LELMKELLRFRRASGQAEIIYLEP 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
TAIR|locus:2037558	452	AT1G78760 "AT1G78760" [Arabido	0.921	0.940	0.267	9.8e-32
TAIR|locus:2157922	444	AT5G53840 "AT5G53840" [Arabido	0.876	0.909	0.270	1.2e-25
TAIR|locus:505006456	468	AT4G14096 "AT4G14096" [Arabido	0.880	0.867	0.289	5.5e-23
TAIR|locus:2162484	466	AT5G22730 "AT5G22730" [Arabido	0.893	0.884	0.261	1.2e-22
TAIR|locus:2162489	450	AT5G22660 "AT5G22660" [Arabido	0.895	0.917	0.261	2.3e-22
TAIR|locus:2081242	504	AT3G59240 "AT3G59240" [Arabido	0.915	0.837	0.280	2.4e-22
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.436	0.483	0.306	7.2e-22
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.893	0.899	0.277	1.1e-21
TAIR|locus:2052362	443	AT2G42720 "AT2G42720" [Arabido	0.882	0.918	0.275	6.1e-21
TAIR|locus:2101674	427	AT3G50710 "AT3G50710" [Arabido	0.867	0.936	0.281	6.5e-21

TAIR|locus:2037558 AT1G78760 "AT1G78760" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 124/464 (26%), Positives = 210/464 (45%)

Query:     6 ESPKCREDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTI 65
             +  + R  + DRL +LPE +I QI   + T DVV++S +S++WR LW  VP L+ + +  
Sbjct:     6 DEKRARRSEEDRLSNLPESLICQIMLNIPTKDVVKSSVLSKRWRNLWRYVPGLNVEYN-- 63

Query:    66 SSNPQEIWSHEKFKDFVNWVLLSQSGSVSIQRFRL-Y-CLSYANDYT-VYRWVCAVARRN 122
                  +   +  F  FV+  L     S   Q FRL Y C       + V RW+  V  + 
Sbjct:    64 -----QFLDYNAFVSFVDRFLALDRESC-FQSFRLRYDCDEEERTISNVKRWINIVVDQK 117

Query:   123 VQVFDLTVY---GEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLH 179
             ++V D+  Y    E  ++P  + TCESL +LKL C      +L  P  +    +K ++L 
Sbjct:   118 LKVLDVLDYTWGNEEVQIPPSVYTCESLVSLKL-CN----VILPNPKVISLPLVKVIELD 172

Query:   180 NVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESG--N 237
              V+F +  +L K +SS   LE LI+   S  D  +L +SS SL  L+  + G    G   
Sbjct:   173 IVKFSNALVLEKIISSCSALESLIISRSSVDDINVLRVSSRSL--LSFKHIGNCSDGWDE 230

Query:   238 YKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAXXXXXXXXXX---ERDNESCHILSKL 294
              +V I  P L   N        F  ++  SL  A               D     ++   
Sbjct:   231 LEVAIDAPKLEYLNISDHSTAKFKMKNSGSLVEAKINIIFNMEELPHPNDRPKRKMIQDF 290

Query:   295 LNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCS 354
             L E+  VK L +S+  L    V+ + G     F  L SL   +   D  +  + + L   
Sbjct:   291 LAEISSVKKLFISSHTLE---VIHDLGCELPLFRNLSSL--HIDFEDHTLKMLSTFLQSC 345

Query:   355 PNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHV----AGDENELELVRFLLKN 410
             PN+++L + F+    +D    ++ +    C   T+E + +     G+   +++V ++L+N
Sbjct:   346 PNVKSLVVEFKDSSKED---GDRVLSIPRCFFTTLEYVKIERPITGEARGMKVVSYILEN 402

Query:   411 GHVLKKLSFSWMEDVENRKEIISR-IMKLPRSSSNVALEFLEPK 453
               +LKKL+       E  + +I + ++ +PR S++  +   EP+
Sbjct:   403 SPILKKLNLCLNSSREKSESVILKELLTIPRLSTSCKVVVFEPR 446

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157922 AT5G53840 "AT5G53840" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 119/440 (27%), Positives = 196/440 (44%)

Query:    16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
             +RL  LP+ +I  I S + T D VR S +S +WR LW  VP L FD        +E+ S 
Sbjct:    18 ERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDS-------RELRSF 70

Query:    76 EKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVY--GE 133
              +F  F          S  IQ+ R+     A +Y +  W+  V R  +Q  D++V+    
Sbjct:    71 SEFVSFAGSFFYLHKDSY-IQKLRVCIYDLAGNYYLTSWIDLVTRHRIQHIDISVFTCSG 129

Query:   134 VTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFV 193
                +P  L TC++L  LKL+    R+ ++ + F V    LK LDL  V F +   L K +
Sbjct:   130 FGVIPLSLYTCDTLVHLKLS----RVTMVNVEF-VSLPCLKILDLDFVNFTNETTLDKII 184

Query:   194 SSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFL 253
             S   +LE+L +   S  + KI+ + S +LK + +       +G   + I  P L   +  
Sbjct:   185 SCSPVLEELTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNG---LVIDTPLLQFLSIK 241

Query:   254 ASWAPDFAFEDLDSLQNAXXXXXXXXXXERDNESCHILSKLLNELCEVKALKLSTAFLR- 312
             A       F +L                +  N S  +       +  V++L +    ++ 
Sbjct:   242 AHSIKSIEFINLGFTTKVDIDVNLLDPNDLSNRS--MTRDFFTTISRVRSLVIRHGTIKD 299

Query:   313 -FHFVLEERGFIP-NSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIY---FEGE 367
              FH++  E    P   F YL  L    S+++  +  +++LL   P LE+L++    +E  
Sbjct:   300 IFHYMELE----PLQQFCYLSELSAVCSISN--LEMLLNLLKSCPKLESLSLKLVDYEKN 353

Query:   368 DCDDWKISNKSIFCLTCHLKTVEL-IHVAGDENELELVRFLLKNGHVLKKLSFS--WM-E 423
               ++   S     CL   LK V+L   + G   EL++ R+ L+N  +L+KL+    +M +
Sbjct:   354 KKEEVMSSTVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTLKIDYMYK 413

Query:   424 DVENRKEIISRIMKLPRSSS 443
             D  N   I   +  +PR SS
Sbjct:   414 DEANVNHIRQTLHAVPRCSS 433

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:505006456 AT4G14096 "AT4G14096" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 5.5e-23, P = 5.5e-23
 Identities = 129/446 (28%), Positives = 197/446 (44%)

Query:    16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQ-EIWS 74
             D + SLPE +   I SF+ T +    S +S+KWRYL+  VP L  D S +  NP+ E   
Sbjct:     8 DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDES-VYLNPENETEV 66

Query:    75 HEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEV 134
                F DFV+ VL  Q G+  + +F L          +  W+  V  R V   DL VY E 
Sbjct:    67 SSSFMDFVDRVLALQ-GNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSDLDLHVYME- 124

Query:   135 TEL--PHCLVTCESLEALKLACRQLRMCVLKLPFS-VGFSRLKSLDLHNVEFLDHNL-LH 190
             TE   P  +   ++L  LKL    L      L F  V   +LK+L + +  F  + + L 
Sbjct:   125 TEFVFPSEMFLSKTLVRLKLMLYPL------LEFEDVYLPKLKTLYIDSCYFEKYGIGLT 178

Query:   191 KFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSF 250
             K +S   +LE L+L    +  +    +S  +LK LT      DE     V I  PNLV  
Sbjct:   179 KLLSGCPILEDLVLDDIPWCTWDFASVSVPTLKRLTFSTQVRDEFPK-SVSIDTPNLVYL 237

Query:   251 NFLASWAPDFAFEDLDSLQNAXXXXXXXXXXER--DNESCHILSKLLNELCEVKALKLST 308
              F  + A  +   + DSL  A          +   +N+     +  +  +C VK L LS+
Sbjct:   238 KFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVGNATDFIMRICNVKTLYLSS 297

Query:   309 AFLRFHFVLEERGFIPNSFNYLKSLVL-SVSMADWVVPSIISLLNCSPNLEALTIYFEG- 366
               L+   +      IP  FN L  L + S     W   S+  LL  SPNLE  T+ F+G 
Sbjct:   298 NTLQV--LTYSCDAIP-IFNNLTHLTIESNPEVGW--QSLPGLLKNSPNLE--TLIFQGL 350

Query:   367 -----EDCDD---WKISNKSIFCLTCH-LKTVELI---HVAGD-ENELELVRFLLKNGHV 413
                  + C D    K   +   CL    +K ++++    ++ D E + E +++ L+    
Sbjct:   351 IHKATDKCGDVCLCKPREEIRSCLASSPVKVIKILKFGEISDDMEKQREQIKYFLETMPN 410

Query:   414 LKKLSFSW-MEDVENRKEIISRIMKL 438
             L+K+   +    VE+  E+ SR+ +L
Sbjct:   411 LEKMILYYNTTSVEDVTEVSSRLQRL 436

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162484 AT5G22730 "AT5G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 117/448 (26%), Positives = 205/448 (45%)

Query:    16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
             D +  LP+ +I QI  ++   D+VR S++S +W+ LWL +P L  D        +E   +
Sbjct:    28 DLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDS-------EEFQDY 80

Query:    76 EKFKDFVN-WVLLSQSGSVSIQRFRLYCLSYANDYT-VYRWVCAVARRNVQVFDLTVYGE 133
               F  F+N ++  S    + + + +L      ND   V RW+  V RR ++  D+     
Sbjct:    81 NAFVGFMNKFIDFSGEEKICLDKLKLSSRKTVNDLPCVTRWIDFVVRRKLKHLDVECLVN 140

Query:   134 ---VTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLH 190
                + E+P  L  C++L  L+L     R+ + K   +V    LK++ L    + +  +L 
Sbjct:   141 RKFLEEMPLSLYVCDTLVNLRLH----RVLLGKFE-AVSLPCLKTMRLEENVYANDVVLE 195

Query:   191 KFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLD-NFG-GDE--SGNYK----VKI 242
               +SS  +L+ LI+      + K+L + S +L SL +D NFG GD+   G  K    V I
Sbjct:   196 SLISSCPVLKDLIILRMFEDNVKVLRVHSLTLTSLNIDFNFGEGDDFVDGFDKKVSGVLI 255

Query:   243 ACPNLVSFNFLASWAPDFAFEDLDSLQ--NAXXXXXXXXXXER-DNESCHILSKLLNELC 299
               P L    F    +      +  SL   N           +  D    +++   L  + 
Sbjct:   256 DAPRLKYLKFQDDLSGSKIITNSGSLAKVNVVYVFNENDCADVVDIPRRNMVRNFLTSIS 315

Query:   300 EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADW-VVPSIISLLNCSPNLE 358
              V  +K+S  F+ F +  ++   +P   N L  L   +S+    ++P+I+   +C PNL+
Sbjct:   316 GVSDMKISQHFVEFLYYYKDFDPLPQFCN-LSRLKAEISLYFLEILPTILE--SC-PNLK 371

Query:   359 ALTIYFEG--EDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKK 416
             +L +  E   ++ D+  I +    CL   L++VE+    G   ++E+ R+ L+N  VL+K
Sbjct:   372 SLVMVLEFYLQEEDEPIIFSSVPRCLVSSLESVEIKKFNGRPAKMEVARYFLENSGVLQK 431

Query:   417 LSFSWMEDV-ENRKEIISRIMKLPRSSS 443
             L         E+   I+  ++ LPR SS
Sbjct:   432 LVLHLRCSTHEDGFYILKDLLALPRGSS 459

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162489 AT5G22660 "AT5G22660" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 118/452 (26%), Positives = 199/452 (44%)

Query:    11 REDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQ 70
             R    DR+ SLP+ ++ QI S + T + V  S +S +W+ LWLS P L  D+        
Sbjct:     8 RRSGEDRISSLPDHLLSQILSNLPTENAVTTSILSTRWKDLWLSTPVLDIDIDAFDDATT 67

Query:    71 EIWSHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVF--DL 128
              I    +F D      L +   +S Q      +   + +T+  W+    +R +Q    D 
Sbjct:    68 FISFATRFLDSFKDSCLHKL-QISFQ------MEAVDMWTIIPWIEDAVKRRIQHLEVDS 120

Query:   129 TVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNL 188
              +   +  LP  +   ESL +L+L    L   V      V    LK + L    +     
Sbjct:   121 RIDHMIDTLPLTVYLSESLVSLRLHLVMLHRFVF-----VSLPNLKVMHLEENIYSYAET 175

Query:   189 LHKFVSSRRLLEKL-ILKSCSFRDFKILDISSTSLKSLTL--DN---FGGDESGNYKVKI 242
             + KF+SS  +LE L ++++      K+L +SS SL SL L  D+   +  D+S ++KV I
Sbjct:   176 MEKFISSCPVLEDLTVVRNVDEATEKVLRVSSQSLNSLKLVIDSSKCWYNDDSDDWKVVI 235

Query:   243 ACPNLVSFNFLASWAPDFAFEDLDSLQNAXXXXXXXXXXERDNESCHILS---KLLNELC 299
               P LV  +     +  F   +L S   A            D E     S   K L  L 
Sbjct:   236 DAPQLVYLSLKDDQSVSFVINNLCSSAKADIKVSFNVSDIWDLEESFERSNVGKFLTGLS 295

Query:   300 EVKALKLSTAFLRF--HFVLEERGFIPNSFNYLKSLVLSVSMADW-VVPSIISLLNCSPN 356
              ++ + +S   L+   H++  E   +P  F  +  L     + D  ++P ++   +C PN
Sbjct:   296 SLRDMTISGTTLKIICHYLKHEP--MPQ-FRNMTRLHAKFYVCDLEMLPCVLE--SC-PN 349

Query:   357 LEALTIYFEGE-DCDDWKISNKSIFCLTCHLKTVELIHVA-GDENELELVRFLLKNGHVL 414
             L++L +  +GE + ++  +S+    CL   L+ VE+I    G   E++L ++ L+N  VL
Sbjct:   350 LKSLVLKLKGEMENEEISLSSSVPKCLQSSLENVEIIRPNYGSGEEMKLSKYFLENSLVL 409

Query:   415 KKLSFSWMEDVENRKE---IISRIMKLPRSSS 443
             KK  F    D  + ++   ++  +M   R SS
Sbjct:   410 KK--FKLCRDCHSEEQESLVVRELMTFQRCSS 439

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081242 AT3G59240 "AT3G59240" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 130/463 (28%), Positives = 205/463 (44%)

Query:    16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWS- 74
             D +  LPE +I  + SF+ T +    S +S KWRYL+   P L FD S    +P    + 
Sbjct:     8 DIISDLPEALICHLLSFVPTKEAALTSLLSEKWRYLFAFAPILDFDDSVWMQSPLVYMNE 67

Query:    75 -HEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTV-YG 132
              H KF DFV+ VL  Q G+ ++ RF L C +  +   ++RW+  V  R V   DL   + 
Sbjct:    68 VHRKFMDFVDRVLGLQ-GNSTLVRFSLNCRNGIDRECIFRWISNVIERGVSDLDLGGNFV 126

Query:   133 EVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNL-LHK 191
                 +P  +   +SL  +KL  R     ++ L   V   +LK+LDL ++ F D +  L K
Sbjct:   127 SNRSMPSSVFVSKSL--VKLRIRTENCTIIDLE-DVFLPKLKTLDLSSIWFRDGDTCLLK 183

Query:   192 FVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFN 251
              +S  ++LE L +    +  +    +SS +LK LT+     D S    +    PNLV F 
Sbjct:   184 LISGCQVLEDLTMSDLWWDGYWNRSMSSKTLKRLTVHCSDWDRSPG-SISFDTPNLVYFE 242

Query:   252 FLASWAPDFAFEDLDSLQNAXXXXXXXXXXERDNESCHILSKLLNELCEVKALKLSTAFL 311
             +    A  +   + DSL  A                  ++    N    +  +++   F 
Sbjct:   243 YFDLVADKYEVVNFDSLVEASIGLRMRHHQRAHASYGDLVVNATNLFMGISNVRILQLFS 302

Query:   312 RFHFVLEERGFIPNSFNYLKSLV-LSVSM-ADWVVPSIISLL-NCSPNLEALTIYFEG-- 366
                  LE   F        K L+ L+V    D    S+ +LL NC PNLE  T+ F+G  
Sbjct:   303 N---ALEVLTFCCAPIPVFKKLIHLTVETDKDVGWESLPALLKNC-PNLE--TLVFKGLH 356

Query:   367 ----EDCDDWK----ISNKSI-FCLTCH----LKTVELIHVA---GDEN-ELELVRFLLK 409
                   C D       S+K I  CL+      LK ++   VA   GDE  +LELV++ L+
Sbjct:   357 HRSTSKCQDTDGCLCKSSKDIRSCLSSSPVKVLKILKFGEVASYFGDEEKQLELVKYFLE 416

Query:   410 NGHVLKKLSFSWMEDV-ENRKEIISRIMKLPR-SSSNVALEFL 450
                 L+++   +   + E  K  +  ++  PR SSS  +++ +
Sbjct:   417 TMPNLEQMILHYNTRISEGVKSQLDWLV--PRVSSSKCSVQLI 457

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
 Identities = 66/215 (30%), Positives = 101/215 (46%)

Query:    16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
             D +  LP+ +I  I + +   D +R S +S KWRY W ++  L FD   +S +       
Sbjct:     6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVE 65

Query:    76 EKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTV-YGEV 134
                  F+  VLL   G   I +F+L          + +W+  ++R  ++   L +  GE 
Sbjct:    66 TNLVRFITGVLLLHQGP--IHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGEF 123

Query:   135 TELPHCLVTCESLEALKLACRQLRMCVLKLP-FSVGFSRLKSLDLHNVEFLDHNLLHKFV 193
               +P CL  C     LKL C +L  C    P +  GFS LKSL+LH +  +   ++   +
Sbjct:   124 -RVPACLFNC-----LKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQI-LVAPEVIESLI 176

Query:   194 SSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLD 228
             S   LLE L   S S+ D  +L IS+ +L  L LD
Sbjct:   177 SGCPLLEFL---SLSYFDSLVLSISAPNLMYLYLD 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 125/450 (27%), Positives = 201/450 (44%)

Query:    16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWS- 74
             D + +LPE ++ Q+  ++ T DVV++S +S +WR LW  VP   F++S    + +  +S 
Sbjct:    18 DWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVP--GFNLSYCDFHVRNTFSY 75

Query:    75 -HEKFKDFVNWVLLSQSGSVSIQRFRL-YCLS-YANDYT--VYRWVCAVARRNVQ---VF 126
              H  F  FV+  +   S S  +Q FRL Y  S Y       + RW+ +V  R V+   V 
Sbjct:    76 DHNTFLRFVDSFMGFNSQSC-LQSFRLEYDSSGYGEPKLALIRRWINSVVSRKVKYLGVL 134

Query:   127 DLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDH 186
             D +      E+P  L TCE+L  L L    L       P  V    LK L L  V+F DH
Sbjct:   135 DDSCDNYEFEMPPTLYTCETLVYLTLDGLSLAS-----PKFVSLPSLKELHLSIVKFADH 189

Query:   187 NLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIA--C 244
               L   +S   +LE L +      DF+   + S SL S T      DE  N  + +A   
Sbjct:   190 MALETLISQCPVLENLNINRSFCDDFEFTCVRSQSLLSFT-HVADTDEMLNEDLVVAIDA 248

Query:   245 PNLVSFNFLASWAPDFAFEDLDSLQNAXXXXXXXXXXER-----DNESCHILSKLLNELC 299
             P L            F   DL SL  A          ++     D    +++   L  + 
Sbjct:   249 PKLKYLRLSDHRIASFILNDLASLVEADIDTVFNLICKKMFNPNDLNKRNMIRDFLVGIS 308

Query:   300 EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADW-VVPSIISLLNCSPNLE 358
              +K L ++++ L   +       +P  F  L SL +      W ++P  I L +C PNL+
Sbjct:   309 SIKTLIIASSTLEVIYDYSRCEPLP-LFRNLSSLRVDFYGYKWEMLP--IFLESC-PNLK 364

Query:   359 ALTI----YFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVL 414
             +L +    Y E E  +   +    +  L  ++K +E   + G+  E++LV +LL+N  +L
Sbjct:   365 SLVVGSANYREKEGINILSVPRGFLSSLE-YVK-IER-PLKGEAMEMKLVSYLLENSTIL 421

Query:   415 KKLSFSWMEDVENRKEIISRIMK-LPRSSS 443
             KKL+    + ++  + +I + +  +PR SS
Sbjct:   422 KKLTLCLDDSIKKEESVILKELNTIPRLSS 451

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2052362 AT2G42720 "AT2G42720" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 6.1e-21, P = 6.1e-21
 Identities = 128/465 (27%), Positives = 207/465 (44%)

Query:    16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
             DR+ SLP+ ++  I SF+ T +    S++S +W+ +++ VP L  D +    NP+E    
Sbjct:     2 DRISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSLHLDYARQHENPREFID- 60

Query:    76 EKFKDFVNWVLLSQSGSVSIQRFRLYC-----LSYANDYTVYRWVCAV-ARRNVQVFDL- 128
               F DFVN  L ++ G+  I++  L        S  N   V  W+  V +R  V   DL 
Sbjct:    61 --FVDFVN-TLFNRKGNSPIKKLALKIHLKDNQSLQNQTHVQSWIHRVLSRGGVTDLDLF 117

Query:   129 -TVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPF-SVGFSRLKSLDLHNVEFL-D 185
              T  G+   +P  +    +L  L+L     R   +KL   +V    LK+L L  V+F  D
Sbjct:   118 ITFKGKFQLVPLLIFKSNTLVKLRLG----RGFTIKLCHENVYLPMLKTLCLDTVDFDGD 173

Query:   186 HNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACP 245
             HN+    +    LLE+L+L+   ++ +    +SS SLK L +  F         + +  P
Sbjct:   174 HNVFETLLPRCPLLEELVLEDQRWKQW-CGSVSSPSLKRLRIRFFHIPI-----ISLDVP 227

Query:   246 NLVSFNFLASWAPDFAFEDLDSLQNAXXXXXXXXXXERD--NESCHI----LSKLLNELC 299
              LV       +   +A  +LDSL  A           R   + S H+    +  L+  + 
Sbjct:   228 GLVYLELSCIFGSKYANVNLDSLVEARLNHWVEEQELRKLRDGSSHLVPADMMDLITGIR 287

Query:   300 EVKALKLSTAFLR-FHFVLEERGFIPNSFNYLKSLVLSVSMADW-VVPSIISLLNCSPNL 357
             +VK L L++  L  F+F  +E     N   YL   + S     W ++P +I   N SPNL
Sbjct:   288 KVKVLHLTSDALELFYFSGQELPMFDNLV-YLS--IASDKKQGWQILPLLIK--N-SPNL 341

Query:   358 EALTI----YFEGEDCDDWKISN----KSIFCLTC-HLKTVELIHVAGDENELELVRFLL 408
             E L      ++  + C D  + +    KS  CL+   +K +E+    G   EL+ +    
Sbjct:   342 ETLVFKGLEHYTTKQCGDACVCSGILGKSSSCLSSSRVKVLEIWSYQGTSKELKQM---- 397

Query:   409 KNGHVLKKLSFSWMEDVENRKEI-----ISRIMKLPRSSSNVALE 448
               GH L KL F  +  +     +     I  ++KLPR+SSN  ++
Sbjct:   398 --GHFLMKLQFLELVKIRAVSNLQVPIDIQYLLKLPRASSNCKIQ 440

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2101674 AT3G50710 "AT3G50710" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 6.5e-21, P = 6.5e-21
 Identities = 128/455 (28%), Positives = 201/455 (44%)

Query:    16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWSH 75
             DR+ +L + ++ +I S + T DVV    +S++W++LW+ VP L FD       P      
Sbjct:     2 DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFD-DEFELEPSYYGRF 60

Query:    76 EKFKDFVNWVLLSQSGSVSIQRFRLY-CLSYANDYTVYRWVCAVARRNVQVFDLT-VYGE 133
              K+ D    ++L+++  +   +F +  C S + D  +  W+     RN++  +++   G 
Sbjct:    61 LKYVD--KSMVLNRAQVLETVKFNVGPCCS-SED--IATWIRIGMVRNMRELEISHCEGY 115

Query:   134 VTE-----LPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNL 188
               E     LP  L T E LE LKLA       VL +P  V F  LKSL L  VE+     
Sbjct:   116 FREHRSIKLPKSLYTYEKLEVLKLAST----VVLNVPIDVCFPSLKSLHLVCVEYKTKKS 171

Query:   189 LHKFVSSRRLLEKLILKSCSFRDFKILD--ISSTSLKSLTLDNFGGDESGNYKVKIACPN 246
               + +S   +LE+L+L   S+  F +    +   +L+SL++ +  G+  G++   +  P 
Sbjct:   172 HRRLLSGCPVLEELVLDK-SYNSFHVRSFYVEIPTLQSLSILDTSGELYGDFTFVVNAPA 230

Query:   247 LVSFNFLASWAPDFAFEDLDSLQNAXXXXXXXXXXERDNESCHILSKLLNELCEVKALKL 306
             L  FNF+     DF + DL    N              N       KLL  L  VK L L
Sbjct:   231 LKYFNFV-----DF-YGDLCLRDNMPEVVDVNIKVIYRNPK-----KLLGPLKSVKRLSL 279

Query:   307 STA-FLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIY-- 363
               +     H  +E        F  L  L L      W    +  +L  SP L+ L IY  
Sbjct:   280 CLSPSTTLHNHME--------FYQLVHLELCGDALMWW-DLLTWMLQSSPKLQVLKIYEC 330

Query:   364 -FEGED-CDD-----WKISNKSIFCLTCHLKTVELIHV-AGDENELELVRFLLKNGHVLK 415
               E  D  DD     W+  +    CL  HL   E  +  AGDE E ++V ++LKN   LK
Sbjct:   331 KCEEHDYLDDPIEEHWEEPSSVPQCLLFHLNIFEWKYYNAGDE-EKKVVAYILKNARQLK 389

Query:   416 KLSFS---WMEDVENRKEIISRIMKLPRSSSNVAL 447
               +FS   ++   E R   ++ ++ + R+SS+  L
Sbjct:   390 TATFSAASYLYPKEERSRELNELVYMARASSSCQL 424

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	461
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	6e-10
pfam08387	51	pfam08387, FBD, FBD	3e-08
pfam00646	48	pfam00646, F-box, F-box domain	1e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	2e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	1e-04

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 54.8 bits (133), Expect = 6e-10
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 381 CLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRK-EIISRIMKLP 439
           CL   L+ +E+    G E E ELV++ L+N   LKKL+ S     +  K EI+  ++ LP
Sbjct: 2   CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLP 61

Query: 440 RSSSNVALEFL 450
           R+SS+  ++FL
Sbjct: 62  RASSSCQVQFL 72

Length = 72

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 372 WKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS 420
           W   +    CL   L+TVE     G+E ELEL +++L+N  VLKK++ S
Sbjct: 2   WNQPSSVPECLLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTIS 50

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVP 56
            L  LP+ ++ +I S ++  D++R S VS++WR L  S+ 
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLK 41

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 18 LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL 51
          L  LP+ ++ QIFS+++  D++R + V R+WR L
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 21 LPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPY 57
          LP+ ++ +I S ++  D++R   VSRKWR L  S  +
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.66
KOG4341	483	consensus F-box protein containing LRR [General fu	99.5
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.39
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.25
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.18
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	99.17
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.94
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.55
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.54
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.44
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.44
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.35
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.34
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.25
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.19
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.18
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.95
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.79
KOG4341	483	consensus F-box protein containing LRR [General fu	97.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.38
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.3
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.26
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.17
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.16
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.99
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.75
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.67
PLN03150	623	hypothetical protein; Provisional	96.65
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.61
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.45
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.41
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.4
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.95
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.75
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.44
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.36
PLN03150	623	hypothetical protein; Provisional	95.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	94.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	94.81
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.14
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	93.02
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.19
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	89.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	89.52
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	88.7
PF13013	109	F-box-like_2: F-box-like domain	86.5
PRK15386	426	type III secretion protein GogB; Provisional	85.57
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	85.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	84.22
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.52
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	82.87
PRK15386	426	type III secretion protein GogB; Provisional	82.54

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.2e-17  Score=147.61  Aligned_cols=167  Identities=25%  Similarity=0.289  Sum_probs=110.2

Q ss_pred             CCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhccC---CeeEeecCCcCCCccchhcHhHHHHHHHHHHhcCCCCCc
Q 012562           18 LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSV---PYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVS   94 (461)
Q Consensus        18 is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~   94 (461)
                      +..|||||+..||+.|+.++..+++.|||||.++-..-   ..++.......            .+...+.+ ++    .
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~------------p~~l~~l~-~r----g  160 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH------------PDVLGRLL-SR----G  160 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC------------hhHHHHHH-hC----C
Confidence            67899999999999999999999999999999753221   11333333322            11222222 22    2


Q ss_pred             ccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeee-CCCCcccCCCccEEEeceeccccccccCC---Ccccc
Q 012562           95 IQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTE-LPHCLVTCESLEALKLACRQLRMCVLKLP---FSVGF  170 (461)
Q Consensus        95 i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~-lp~~l~~~~~L~~L~L~~~~~~~~~l~~~---~~~~l  170 (461)
                      |..|++.-... ++.++..-. ...+.+++++||+....... +--.+..|+.|+.|.|.+.     .+.+|   ....-
T Consensus       161 V~v~Rlar~~~-~~prlae~~-~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-----~LdD~I~~~iAkN  233 (419)
T KOG2120|consen  161 VIVFRLARSFM-DQPRLAEHF-SPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-----RLDDPIVNTIAKN  233 (419)
T ss_pred             eEEEEcchhhh-cCchhhhhh-hhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-----ccCcHHHHHHhcc
Confidence            44444432211 112222211 22345799999966532222 2222335999999999999     88774   45567


Q ss_pred             CcccEEEeeeEE-EcChhhHHHHhhcCccccceEEeeeec
Q 012562          171 SRLKSLDLHNVE-FLDHNLLHKFVSSRRLLEKLILKSCSF  209 (461)
Q Consensus       171 ~~L~~L~L~~~~-~~~~~~l~~l~~~cp~Le~L~L~~c~~  209 (461)
                      .+|+.|+|+.+. ++.. +++-++++|..|..|.|+.|..
T Consensus       234 ~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTEN-ALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             ccceeeccccccccchh-HHHHHHHhhhhHhhcCchHhhc
Confidence            899999999764 6666 8999999999999999999963

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.50  E-value=7.2e-16  Score=142.58  Aligned_cols=345  Identities=18%  Similarity=0.182  Sum_probs=179.5

Q ss_pred             CCCCCC-CCChHHHHHHhcCCChhHHHHHHHHhHhHHHh------hccCCeeEeecCCcCCCccchhcHhHHHHHHHHHH
Q 012562           14 DGDRLC-SLPEPVIHQIFSFMETIDVVRASAVSRKWRYL------WLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVL   86 (461)
Q Consensus        14 ~~D~is-~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l   86 (461)
                      ..+.++ .||+|++..|||+|.++...+++.+|+-|..+      |.++.-.+|-.+.-             -..|..++
T Consensus        67 ~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~-------------g~VV~~~~  133 (483)
T KOG4341|consen   67 DNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD-------------GGVVENMI  133 (483)
T ss_pred             hcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC-------------CcceehHh
Confidence            344444 69999999999999999999999999999975      44433222211110             12234444


Q ss_pred             hcCCCCCcccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--
Q 012562           87 LSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--  164 (461)
Q Consensus        87 ~~~~~~~~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--  164 (461)
                      .+..|  .+++++++......+..+....                          ..|+++++|.+.+|.    .+.+  
T Consensus       134 ~Rcgg--~lk~LSlrG~r~v~~sslrt~~--------------------------~~CpnIehL~l~gc~----~iTd~s  181 (483)
T KOG4341|consen  134 SRCGG--FLKELSLRGCRAVGDSSLRTFA--------------------------SNCPNIEHLALYGCK----KITDSS  181 (483)
T ss_pred             hhhcc--ccccccccccccCCcchhhHHh--------------------------hhCCchhhhhhhcce----eccHHH
Confidence            44444  7888888877644332222111                          135555555555551    2222  


Q ss_pred             --CCccccCcccEEEeeeE-EEcChhhHHHHhhcCccccceEEeeee-cC--CceEEEEecCCcCeEEEeccCCCCCCCe
Q 012562          165 --PFSVGFSRLKSLDLHNV-EFLDHNLLHKFVSSRRLLEKLILKSCS-FR--DFKILDISSTSLKSLTLDNFGGDESGNY  238 (461)
Q Consensus       165 --~~~~~l~~L~~L~L~~~-~~~~~~~l~~l~~~cp~Le~L~L~~c~-~~--~~~~~~i~~~~L~~L~l~~~~~~~~~~~  238 (461)
                        .-...+++|+.|.|..+ .+++. .+..+..+||+|++|.++.|. +.  +++...-.+..++.+...+|.-.+.+.+
T Consensus       182 ~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l  260 (483)
T KOG4341|consen  182 LLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL  260 (483)
T ss_pred             HHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH
Confidence              11224555555555552 33333 555555556666666665554 11  1111112223344443333321000000


Q ss_pred             E-EEEecCCeeeEEEecCCC-Cceee----eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhh
Q 012562          239 K-VKIACPNLVSFNFLASWA-PDFAF----EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLR  312 (461)
Q Consensus       239 ~-~~~~~p~L~~L~l~~~~~-~~~~~----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~  312 (461)
                      . +.-.++.+..+++..+.. .+..+    ..+..|+.+..+-.    .+.+   +..+..+..++++|+.|.+.++.. 
T Consensus       261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~----t~~~---d~~l~aLg~~~~~L~~l~l~~c~~-  332 (483)
T KOG4341|consen  261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC----TDIT---DEVLWALGQHCHNLQVLELSGCQQ-  332 (483)
T ss_pred             HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC----CCCc---hHHHHHHhcCCCceEEEeccccch-
Confidence            0 111222233333222100 00000    01222333333111    0111   456788888999999999998752 


Q ss_pred             hhccccccccCCcccCcccEEEEEEeCCCcc-hhhHhhhhccCCCcceEEEEeccCCCccccc-cCcCccccccceeEEE
Q 012562          313 FHFVLEERGFIPNSFNYLKSLVLSVSMADWV-VPSIISLLNCSPNLEALTIYFEGEDCDDWKI-SNKSIFCLTCHLKTVE  390 (461)
Q Consensus       313 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~Lk~v~  390 (461)
                       +.... +..+....+.|+.|++..++...+ .+..  +-.+||.|++|.++.+......... ... ..|...+|..++
T Consensus       333 -fsd~~-ft~l~rn~~~Le~l~~e~~~~~~d~tL~s--ls~~C~~lr~lslshce~itD~gi~~l~~-~~c~~~~l~~lE  407 (483)
T KOG4341|consen  333 -FSDRG-FTMLGRNCPHLERLDLEECGLITDGTLAS--LSRNCPRLRVLSLSHCELITDEGIRHLSS-SSCSLEGLEVLE  407 (483)
T ss_pred             -hhhhh-hhhhhcCChhhhhhcccccceehhhhHhh--hccCCchhccCChhhhhhhhhhhhhhhhh-ccccccccceee
Confidence             11111 233333567999999988876333 3444  7899999999999977632111111 111 346677888888


Q ss_pred             EEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562          391 LIHVAGDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       391 i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      +.+-.+..  -+..+ .+.+++.||++.+.
T Consensus       408 L~n~p~i~--d~~Le-~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  408 LDNCPLIT--DATLE-HLSICRNLERIELI  434 (483)
T ss_pred             ecCCCCch--HHHHH-HHhhCcccceeeee
Confidence            88765432  23333 35789999997777

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.39  E-value=1.6e-12  Score=94.58  Aligned_cols=71  Identities=37%  Similarity=0.611  Sum_probs=62.9

Q ss_pred             cccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEEccCChh-hHHHHHHHHhcCCCCCCcceEEEe
Q 012562          380 FCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVE-NRKEIISRIMKLPRSSSNVALEFL  450 (461)
Q Consensus       380 ~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~~~~~~~-~~~~~~~~l~~~~r~s~~~~~~~~  450 (461)
                      .|+.++||+|+|.+|.|...|++|++|+++||+.||+|+|..+.... +..++.++|..++|||++|++.|.
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~   72 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL   72 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence            47889999999999999999999999999999999999999875543 335688999999999999999873

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.25  E-value=4.2e-12  Score=139.82  Aligned_cols=219  Identities=21%  Similarity=0.115  Sum_probs=125.3

Q ss_pred             cCCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      +.++.|+|+.+.....+|..++ .+++|++|+|++|     .+.. .....+++|++|+|.++.+++  .+...+.++++
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-----~l~~~~p~~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~  165 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-----NFTGSIPRGSIPNLETLDLSNNMLSG--EIPNDIGSFSS  165 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-----ccccccCccccCCCCEEECcCCcccc--cCChHHhcCCC
Confidence            5788888866654557887777 6888899988888     5543 223467888888888887764  34445677888


Q ss_pred             ccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCC---ceeeeCCCCceEEEE
Q 012562          199 LEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAP---DFAFEDLDSLQNAFI  273 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~l~l  273 (461)
                      |+.|+|++|.+.+..+-.+. .++|++|.+.+|.+  .+.+.-. -.+++|+.|.+.++...   +..+..+++|+.+++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL--VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCC--cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            88888888764432222222 36788888877764  2222111 25667777777764332   223456677777777


Q ss_pred             EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562          274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC  353 (461)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~  353 (461)
                      ..+..         ...+...+..+++|+.|.+..|.+...    .+..+. .+++|++|+++.+........   .+..
T Consensus       244 ~~n~l---------~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~Ls~n~l~~~~p~---~~~~  306 (968)
T PLN00113        244 VYNNL---------TGPIPSSLGNLKNLQYLFLYQNKLSGP----IPPSIF-SLQKLISLDLSDNSLSGEIPE---LVIQ  306 (968)
T ss_pred             cCcee---------ccccChhHhCCCCCCEEECcCCeeecc----CchhHh-hccCcCEEECcCCeeccCCCh---hHcC
Confidence            43322         111233455666677777766643311    111122 344556665554432222211   3344


Q ss_pred             CCCcceEEEEec
Q 012562          354 SPNLEALTIYFE  365 (461)
Q Consensus       354 ~p~L~~L~l~~~  365 (461)
                      +++|+.|++..+
T Consensus       307 l~~L~~L~l~~n  318 (968)
T PLN00113        307 LQNLEILHLFSN  318 (968)
T ss_pred             CCCCcEEECCCC
Confidence            555555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.18  E-value=1.9e-11  Score=134.61  Aligned_cols=142  Identities=22%  Similarity=0.215  Sum_probs=69.8

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .++++|+++.+.....+|.  ..+++|++|+|++|     .+..  | .+..+++|++|+|.++.+.+  .+...+.+++
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-----~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~  188 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-----MLSGEIPNDIGSFSSLKVLDLGGNVLVG--KIPNSLTNLT  188 (968)
T ss_pred             CCCCEEECcCCccccccCc--cccCCCCEEECcCC-----cccccCChHHhcCCCCCEEECccCcccc--cCChhhhhCc
Confidence            4677777755433333443  23556677777666     4332  2 34556666666666665543  2333345566


Q ss_pred             cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCC---ceeeeCCCCceEEE
Q 012562          198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAP---DFAFEDLDSLQNAF  272 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~l~  272 (461)
                      .|+.|+|.+|...+..+-.+. .++|+.|.+..|.+  .+.+.-. -.+++|++|++.++...   +..+.++++|+.++
T Consensus       189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  266 (968)
T PLN00113        189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL--SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF  266 (968)
T ss_pred             CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc--CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence            666666666643322111111 24566666655543  1111111 24455555555553221   12234455555555


Q ss_pred             E
Q 012562          273 I  273 (461)
Q Consensus       273 l  273 (461)
                      +
T Consensus       267 L  267 (968)
T PLN00113        267 L  267 (968)
T ss_pred             C
Confidence            5

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=99.17  E-value=4.6e-11  Score=79.64  Aligned_cols=50  Identities=44%  Similarity=0.699  Sum_probs=45.3

Q ss_pred             cccc-cCcCccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEEc
Q 012562          371 DWKI-SNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSW  421 (461)
Q Consensus       371 ~~~~-~~~~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~~  421 (461)
                      +|++ ... |+|+.+|||.|++.+|.|...|++|++|+++||+.||+|+|.+
T Consensus         1 ~W~~~~~~-p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~   51 (51)
T PF08387_consen    1 FWIEPSSV-PECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF   51 (51)
T ss_pred             CCCCCCCC-ccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence            4744 445 9999999999999999999999999999999999999999973

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.96  E-value=1.3e-10  Score=112.35  Aligned_cols=128  Identities=16%  Similarity=0.104  Sum_probs=59.9

Q ss_pred             cccCCCccEEEeceeccccccccC-CCcccc-CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562          141 LVTCESLEALKLACRQLRMCVLKL-PFSVGF-SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS  218 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l-~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~  218 (461)
                      +.++++|+.++|..+     .+.. |.+... .+|+.|+|.++.++.-  -..-++..|.||.|+|+.|.+..+.....+
T Consensus        98 f~nl~nLq~v~l~~N-----~Lt~IP~f~~~sghl~~L~L~~N~I~sv--~se~L~~l~alrslDLSrN~is~i~~~sfp  170 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKN-----ELTRIPRFGHESGHLEKLDLRHNLISSV--TSEELSALPALRSLDLSRNLISEIPKPSFP  170 (873)
T ss_pred             HhcCCcceeeeeccc-----hhhhcccccccccceeEEeeeccccccc--cHHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence            344566666666666     5544 444433 3466666666655542  122244556666666666544433333333


Q ss_pred             c-CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCC---CceeeeCCCCceEEEEEEE
Q 012562          219 S-TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWA---PDFAFEDLDSLQNAFIFFD  276 (461)
Q Consensus       219 ~-~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~---~~~~~~~~~~L~~l~l~~~  276 (461)
                      . .++++|.+..+.+.+.+.-. .-...+|..|.++.+.+   +...|+++|.|+.+++..+
T Consensus       171 ~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  171 AKVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             CCCCceEEeecccccccccccc-ccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence            2 45666666655532111110 01222455555544322   2223444555555555433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.94  E-value=1.4e-10  Score=112.22  Aligned_cols=219  Identities=16%  Similarity=0.111  Sum_probs=125.3

Q ss_pred             CCeEEEEEEcceeeeCCCCccc-CCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVT-CESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      -++.|||+-+. ...+|..-+. -.++++|+|+++     .+..   ..+.+|.+|.+|.|+.+.++.  --...+...|
T Consensus       150 alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N-----~It~l~~~~F~~lnsL~tlkLsrNritt--Lp~r~Fk~L~  221 (873)
T KOG4194|consen  150 ALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASN-----RITTLETGHFDSLNSLLTLKLSRNRITT--LPQRSFKRLP  221 (873)
T ss_pred             hhhhhhhhhch-hhcccCCCCCCCCCceEEeeccc-----cccccccccccccchheeeecccCcccc--cCHHHhhhcc
Confidence            47778885543 2334433333 468999999999     4444   567788899999999998876  3456677799


Q ss_pred             cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCC--------CeE---------------EEEecCCeeeEEEe
Q 012562          198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESG--------NYK---------------VKIACPNLVSFNFL  253 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~--------~~~---------------~~~~~p~L~~L~l~  253 (461)
                      .||.|+|..|.+.-.+.+... -++|+.|.+.++++....        .++               .......|+.|+++
T Consensus       222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence            999999998764333222222 267777777777631100        000               11223445555555


Q ss_pred             cCCCCceee---eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcc
Q 012562          254 ASWAPDFAF---EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYL  330 (461)
Q Consensus       254 ~~~~~~~~~---~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L  330 (461)
                      .+.+..+.+   .-++.|++++++.+....-         -..-+..+..|+.|.|+.|.++.+.++. +.    .+.+|
T Consensus       302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l---------~~~sf~~L~~Le~LnLs~Nsi~~l~e~a-f~----~lssL  367 (873)
T KOG4194|consen  302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRL---------DEGSFRVLSQLEELNLSHNSIDHLAEGA-FV----GLSSL  367 (873)
T ss_pred             hhhhheeecchhhhcccceeEeccccccccC---------ChhHHHHHHHhhhhcccccchHHHHhhH-HH----Hhhhh
Confidence            544433332   2356777777755543111         0112334455667777777666555443 11    34466


Q ss_pred             cEEEEEEeCC----CcchhhHhhhhccCCCcceEEEEecc
Q 012562          331 KSLVLSVSMA----DWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       331 ~~L~l~~~~~----~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      +.|+++.+..    ++.  ..  .+...|.|++|.+.++.
T Consensus       368 ~~LdLr~N~ls~~IEDa--a~--~f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  368 HKLDLRSNELSWCIEDA--AV--AFNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             hhhcCcCCeEEEEEecc--hh--hhccchhhhheeecCce
Confidence            7777655432    111  11  34557777777776654

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.77  E-value=5.7e-09  Score=68.69  Aligned_cols=36  Identities=36%  Similarity=0.769  Sum_probs=31.6

Q ss_pred             CCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhc
Q 012562           18 LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWL   53 (461)
Q Consensus        18 is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~   53 (461)
                      |+.||+||+.+||++||.+|.++++.|||+|+.+..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            678999999999999999999999999999998753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.60  E-value=2.7e-09  Score=102.17  Aligned_cols=15  Identities=27%  Similarity=0.211  Sum_probs=7.8

Q ss_pred             hccCCCcceEEEEec
Q 012562          351 LNCSPNLEALTIYFE  365 (461)
Q Consensus       351 L~~~p~L~~L~l~~~  365 (461)
                      +..+|+|+.|++..+
T Consensus       217 ~~~~~~L~~L~ls~n  231 (319)
T cd00116         217 LASLKSLEVLNLGDN  231 (319)
T ss_pred             hcccCCCCEEecCCC
Confidence            344555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.55  E-value=8.6e-09  Score=98.71  Aligned_cols=61  Identities=26%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             cCCCccEEEeceeccccccccC---CCcccc---CcccEEEeeeEEEcChhhHHH---HhhcC-ccccceEEeeeec
Q 012562          143 TCESLEALKLACRQLRMCVLKL---PFSVGF---SRLKSLDLHNVEFLDHNLLHK---FVSSR-RLLEKLILKSCSF  209 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~---~~~~~l---~~L~~L~L~~~~~~~~~~l~~---l~~~c-p~Le~L~L~~c~~  209 (461)
                      .+++|+.|+|++|     .+..   +.+..+   ++|++|++.++.+++. ....   .+..+ +.|++|++.+|.+
T Consensus        79 ~~~~L~~L~l~~~-----~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l  149 (319)
T cd00116          79 KGCGLQELDLSDN-----ALGPDGCGVLESLLRSSSLQELKLNNNGLGDR-GLRLLAKGLKDLPPALEKLVLGRNRL  149 (319)
T ss_pred             hcCceeEEEccCC-----CCChhHHHHHHHHhccCcccEEEeeCCccchH-HHHHHHHHHHhCCCCceEEEcCCCcC
Confidence            3556666666666     3321   111122   3366666666665543 2222   23334 6666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.54  E-value=9.7e-08  Score=106.32  Aligned_cols=122  Identities=19%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .++.|.+..+. ...+|..+ ...+|+.|+|.++     .+..  .....+++|+.|+|.++....  .++. ++.+++|
T Consensus       590 ~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s-----~l~~L~~~~~~l~~Lk~L~Ls~~~~l~--~ip~-ls~l~~L  659 (1153)
T PLN03210        590 KLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGS-----KLEKLWDGVHSLTGLRNIDLRGSKNLK--EIPD-LSMATNL  659 (1153)
T ss_pred             ccEEEEecCCC-CCCCCCcC-CccCCcEEECcCc-----cccccccccccCCCCCEEECCCCCCcC--cCCc-cccCCcc
Confidence            46666653321 34455543 4567888888777     5444  234567777777777654222  2222 4567777


Q ss_pred             cceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562          200 EKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS  255 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~  255 (461)
                      +.|+|.+|.....-+..+. .++|+.|.+.+|..  .+.+...++.++|++|.++|+
T Consensus       660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~--L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN--LEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             cEEEecCCCCccccchhhhccCCCCEEeCCCCCC--cCccCCcCCCCCCCEEeCCCC
Confidence            7777777642111111111 25677777766542  222222235566666666664

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=3e-08  Score=93.24  Aligned_cols=110  Identities=22%  Similarity=0.108  Sum_probs=83.0

Q ss_pred             cCCCccEEEeceeccccccccCC----CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562          143 TCESLEALKLACRQLRMCVLKLP----FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS  218 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~~----~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~  218 (461)
                      .+++|+.|+|+.+     .+..|    ....++.|++|.|.+|.++.. ++..++..||.|+.|+|..|.  +...-..+
T Consensus       170 qLp~Le~LNls~N-----rl~~~~~s~~~~~l~~lK~L~l~~CGls~k-~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~  241 (505)
T KOG3207|consen  170 QLPSLENLNLSSN-----RLSNFISSNTTLLLSHLKQLVLNSCGLSWK-DVQWILLTFPSLEVLYLEANE--IILIKATS  241 (505)
T ss_pred             hcccchhcccccc-----cccCCccccchhhhhhhheEEeccCCCCHH-HHHHHHHhCCcHHHhhhhccc--ccceecch
Confidence            3678999999998     65543    233689999999999999976 999999999999999999974  21111111


Q ss_pred             ---cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce
Q 012562          219 ---STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF  260 (461)
Q Consensus       219 ---~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~  260 (461)
                         ..+|+.|+++++.+++.......-..|+|+.|.++.+....+
T Consensus       242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence               257999999999876666555555789999998887655443

>PLN03210 Resistant to P

Probab=98.44  E-value=2.1e-07  Score=103.60  Aligned_cols=142  Identities=17%  Similarity=0.112  Sum_probs=87.7

Q ss_pred             cCCeEEEEEEc------ceeeeCCCCcccC-CCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHH
Q 012562          121 RNVQVFDLTVY------GEVTELPHCLVTC-ESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKF  192 (461)
Q Consensus       121 ~~l~~L~l~~~------~~~~~lp~~l~~~-~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l  192 (461)
                      ++++.|.+...      .....+|..+... .+|+.|.+.++     .+.. |....+.+|++|+|.++.+..   +..-
T Consensus       558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-----~l~~lP~~f~~~~L~~L~L~~s~l~~---L~~~  629 (1153)
T PLN03210        558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-----PLRCMPSNFRPENLVKLQMQGSKLEK---LWDG  629 (1153)
T ss_pred             ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-----CCCCCCCcCCccCCcEEECcCccccc---cccc
Confidence            46777777432      1234566665554 46999998887     5544 544567899999998876643   2333


Q ss_pred             hhcCccccceEEeeeec-CCceEEEEecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCC-ceee-eCCCCc
Q 012562          193 VSSRRLLEKLILKSCSF-RDFKILDISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAP-DFAF-EDLDSL  268 (461)
Q Consensus       193 ~~~cp~Le~L~L~~c~~-~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~-~~~~-~~~~~L  268 (461)
                      +..+++|+.|+|++|.. ..+.. --..++|+.|.+.+|..  ...+...+ .+++|+.|.++++... .... .++++|
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~--L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL  706 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSS--LVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL  706 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCC--ccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence            56789999999988642 11111 11247899999987763  22333223 6788999998874321 1111 145667


Q ss_pred             eEEEE
Q 012562          269 QNAFI  273 (461)
Q Consensus       269 ~~l~l  273 (461)
                      +.+.+
T Consensus       707 ~~L~L  711 (1153)
T PLN03210        707 YRLNL  711 (1153)
T ss_pred             CEEeC
Confidence            77766

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.3e-08  Score=95.62  Aligned_cols=208  Identities=19%  Similarity=0.125  Sum_probs=134.5

Q ss_pred             cCCCccEEEeceeccccccccCC----CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceE--EE
Q 012562          143 TCESLEALKLACRQLRMCVLKLP----FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKI--LD  216 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~~----~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~--~~  216 (461)
                      +.+.|+...|.++     .+..+    ....|++++.|+|+.+-+..-..+-+++...|+||.|.|+.|.......  ..
T Consensus       119 n~kkL~~IsLdn~-----~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~  193 (505)
T KOG3207|consen  119 NLKKLREISLDNY-----RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT  193 (505)
T ss_pred             hHHhhhheeecCc-----cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence            3567888888888     55442    3456999999999999887765777888899999999999986332211  11


Q ss_pred             EecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEEEEEeecCCCCchhhHHHHHH
Q 012562          217 ISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIFFDIIDRDERDNESCHILSK  293 (461)
Q Consensus       217 i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~  293 (461)
                      -..++|+.|.+..|++...+...+....|+|+.|.+.++.....   ....+..|++++|.-+..      .  ......
T Consensus       194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l------i--~~~~~~  265 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL------I--DFDQGY  265 (505)
T ss_pred             hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc------c--cccccc
Confidence            23478999999999862111122445789999999988642211   123356688888843211      0  111223


Q ss_pred             HHhcCCCccEEEEecchhhhhccccc-cccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEecc
Q 012562          294 LLNELCEVKALKLSTAFLRFHFVLEE-RGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       294 ~l~~l~~l~~L~l~~~~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      ....+++|+.|+++.+.+..+..... .......|++|+.|.+..+.. ++..+..   ++..++|+.|.+....
T Consensus       266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~---l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH---LRTLENLKHLRITLNY  337 (505)
T ss_pred             ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch---hhccchhhhhhccccc
Confidence            44578888888888887765544321 111122688999999977654 5665553   4566777777765543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.35  E-value=1.8e-07  Score=85.65  Aligned_cols=183  Identities=20%  Similarity=0.205  Sum_probs=104.1

Q ss_pred             cccCcccEEEeeeEEEcCh--hhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecC
Q 012562          168 VGFSRLKSLDLHNVEFLDH--NLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACP  245 (461)
Q Consensus       168 ~~l~~L~~L~L~~~~~~~~--~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p  245 (461)
                      ..+|.|++|+|++|.+...  ..+..++++|..|++|.|.+|-... ..-..-...|..|. . +        +-.-+.|
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~-~-~--------kk~~~~~  157 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELA-V-N--------KKAASKP  157 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHH-H-H--------hccCCCc
Confidence            3566777777777777655  4677889999999999999985211 10000001111111 0 0        0011344


Q ss_pred             CeeeEEEecCCCCce-------eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhcccc
Q 012562          246 NLVSFNFLASWAPDF-------AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLE  318 (461)
Q Consensus       246 ~L~~L~l~~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~  318 (461)
                      .|+++....+...+.       .+...+.|+++.+..+...+..     ...+..-+..+++|+.|+|+.|++..-....
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG-----~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG-----VTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCch-----hHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            455554443222111       1334556666666443221111     2234555677899999999999876433222


Q ss_pred             ccccCCcccCcccEEEEEEeCC-CcchhhHhh-hhccCCCcceEEEEeccC
Q 012562          319 ERGFIPNSFNYLKSLVLSVSMA-DWVVPSIIS-LLNCSPNLEALTIYFEGE  367 (461)
Q Consensus       319 ~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~-lL~~~p~L~~L~l~~~~~  367 (461)
                      .-..+| .+++|+.|.++.|.. +......+. +-+..|+|+.|.+.++..
T Consensus       233 LakaL~-s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  233 LAKALS-SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             HHHHhc-ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            234566 778899999988865 333333333 446789999998888763

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.34  E-value=1.5e-07  Score=62.20  Aligned_cols=37  Identities=38%  Similarity=0.760  Sum_probs=31.4

Q ss_pred             CCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc
Q 012562           18 LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS   54 (461)
Q Consensus        18 is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~   54 (461)
                      +++||+|++.+||++|+.+|.++.+.|||+|+.+...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.28  E-value=1.1e-06  Score=55.86  Aligned_cols=34  Identities=38%  Similarity=0.673  Sum_probs=31.7

Q ss_pred             CChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc
Q 012562           21 LPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS   54 (461)
Q Consensus        21 LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~   54 (461)
                      ||+|++.+||++|+.+|.++.+.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=7.5e-07  Score=79.98  Aligned_cols=245  Identities=18%  Similarity=0.185  Sum_probs=149.6

Q ss_pred             cccCCCccEEEeceeccccccccCC-----CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC-CceE
Q 012562          141 LVTCESLEALKLACRQLRMCVLKLP-----FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR-DFKI  214 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~~-----~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~-~~~~  214 (461)
                      ++...-+..|.+.+|     .++..     -...+..++.|+|.+|.+++-..+..++.+.|.|+.|.|+.|... .+..
T Consensus        41 v~s~ra~ellvln~~-----~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~  115 (418)
T KOG2982|consen   41 VSSLRALELLVLNGS-----IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS  115 (418)
T ss_pred             eccccchhhheecCC-----CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc
Confidence            333445556777777     66551     123578899999999999987788899999999999999998732 2333


Q ss_pred             EEEecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCceee-----eC-CCCceEEEEEEEeecCCCCchhh
Q 012562          215 LDISSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFAF-----ED-LDSLQNAFIFFDIIDRDERDNES  287 (461)
Q Consensus       215 ~~i~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~~-----~~-~~~L~~l~l~~~~~~~~~~~~~~  287 (461)
                      ...+..+|+.|.+.++... ..... ..-+.|.++.|.++.+....+.+     +. .+.+..+..       ..++.+.
T Consensus       116 lp~p~~nl~~lVLNgT~L~-w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~-------~~c~~~~  187 (418)
T KOG2982|consen  116 LPLPLKNLRVLVLNGTGLS-WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ-------LPCLEQL  187 (418)
T ss_pred             CcccccceEEEEEcCCCCC-hhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc-------CCcHHHH
Confidence            3345567888888876631 11111 22367777777776642221111     10 112222222       0122222


Q ss_pred             HHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEecc
Q 012562          288 CHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       288 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      .....++.+.+||+..+.++.+.++....+.-..    .|+.+.-|.++.+.. +|+.+.   -|..+|.|..|.+..++
T Consensus       188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se----~~p~~~~LnL~~~~idswasvD---~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE----PFPSLSCLNLGANNIDSWASVD---ALNGFPQLVDLRVSENP  260 (418)
T ss_pred             HHHHHhHHhhcccchheeeecCcccchhhcccCC----CCCcchhhhhcccccccHHHHH---HHcCCchhheeeccCCc
Confidence            4456667778999999999999888666554334    444666778866544 677666   57899999999887765


Q ss_pred             CCC--ccccccCcCccccccceeEEEEEe---ec---CChhHHHHHHHHHh
Q 012562          367 EDC--DDWKISNKSIFCLTCHLKTVELIH---VA---GDENELELVRFLLK  409 (461)
Q Consensus       367 ~~~--~~~~~~~~~~~~~~~~Lk~v~i~~---~~---g~~~e~~~~~~ll~  409 (461)
                      -..  ...++...    +...|..|++.+   +.   ....|..|++|.+.
T Consensus       261 l~d~l~~~err~l----lIaRL~~v~vLNGskIss~er~dSEr~fVRyym~  307 (418)
T KOG2982|consen  261 LSDPLRGGERRFL----LIARLTKVQVLNGSKISSRERKDSERRFVRYYMS  307 (418)
T ss_pred             ccccccCCcceEE----EEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence            210  11111222    234455555552   21   23577899998876

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.19  E-value=5.1e-09  Score=102.36  Aligned_cols=206  Identities=15%  Similarity=0.063  Sum_probs=122.0

Q ss_pred             eeeeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562          133 EVTELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR  210 (461)
Q Consensus       133 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~  210 (461)
                      ....+|..+|.+..|+.|+|+.+     .+.. | ....-+++-.|+|+++.+.+  --..++.+..-|-.|+|+.+...
T Consensus        91 KnsGiP~diF~l~dLt~lDLShN-----qL~EvP~~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   91 KNSGIPTDIFRLKDLTILDLSHN-----QLREVPTNLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             ccCCCCchhcccccceeeecchh-----hhhhcchhhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhccccchhh
Confidence            35678888999999999999998     6655 4 44566788899999888765  23445666777778888887543


Q ss_pred             CceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCC----CceeeeCCCCceEEEEEEEeecCCCCchh
Q 012562          211 DFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWA----PDFAFEDLDSLQNAFIFFDIIDRDERDNE  286 (461)
Q Consensus       211 ~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  286 (461)
                      .+.+-.-.-..|++|.++++..- .-.+.-.-.+.+|..|.+++...    .+.++.++.+|.+++++.+..     |. 
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-----p~-  236 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-----PI-  236 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-----Cc-
Confidence            33221112246778888876520 00111111345566666766321    123456677888888865432     11 


Q ss_pred             hHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          287 SCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       287 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                          +..-+-.+++|+.|+|++|.+.-+..+..      ...+|++|+++-+....  ++.  -+-..|.|++|.+..+.
T Consensus       237 ----vPecly~l~~LrrLNLS~N~iteL~~~~~------~W~~lEtLNlSrNQLt~--LP~--avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  237 ----VPECLYKLRNLRRLNLSGNKITELNMTEG------EWENLETLNLSRNQLTV--LPD--AVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             ----chHHHhhhhhhheeccCcCceeeeeccHH------HHhhhhhhccccchhcc--chH--HHhhhHHHHHHHhccCc
Confidence                34444567788888888887654433321      34577777776554311  111  22334566666555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.18  E-value=3.3e-08  Score=96.81  Aligned_cols=177  Identities=19%  Similarity=0.181  Sum_probs=92.3

Q ss_pred             eeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCC-
Q 012562          135 TELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRD-  211 (461)
Q Consensus       135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~-  211 (461)
                      ..+|..+...+.++.|.|...     .+.. | ....+.+|++|++.++...   .+..-++..|.|+.+.+..+.... 
T Consensus        22 ~~FP~~v~qMt~~~WLkLnrt-----~L~~vPeEL~~lqkLEHLs~~HN~L~---~vhGELs~Lp~LRsv~~R~N~LKns   93 (1255)
T KOG0444|consen   22 DRFPHDVEQMTQMTWLKLNRT-----KLEQVPEELSRLQKLEHLSMAHNQLI---SVHGELSDLPRLRSVIVRDNNLKNS   93 (1255)
T ss_pred             CcCchhHHHhhheeEEEechh-----hhhhChHHHHHHhhhhhhhhhhhhhH---hhhhhhccchhhHHHhhhccccccC
Confidence            446666666666666666665     4444 3 4456667777777666554   233335566677776666654221 


Q ss_pred             -ceEEEEecCCcCeEEEeccCCCCCCCeEE-EEecCCeeeEEEecCCCCcee---eeCCCCceEEEEEEEeecCCCCchh
Q 012562          212 -FKILDISSTSLKSLTLDNFGGDESGNYKV-KIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIFFDIIDRDERDNE  286 (461)
Q Consensus       212 -~~~~~i~~~~L~~L~l~~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~  286 (461)
                       +..--..-..|+.|+++.+..   ...+- .-.+.++-.|.++.+.+..+.   +.++..|-.++++-+.         
T Consensus        94 GiP~diF~l~dLt~lDLShNqL---~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr---------  161 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQL---REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR---------  161 (1255)
T ss_pred             CCCchhcccccceeeecchhhh---hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch---------
Confidence             111111124455666665542   11111 124566666776664443322   3334444444443221         


Q ss_pred             hHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEE
Q 012562          287 SCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSV  337 (461)
Q Consensus       287 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  337 (461)
                       ...+..-.+.+.+|++|.|++|.+....    ...+| .+.+|+.|.++.
T Consensus       162 -Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQ----LrQLP-smtsL~vLhms~  206 (1255)
T KOG0444|consen  162 -LEMLPPQIRRLSMLQTLKLSNNPLNHFQ----LRQLP-SMTSLSVLHMSN  206 (1255)
T ss_pred             -hhhcCHHHHHHhhhhhhhcCCChhhHHH----HhcCc-cchhhhhhhccc
Confidence             1224444556677888888887765322    34455 556666666643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1e-07  Score=85.44  Aligned_cols=100  Identities=23%  Similarity=0.245  Sum_probs=53.9

Q ss_pred             CccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEE-----E
Q 012562          146 SLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKIL-----D  216 (461)
Q Consensus       146 ~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~-----~  216 (461)
                      .|++|+|++.     .+..    .-...|..|+.|+|.++...|.  +..-++.-.+|+.|+|+.|.  |+...     -
T Consensus       186 Rlq~lDLS~s-----~it~stl~~iLs~C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~  256 (419)
T KOG2120|consen  186 RLQHLDLSNS-----VITVSTLHGILSQCSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCS--GFTENALQLLL  256 (419)
T ss_pred             hhHHhhcchh-----heeHHHHHHHHHHHHhhhhccccccccCcH--HHHHHhccccceeecccccc--ccchhHHHHHH
Confidence            4777777766     4333    1234566777777777766653  33335555667777777764  22211     1


Q ss_pred             EecCCcCeEEEeccCCCCCCCeEEEE--ecCCeeeEEEecC
Q 012562          217 ISSTSLKSLTLDNFGGDESGNYKVKI--ACPNLVSFNFLAS  255 (461)
Q Consensus       217 i~~~~L~~L~l~~~~~~~~~~~~~~~--~~p~L~~L~l~~~  255 (461)
                      -++++|..|+++-|... .+...+.+  -.++|+.|.++|+
T Consensus       257 ~scs~L~~LNlsWc~l~-~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLF-TEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             HhhhhHhhcCchHhhcc-chhhhHHHhhhchhhhhhhhhhh
Confidence            23466777777766531 11111111  3466777777763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.01  E-value=1.3e-06  Score=80.21  Aligned_cols=202  Identities=17%  Similarity=0.093  Sum_probs=97.6

Q ss_pred             CCCccEEEeceeccccccccC-------CCccccCcccEEEeeeEEEcCh---------hhHHHHhhcCccccceEEeee
Q 012562          144 CESLEALKLACRQLRMCVLKL-------PFSVGFSRLKSLDLHNVEFLDH---------NLLHKFVSSRRLLEKLILKSC  207 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~-------~~~~~l~~L~~L~L~~~~~~~~---------~~l~~l~~~cp~Le~L~L~~c  207 (461)
                      ..+++.++|+++     ++..       +...+-++|+.-++++.- ++.         ..+...+.+||.|++|+|++|
T Consensus        29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            457888888888     5544       233445566666665432 221         234455668999999999998


Q ss_pred             ecCCc--eE---EEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCC
Q 012562          208 SFRDF--KI---LDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDE  282 (461)
Q Consensus       208 ~~~~~--~~---~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  282 (461)
                      .+..-  +.   +--++.+|++|.+.+|++...+.-.+   ...|..|...      --.++.+.|+.+..+-+..  ++
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l---~~al~~l~~~------kk~~~~~~Lrv~i~~rNrl--en  171 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL---GRALFELAVN------KKAASKPKLRVFICGRNRL--EN  171 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH---HHHHHHHHHH------hccCCCcceEEEEeecccc--cc
Confidence            64221  11   11135677777777776311110000   0111111110      0112345555555533322  11


Q ss_pred             CchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEE
Q 012562          283 RDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALT  361 (461)
Q Consensus       283 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~  361 (461)
                      .+   ...+...++..+.++.+.+..|.+..-........+. .+++|+.|+|..|.. ..........|..+|+|+.|.
T Consensus       172 ~g---a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  172 GG---ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             cc---HHHHHHHHHhccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            11   2235556666677777777766544211101111222 445666666655543 222222222555566666666


Q ss_pred             EEecc
Q 012562          362 IYFEG  366 (461)
Q Consensus       362 l~~~~  366 (461)
                      +..|.
T Consensus       248 l~dcl  252 (382)
T KOG1909|consen  248 LGDCL  252 (382)
T ss_pred             ccccc
Confidence            55554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.95  E-value=2.4e-07  Score=94.81  Aligned_cols=154  Identities=19%  Similarity=0.278  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhh
Q 012562          111 VYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNL  188 (461)
Q Consensus       111 ~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~  188 (461)
                      +..|+..++  +++.+....+. ...+|..++...+|++|....|     .+..  +....+++|++|+|..+.+.+-  
T Consensus       256 lp~wi~~~~--nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-----el~yip~~le~~~sL~tLdL~~N~L~~l--  325 (1081)
T KOG0618|consen  256 LPEWIGACA--NLEALNANHNR-LVALPLRISRITSLVSLSAAYN-----ELEYIPPFLEGLKSLRTLDLQSNNLPSL--  325 (1081)
T ss_pred             chHHHHhcc--cceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-----hhhhCCCcccccceeeeeeehhcccccc--
Confidence            335554432  45555543332 2455555555556666666666     4444  3445688999999999887653  


Q ss_pred             HHHHhhcCcc-ccceEEeeeecCCceEEE-EecCCcCeEEEeccCCCCCCC-eEEEEecCCeeeEEEecCCCC---ceee
Q 012562          189 LHKFVSSRRL-LEKLILKSCSFRDFKILD-ISSTSLKSLTLDNFGGDESGN-YKVKIACPNLVSFNFLASWAP---DFAF  262 (461)
Q Consensus       189 l~~l~~~cp~-Le~L~L~~c~~~~~~~~~-i~~~~L~~L~l~~~~~~~~~~-~~~~~~~p~L~~L~l~~~~~~---~~~~  262 (461)
                      -..++...+. |+.|..+.+......... -..+.|..|.+.++.+  .+. .++....++|+.|+++.+...   ...+
T Consensus       326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L--td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~  403 (1081)
T KOG0618|consen  326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL--TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL  403 (1081)
T ss_pred             chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc--cccchhhhccccceeeeeecccccccCCHHHH
Confidence            1122222222 444444443322111111 1124566666666654  222 223446667777777664322   2234


Q ss_pred             eCCCCceEEEEEEE
Q 012562          263 EDLDSLQNAFIFFD  276 (461)
Q Consensus       263 ~~~~~L~~l~l~~~  276 (461)
                      .+++.|++++++-+
T Consensus       404 ~kle~LeeL~LSGN  417 (1081)
T KOG0618|consen  404 RKLEELEELNLSGN  417 (1081)
T ss_pred             hchHHhHHHhcccc
Confidence            45566666666433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.95  E-value=6.2e-07  Score=76.65  Aligned_cols=124  Identities=24%  Similarity=0.245  Sum_probs=45.1

Q ss_pred             CCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          122 NVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      ++++|+|...... .+ ..+. .+.+|+.|+|++|     .+.. .+...+++|++|++++|.+++-  -..+..+||+|
T Consensus        20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N-----~I~~l~~l~~L~~L~~L~L~~N~I~~i--~~~l~~~lp~L   90 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNN-----QITKLEGLPGLPRLKTLDLSNNRISSI--SEGLDKNLPNL   90 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS-------S--TT----TT--EEE--SS---S---CHHHHHH-TT-
T ss_pred             ccccccccccccc-cc-cchhhhhcCCCEEECCCC-----CCccccCccChhhhhhcccCCCCCCcc--ccchHHhCCcC
Confidence            5677777554311 12 2333 3678999999999     6666 5677789999999999988753  12334578999


Q ss_pred             cceEEeeeecCCceEEEE--ecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEec
Q 012562          200 EKLILKSCSFRDFKILDI--SSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLA  254 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i--~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~  254 (461)
                      ++|.+.+|.+.++..+.-  ..++|+.|.+.+|...+.....  +...+|+|+.|+...
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            999999887655433211  2367777777766653333322  222567777775443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.91  E-value=2.5e-05  Score=81.84  Aligned_cols=114  Identities=17%  Similarity=0.159  Sum_probs=71.7

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .+-..|+++... ...+|..+.  ++|+.|.+.+|     .+.. |.  ..++|++|+|.+|.++.-   +.   ..+.|
T Consensus       201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N-----~Lt~LP~--lp~~Lk~LdLs~N~LtsL---P~---lp~sL  264 (788)
T PRK15387        201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-----NLTSLPA--LPPELRTLEVSGNQLTSL---PV---LPPGL  264 (788)
T ss_pred             CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCC-----cCCCCCC--CCCCCcEEEecCCccCcc---cC---ccccc
Confidence            456677775543 346777665  47899999988     5554 32  357899999988877642   22   24688


Q ss_pred             cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCC
Q 012562          200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAP  258 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~  258 (461)
                      ++|++.+|.+..+..   ..++|+.|.+..|.+   ..+.  ...|+|++|+++++...
T Consensus       265 ~~L~Ls~N~L~~Lp~---lp~~L~~L~Ls~N~L---t~LP--~~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        265 LELSIFSNPLTHLPA---LPSGLCKLWIFGNQL---TSLP--VLPPGLQELSVSDNQLA  315 (788)
T ss_pred             ceeeccCCchhhhhh---chhhcCEEECcCCcc---cccc--ccccccceeECCCCccc
Confidence            888888875443221   125677777777663   2221  13467888888775443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.91  E-value=6.7e-06  Score=70.33  Aligned_cols=65  Identities=17%  Similarity=0.017  Sum_probs=32.2

Q ss_pred             hcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC--CcchhhHhhhhccCCCcceEEEEecc
Q 012562          296 NELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA--DWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       296 ~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      ..+++|+.|.+++|.+..+..   ...+. .+++|+.|++..+..  ....-..  ++..+|+|+.|+-....
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~---l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~--vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNE---LEPLS-SLPKLRVLSLEGNPVCEKKNYRLF--VIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCC---CGGGG-G-TT--EEE-TT-GGGGSTTHHHH--HHHH-TT-SEETTEETT
T ss_pred             HhCCcCCEEECcCCcCCChHH---hHHHH-cCCCcceeeccCCcccchhhHHHH--HHHHcChhheeCCEEcc
Confidence            457888888888887764433   33344 566888888876653  3333333  77889999999655543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.82  E-value=2.3e-05  Score=82.11  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=27.0

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEE
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEF  183 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~  183 (461)
                      +++.|.+..+. ...+|.   ..++|++|+|++|     .+.. |.  ..++|++|+|.++.+
T Consensus       223 ~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N-----~LtsLP~--lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        223 HITTLVIPDNN-LTSLPA---LPPELRTLEVSGN-----QLTSLPV--LPPGLLELSIFSNPL  274 (788)
T ss_pred             CCCEEEccCCc-CCCCCC---CCCCCcEEEecCC-----ccCcccC--cccccceeeccCCch
Confidence            56667665432 334454   2457777777777     4433 21  134566666555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.79  E-value=1.3e-05  Score=84.34  Aligned_cols=245  Identities=14%  Similarity=0.111  Sum_probs=135.9

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .+...|++.... ...+|..+.  ++|+.|+|++|     .+.. |. ..+++|++|+|.+|.++.   +..-+  .+.|
T Consensus       178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N-----~LtsLP~-~l~~nL~~L~Ls~N~Lts---LP~~l--~~~L  243 (754)
T PRK15370        178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNN-----ELKSLPE-NLQGNIKTLYANSNQLTS---IPATL--PDTI  243 (754)
T ss_pred             cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCC-----CCCcCCh-hhccCCCEEECCCCcccc---CChhh--hccc
Confidence            356677774432 345666543  47999999999     5555 32 234689999999887763   22211  2579


Q ss_pred             cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeec
Q 012562          200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIID  279 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~  279 (461)
                      +.|+|++|.+..+.. .+ ..+|+.|.+++|.+   ..+.-.+ .++|++|.++++....+.-.-.++|+.+++..+.. 
T Consensus       244 ~~L~Ls~N~L~~LP~-~l-~s~L~~L~Ls~N~L---~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L-  316 (754)
T PRK15370        244 QEMELSINRITELPE-RL-PSALQSLDLFHNKI---SCLPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL-  316 (754)
T ss_pred             cEEECcCCccCcCCh-hH-hCCCCEEECcCCcc---Ccccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCcc-
Confidence            999999986543211 11 25799999987774   2222112 35899999988654433211123466666643321 


Q ss_pred             CCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcce
Q 012562          280 RDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEA  359 (461)
Q Consensus       280 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~  359 (461)
                       ...|.          ...++|+.|.+..|.+..+.     ..+|   ++|+.|+++.|....  ++. .+   .++|+.
T Consensus       317 -t~LP~----------~l~~sL~~L~Ls~N~Lt~LP-----~~l~---~sL~~L~Ls~N~L~~--LP~-~l---p~~L~~  371 (754)
T PRK15370        317 -TALPE----------TLPPGLKTLEAGENALTSLP-----ASLP---PELQVLDVSKNQITV--LPE-TL---PPTITT  371 (754)
T ss_pred             -ccCCc----------cccccceeccccCCccccCC-----hhhc---CcccEEECCCCCCCc--CCh-hh---cCCcCE
Confidence             00110          01257888888887655322     2222   488888887764321  111 02   367888


Q ss_pred             EEEEeccCCCccccccCcCccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562          360 LTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       360 L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      |+|..+.-.       .. |..+...|+.+.+.+-.-.. --+-+..+...++.+..+.+.
T Consensus       372 LdLs~N~Lt-------~L-P~~l~~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~  423 (754)
T PRK15370        372 LDVSRNALT-------NL-PENLPAALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVE  423 (754)
T ss_pred             EECCCCcCC-------CC-CHhHHHHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEee
Confidence            888876531       12 33333455655555311110 001233344566777777776

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.69  E-value=8e-07  Score=83.39  Aligned_cols=257  Identities=17%  Similarity=0.104  Sum_probs=144.3

Q ss_pred             CCccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec-CC--ceEEEE
Q 012562          145 ESLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF-RD--FKILDI  217 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~-~~--~~~~~i  217 (461)
                      ..|+.|.|.+|+    ...+    .....+|++++|.+.++...++..+.++...|+.|+.|.+..|.. ..  ++.+.-
T Consensus       138 g~lk~LSlrG~r----~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCR----AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccc----cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            378999999993    3333    134579999999999987666658999999999999999999862 21  222333


Q ss_pred             ecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCcee-e----eCCCCceEEEEEEEeecCCCCchhhHHHH
Q 012562          218 SSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFA-F----EDLDSLQNAFIFFDIIDRDERDNESCHIL  291 (461)
Q Consensus       218 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~-~----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  291 (461)
                      .+++|++|.++.|.-.....++ ..-.+.+++.+...|+...... +    ..++.+.++++.-+       ....+..+
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c-------~~lTD~~~  286 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC-------NQLTDEDL  286 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhh-------ccccchHH
Confidence            4799999999988632222333 2335566777776764322211 1    12333444443111       00012335


Q ss_pred             HHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEeccCCCc
Q 012562          292 SKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFEGEDCD  370 (461)
Q Consensus       292 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~  370 (461)
                      ..+-.++..++.|..+++...  .... ...+....++|+.|.+..+.. +......  +-++||.|+.|.+..+.-...
T Consensus       287 ~~i~~~c~~lq~l~~s~~t~~--~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~--l~rn~~~Le~l~~e~~~~~~d  361 (483)
T KOG4341|consen  287 WLIACGCHALQVLCYSSCTDI--TDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTM--LGRNCPHLERLDLEECGLITD  361 (483)
T ss_pred             HHHhhhhhHhhhhcccCCCCC--chHH-HHHHhcCCCceEEEeccccchhhhhhhhh--hhcCChhhhhhcccccceehh
Confidence            555566667777777665421  1111 111111456888888877754 4444444  667888888887776542100


Q ss_pred             cccccCcCccccccceeEEEEEeec-CChhHHHHHHHHHhcCcCcceEEEE
Q 012562          371 DWKISNKSIFCLTCHLKTVELIHVA-GDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       371 ~~~~~~~~~~~~~~~Lk~v~i~~~~-g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      . .-.+..+.|  +.|+++.+.... -....+..+.-.-..+..|+.+++.
T Consensus       362 ~-tL~sls~~C--~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~  409 (483)
T KOG4341|consen  362 G-TLASLSRNC--PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD  409 (483)
T ss_pred             h-hHhhhccCC--chhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence            0 001111344  566666666322 1122223333333455566666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.68  E-value=1.4e-05  Score=83.98  Aligned_cols=95  Identities=15%  Similarity=0.169  Sum_probs=44.5

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .+++.|++..+. ...+|..++  ++|+.|+|++|     .+.. |. .-.++|+.|+|++|.+..   ++.-+  ...|
T Consensus       199 ~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N-----~LtsLP~-~l~~~L~~L~Ls~N~L~~---LP~~l--~s~L  264 (754)
T PRK15370        199 EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSN-----QLTSIPA-TLPDTIQEMELSINRITE---LPERL--PSAL  264 (754)
T ss_pred             cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCC-----ccccCCh-hhhccccEEECcCCccCc---CChhH--hCCC
Confidence            356667765443 234555443  46777777776     4433 21 112356666666655442   11111  1345


Q ss_pred             cceEEeeeecCCceEEEEecCCcCeEEEeccC
Q 012562          200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFG  231 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~  231 (461)
                      +.|++++|.+..+.. .+ .++|+.|.+++|.
T Consensus       265 ~~L~Ls~N~L~~LP~-~l-~~sL~~L~Ls~N~  294 (754)
T PRK15370        265 QSLDLFHNKISCLPE-NL-PEELRYLSVYDNS  294 (754)
T ss_pred             CEEECcCCccCcccc-cc-CCCCcEEECCCCc
Confidence            666665544322110 01 1345555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.38  E-value=5.4e-05  Score=78.91  Aligned_cols=61  Identities=16%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             CCccEEEeceeccccccccC--C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562          145 ESLEALKLACRQLRMCVLKL--P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR  210 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~--~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~  210 (461)
                      .+|++|+++|..    .+..  +  ....||+|++|.+.+..+..+ ++..+..++|+|..|+++++.+.
T Consensus       122 ~nL~~LdI~G~~----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  122 QNLQHLDISGSE----LFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HhhhhcCccccc----hhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCcc
Confidence            578888888862    2222  2  234699999999999999888 79999999999999999997544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.36  E-value=2.9e-06  Score=70.17  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=52.4

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      ++..|.++.+. ...+|+.+..+.+|+.|++.++     .+..  +...+++.|+.|++.-+...   .+.+-+.++|.|
T Consensus        34 ~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-----qie~lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~l  104 (264)
T KOG0617|consen   34 NITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-----QIEELPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPAL  104 (264)
T ss_pred             hhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-----hhhhcChhhhhchhhhheecchhhhh---cCccccCCCchh
Confidence            34445554332 4567777777888888888888     6555  35667888888888765543   234446677888


Q ss_pred             cceEEeeee
Q 012562          200 EKLILKSCS  208 (461)
Q Consensus       200 e~L~L~~c~  208 (461)
                      |.|+|.++.
T Consensus       105 evldltynn  113 (264)
T KOG0617|consen  105 EVLDLTYNN  113 (264)
T ss_pred             hhhhccccc
Confidence            888888764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.30  E-value=6.8e-05  Score=78.15  Aligned_cols=119  Identities=17%  Similarity=0.144  Sum_probs=78.5

Q ss_pred             HHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC-CCcchhhHhhhhccCCCcceEEEEeccCC
Q 012562          290 ILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM-ADWVVPSIISLLNCSPNLEALTIYFEGED  368 (461)
Q Consensus       290 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~l~~~~lL~~~p~L~~L~l~~~~~~  368 (461)
                      .+..+..++|||.+|++++..+..++      .+. .+.||+.|.+..-. ...+-+.   -|-+..+|+.|+|+.....
T Consensus       164 dF~~lc~sFpNL~sLDIS~TnI~nl~------GIS-~LknLq~L~mrnLe~e~~~~l~---~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  164 DFSQLCASFPNLRSLDISGTNISNLS------GIS-RLKNLQVLSMRNLEFESYQDLI---DLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             hHHHHhhccCccceeecCCCCccCcH------HHh-ccccHHHHhccCCCCCchhhHH---HHhcccCCCeeeccccccc
Confidence            47888899999999999998876442      233 56688888774433 2333333   3456889999999887532


Q ss_pred             CccccccCcCccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562          369 CDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       369 ~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      ....--..+ .+|.. -|..+++.+..|..-..++++.+++.-++|+.+.+.
T Consensus       234 ~~~~ii~qY-lec~~-~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  234 DDTKIIEQY-LECGM-VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             cchHHHHHH-HHhcc-cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            111000122 45532 255666666678877789999999999988888744

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.26  E-value=9.2e-05  Score=66.94  Aligned_cols=175  Identities=15%  Similarity=0.102  Sum_probs=106.5

Q ss_pred             cccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC-----------------------CceEEEEec-CCcC
Q 012562          168 VGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR-----------------------DFKILDISS-TSLK  223 (461)
Q Consensus       168 ~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~-----------------------~~~~~~i~~-~~L~  223 (461)
                      ..|.+|+++.++++.-.   .+..+...=|.|+++.+.+....                       |.....++. ..|+
T Consensus       211 ~~f~~l~~~~~s~~~~~---~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt  287 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTE---NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT  287 (490)
T ss_pred             HHhhhhheeeeeccchh---heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence            34566666666655322   33444445566666666553211                       111112222 4577


Q ss_pred             eEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCcc
Q 012562          224 SLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVK  302 (461)
Q Consensus       224 ~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~  302 (461)
                      .|+++.|.+...+..  .--+|.++.|.++.+....+ .+..+++|++++++.+..          .....+=..+-|++
T Consensus       288 elDLS~N~I~~iDES--vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~L----------s~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  288 ELDLSGNLITQIDES--VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLL----------AECVGWHLKLGNIK  355 (490)
T ss_pred             hccccccchhhhhhh--hhhccceeEEeccccceeeehhhhhcccceEeecccchh----------HhhhhhHhhhcCEe
Confidence            888887664222111  12378999999987544322 255678899999965432          22334445678999


Q ss_pred             EEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEeccC
Q 012562          303 ALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFEGE  367 (461)
Q Consensus       303 ~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~~~  367 (461)
                      +|.+.+|.++.++.      +. ++.+|..|+++.+.. ..+.+.   -+++.|.|+.|.+.+++-
T Consensus       356 tL~La~N~iE~LSG------L~-KLYSLvnLDl~~N~Ie~ldeV~---~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  356 TLKLAQNKIETLSG------LR-KLYSLVNLDLSSNQIEELDEVN---HIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             eeehhhhhHhhhhh------hH-hhhhheeccccccchhhHHHhc---ccccccHHHHHhhcCCCc
Confidence            99999998775443      33 777899999977754 444433   468899999999888763

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.17  E-value=0.00052  Score=38.26  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=24.0

Q ss_pred             cccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          172 RLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       172 ~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      +||+|+|..+.+.+++.++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            58999999999988778999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.16  E-value=5.1e-06  Score=68.79  Aligned_cols=155  Identities=19%  Similarity=0.083  Sum_probs=69.3

Q ss_pred             cccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562          141 LVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS  218 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~  218 (461)
                      ++..++.+.|.|+.+     .+..  |....+.+|+.|++.++.+.   .+..-+++.|.|+.|.+..+....+..-.-+
T Consensus        29 Lf~~s~ITrLtLSHN-----Kl~~vppnia~l~nlevln~~nnqie---~lp~~issl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHN-----KLTVVPPNIAELKNLEVLNLSNNQIE---ELPTSISSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             ccchhhhhhhhcccC-----ceeecCCcHHHhhhhhhhhcccchhh---hcChhhhhchhhhheecchhhhhcCccccCC
Confidence            444555566666665     3333  45555666666666555543   2333355556666666555432111111111


Q ss_pred             cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCC--ceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh
Q 012562          219 STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAP--DFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN  296 (461)
Q Consensus       219 ~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~  296 (461)
                      .|.|+.|++..+...+..-..-.+.+..|+-|.++++.+.  +..++.+.+|+-+.+.-+  |        .-.+.+-++
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--d--------ll~lpkeig  170 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--D--------LLSLPKEIG  170 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC--c--------hhhCcHHHH
Confidence            2455555555444311110111123334444444442221  112233333333333111  0        112444555


Q ss_pred             cCCCccEEEEecchhhh
Q 012562          297 ELCEVKALKLSTAFLRF  313 (461)
Q Consensus       297 ~l~~l~~L~l~~~~~~~  313 (461)
                      .+..++.|.+++|.+.+
T Consensus       171 ~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  171 DLTRLRELHIQGNRLTV  187 (264)
T ss_pred             HHHHHHHHhcccceeee
Confidence            66778888888876553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.16  E-value=0.00012  Score=50.97  Aligned_cols=56  Identities=25%  Similarity=0.186  Sum_probs=36.8

Q ss_pred             CCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee
Q 012562          145 ESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC  207 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c  207 (461)
                      ++|++|++++|     .+..   ..+..+++|++|++.++.+..-  -...+.++|.|+.|++++|
T Consensus         1 p~L~~L~l~~n-----~l~~i~~~~f~~l~~L~~L~l~~N~l~~i--~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-----KLTEIPPDSFSNLPNLETLDLSNNNLTSI--PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-----TESEECTTTTTTGTTESEEEETSSSESEE--ETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-----CCCccCHHHHcCCCCCCEeEccCCccCcc--CHHHHcCCCCCCEEeCcCC
Confidence            36777777777     4433   2455677777777777766532  2234677788888887775

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.99  E-value=0.00035  Score=62.43  Aligned_cols=114  Identities=16%  Similarity=0.079  Sum_probs=60.9

Q ss_pred             ecCCeeeEEEecCCCCcee-------eeCCCCceEEEEEEEeecCCCCchhhHHHHHHH--HhcCCCccEEEEecchhhh
Q 012562          243 ACPNLVSFNFLASWAPDFA-------FEDLDSLQNAFIFFDIIDRDERDNESCHILSKL--LNELCEVKALKLSTAFLRF  313 (461)
Q Consensus       243 ~~p~L~~L~l~~~~~~~~~-------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~--l~~l~~l~~L~l~~~~~~~  313 (461)
                      +.|.|+++....+.....+       +....+|..+.+.-+...|.+.      ....+  +..+.+|+.|+|+.|++..
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv------~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV------TMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh------HHHHHHHHHHhCcceeeeccccchhh
Confidence            5677777766554333221       2334567777775443322221      11111  2356788888888887654


Q ss_pred             hccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhc-----cCCCcceEEEEec
Q 012562          314 HFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLN-----CSPNLEALTIYFE  365 (461)
Q Consensus       314 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~-----~~p~L~~L~l~~~  365 (461)
                      .........++ ..+.|+.|.+..|.....+...  +++     ..|+|..|-.+.+
T Consensus       229 ~gS~~La~al~-~W~~lrEL~lnDClls~~G~~~--v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         229 EGSRYLADALC-EWNLLRELRLNDCLLSNEGVKS--VLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             hhHHHHHHHhc-ccchhhhccccchhhccccHHH--HHHHhhhhcCCCccccccchh
Confidence            33222223345 6667888888777543332222  333     3567776655544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.93  E-value=1.7e-05  Score=81.78  Aligned_cols=20  Identities=30%  Similarity=0.375  Sum_probs=12.3

Q ss_pred             eCCCCcccCCCccEEEecee
Q 012562          136 ELPHCLVTCESLEALKLACR  155 (461)
Q Consensus       136 ~lp~~l~~~~~L~~L~L~~~  155 (461)
                      .+|+.....++|++|+|..+
T Consensus       301 yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  301 YIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             hCCCcccccceeeeeeehhc
Confidence            34555555666777777666

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.75  E-value=6.3e-05  Score=70.49  Aligned_cols=81  Identities=23%  Similarity=0.249  Sum_probs=44.1

Q ss_pred             cCCeeeEEEecCCCC---ceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhcccccc
Q 012562          244 CPNLVSFNFLASWAP---DFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEER  320 (461)
Q Consensus       244 ~p~L~~L~l~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~  320 (461)
                      .|+|+.|+++++...   .-.|+++..++++.+.-+..         -..-...+.++.+|+.|+|.+|.+.++..    
T Consensus       273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l---------~~v~~~~f~~ls~L~tL~L~~N~it~~~~----  339 (498)
T KOG4237|consen  273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL---------EFVSSGMFQGLSGLKTLSLYDNQITTVAP----  339 (498)
T ss_pred             cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH---------HHHHHHhhhccccceeeeecCCeeEEEec----
Confidence            466666666664332   22455566666666633221         11233456677777777777777665442    


Q ss_pred             ccCCcccCcccEEEEEEe
Q 012562          321 GFIPNSFNYLKSLVLSVS  338 (461)
Q Consensus       321 ~~l~~~~~~L~~L~l~~~  338 (461)
                      ..+. ....|.+|.+-.+
T Consensus       340 ~aF~-~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  340 GAFQ-TLFSLSTLNLLSN  356 (498)
T ss_pred             cccc-ccceeeeeehccC
Confidence            2233 4446666766443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.67  E-value=6.6e-06  Score=77.02  Aligned_cols=177  Identities=20%  Similarity=0.099  Sum_probs=80.5

Q ss_pred             eeCCCCcccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc
Q 012562          135 TELPHCLVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF  212 (461)
Q Consensus       135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~  212 (461)
                      .++|..+++..+|+.|+.+.+     .+..  +....+-.|..|+..++.+..   +..-+.+|..|..|.+.++.....
T Consensus       104 s~lp~~i~s~~~l~~l~~s~n-----~~~el~~~i~~~~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l  175 (565)
T KOG0472|consen  104 SELPEQIGSLISLVKLDCSSN-----ELKELPDSIGRLLDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKAL  175 (565)
T ss_pred             hhccHHHhhhhhhhhhhcccc-----ceeecCchHHHHhhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhC
Confidence            445555555555555555555     3322  334445555555555544432   222233445555555555543332


Q ss_pred             eEEEEecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCCc-eeeeCCCCceEEEEEEEeecCCCCchhhHHH
Q 012562          213 KILDISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAPD-FAFEDLDSLQNAFIFFDIIDRDERDNESCHI  290 (461)
Q Consensus       213 ~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  290 (461)
                      ..-.+..++|++|+...+.   .+.++-.+ .+.+|+.|.+..+.... ..|+++..|.++.++.+..          ..
T Consensus       176 ~~~~i~m~~L~~ld~~~N~---L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i----------~~  242 (565)
T KOG0472|consen  176 PENHIAMKRLKHLDCNSNL---LETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI----------EM  242 (565)
T ss_pred             CHHHHHHHHHHhcccchhh---hhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH----------Hh
Confidence            2222333455555544443   22222112 23344444444322211 1345566666666643321          11


Q ss_pred             HH-HHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEe
Q 012562          291 LS-KLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVS  338 (461)
Q Consensus       291 ~~-~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  338 (461)
                      +. ..++.++++..|++..|.++..+.+.     - .+.+|..|+++.+
T Consensus       243 lpae~~~~L~~l~vLDLRdNklke~Pde~-----c-lLrsL~rLDlSNN  285 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLKEVPDEI-----C-LLRSLERLDLSNN  285 (565)
T ss_pred             hHHHHhcccccceeeeccccccccCchHH-----H-HhhhhhhhcccCC
Confidence            22 23445666777777776655333221     1 3445666666544

>PLN03150 hypothetical protein; Provisional

Probab=96.65  E-value=0.00092  Score=69.78  Aligned_cols=100  Identities=24%  Similarity=0.196  Sum_probs=66.3

Q ss_pred             ccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCc
Q 012562          147 LEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSL  222 (461)
Q Consensus       147 L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L  222 (461)
                      ++.|+|+++     .+..   +.+..+++|+.|+|.++.+.+  .+...+..++.|+.|+|++|.+.+..+-.+. .++|
T Consensus       420 v~~L~L~~n-----~L~g~ip~~i~~L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L  492 (623)
T PLN03150        420 IDGLGLDNQ-----GLRGFIPNDISKLRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL  492 (623)
T ss_pred             EEEEECCCC-----CccccCCHHHhCCCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence            778888888     5544   245678889999998888765  4555577888999999988876554333332 3788


Q ss_pred             CeEEEeccCCCCCCCeEEEE--ecCCeeeEEEecC
Q 012562          223 KSLTLDNFGGDESGNYKVKI--ACPNLVSFNFLAS  255 (461)
Q Consensus       223 ~~L~l~~~~~~~~~~~~~~~--~~p~L~~L~l~~~  255 (461)
                      +.|.+.+|.+  .+.+...+  ...++..+.+.++
T Consensus       493 ~~L~Ls~N~l--~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        493 RILNLNGNSL--SGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CEEECcCCcc--cccCChHHhhccccCceEEecCC
Confidence            8888888775  22222111  1235566777663

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.61  E-value=9.5e-05  Score=74.99  Aligned_cols=40  Identities=23%  Similarity=0.245  Sum_probs=32.4

Q ss_pred             CCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc
Q 012562           15 GDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS   54 (461)
Q Consensus        15 ~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~   54 (461)
                      .+-....|++....+....+..+...+..++++|......
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (482)
T KOG1947|consen   42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS   81 (482)
T ss_pred             eeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence            3456678899999999999988888888899998876544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.00016  Score=64.84  Aligned_cols=101  Identities=20%  Similarity=0.132  Sum_probs=63.9

Q ss_pred             CeeeEEEecCCCCceee-eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCC
Q 012562          246 NLVSFNFLASWAPDFAF-EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIP  324 (461)
Q Consensus       246 ~L~~L~l~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~  324 (461)
                      +.+.|+++|+...++.+ ..+|.|+-+.++++..           .-..-+..|++|+.|.|..|.+..+.+..-+.   
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkI-----------ssL~pl~rCtrLkElYLRkN~I~sldEL~YLk---   85 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKI-----------SSLAPLQRCTRLKELYLRKNCIESLDELEYLK---   85 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeecccc-----------ccchhHHHHHHHHHHHHHhcccccHHHHHHHh---
Confidence            44556666655555543 4566677666665543           11233456888888888888877655433334   


Q ss_pred             cccCcccEEEEEEeCC----CcchhhHhhhhccCCCcceEEEE
Q 012562          325 NSFNYLKSLVLSVSMA----DWVVPSIISLLNCSPNLEALTIY  363 (461)
Q Consensus       325 ~~~~~L~~L~l~~~~~----~~~~l~~~~lL~~~p~L~~L~l~  363 (461)
                       .+++|+.|+|..|.+    ..+.-..  +|+..|+|++|+=.
T Consensus        86 -nlpsLr~LWL~ENPCc~~ag~nYR~~--VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   86 -NLPSLRTLWLDENPCCGEAGQNYRRK--VLRVLPNLKKLDNV  125 (388)
T ss_pred             -cCchhhhHhhccCCcccccchhHHHH--HHHHcccchhccCc
Confidence             455999999976654    2333334  88999999999543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.41  E-value=6.6e-05  Score=70.37  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=36.6

Q ss_pred             CCeEEEEEEcceeeeCCCCccc-CCCccEEEeceeccccccccC--C-CccccCcccEEEeee-EEEc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVT-CESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHN-VEFL  184 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~-~~~~  184 (461)
                      ...+|+|.-+. ...+|+..|. .++|+.|+|+.|     .+..  | .+.++++|.+|.+.+ +.++
T Consensus        68 ~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N-----~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   68 ETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKN-----NISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             cceEEEeccCC-cccCChhhccchhhhceeccccc-----chhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            44555554443 5567777765 888888888888     4443  2 455677777776666 5544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.40  E-value=0.0052  Score=52.79  Aligned_cols=15  Identities=27%  Similarity=0.443  Sum_probs=10.8

Q ss_pred             EEEecCCeeeEEEec
Q 012562          240 VKIACPNLVSFNFLA  254 (461)
Q Consensus       240 ~~~~~p~L~~L~l~~  254 (461)
                      +....|+|+.|++.+
T Consensus       135 vl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  135 VLYKLPSLRTLDFQK  149 (233)
T ss_pred             EEEecCcceEeehhh
Confidence            334778888888776

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.09  E-value=0.0046  Score=42.88  Aligned_cols=55  Identities=29%  Similarity=0.349  Sum_probs=42.6

Q ss_pred             CCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEE
Q 012562          122 NVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVE  182 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~  182 (461)
                      ++++|++..+. ...+|...+ .+++|++|++++|     .+..   ..+..+++|++|++.++.
T Consensus         2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N-----~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNN-----NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSST-ESEECTTTTTTGTTESEEEETSS-----SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCC-----ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57788886553 557777665 4999999999999     5544   367899999999998764

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.95  E-value=0.0025  Score=64.54  Aligned_cols=69  Identities=25%  Similarity=0.111  Sum_probs=31.6

Q ss_pred             HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEe
Q 012562          291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYF  364 (461)
Q Consensus       291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~  364 (461)
                      +..+...+++++.|.+..+..  +.... ...+...+++|++|++..+.. ....+..  ++.+||+|+.|.+..
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~--lt~~g-l~~i~~~~~~L~~L~l~~c~~~~d~~l~~--~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSN--LTDEG-LVSIAERCPSLRELDLSGCHGLTDSGLEA--LLKNCPNLRELKLLS  330 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCc--cchhH-HHHHHHhcCcccEEeeecCccchHHHHHH--HHHhCcchhhhhhhh
Confidence            444455566666666444331  00000 111111344566666665544 3333333  455566666655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.93  E-value=0.0014  Score=64.67  Aligned_cols=169  Identities=20%  Similarity=0.146  Sum_probs=98.8

Q ss_pred             cCCCccEEEeceeccccccccC-CC-cccc-CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEec
Q 012562          143 TCESLEALKLACRQLRMCVLKL-PF-SVGF-SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISS  219 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~-~~-~~~l-~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~  219 (461)
                      ..+.++.|.+.++     .+.. +. ...+ ++|+.|++.++.+..   +..-+..+|.|+.|++.+|....+.......
T Consensus       114 ~~~~l~~L~l~~n-----~i~~i~~~~~~~~~nL~~L~l~~N~i~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~  185 (394)
T COG4886         114 ELTNLTSLDLDNN-----NITDIPPLIGLLKSNLKELDLSDNKIES---LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL  185 (394)
T ss_pred             cccceeEEecCCc-----ccccCccccccchhhcccccccccchhh---hhhhhhccccccccccCCchhhhhhhhhhhh
Confidence            3466888888888     5555 33 3334 388888888887653   2234677888888888888755544433355


Q ss_pred             CCcCeEEEeccCCCCCCCeEEEEecCC-eeeEEEecCC-CCc-eeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh
Q 012562          220 TSLKSLTLDNFGGDESGNYKVKIACPN-LVSFNFLASW-APD-FAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN  296 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~-L~~L~l~~~~-~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~  296 (461)
                      +.|+.|.++++.+   ..++..+..++ |++|.+.++. ... ..+....++..+.+..+.          ...+...+.
T Consensus       186 ~~L~~L~ls~N~i---~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~----------~~~~~~~~~  252 (394)
T COG4886         186 SNLNNLDLSGNKI---SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK----------LEDLPESIG  252 (394)
T ss_pred             hhhhheeccCCcc---ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce----------eeeccchhc
Confidence            7788888887763   23332223444 7888777752 111 122334444444431111          001234556


Q ss_pred             cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562          297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM  339 (461)
Q Consensus       297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  339 (461)
                      .+++++.|.+..+.+..+..      +. .+.+++.|++..+.
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~------~~-~~~~l~~L~~s~n~  288 (394)
T COG4886         253 NLSNLETLDLSNNQISSISS------LG-SLTNLRELDLSGNS  288 (394)
T ss_pred             cccccceecccccccccccc------cc-ccCccCEEeccCcc
Confidence            67778888888877653322      33 55678888886553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.88  E-value=0.0032  Score=40.30  Aligned_cols=34  Identities=35%  Similarity=0.350  Sum_probs=15.9

Q ss_pred             cccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          172 RLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       172 ~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      +|++|+|.++.+++   +...+++||+|+.|++++|.
T Consensus         2 ~L~~L~l~~N~i~~---l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITD---LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SS---HGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcc---cCchHhCCCCCCEEEecCCC
Confidence            45555555554442   23334555555555555553

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.85  E-value=0.00038  Score=63.06  Aligned_cols=132  Identities=19%  Similarity=0.164  Sum_probs=71.0

Q ss_pred             ccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeE-EEEecCCe
Q 012562          169 GFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYK-VKIACPNL  247 (461)
Q Consensus       169 ~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L  247 (461)
                      ..+.|++|+|++|.++.   +..-+.-.|.++.|+++.|.+.....+ ..-++|..|++++|..   ..+. +....-|+
T Consensus       282 TWq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~i~~v~nL-a~L~~L~~LDLS~N~L---s~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNRIRTVQNL-AELPQLQLLDLSGNLL---AECVGWHLKLGNI  354 (490)
T ss_pred             hHhhhhhccccccchhh---hhhhhhhccceeEEeccccceeeehhh-hhcccceEeecccchh---HhhhhhHhhhcCE
Confidence            35567777777776653   233344457777777777542211110 0125677777776652   1221 33456677


Q ss_pred             eeEEEecCCCCcee-eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhc
Q 012562          248 VSFNFLASWAPDFA-FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHF  315 (461)
Q Consensus       248 ~~L~l~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~  315 (461)
                      +.|.+.++...+.+ +..+=+|+.+++.-+...  .     .. -.+-++++|.++.|.+.+|.+..+.
T Consensus       355 KtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie--~-----ld-eV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  355 KTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE--E-----LD-EVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eeeehhhhhHhhhhhhHhhhhheeccccccchh--h-----HH-HhcccccccHHHHHhhcCCCccccc
Confidence            78877775443322 233445666666322110  0     11 1233567899999999988765443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.75  E-value=0.006  Score=39.03  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=26.9

Q ss_pred             CCccEEEeceeccccccccC-CC-ccccCcccEEEeeeEEEcC
Q 012562          145 ESLEALKLACRQLRMCVLKL-PF-SVGFSRLKSLDLHNVEFLD  185 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~-~~-~~~l~~L~~L~L~~~~~~~  185 (461)
                      ++|++|+|+++     .+.. |. +..|++|++|+++++.+++
T Consensus         1 ~~L~~L~l~~N-----~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNN-----QITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSS-----S-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCC-----CCcccCchHhCCCCCCEEEecCCCCCC
Confidence            46888888888     6666 44 7788999999998887764

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.70  E-value=0.0013  Score=70.58  Aligned_cols=16  Identities=19%  Similarity=0.223  Sum_probs=8.9

Q ss_pred             HhcCCCccEEEEecch
Q 012562          295 LNELCEVKALKLSTAF  310 (461)
Q Consensus       295 l~~l~~l~~L~l~~~~  310 (461)
                      +.++.+++.|.+..+.
T Consensus       713 ~~~l~~L~~L~i~~~~  728 (889)
T KOG4658|consen  713 LGSLGNLEELSILDCG  728 (889)
T ss_pred             cccccCcceEEEEcCC
Confidence            3445566666665544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.44  E-value=0.011  Score=53.91  Aligned_cols=87  Identities=18%  Similarity=0.262  Sum_probs=61.1

Q ss_pred             CCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcch
Q 012562          265 LDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVV  344 (461)
Q Consensus       265 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  344 (461)
                      +..+.++++..+..     ++  ...+..++..+|+++.|+|+.|.+..     ..+.+|....+|+.|-+......|..
T Consensus        70 ~~~v~elDL~~N~i-----Sd--WseI~~ile~lP~l~~LNls~N~L~s-----~I~~lp~p~~nl~~lVLNgT~L~w~~  137 (418)
T KOG2982|consen   70 VTDVKELDLTGNLI-----SD--WSEIGAILEQLPALTTLNLSCNSLSS-----DIKSLPLPLKNLRVLVLNGTGLSWTQ  137 (418)
T ss_pred             hhhhhhhhcccchh-----cc--HHHHHHHHhcCccceEeeccCCcCCC-----ccccCcccccceEEEEEcCCCCChhh
Confidence            44555555543322     11  56688889999999999999887542     13444435668898888766667777


Q ss_pred             hhHhhhhccCCCcceEEEEec
Q 012562          345 PSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       345 l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      ...  ++...|.++.|+++.+
T Consensus       138 ~~s--~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  138 STS--SLDDLPKVTELHMSDN  156 (418)
T ss_pred             hhh--hhhcchhhhhhhhccc
Confidence            777  8888999998888775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.36  E-value=0.002  Score=57.53  Aligned_cols=107  Identities=22%  Similarity=0.158  Sum_probs=67.1

Q ss_pred             cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe--c
Q 012562          143 TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS--S  219 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~--~  219 (461)
                      ....|..|++.++     .+.. ..+-.+|+|++|.++.+.+.....+..++..||+|.+|.+++|+++.+..+.-.  -
T Consensus        41 ~~~~le~ls~~n~-----gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   41 EFVELELLSVINV-----GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             cccchhhhhhhcc-----ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence            3556777777776     5544 355578899999999884433336777788889999999999876543322211  1


Q ss_pred             CCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEec
Q 012562          220 TSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLA  254 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~  254 (461)
                      ++|..|.+.+|.........  +..-+|+|++|+-.+
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            56777777777631111111  122367777776554

>PLN03150 hypothetical protein; Provisional

Probab=95.33  E-value=0.01  Score=62.16  Aligned_cols=81  Identities=21%  Similarity=0.141  Sum_probs=47.5

Q ss_pred             cccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEE-EEecCCeee
Q 012562          172 RLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKV-KIACPNLVS  249 (461)
Q Consensus       172 ~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~-~~~~p~L~~  249 (461)
                      .++.|+|.++.+.+  .+..-+..++.|+.|+|++|.+.+.....+. .++|+.|++.+|.+  .+.+.- .-.+++|++
T Consensus       419 ~v~~L~L~~n~L~g--~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l--sg~iP~~l~~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDNQGLRG--FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF--NGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEEECCCCCccc--cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC--CCCCchHHhcCCCCCE
Confidence            36667777766654  3444466777777777777765443222222 36777777777764  223321 125677777


Q ss_pred             EEEecCC
Q 012562          250 FNFLASW  256 (461)
Q Consensus       250 L~l~~~~  256 (461)
                      |+++++.
T Consensus       495 L~Ls~N~  501 (623)
T PLN03150        495 LNLNGNS  501 (623)
T ss_pred             EECcCCc
Confidence            7777644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.16  E-value=0.022  Score=49.01  Aligned_cols=83  Identities=22%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             cCCCccEEEeceeccccccccC--CCc-cccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc---eEEE
Q 012562          143 TCESLEALKLACRQLRMCVLKL--PFS-VGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF---KILD  216 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~--~~~-~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~---~~~~  216 (461)
                      ..++|..|.|+++     .+..  |.. ..+|+|++|.|.+|.+-.-.++.. +..||.|++|++.++.....   +.-.
T Consensus        62 ~l~rL~tLll~nN-----rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yv  135 (233)
T KOG1644|consen   62 HLPRLHTLLLNNN-----RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYV  135 (233)
T ss_pred             CccccceEEecCC-----cceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEE
Confidence            3678999999999     4444  433 358899999999987754434444 56899999999999874332   2222


Q ss_pred             Ee-cCCcCeEEEeccC
Q 012562          217 IS-STSLKSLTLDNFG  231 (461)
Q Consensus       217 i~-~~~L~~L~l~~~~  231 (461)
                      +. -|+|+.|++..-.
T Consensus       136 l~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQKVT  151 (233)
T ss_pred             EEecCcceEeehhhhh
Confidence            22 3889999887543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.02  E-value=0.0053  Score=60.60  Aligned_cols=168  Identities=23%  Similarity=0.232  Sum_probs=107.9

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCC-CccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCE-SLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~-~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      .+..+++.... ...+|....... +|+.|+++++     .+.. + ....+++|+.|.+..+.+.+   +.......+.
T Consensus       117 ~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-----~i~~l~~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~~~  187 (394)
T COG4886         117 NLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-----KIESLPSPLRNLPNLKNLDLSFNDLSD---LPKLLSNLSN  187 (394)
T ss_pred             ceeEEecCCcc-cccCccccccchhhccccccccc-----chhhhhhhhhccccccccccCCchhhh---hhhhhhhhhh
Confidence            46666664332 567777777774 9999999999     6665 3 56789999999999998774   4444447899


Q ss_pred             ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc--eeeeCCCCceEEEEEEE
Q 012562          199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD--FAFEDLDSLQNAFIFFD  276 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~L~~l~l~~~  276 (461)
                      |+.|+++++.+..+....-....|++|.+.++..  ...+...-...++..+.+.+.....  ..+..+++++.+++.-+
T Consensus       188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             hhheeccCCccccCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence            9999999986443332111223488888887741  1111112245566666655543333  34566777888888443


Q ss_pred             eecCCCCchhhHHHHHHHHhcCCCccEEEEecchh
Q 012562          277 IIDRDERDNESCHILSKLLNELCEVKALKLSTAFL  311 (461)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  311 (461)
                      ..          ..+.. +..+.+++.|.++++.+
T Consensus       266 ~i----------~~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         266 QI----------SSISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cc----------ccccc-ccccCccCEEeccCccc
Confidence            22          11222 56778899999988754

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.93  E-value=0.00074  Score=60.65  Aligned_cols=35  Identities=20%  Similarity=0.107  Sum_probs=16.7

Q ss_pred             CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEec
Q 012562          220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLA  254 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~  254 (461)
                      ++|+.|.+..|++.+...+....++|+|+.|.+..
T Consensus        63 trLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   63 TRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            33444444434332233333334677777776655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.92  E-value=0.0018  Score=65.66  Aligned_cols=61  Identities=20%  Similarity=0.248  Sum_probs=38.1

Q ss_pred             CcccEEEEEEeccCCchh---HHHHHHHHHhcCCeEEEEE-EcceeeeCCCCcccCCCccEEEecee
Q 012562           93 VSIQRFRLYCLSYANDYT---VYRWVCAVARRNVQVFDLT-VYGEVTELPHCLVTCESLEALKLACR  155 (461)
Q Consensus        93 ~~i~~l~l~~~~~~~~~~---~~~wi~~~~~~~l~~L~l~-~~~~~~~lp~~l~~~~~L~~L~L~~~  155 (461)
                      ++++.|+.......+...   +.+.++..  ...+.|.+. .+.....-|-.++...+|++|.|.+|
T Consensus        55 ~~~~~f~a~~s~~ads~vl~qLq~i~d~l--qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~  119 (1096)
T KOG1859|consen   55 APVDYFRAYVSDNADSRVLEQLQRILDFL--QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGC  119 (1096)
T ss_pred             CCCceeEEecCCcccchHHHHHHHHHHHH--hhheeeeecccCCCCCCCCceeccccceeeEEecCc
Confidence            678888887766444333   33333332  235556663 33322222888999999999999999

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.87  E-value=0.0039  Score=59.03  Aligned_cols=60  Identities=25%  Similarity=0.304  Sum_probs=33.4

Q ss_pred             cccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          141 LVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      +...++|+.|+|+++     .+.+ | ....+..|++|+++.+.|.   .++..+--...||.+..+.++
T Consensus       431 l~~l~kLt~L~L~NN-----~Ln~LP~e~~~lv~Lq~LnlS~NrFr---~lP~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNN-----LLNDLPEEMGSLVRLQTLNLSFNRFR---MLPECLYELQTLETLLASNNQ  492 (565)
T ss_pred             HHhhhcceeeecccc-----hhhhcchhhhhhhhhheecccccccc---cchHHHhhHHHHHHHHhcccc
Confidence            334666777777776     5555 4 3445566777777666654   334444334445555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=94.81  E-value=0.079  Score=57.32  Aligned_cols=39  Identities=23%  Similarity=0.142  Sum_probs=18.1

Q ss_pred             ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee
Q 012562          167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC  207 (461)
Q Consensus       167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c  207 (461)
                      +..+|.|+.|+|++|.-..  .++..++.+-+|+.|+++++
T Consensus       567 f~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t  605 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDT  605 (889)
T ss_pred             HhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCC
Confidence            3345555555555432211  34444444555555555553

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.14  E-value=0.077  Score=50.91  Aligned_cols=37  Identities=24%  Similarity=0.463  Sum_probs=33.2

Q ss_pred             CCCCChHHHHHHhcCCC-hhHHHHHHHHhHhHHHhhcc
Q 012562           18 LCSLPEPVIHQIFSFME-TIDVVRASAVSRKWRYLWLS   54 (461)
Q Consensus        18 is~LPd~iL~~Ils~Lp-~~d~~~~s~vskrWr~lw~~   54 (461)
                      .++||+|+|..|..+|| .-|.+|-+.||+.||.....
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            57899999999999997 57999999999999986554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=93.02  E-value=0.065  Score=49.56  Aligned_cols=37  Identities=19%  Similarity=0.615  Sum_probs=34.3

Q ss_pred             CCCCCCCC----hHHHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562           15 GDRLCSLP----EPVIHQIFSFMETIDVVRASAVSRKWRYL   51 (461)
Q Consensus        15 ~D~is~LP----d~iL~~Ils~Lp~~d~~~~s~vskrWr~l   51 (461)
                      .|-|..||    |+|-..||++|...+...+-+|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            56788999    99999999999999999999999999964

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.19  E-value=0.13  Score=47.35  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=30.9

Q ss_pred             CCCCCCChHHHHHHhc-----CCChhHHHHHHHHhHhHHHh
Q 012562           16 DRLCSLPEPVIHQIFS-----FMETIDVVRASAVSRKWRYL   51 (461)
Q Consensus        16 D~is~LPd~iL~~Ils-----~Lp~~d~~~~s~vskrWr~l   51 (461)
                      +.|+.||||||..||.     .|+.++..++|+|||.|+..
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            4578999999999997     45679999999999999853

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.25  E-value=0.21  Score=45.17  Aligned_cols=188  Identities=14%  Similarity=0.049  Sum_probs=98.1

Q ss_pred             CCCccEEEeceeccccccccC-------CCccccCcccEEEeeeEEEcCh---------hhHHHHhhcCccccceEEeee
Q 012562          144 CESLEALKLACRQLRMCVLKL-------PFSVGFSRLKSLDLHNVEFLDH---------NLLHKFVSSRRLLEKLILKSC  207 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~-------~~~~~l~~L~~L~L~~~~~~~~---------~~l~~l~~~cp~Le~L~L~~c  207 (461)
                      ..+++.++|+++     .+..       .....-.+|+.-++++. |++.         ..+...+.+||.|+..+|++|
T Consensus        29 ~d~~~evdLSGN-----tigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          29 MDELVEVDLSGN-----TIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             hcceeEEeccCC-----cccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            557888888888     5544       12223345555555432 1211         122334557888888888886


Q ss_pred             ecCCceEEEEecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCcee----------------eeCCCCceE
Q 012562          208 SFRDFKILDISSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFA----------------FEDLDSLQN  270 (461)
Q Consensus       208 ~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~----------------~~~~~~L~~  270 (461)
                      .+.. ..                    .+.+. ..-....|+.|.++.+...++.                ..+.|.|+.
T Consensus       103 Afg~-~~--------------------~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~  161 (388)
T COG5238         103 AFGS-EF--------------------PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV  161 (388)
T ss_pred             ccCc-cc--------------------chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence            4321 00                    01111 1225667888888875544331                123466666


Q ss_pred             EEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhcccc-ccccCCcccCcccEEEEEEeCC---Ccchhh
Q 012562          271 AFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLE-ERGFIPNSFNYLKSLVLSVSMA---DWVVPS  346 (461)
Q Consensus       271 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~---~~~~l~  346 (461)
                      +..+-+..  .+.+   .......+..=.+++.+.+..|.+..-.... ....+. ...+|+.|++..+..   ..-.+.
T Consensus       162 vicgrNRl--engs---~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         162 VICGRNRL--ENGS---KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             EEeccchh--ccCc---HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHH
Confidence            66533221  1222   1223334444457888888887755210000 011122 456788888876654   233334


Q ss_pred             HhhhhccCCCcceEEEEecc
Q 012562          347 IISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       347 ~~~lL~~~p~L~~L~l~~~~  366 (461)
                      .  .+..+|.|+.|.+..|.
T Consensus       236 ~--al~~W~~lrEL~lnDCl  253 (388)
T COG5238         236 D--ALCEWNLLRELRLNDCL  253 (388)
T ss_pred             H--Hhcccchhhhccccchh
Confidence            3  66778888888887775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.76  E-value=0.13  Score=46.21  Aligned_cols=38  Identities=29%  Similarity=0.329  Sum_probs=16.9

Q ss_pred             cCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          170 FSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       170 l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      +|+|++|.|++|.+.+-..+.. +...++|..|++.+|.
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCS  127 (260)
T ss_pred             CCceeEEeecCCccccccccch-hhhhcchhhhhcccCC
Confidence            3555555555555443211111 2334445555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=89.52  E-value=0.0062  Score=61.97  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=15.3

Q ss_pred             CCccEEEeceeccccccccC-CCccccCcccEEEeeeEEE
Q 012562          145 ESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEF  183 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~  183 (461)
                      +.|++|+|+.|     .+.. .....|+.|++|+|+.|..
T Consensus       187 ~ale~LnLshN-----k~~~v~~Lr~l~~LkhLDlsyN~L  221 (1096)
T KOG1859|consen  187 PALESLNLSHN-----KFTKVDNLRRLPKLKHLDLSYNCL  221 (1096)
T ss_pred             HHhhhhccchh-----hhhhhHHHHhcccccccccccchh
Confidence            34445555555     3333 2333445555555554443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=88.70  E-value=0.05  Score=54.05  Aligned_cols=103  Identities=25%  Similarity=0.153  Sum_probs=55.7

Q ss_pred             cccCCCccEEEeceeccccccccC-CC-ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562          141 LVTCESLEALKLACRQLRMCVLKL-PF-SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS  218 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~-~~-~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~  218 (461)
                      +..+.+|..|++..+     .+.. .. ...+++|++|+|+++.+++-..+    ..++.|+.|++.+|.+..+..... 
T Consensus        91 l~~~~~l~~l~l~~n-----~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~-  160 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-----KIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLES-  160 (414)
T ss_pred             cccccceeeeecccc-----chhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCcc-
Confidence            445677777887777     5555 33 56677788888877777654222    334557777777765333221111 


Q ss_pred             cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEec
Q 012562          219 STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLA  254 (461)
Q Consensus       219 ~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~  254 (461)
                      .++|+.+.+..+.+...+... ....++|+.+.+.+
T Consensus       161 l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG  195 (414)
T ss_pred             chhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence            345555555555431111100 12344555555555

>PF13013 F-box-like_2: F-box-like domain

Probab=86.50  E-value=1.2  Score=34.70  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=26.9

Q ss_pred             CCCCCChHHHHHHhcCCChhHHHHHHHHhH
Q 012562           17 RLCSLPEPVIHQIFSFMETIDVVRASAVSR   46 (461)
Q Consensus        17 ~is~LPd~iL~~Ils~Lp~~d~~~~s~vsk   46 (461)
                      .+.+||+||+..|+.+-...+...+...++
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            588999999999999999999988887776

>PRK15386 type III secretion protein GogB; Provisional

Probab=85.57  E-value=1.5  Score=42.86  Aligned_cols=131  Identities=17%  Similarity=0.222  Sum_probs=64.1

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      +++++|+++.. ....+|.   --++|++|.+++|.    .+.. |.. -.++|++|++.+|....  .+      -+.|
T Consensus        52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~----nLtsLP~~-LP~nLe~L~Ls~Cs~L~--sL------P~sL  114 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCN----NLTTLPGS-IPEGLEKLTVCHCPEIS--GL------PESV  114 (426)
T ss_pred             cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCC----CcccCCch-hhhhhhheEccCccccc--cc------cccc
Confidence            67888888543 2333441   12368888888872    2322 221 13578888888763211  11      2457


Q ss_pred             cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCCceeeeCC-CCceEEEEE
Q 012562          200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAPDFAFEDL-DSLQNAFIF  274 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~-~~L~~l~l~  274 (461)
                      +.|.+..+...   .+..-.++|+.|.+..+..  ....... .--++|++|.+.++...... ..+ .+|+.+.++
T Consensus       115 e~L~L~~n~~~---~L~~LPssLk~L~I~~~n~--~~~~~lp~~LPsSLk~L~Is~c~~i~LP-~~LP~SLk~L~ls  185 (426)
T PRK15386        115 RSLEIKGSATD---SIKNVPNGLTSLSINSYNP--ENQARIDNLISPSLKTLSLTGCSNIILP-EKLPESLQSITLH  185 (426)
T ss_pred             ceEEeCCCCCc---ccccCcchHhheecccccc--ccccccccccCCcccEEEecCCCcccCc-ccccccCcEEEec
Confidence            77777643211   1122224677777643221  0000000 11246788888764432211 112 356666663

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=85.22  E-value=0.15  Score=50.61  Aligned_cols=61  Identities=25%  Similarity=0.191  Sum_probs=28.6

Q ss_pred             ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccC
Q 012562          167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFG  231 (461)
Q Consensus       167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~  231 (461)
                      ...+.+|+.|+|..+.+..   +..++.++++|+.|+|+++.+..+..+.- .+.|+.|.+.+|.
T Consensus        91 l~~~~~l~~l~l~~n~i~~---i~~~l~~~~~L~~L~ls~N~I~~i~~l~~-l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK---IENLLSSLVNLQVLDLSFNKITKLEGLST-LTLLKELNLSGNL  151 (414)
T ss_pred             cccccceeeeeccccchhh---cccchhhhhcchheeccccccccccchhh-ccchhhheeccCc
Confidence            3445555555555555442   22224455566666666554333222111 1225555555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=84.22  E-value=0.043  Score=54.57  Aligned_cols=65  Identities=20%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             eCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          136 ELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      .+|..+.++..|+.|+|+.+     .+.. |....+=-|+.|-+.++.++.-   ..-+...+.|..|+.+.|.
T Consensus       112 ~ip~~i~~L~~lt~l~ls~N-----qlS~lp~~lC~lpLkvli~sNNkl~~l---p~~ig~~~tl~~ld~s~ne  177 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSN-----QLSHLPDGLCDLPLKVLIVSNNKLTSL---PEEIGLLPTLAHLDVSKNE  177 (722)
T ss_pred             ecchhhhhhhHHHHhhhccc-----hhhcCChhhhcCcceeEEEecCccccC---CcccccchhHHHhhhhhhh
Confidence            45555555666666666666     4433 3222333456666665554421   2123345666666666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.52  E-value=0.6  Score=40.48  Aligned_cols=69  Identities=22%  Similarity=0.267  Sum_probs=46.8

Q ss_pred             eeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          135 TELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      +.+|..-..--.++.++=+++     .+..   .....+++++.|.+..+...++..+..+-...|+||.|+|++|+
T Consensus        91 ~~lp~~~~~~~~IeaVDAsds-----~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~  162 (221)
T KOG3864|consen   91 FSLPGPNADNVKIEAVDASDS-----SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP  162 (221)
T ss_pred             ecCCCCCCCcceEEEEecCCc-----hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence            344543222224555555555     3322   24557788889999999887776888877788999999999985

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=82.87  E-value=0.64  Score=47.53  Aligned_cols=38  Identities=32%  Similarity=0.562  Sum_probs=35.6

Q ss_pred             CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562           14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL   51 (461)
Q Consensus        14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~l   51 (461)
                      ..|.|+.||-|+-.+||++|+.++.++++.+|+.|+.+
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            46889999999999999999999999999999999965

>PRK15386 type III secretion protein GogB; Provisional

Probab=82.54  E-value=1.6  Score=42.69  Aligned_cols=54  Identities=13%  Similarity=0.109  Sum_probs=27.5

Q ss_pred             ccCcccEEEeeeEEEcChhhHHHHhhcCc-cccceEEeeeecCCceEEEEecCCcCeEEEecc
Q 012562          169 GFSRLKSLDLHNVEFLDHNLLHKFVSSRR-LLEKLILKSCSFRDFKILDISSTSLKSLTLDNF  230 (461)
Q Consensus       169 ~l~~L~~L~L~~~~~~~~~~l~~l~~~cp-~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~  230 (461)
                      .++++++|+++++.++.   ++    ..| +|+.|.+.+|......+ ..-.++|++|.+..|
T Consensus        50 ~~~~l~~L~Is~c~L~s---LP----~LP~sLtsL~Lsnc~nLtsLP-~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIES---LP----VLPNELTEITIENCNNLTTLP-GSIPEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcc---cC----CCCCCCcEEEccCCCCcccCC-chhhhhhhheEccCc
Confidence            35677777777664432   22    223 47777777664211000 011246777777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	4e-06
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	3e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 1e-10
 Identities = 79/536 (14%), Positives = 152/536 (28%), Gaps = 172/536 (32%)

Query: 60  FDMSTISSNPQEIWSHEKFKDFVN------------WVLLSQSGSVSIQRFRLYCLSYAN 107
           FD   +   P+ I S E+    +             W LLS+   + +Q+F    L    
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRI-- 89

Query: 108 DY----TVYRWVCAVARRNVQVFDLTV---YGEVTELPHCLVT-CESLEALKLACRQLR- 158
           +Y    +  +          +++       Y +        V+  +    L+ A  +LR 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 159 --------M--C---VL------------KLPF-----SVGFSRLKSLDLHNVEFLDHNL 188
                   +       +            K+ F     ++         L  ++ L + +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 189 LHKFVSS------------------RRLLEK-------LILKS-CSFRDFKILDISSTSL 222
              + S                   RRLL+        L+L +  + + +   ++S   L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 223 -----KSLTLDNFGGDESGNYKVKIACPNLV---SFNFLASWAPDFAFEDL-------DS 267
                K +T D      + +  +      L      + L  +  D   +DL       + 
Sbjct: 270 LTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNP 327

Query: 268 LQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHF----VLEERGFI 323
            + + I   I D     +   H+    L  + E     L  A  R  F    V      I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 324 PNSFNYLKSLVLSV---SMADWVVPSII------SLLNCSPNLEALTIY----------- 363
           P       +++LS+    +    V  ++      SL+   P    ++I            
Sbjct: 388 P-------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 364 ------------------FEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVR 405
                             F+ +D     +       +  HLK +E          + L R
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE------RMTLFR 494

Query: 406 FLLKNGHVLKKLSFSWMEDVENRKEIISRIMKLPRSSSNVALEFLEPKPHDDFLKY 461
            +         L F ++E    +K I  R      ++S   L  L+         Y
Sbjct: 495 MVF--------LDFRFLE----QK-I--RHDSTAWNASGSILNTLQ-----QLKFY 530

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 70/397 (17%), Positives = 122/397 (30%), Gaps = 63/397 (15%)

Query: 16  DRLCSLPEPVIHQIFSFME-TIDVVRASAVSRKWRYLW-LSVPYLSFDMSTISSNPQEIW 73
               S PE V+  +FSF++   D    S V + W  +       +        S      
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT--- 60

Query: 74  SHEKFKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGE 133
                + F     +   G      F L    +     VY W+ A++     + ++     
Sbjct: 61  ---VIRRFPKVRSVELKGKPHFADFNLVPDGWGGY--VYPWIEAMSSSYTWLEEIR---- 111

Query: 134 VTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFV 193
              L   +VT + LE +                +  F   K L L + E    + L    
Sbjct: 112 ---LKRMVVTDDCLELI----------------AKSFKNFKVLVLSSCEGFSTDGLAAIA 152

Query: 194 SSRRLLEKLILKSCSFRD-----FKILDISSTSLKSLTLDNFGGDESGNYKVKIA--CPN 246
           ++ R L++L L+     D           + TSL SL +     + S +   ++   CPN
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 247 LVSFNFLAS---WAPDFAFEDLDSLQN-AFIFFDIIDRDERDNESCHILSKLLNELCEVK 302
           L S     +          +    L+      +    R +  +     LS      C   
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 303 ALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTI 362
                 A+L           + +  + L +L L  S A      ++ LL   P L+ L +
Sbjct: 273 FWDAVPAYLP---------AVYSVCSRLTTLNL--SYATVQSYDLVKLLCQCPKLQRLWV 321

Query: 363 YFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDEN 399
                  D   I +  +  L    K +  + V   E 
Sbjct: 322 ------LD--YIEDAGLEVLASTCKDLRELRVFPSEP 350

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 63/430 (14%), Positives = 131/430 (30%), Gaps = 87/430 (20%)

Query: 20  SLPEPVIHQIFSFME-TIDVVRASAVSRKWRYL-WLSVPYLSFDMSTISSNPQEIWSHEK 77
           +  + VI Q+ +++    D   AS V R+W  +   +  +++  +   ++  +       
Sbjct: 15  ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRL------ 68

Query: 78  FKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTEL 137
            + F N   L   G      F L   ++     V  WV  ++    Q+  +         
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGY--VTPWVTEISNNLRQLKSVH-------F 119

Query: 138 PHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197
              +V+   L+ L  A                   L++L L        + L   V+  R
Sbjct: 120 RRMIVSDLDLDRLAKAR---------------ADDLETLKLDKCSGFTTDGLLSIVTHCR 164

Query: 198 LLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWA 257
            ++ L+++  S       +     L  L                    +L   NF  +  
Sbjct: 165 KIKTLLMEESS-----FSEKDGKWLHELAQ---------------HNTSLEVLNFYMTEF 204

Query: 258 PDFAFEDLDSLQNAFIF---FDIIDRDERDNESCHILSKLLNELC-----EVKALKLSTA 309
              + +DL+++           + D +  +       +  L E C     E   +     
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264

Query: 310 FLRFHFVLEERGFIPNSFNYLKSLV--------LSVSMADWVVPSIISLLNCSPNLEALT 361
            L F   L   G      N +  L         L +  A        +L+   PNLE L 
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324

Query: 362 IYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELEL-----------VRFLLKN 410
                 +     I ++ +  L  + K ++ + +    +E  +           +  L + 
Sbjct: 325 T----RNV----IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376

Query: 411 GHVLKKLSFS 420
              L+ ++  
Sbjct: 377 CQELEYMAVY 386

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 36/223 (16%), Positives = 81/223 (36%), Gaps = 15/223 (6%)

Query: 11  REDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL-WLSVPYLSFDMSTISSNP 69
               G    SLP+ ++  IFS +   ++++ S V ++W  L      + + D++  + +P
Sbjct: 2   ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP 61

Query: 70  QEIWSHEKFKDFV---NWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVF 126
                               + Q  +     FR+  +  +N       +  +  +  ++ 
Sbjct: 62  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121

Query: 127 DLTVYG-EVT-ELPHCLVTCESLEALKLA-CRQLRMCVLKLPFSVGFSRLKSLDLHNVEF 183
           +L++ G  ++  + + L    +L  L L+ C       L+   S   SRL  L+L     
Sbjct: 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFD 180

Query: 184 LDHNLLHKFVSSR-RLLEKLILKSCSFRDFKILDISSTSLKSL 225
                +   V+     + +L L           ++  + L +L
Sbjct: 181 FTEKHVQVAVAHVSETITQLNLSGYRK------NLQKSDLSTL 217

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 11 REDDGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL 51
              G    SLP+ ++  IFS +   ++++ S V ++W  L
Sbjct: 2  ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 15/70 (21%)

Query: 15 GDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYLSFDMSTISSNPQEIWS 74
             L  LP  V   I SF+   D+ +  + +  W                       +W 
Sbjct: 2  ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET---------------VRDPILWR 46

Query: 75 HEKFKDFVNW 84
          +   +D  +W
Sbjct: 47 YFLLRDLPSW 56

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 6  ESPKCREDDGDRLCSLPEPVIHQIFSFMETIDVVRA-SAVSRKWRYLWLSVPYLSFDM 62
             +   +  + L  LPEP++ ++ + +   ++V+A   V  +W+ L +    L    
Sbjct: 39 AEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL-VDGAPLWLLK 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	461
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.2
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.18
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.1
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.1
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.03
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.02
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.02
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.01
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.99
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.99
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.98
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.98
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.98
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.97
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.93
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.79
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.51
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.43
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.43
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.42
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.41
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.41
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.38
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.37
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.36
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.33
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.2
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.2
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.02
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.0
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.97
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.95
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.92
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.81
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.8
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.75
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.47
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.41
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.31
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.26
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.21
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.11
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.1
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.08
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.01
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.98
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.79
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.73
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	80.8

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=1.5e-21  Score=201.77  Aligned_cols=274  Identities=12%  Similarity=0.116  Sum_probs=140.6

Q ss_pred             CCCCCC----CCChHHHHHHhcCC-ChhHHHHHHHHhHhHHHhhccCCe-eEeecCCcCCCcc-----------------
Q 012562           14 DGDRLC----SLPEPVIHQIFSFM-ETIDVVRASAVSRKWRYLWLSVPY-LSFDMSTISSNPQ-----------------   70 (461)
Q Consensus        14 ~~D~is----~LPd~iL~~Ils~L-p~~d~~~~s~vskrWr~lw~~~~~-l~~~~~~~~~~~~-----------------   70 (461)
                      +.|+++    +||||||.+||+|| |.+|++++++|||||++++...+. +.+.. .+.....                 
T Consensus         5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~   83 (592)
T 3ogk_B            5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTATPDRLSRRFPNLRSLKLKGK   83 (592)
T ss_dssp             -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGSCHHHHHHHCTTCSEEEEECS
T ss_pred             hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccccChHHHHHhCCCCeEEEecCC
Confidence            345655    89999999999999 899999999999999988643321 22111 1110000                 


Q ss_pred             -chh-------cHhH-HHHHHHHHHhcCCCCCcccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcce--eeeCCC
Q 012562           71 -EIW-------SHEK-FKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGE--VTELPH  139 (461)
Q Consensus        71 -~~~-------~~~~-~~~~v~~~l~~~~~~~~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~--~~~lp~  139 (461)
                       ...       .... ....+..+....   +.++.+.++....  .+..-.|+......++++|++.....  ...++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~L~~L~L~~~~i--~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~  158 (592)
T 3ogk_B           84 PRAAMFNLIPENWGGYVTPWVTEISNNL---RQLKSVHFRRMIV--SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS  158 (592)
T ss_dssp             CGGGGGTCSCTTSCCBCHHHHHHHHHHC---TTCCEEEEESCBC--CHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH
T ss_pred             cchhhcccccccccccchHHHHHHHhhC---CCCCeEEeeccEe--cHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH
Confidence             000       0000 000111111111   2355555554321  12223344443334477777743221  112222


Q ss_pred             CcccCCCccEEEeceeccccccccCC-------CccccCcccEEEeeeEEEc--ChhhHHHHhhcCccccceEEeeeecC
Q 012562          140 CLVTCESLEALKLACRQLRMCVLKLP-------FSVGFSRLKSLDLHNVEFL--DHNLLHKFVSSRRLLEKLILKSCSFR  210 (461)
Q Consensus       140 ~l~~~~~L~~L~L~~~~~~~~~l~~~-------~~~~l~~L~~L~L~~~~~~--~~~~l~~l~~~cp~Le~L~L~~c~~~  210 (461)
                      .+..|++|++|+|++|     .+.+.       ....+++|++|+|.++.++  +...+..++.+||+|+.|+|.+|...
T Consensus       159 ~~~~~~~L~~L~L~~~-----~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          159 IVTHCRKIKTLLMEES-----SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             HHHHCTTCSEEECTTC-----EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             HHhhCCCCCEEECccc-----cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            2335778888888877     44331       1235778888888777765  22367777788888888888887643


Q ss_pred             CceEEEEecCCcCeEEEeccCCC------------------------CCCCeE-EEEecCCeeeEEEecCCCCcee----
Q 012562          211 DFKILDISSTSLKSLTLDNFGGD------------------------ESGNYK-VKIACPNLVSFNFLASWAPDFA----  261 (461)
Q Consensus       211 ~~~~~~i~~~~L~~L~l~~~~~~------------------------~~~~~~-~~~~~p~L~~L~l~~~~~~~~~----  261 (461)
                      ++.......++|++|.+..+...                        ....+. +.-.+++|++|.++++......    
T Consensus       234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~  313 (592)
T 3ogk_B          234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL  313 (592)
T ss_dssp             GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred             HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence            32211111245555555422100                        011111 1113567777777775432221    


Q ss_pred             eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEe
Q 012562          262 FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLS  307 (461)
Q Consensus       262 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  307 (461)
                      +..+++|+.+++.-+       ..  ...+..++..+++|+.|++.
T Consensus       314 ~~~~~~L~~L~L~~~-------~~--~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          314 IQKCPNLEVLETRNV-------IG--DRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             HTTCTTCCEEEEEGG-------GH--HHHHHHHHHHCTTCCEEEEE
T ss_pred             HHhCcCCCEEeccCc-------cC--HHHHHHHHHhCCCCCEEEee
Confidence            356777777777511       01  33455666677777777777

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=2e-21  Score=200.89  Aligned_cols=38  Identities=29%  Similarity=0.516  Sum_probs=29.4

Q ss_pred             CCCCCCCCChHHHHHHhcCCC-hhHHHHHHHHhHhHHHh
Q 012562           14 DGDRLCSLPEPVIHQIFSFME-TIDVVRASAVSRKWRYL   51 (461)
Q Consensus        14 ~~D~is~LPd~iL~~Ils~Lp-~~d~~~~s~vskrWr~l   51 (461)
                      ..|++++||||||.+||+||| .+|++++++|||||+++
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            358999999999999999999 99999999999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=2.5e-21  Score=185.62  Aligned_cols=141  Identities=18%  Similarity=0.230  Sum_probs=90.9

Q ss_pred             CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc---CCeeEeecCCcCCCccchhcHhHHHHHHHHHHhcCC
Q 012562           14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS---VPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQS   90 (461)
Q Consensus        14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~   90 (461)
                      +...+++||||++.+||++|+.+|+++++.|||+|+.+...   ...+++....+.                        
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------   60 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------   60 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence            35668999999999999999999999999999999998532   112222211110                        


Q ss_pred             CCCcccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---C-C
Q 012562           91 GSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---P-F  166 (461)
Q Consensus        91 ~~~~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~-~  166 (461)
                                           ...+.....++++.+++.... ....+..++.+++|++|+|++|     .+..   + .
T Consensus        61 ---------------------~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~-----~l~~~~~~~~  113 (336)
T 2ast_B           61 ---------------------PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNS-----VIEVSTLHGI  113 (336)
T ss_dssp             ---------------------HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTC-----EECHHHHHHH
T ss_pred             ---------------------HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCC-----CcCHHHHHHH
Confidence                                 112333334566667663332 1223334566788888888888     4332   1 3


Q ss_pred             ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee
Q 012562          167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC  207 (461)
Q Consensus       167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c  207 (461)
                      ...+++|++|+|.++.+++.  ....+..||+|++|+|++|
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHH--HHHHHTTCTTCSEEECTTC
T ss_pred             HhhCCCCCEEeCcCcccCHH--HHHHHhcCCCCCEEECCCC
Confidence            45677888888887776553  3344566888888888877

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.38  E-value=1.1e-13  Score=131.80  Aligned_cols=201  Identities=17%  Similarity=0.119  Sum_probs=116.9

Q ss_pred             HHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHH
Q 012562          115 VCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKF  192 (461)
Q Consensus       115 i~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l  192 (461)
                      +......++++|++..... ..+|..++.+++|++|+|++|     .+.. | .+..+++|++|+|.++.+..   +...
T Consensus        75 l~~~~~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n-----~l~~lp~~~~~l~~L~~L~Ls~n~l~~---lp~~  145 (328)
T 4fcg_A           75 LEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAA-----GLMELPDTMQQFAGLETLTLARNPLRA---LPAS  145 (328)
T ss_dssp             HHHHTSTTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESS-----CCCCCCSCGGGGTTCSEEEEESCCCCC---CCGG
T ss_pred             HhcccccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCC-----CccchhHHHhccCCCCEEECCCCcccc---CcHH
Confidence            3334446889999876553 388998999999999999999     5544 4 56789999999999998762   3445


Q ss_pred             hhcCccccceEEeeeecCCceEEEE----------ecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCcee
Q 012562          193 VSSRRLLEKLILKSCSFRDFKILDI----------SSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFA  261 (461)
Q Consensus       193 ~~~cp~Le~L~L~~c~~~~~~~~~i----------~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~  261 (461)
                      +.+++.|+.|+|++|...+.....+          ..++|+.|.+..|.+.   .+. ..-.+++|++|.++++..... 
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~N~l~~l-  221 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSAL-  221 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCTTCCEEEEESSCCCCC-
T ss_pred             HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---cchHhhcCCCCCCEEEccCCCCCcC-
Confidence            7889999999999986433211110          1355555555555431   111 011344555555554322211 


Q ss_pred             eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCC
Q 012562          262 FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMAD  341 (461)
Q Consensus       262 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  341 (461)
                                                    ...+..+++|+.|++++|.+..    ..+..+. .+++|++|++..|...
T Consensus       222 ------------------------------~~~l~~l~~L~~L~Ls~n~~~~----~~p~~~~-~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          222 ------------------------------GPAIHHLPKLEELDLRGCTALR----NYPPIFG-GRAPLKRLILKDCSNL  266 (328)
T ss_dssp             ------------------------------CGGGGGCTTCCEEECTTCTTCC----BCCCCTT-CCCCCCEEECTTCTTC
T ss_pred             ------------------------------chhhccCCCCCEEECcCCcchh----hhHHHhc-CCCCCCEEECCCCCch
Confidence                                          1113456666666666654321    1122233 4556666666554332


Q ss_pred             cchhhHhhhhccCCCcceEEEEecc
Q 012562          342 WVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       342 ~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      .....   -+..+++|+.|+|..+.
T Consensus       267 ~~~p~---~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          267 LTLPL---DIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             CBCCT---TGGGCTTCCEEECTTCT
T ss_pred             hhcch---hhhcCCCCCEEeCCCCC
Confidence            22211   24556666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.31  E-value=3e-12  Score=123.19  Aligned_cols=264  Identities=15%  Similarity=0.100  Sum_probs=171.6

Q ss_pred             cCCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      +++++|+++.... ..+|. .+..+++|++|+|+++     .+..   ..+..+++|++|+|.++.+++  .....+.++
T Consensus        52 ~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l  123 (353)
T 2z80_A           52 EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSN-----GINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPL  123 (353)
T ss_dssp             TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTC
T ss_pred             ccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCC-----ccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCC
Confidence            4789999865542 34555 5667999999999999     5544   346789999999999998875  334557889


Q ss_pred             ccccceEEeeeecCCceE-EEE-ecCCcCeEEEeccCCCCCCCeE-EE-EecCCeeeEEEecCCCCce---eeeCCCCce
Q 012562          197 RLLEKLILKSCSFRDFKI-LDI-SSTSLKSLTLDNFGGDESGNYK-VK-IACPNLVSFNFLASWAPDF---AFEDLDSLQ  269 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~-~~i-~~~~L~~L~l~~~~~~~~~~~~-~~-~~~p~L~~L~l~~~~~~~~---~~~~~~~L~  269 (461)
                      ++|++|++++|.+..+.. -.+ ..++|++|.+.+|..  .+.+. .. -.+++|++|.++++.....   .+..+++|+
T Consensus       124 ~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  201 (353)
T 2z80_A          124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS  201 (353)
T ss_dssp             TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc--ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence            999999999987654433 112 248899999998742  11111 01 1468999999998655443   356678888


Q ss_pred             EEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhh-Hh
Q 012562          270 NAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPS-II  348 (461)
Q Consensus       270 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~-~~  348 (461)
                      ++++..+..         ......++..+++++.|++++|.+....... ..... ....++.+++..+......+. ..
T Consensus       202 ~L~l~~n~l---------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~~~-~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          202 HLILHMKQH---------ILLLEIFVDVTSSVECLELRDTDLDTFHFSE-LSTGE-TNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             EEEEECSCS---------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             eecCCCCcc---------ccchhhhhhhcccccEEECCCCccccccccc-ccccc-ccchhhccccccccccCcchhhhH
Confidence            888854422         1112334566899999999999876432211 11112 356788888877654332221 11


Q ss_pred             hhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEE--eecCChhHHHHHHHHHhcCc
Q 012562          349 SLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELI--HVAGDENELELVRFLLKNGH  412 (461)
Q Consensus       349 ~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~--~~~g~~~e~~~~~~ll~~a~  412 (461)
                      ..+..+++|+.|++..+.-.       .++..  ..+++|+++.+.  .+.+....+..+...+++..
T Consensus       271 ~~l~~l~~L~~L~Ls~N~l~-------~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~  331 (353)
T 2z80_A          271 KLLNQISGLLELEFSRNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS  331 (353)
T ss_dssp             HHHHTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhcccCCCEEECCCCCCC-------ccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhcc
Confidence            25788999999999887531       12111  235778888887  55566655666555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.20  E-value=3.1e-12  Score=122.64  Aligned_cols=251  Identities=14%  Similarity=0.109  Sum_probs=123.1

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      +++++|++.... ...+|. +..+++|++|+|++|     .+.. +.+..+++|++|+|.++.+.+.   .. +..++.|
T Consensus        66 ~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n-----~i~~~~~~~~l~~L~~L~l~~n~i~~~---~~-~~~l~~L  134 (347)
T 4fmz_A           66 TNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTN-----KITDISALQNLTNLRELYLNEDNISDI---SP-LANLTKM  134 (347)
T ss_dssp             TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-----CCCCCGGGTTCTTCSEEECTTSCCCCC---GG-GTTCTTC
T ss_pred             CCccEEEccCCc-cccchh-hhcCCcCCEEEccCC-----cccCchHHcCCCcCCEEECcCCcccCc---hh-hccCCce
Confidence            456666664332 222333 445666666666666     4433 3455566666666666655543   11 5566666


Q ss_pred             cceEEeeeecC-CceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee-eeCCCCceEEEEEEEe
Q 012562          200 EKLILKSCSFR-DFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA-FEDLDSLQNAFIFFDI  277 (461)
Q Consensus       200 e~L~L~~c~~~-~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~l~l~~~~  277 (461)
                      +.|++++|... .... -...++|++|.+.++...+...   .-.+++|++|.++++...... +..+++|+.+++..+.
T Consensus       135 ~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~  210 (347)
T 4fmz_A          135 YSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ  210 (347)
T ss_dssp             CEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             eEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCcccccccccCCCccceeecccCC
Confidence            66666665311 1111 0112556666666555311111   114566666666664433222 4455666666663221


Q ss_pred             ecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCc
Q 012562          278 IDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNL  357 (461)
Q Consensus       278 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L  357 (461)
                      .  ..        ... +..+++++.|+++++.+..+..      +. .+++|++|+++.+....-  .   .+..+|+|
T Consensus       211 l--~~--------~~~-~~~~~~L~~L~l~~n~l~~~~~------~~-~l~~L~~L~l~~n~l~~~--~---~~~~l~~L  267 (347)
T 4fmz_A          211 I--TD--------ITP-VANMTRLNSLKIGNNKITDLSP------LA-NLSQLTWLEIGTNQISDI--N---AVKDLTKL  267 (347)
T ss_dssp             C--CC--------CGG-GGGCTTCCEEECCSSCCCCCGG------GT-TCTTCCEEECCSSCCCCC--G---GGTTCTTC
T ss_pred             C--CC--------Cch-hhcCCcCCEEEccCCccCCCcc------hh-cCCCCCEEECCCCccCCC--h---hHhcCCCc
Confidence            1  00        001 4556677777777765442211      22 455777777765543221  1   34566777


Q ss_pred             ceEEEEeccCCCccccccCcCccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562          358 EALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       358 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      +.|++..+.-..       .+.....++|+.+.+.+-.-..    .....+.+.+.|+.+.+.
T Consensus       268 ~~L~l~~n~l~~-------~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          268 KMLNVGSNQISD-------ISVLNNLSQLNSLFLNNNQLGN----EDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             CEEECCSSCCCC-------CGGGGGCTTCSEEECCSSCCCG----GGHHHHHTCTTCSEEECC
T ss_pred             CEEEccCCccCC-------ChhhcCCCCCCEEECcCCcCCC----cChhHhhccccCCEEEcc
Confidence            777776654210       1011233556666665322111    111233566777777666

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.19  E-value=5.8e-13  Score=125.92  Aligned_cols=80  Identities=16%  Similarity=0.176  Sum_probs=38.2

Q ss_pred             CCeEEEEE-EcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          122 NVQVFDLT-VYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       122 ~l~~L~l~-~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .+++|+++ .+.....+|..+..+++|++|+|+++     .+..  | .+..+++|++|+|.++.+.+  .+...+..++
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-----~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~  149 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-----NVSGAIPDFLSQIKTLVTLDFSYNALSG--TLPPSISSLP  149 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-----CCEEECCGGGGGCTTCCEEECCSSEEES--CCCGGGGGCT
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-----eeCCcCCHHHhCCCCCCEEeCCCCccCC--cCChHHhcCC
Confidence            45555554 24333445555555555555555555     3321  2 23445555555555555543  1222344455


Q ss_pred             cccceEEeeee
Q 012562          198 LLEKLILKSCS  208 (461)
Q Consensus       198 ~Le~L~L~~c~  208 (461)
                      .|++|++++|.
T Consensus       150 ~L~~L~L~~N~  160 (313)
T 1ogq_A          150 NLVGITFDGNR  160 (313)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCeEECcCCc
Confidence            55555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.18  E-value=1.6e-12  Score=122.34  Aligned_cols=247  Identities=16%  Similarity=0.134  Sum_probs=150.8

Q ss_pred             eeeCCCCcccCCCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562          134 VTELPHCLVTCESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR  210 (461)
Q Consensus       134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~  210 (461)
                      ...+|..+.  ++|++|+|+++     .+.. |  .+..+++|++|+|.++.++........+.+++.|+.|++++|.+.
T Consensus        19 l~~ip~~~~--~~l~~L~L~~n-----~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~   91 (306)
T 2z66_A           19 LTSVPTGIP--SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI   91 (306)
T ss_dssp             CSSCCSCCC--TTCCEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred             cccCCCCCC--CCCCEEECCCC-----ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence            345565443  58999999999     5555 3  356899999999998877643112233457899999999998644


Q ss_pred             CceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eeeeCCCCceEEEEEEEeecCCCCchhh
Q 012562          211 DFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAFEDLDSLQNAFIFFDIIDRDERDNES  287 (461)
Q Consensus       211 ~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~  287 (461)
                      .+.......++|++|.+..+.+.+.........+++|++|.++++....   ..+..+++|+.+++..+...        
T Consensus        92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------  163 (306)
T 2z66_A           92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ--------  163 (306)
T ss_dssp             EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG--------
T ss_pred             cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc--------
Confidence            3322222348899999987764211110111256899999998854322   23556788999888332210        


Q ss_pred             HHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccC
Q 012562          288 CHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGE  367 (461)
Q Consensus       288 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~  367 (461)
                      .......+..+++|+.|++++|.+..+.    +..+. .+++|++|+++.+...... ..  .+..+++|+.|++..+.-
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~~-~~--~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLS----PTAFN-SLSSLQVLNMSHNNFFSLD-TF--PYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECTTSCCSBCC-SG--GGTTCTTCCEEECTTSCC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcC----HHHhc-CCCCCCEEECCCCccCccC-hh--hccCcccCCEeECCCCCC
Confidence            0001223456889999999998765322    23344 6679999999776542211 11  356789999999987653


Q ss_pred             CCccccccCcCccccccceeEEEEE--eecCChhHHHHHHHH
Q 012562          368 DCDDWKISNKSIFCLTCHLKTVELI--HVAGDENELELVRFL  407 (461)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~Lk~v~i~--~~~g~~~e~~~~~~l  407 (461)
                      ..  .. ... .....++|+.+.+.  .+.+......|.+++
T Consensus       236 ~~--~~-~~~-~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          236 MT--SK-KQE-LQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             CB--CS-SSS-CCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred             cc--cC-HHH-HHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence            10  00 000 11122478888877  555666556666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.18  E-value=2.6e-12  Score=128.80  Aligned_cols=220  Identities=15%  Similarity=0.081  Sum_probs=100.1

Q ss_pred             cCCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      +++++|+|+.+. ...+|... ..+++|++|+|++|     .+..   ..+..+++|++|+|.++.+...  ....+.++
T Consensus        80 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l  151 (477)
T 2id5_A           80 FNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN-----KIVILLDYMFQDLYNLKSLEVGDNDLVYI--SHRAFSGL  151 (477)
T ss_dssp             TTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEEECCTTCCEE--CTTSSTTC
T ss_pred             ccCCEEECCCCc-CCccCcccccCCCCCCEEECCCC-----ccccCChhHccccccCCEEECCCCcccee--ChhhccCC
Confidence            356666664432 23444443 34667777777666     3322   2345566666666666544331  11234556


Q ss_pred             ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEE
Q 012562          197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAF  272 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~  272 (461)
                      +.|+.|+|.+|.+.+.....+ ..++|+.|.+..+.+...... ..-.+++|++|.++++......   .....+|+.++
T Consensus       152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence            666666666665433211111 125566666665553110000 0113456666666653222111   11123555555


Q ss_pred             EEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhc
Q 012562          273 IFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLN  352 (461)
Q Consensus       273 l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~  352 (461)
                      +.-+..  ...+       ...+..+++|+.|++++|.+..+.    ...+. .+++|+.|++..+...... +.  .+.
T Consensus       231 l~~n~l--~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~n~l~~~~-~~--~~~  293 (477)
T 2id5_A          231 ITHCNL--TAVP-------YLAVRHLVYLRFLNLSYNPISTIE----GSMLH-ELLRLQEIQLVGGQLAVVE-PY--AFR  293 (477)
T ss_dssp             EESSCC--CSCC-------HHHHTTCTTCCEEECCSSCCCEEC----TTSCT-TCTTCCEEECCSSCCSEEC-TT--TBT
T ss_pred             CcCCcc--cccC-------HHHhcCccccCeeECCCCcCCccC----hhhcc-ccccCCEEECCCCccceEC-HH--Hhc
Confidence            532211  0111       123445566666666665543221    11222 3445666665444322111 11  234


Q ss_pred             cCCCcceEEEEecc
Q 012562          353 CSPNLEALTIYFEG  366 (461)
Q Consensus       353 ~~p~L~~L~l~~~~  366 (461)
                      .+++|+.|++..+.
T Consensus       294 ~l~~L~~L~L~~N~  307 (477)
T 2id5_A          294 GLNYLRVLNVSGNQ  307 (477)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CcccCCEEECCCCc
Confidence            55566666555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.18  E-value=5.2e-13  Score=133.01  Aligned_cols=220  Identities=15%  Similarity=0.068  Sum_probs=118.7

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .++++|+|+.+....-.|..+..+++|++|+|++|     .+..   ..+..+++|++|+|.++.++.-  ....+.+++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~  147 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-----SIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEYLS  147 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCSBC--CTTTSSSCT
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-----ccCCcChhhccCcccCCEEECCCCcCCcc--ChhhhcccC
Confidence            46777777655434444555666788888888877     4433   2456677888888887766542  233456678


Q ss_pred             cccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEecCCCCce-eeeCCCCceEEEE
Q 012562          198 LLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFI  273 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l  273 (461)
                      +|+.|+|++|.+..+....+ ..++|+.|.+.++..  .+.+.  ..-.+++|++|.++++..... .+..+++|+.+++
T Consensus       148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L  225 (452)
T 3zyi_A          148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK--LEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM  225 (452)
T ss_dssp             TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred             CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC--ccccChhhccCCCCCCEEECCCCcccccccccccccccEEEC
Confidence            88888887765332111001 126677777776432  11111  001356777777776544332 2445566666666


Q ss_pred             EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562          274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC  353 (461)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~  353 (461)
                      +.+..  ...       ....+.++++|+.|.+.+|.+..+.    +..+. .+++|++|+++.+....-. ..  .+..
T Consensus       226 s~N~l--~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~~-~~--~~~~  288 (452)
T 3zyi_A          226 SGNHF--PEI-------RPGSFHGLSSLKKLWVMNSQVSLIE----RNAFD-GLASLVELNLAHNNLSSLP-HD--LFTP  288 (452)
T ss_dssp             TTSCC--SEE-------CGGGGTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCCC-TT--SSTT
T ss_pred             cCCcC--ccc-------CcccccCccCCCEEEeCCCcCceEC----HHHhc-CCCCCCEEECCCCcCCccC-hH--Hhcc
Confidence            32211  000       1123445667777777766554222    12233 4556777777655432111 11  3455


Q ss_pred             CCCcceEEEEecc
Q 012562          354 SPNLEALTIYFEG  366 (461)
Q Consensus       354 ~p~L~~L~l~~~~  366 (461)
                      +++|+.|++..++
T Consensus       289 l~~L~~L~L~~Np  301 (452)
T 3zyi_A          289 LRYLVELHLHHNP  301 (452)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             ccCCCEEEccCCC
Confidence            6677777766654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.17  E-value=5.8e-12  Score=129.79  Aligned_cols=105  Identities=20%  Similarity=0.221  Sum_probs=64.7

Q ss_pred             cccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceee--eCCCCcccCCCccEEEeceeccccccccCC------
Q 012562           94 SIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVT--ELPHCLVTCESLEALKLACRQLRMCVLKLP------  165 (461)
Q Consensus        94 ~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~--~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~------  165 (461)
                      .++.+.++.... .+..+.....  ..+++++|++.......  .++..+..|++|++|+|++|     .+.+.      
T Consensus       106 ~L~~L~L~~~~~-~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-----~i~~~~~~~l~  177 (594)
T 2p1m_B          106 WLEEIRLKRMVV-TDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-----DVDDVSGHWLS  177 (594)
T ss_dssp             TCCEEEEESCBC-CHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-----EEECCCGGGGG
T ss_pred             CCCeEEeeCcEE-cHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-----ccCCcchHHHH
Confidence            577777776542 2222221111  23578888885432111  13443446888999999888     44331      


Q ss_pred             -CccccCcccEEEeeeEE--EcChhhHHHHhhcCccccceEEeee
Q 012562          166 -FSVGFSRLKSLDLHNVE--FLDHNLLHKFVSSRRLLEKLILKSC  207 (461)
Q Consensus       166 -~~~~l~~L~~L~L~~~~--~~~~~~l~~l~~~cp~Le~L~L~~c  207 (461)
                       ....+++|++|+|.++.  +++. .+..++.+||+|+.|+|.+|
T Consensus       178 ~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          178 HFPDTYTSLVSLNISCLASEVSFS-ALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             GSCTTCCCCCEEECTTCCSCCCHH-HHHHHHHHCTTCCEEECCTT
T ss_pred             HHhhcCCcCcEEEecccCCcCCHH-HHHHHHHhCCCCcEEecCCC
Confidence             12256788888888775  4444 77777788888888888877

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.14  E-value=6e-13  Score=132.06  Aligned_cols=221  Identities=14%  Similarity=0.093  Sum_probs=122.7

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .+++.|+|..+....-.+..+..+++|++|+|++|     .+..   ..+..+++|++|+|.++.++.-  ....+.+++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-----~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~  136 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-----HIRTIEIGAFNGLANLNTLELFDNRLTTI--PNGAFVYLS  136 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-----CCCEECGGGGTTCSSCCEEECCSSCCSSC--CTTTSCSCS
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-----cCCccChhhccCCccCCEEECCCCcCCee--CHhHhhccc
Confidence            45777777555433333445556778888888877     4433   2455677888888887766542  223456777


Q ss_pred             cccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEecCCCCce-eeeCCCCceEEEE
Q 012562          198 LLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFI  273 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l  273 (461)
                      +|+.|+|++|.+..+....+ ..++|+.|.+.++..  .+.+.  ..-.+++|++|.++++....+ .+..+++|+.+++
T Consensus       137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L  214 (440)
T 3zyj_A          137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDL  214 (440)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEEC
T ss_pred             cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC--cceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEEC
Confidence            88888887765332111001 126777777776432  11111  011356777777777544332 2445667777777


Q ss_pred             EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562          274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC  353 (461)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~  353 (461)
                      ..+..  ...       ....+.++++|+.|.+.+|.+..+.    ...+. .+++|++|+++.+....-. ..  .+..
T Consensus       215 s~N~l--~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~~-~~--~~~~  277 (440)
T 3zyj_A          215 SGNHL--SAI-------RPGSFQGLMHLQKLWMIQSQIQVIE----RNAFD-NLQSLVEINLAHNNLTLLP-HD--LFTP  277 (440)
T ss_dssp             TTSCC--CEE-------CTTTTTTCTTCCEEECTTCCCCEEC----TTSST-TCTTCCEEECTTSCCCCCC-TT--TTSS
T ss_pred             CCCcc--Ccc-------ChhhhccCccCCEEECCCCceeEEC----hhhhc-CCCCCCEEECCCCCCCccC-hh--Hhcc
Confidence            32211  000       1123446777788887777655322    22233 4567777777665432211 11  4566


Q ss_pred             CCCcceEEEEeccC
Q 012562          354 SPNLEALTIYFEGE  367 (461)
Q Consensus       354 ~p~L~~L~l~~~~~  367 (461)
                      +++|+.|++..++-
T Consensus       278 l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          278 LHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTCCEEECCSSCE
T ss_pred             ccCCCEEEcCCCCc
Confidence            77788887777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.14  E-value=4.8e-12  Score=134.37  Aligned_cols=219  Identities=16%  Similarity=0.107  Sum_probs=113.0

Q ss_pred             cCCeEEEEEEcceeeeCCC--CcccCCCccEEEeceeccccccccC--C--CccccCcccEEEeeeEEEcChhhHH--HH
Q 012562          121 RNVQVFDLTVYGEVTELPH--CLVTCESLEALKLACRQLRMCVLKL--P--FSVGFSRLKSLDLHNVEFLDHNLLH--KF  192 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~l~~--~--~~~~l~~L~~L~L~~~~~~~~~~l~--~l  192 (461)
                      +++++|+|+.+.....+|.  .+..+++|++|+|++|     .+..  |  ....+++|++|+|.++.+++. ...  ..
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-----~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~  173 (768)
T 3rgz_A          100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN-----TLDFPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVL  173 (768)
T ss_dssp             TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSS-----EEECCSSCCSCCCCTTCSEEECCSSCCEEE-THHHHHH
T ss_pred             CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCC-----ccCCcCCHHHhccCCCCCEEECCCCccCCc-CChhhhh
Confidence            3566666655544445555  5666777777777766     4432  2  124567777777776666543 211  12


Q ss_pred             hhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eeeeCCCCce
Q 012562          193 VSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAFEDLDSLQ  269 (461)
Q Consensus       193 ~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~  269 (461)
                      +.+|+.|+.|++++|.+.+.... ...++|++|.+..|.+  .+.....-.+++|++|+++++....   ..+..+++|+
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  250 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNF--STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK  250 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCC--CSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred             hccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcC--CCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence            56677777777777654332211 1236677777776664  1212221245677777776654432   1245566666


Q ss_pred             EEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhh
Q 012562          270 NAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIIS  349 (461)
Q Consensus       270 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~  349 (461)
                      .+++..+... +..+.          ..+++|+.|++.+|.+..    ..+..+...+++|++|++..+...... +.  
T Consensus       251 ~L~Ls~n~l~-~~~~~----------~~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~--  312 (768)
T 3rgz_A          251 LLNISSNQFV-GPIPP----------LPLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGNHFYGAV-PP--  312 (768)
T ss_dssp             EEECCSSCCE-ESCCC----------CCCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSSEEEECC-CG--
T ss_pred             EEECCCCccc-CccCc----------cccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCCcCCCcc-ch--
Confidence            6666322110 00010          045666667666665431    111222212357777777554332111 11  


Q ss_pred             hhccCCCcceEEEEecc
Q 012562          350 LLNCSPNLEALTIYFEG  366 (461)
Q Consensus       350 lL~~~p~L~~L~l~~~~  366 (461)
                      .+..+++|+.|++..+.
T Consensus       313 ~~~~l~~L~~L~L~~n~  329 (768)
T 3rgz_A          313 FFGSCSLLESLALSSNN  329 (768)
T ss_dssp             GGGGCTTCCEEECCSSE
T ss_pred             HHhcCCCccEEECCCCc
Confidence            34667777777776653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.14  E-value=4e-13  Score=133.85  Aligned_cols=127  Identities=17%  Similarity=0.134  Sum_probs=84.1

Q ss_pred             cccEEEEEEeccCCc--hhHHHHHHHHHhcCCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCc
Q 012562           94 SIQRFRLYCLSYAND--YTVYRWVCAVARRNVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFS  167 (461)
Q Consensus        94 ~i~~l~l~~~~~~~~--~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~  167 (461)
                      .++.+.++.......  ..+.      ..+++++|++........++. .+..+++|++|+|++|     .+..   ..+
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~------~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~   99 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFS------RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-----QFLQLETGAF   99 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTS------SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-----TTCEECTTTT
T ss_pred             ccCEEEecCCccCcCChhHhc------cCccccEEECcCCcccceECcccccccccCCEEeCCCC-----ccCccChhhc
Confidence            577777765442211  1111      124788888866543334544 4556899999999998     4433   356


Q ss_pred             cccCcccEEEeeeEEEcChhhHH-HHhhcCccccceEEeeeecCCceEEE-E-ecCCcCeEEEeccCC
Q 012562          168 VGFSRLKSLDLHNVEFLDHNLLH-KFVSSRRLLEKLILKSCSFRDFKILD-I-SSTSLKSLTLDNFGG  232 (461)
Q Consensus       168 ~~l~~L~~L~L~~~~~~~~~~l~-~l~~~cp~Le~L~L~~c~~~~~~~~~-i-~~~~L~~L~l~~~~~  232 (461)
                      ..+++|++|+|.++.+++. ... ..+.++++|++|+|++|.+.+..... + ..++|++|.+..+.+
T Consensus       100 ~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLDGA-VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCCEEECTTSCCBTH-HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             cCcccCCEEeCCCCCCCcc-ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            7789999999999888763 222 23678899999999998765543322 2 247899999988764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.14  E-value=2.4e-11  Score=121.36  Aligned_cols=247  Identities=16%  Similarity=0.122  Sum_probs=127.9

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      +++++|++.... ...++. +..+++|++|+|++|     .+.. +.+..+++|++|+|.++.+.+-   . .+.+++.|
T Consensus        90 ~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-----~l~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~~l~~L  158 (466)
T 1o6v_A           90 TKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNN-----QITDIDPLKNLTNLNRLELSSNTISDI---S-ALSGLTSL  158 (466)
T ss_dssp             TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-----CCCCCGGGTTCTTCSEEEEEEEEECCC---G-GGTTCTTC
T ss_pred             ccCCEEECCCCc-cccChh-hcCCCCCCEEECCCC-----CCCCChHHcCCCCCCEEECCCCccCCC---h-hhccCCcc
Confidence            345555553332 112222 444556666666665     4333 2345556666666666655543   1 14556666


Q ss_pred             cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEee
Q 012562          200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDII  278 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~  278 (461)
                      +.|.+..+ ..+... -...++|+.|.+..+.+.+   +.....+++|++|.++++..... .+..+++|+.+++..+..
T Consensus       159 ~~L~l~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          159 QQLSFGNQ-VTDLKP-LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL  233 (466)
T ss_dssp             SEEEEEES-CCCCGG-GTTCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cEeecCCc-ccCchh-hccCCCCCEEECcCCcCCC---ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCc
Confidence            66666432 111111 0012566777776665321   11112456777777776443322 245566777777732211


Q ss_pred             cCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcc
Q 012562          279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLE  358 (461)
Q Consensus       279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~  358 (461)
                      .  .        + ..+..+++|+.|+++++.+.....      +. .+++|++|++..+......     -+..+++|+
T Consensus       234 ~--~--------~-~~l~~l~~L~~L~l~~n~l~~~~~------~~-~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~  290 (466)
T 1o6v_A          234 K--D--------I-GTLASLTNLTDLDLANNQISNLAP------LS-GLTKLTELKLGANQISNIS-----PLAGLTALT  290 (466)
T ss_dssp             C--C--------C-GGGGGCTTCSEEECCSSCCCCCGG------GT-TCTTCSEEECCSSCCCCCG-----GGTTCTTCS
T ss_pred             c--c--------c-hhhhcCCCCCEEECCCCccccchh------hh-cCCCCCEEECCCCccCccc-----cccCCCccC
Confidence            0  0        0 124466777777777776542211      23 5567788877665432211     145678888


Q ss_pred             eEEEEeccCCCccccccCcCccccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceEEEEc
Q 012562          359 ALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKLSFSW  421 (461)
Q Consensus       359 ~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~~i~~  421 (461)
                      .|++..+.-.       ..++...+++|+.+.+.+  +.+...        +.+.+.|+.+.+..
T Consensus       291 ~L~L~~n~l~-------~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          291 NLELNENQLE-------DISPISNLKNLTYLTLYFNNISDISP--------VSSLTKLQRLFFYN  340 (466)
T ss_dssp             EEECCSSCCS-------CCGGGGGCTTCSEEECCSSCCSCCGG--------GGGCTTCCEEECCS
T ss_pred             eEEcCCCccc-------CchhhcCCCCCCEEECcCCcCCCchh--------hccCccCCEeECCC
Confidence            8877765421       111223456788887773  333221        46889999988873

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.13  E-value=1.2e-12  Score=124.88  Aligned_cols=212  Identities=17%  Similarity=0.100  Sum_probs=119.5

Q ss_pred             HHHHHHHHhc-CCeEEEEEEcceeeeCCCCcccC--CCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcCh
Q 012562          112 YRWVCAVARR-NVQVFDLTVYGEVTELPHCLVTC--ESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDH  186 (461)
Q Consensus       112 ~~wi~~~~~~-~l~~L~l~~~~~~~~lp~~l~~~--~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~  186 (461)
                      .+|-..+..+ ..+.+++......   |..+...  ++++.|+++++     .+..  +....+++|++|+|.++.+++.
T Consensus        37 ~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-----~l~~~~~~~~~~~~L~~L~L~~~~l~~~  108 (336)
T 2ast_B           37 KRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-----FMDQPLAEHFSPFRVQHMDLSNSVIEVS  108 (336)
T ss_dssp             HHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-----EECSCCCSCCCCBCCCEEECTTCEECHH
T ss_pred             HHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCc-----cccccchhhccCCCCCEEEccCCCcCHH
Confidence            3566655433 3777877432211   2223344  79999999999     6555  4566799999999999998765


Q ss_pred             hhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecC-CCCceeee
Q 012562          187 NLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLAS-WAPDFAFE  263 (461)
Q Consensus       187 ~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~-~~~~~~~~  263 (461)
                       .+..++.+||+|++|+|++|.+.+.....+. .++|++|.+.+|.......+. ..-.+|+|++|.++++ ...     
T Consensus       109 -~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~-----  182 (336)
T 2ast_B          109 -TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT-----  182 (336)
T ss_dssp             -HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC-----
T ss_pred             -HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC-----
Confidence             6888899999999999999864321111111 366777777766210000111 1124566666666654 222     


Q ss_pred             CCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCC-CccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC-CC
Q 012562          264 DLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELC-EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM-AD  341 (461)
Q Consensus       264 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~  341 (461)
                                              ...+...+..++ +|+.|+++++.... .....+..+. .+++|++|++..+. .+
T Consensus       183 ------------------------~~~~~~~~~~l~~~L~~L~l~~~~~~~-~~~~l~~~~~-~~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          183 ------------------------EKHVQVAVAHVSETITQLNLSGYRKNL-QKSDLSTLVR-RCPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             ------------------------HHHHHHHHHHSCTTCCEEECCSCGGGS-CHHHHHHHHH-HCTTCSEEECTTCTTCC
T ss_pred             ------------------------hHHHHHHHHhcccCCCEEEeCCCcccC-CHHHHHHHHh-hCCCCCEEeCCCCCcCC
Confidence                                    222445555666 66666666653210 0000011111 34466666665554 23


Q ss_pred             cchhhHhhhhccCCCcceEEEEecc
Q 012562          342 WVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       342 ~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      ...+.   .+..+|+|+.|++..+.
T Consensus       237 ~~~~~---~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          237 NDCFQ---EFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             GGGGG---GGGGCTTCCEEECTTCT
T ss_pred             HHHHH---HHhCCCCCCEeeCCCCC
Confidence            33333   23455666666666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.13  E-value=7.6e-12  Score=125.44  Aligned_cols=219  Identities=17%  Similarity=0.088  Sum_probs=145.7

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      +++++|+|+.+......|..+..+++|++|+|+++     .+.. +  .+..+++|++|+|.++.+...  ....+.+++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~  128 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-----RLKLIPLGVFTGLSNLTKLDISENKIVIL--LDYMFQDLY  128 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-----CCCSCCTTSSTTCTTCCEEECTTSCCCEE--CTTTTTTCT
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-----cCCccCcccccCCCCCCEEECCCCccccC--ChhHccccc
Confidence            57888888655444445666777999999999998     5554 2  356789999999998877642  334467899


Q ss_pred             cccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEecCCCCce---eeeCCCCceEE
Q 012562          198 LLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLASWAPDF---AFEDLDSLQNA  271 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l  271 (461)
                      +|+.|++.+|.+.+...-.+ ..++|+.|.+..|.+   ..+.  ..-.+++|+.|.+.++.....   .+..+++|+.+
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  205 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL---TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL  205 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC---SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcC---cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence            99999999875432211111 137899999998874   2221  112578999999998654433   46678899999


Q ss_pred             EEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhh
Q 012562          272 FIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLL  351 (461)
Q Consensus       272 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL  351 (461)
                      ++.-+.. ....+        .......+|+.|+++++.+..+..    ..+. .+++|+.|+++.+...... ..  .+
T Consensus       206 ~l~~~~~-~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~----~~~~-~l~~L~~L~Ls~n~l~~~~-~~--~~  268 (477)
T 2id5_A          206 EISHWPY-LDTMT--------PNCLYGLNLTSLSITHCNLTAVPY----LAVR-HLVYLRFLNLSYNPISTIE-GS--ML  268 (477)
T ss_dssp             EEECCTT-CCEEC--------TTTTTTCCCSEEEEESSCCCSCCH----HHHT-TCTTCCEEECCSSCCCEEC-TT--SC
T ss_pred             eCCCCcc-ccccC--------cccccCccccEEECcCCcccccCH----HHhc-CccccCeeECCCCcCCccC-hh--hc
Confidence            9954311 00011        111123489999999997653321    1223 5679999999877543222 22  46


Q ss_pred             ccCCCcceEEEEecc
Q 012562          352 NCSPNLEALTIYFEG  366 (461)
Q Consensus       352 ~~~p~L~~L~l~~~~  366 (461)
                      ..+++|+.|++..+.
T Consensus       269 ~~l~~L~~L~L~~n~  283 (477)
T 2id5_A          269 HELLRLQEIQLVGGQ  283 (477)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cccccCCEEECCCCc
Confidence            789999999998765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.13  E-value=5.1e-12  Score=121.14  Aligned_cols=270  Identities=17%  Similarity=0.132  Sum_probs=167.0

Q ss_pred             CcccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccC
Q 012562           93 VSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFS  171 (461)
Q Consensus        93 ~~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~  171 (461)
                      +.++.+.++.........      ....+++++|+++... ...+| .+..+++|++|+|++|     .+.. +....++
T Consensus        66 ~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n-----~i~~~~~~~~l~  132 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNED-----NISDISPLANLT  132 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTS-----CCCCCGGGTTCT
T ss_pred             CCccEEEccCCccccchh------hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCC-----cccCchhhccCC
Confidence            358888887654322111      1223578999986543 22333 4667899999999999     6555 4467889


Q ss_pred             cccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEE
Q 012562          172 RLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFN  251 (461)
Q Consensus       172 ~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~  251 (461)
                      +|++|++.++.....  +.. +..++.|+.|++.+|...+... ....++|+.|.+..|.+.+...   ....++|++|.
T Consensus       133 ~L~~L~l~~n~~~~~--~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~  205 (347)
T 4fmz_A          133 KMYSLNLGANHNLSD--LSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFT  205 (347)
T ss_dssp             TCCEEECTTCTTCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEE
T ss_pred             ceeEEECCCCCCccc--ccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc---ccCCCccceee
Confidence            999999988744332  222 6788999999998887554333 1123788889888887522211   12567888888


Q ss_pred             EecCCCCcee-eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcc
Q 012562          252 FLASWAPDFA-FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYL  330 (461)
Q Consensus       252 l~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L  330 (461)
                      +.++...... +..+++|+.+++.-+..  ..        +.. +..+++++.|+++++.+..+      ..+. .+++|
T Consensus       206 l~~n~l~~~~~~~~~~~L~~L~l~~n~l--~~--------~~~-~~~l~~L~~L~l~~n~l~~~------~~~~-~l~~L  267 (347)
T 4fmz_A          206 AYVNQITDITPVANMTRLNSLKIGNNKI--TD--------LSP-LANLSQLTWLEIGTNQISDI------NAVK-DLTKL  267 (347)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCC--CC--------CGG-GTTCTTCCEEECCSSCCCCC------GGGT-TCTTC
T ss_pred             cccCCCCCCchhhcCCcCCEEEccCCcc--CC--------Ccc-hhcCCCCCEEECCCCccCCC------hhHh-cCCCc
Confidence            8875544332 56778888888843221  00        111 56788888888888865532      1233 56688


Q ss_pred             cEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEEe--ecCChhHHHHHHH
Q 012562          331 KSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELIH--VAGDENELELVRF  406 (461)
Q Consensus       331 ~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~~--~~g~~~e~~~~~~  406 (461)
                      ++|+++.+....-  +   .+..+|+|+.|++..+....      .. +.  ..+++|+.+.+.+  +.+...       
T Consensus       268 ~~L~l~~n~l~~~--~---~~~~l~~L~~L~L~~n~l~~------~~-~~~l~~l~~L~~L~L~~n~l~~~~~-------  328 (347)
T 4fmz_A          268 KMLNVGSNQISDI--S---VLNNLSQLNSLFLNNNQLGN------ED-MEVIGGLTNLTTLFLSQNHITDIRP-------  328 (347)
T ss_dssp             CEEECCSSCCCCC--G---GGGGCTTCSEEECCSSCCCG------GG-HHHHHTCTTCSEEECCSSSCCCCGG-------
T ss_pred             CEEEccCCccCCC--h---hhcCCCCCCEEECcCCcCCC------cC-hhHhhccccCCEEEccCCccccccC-------
Confidence            8888876644221  2   45678888888888765310      00 11  1346677777763  222211       


Q ss_pred             HHhcCcCcceEEEE
Q 012562          407 LLKNGHVLKKLSFS  420 (461)
Q Consensus       407 ll~~a~~Le~~~i~  420 (461)
                       +.+.+.|+.+.+.
T Consensus       329 -~~~l~~L~~L~l~  341 (347)
T 4fmz_A          329 -LASLSKMDSADFA  341 (347)
T ss_dssp             -GGGCTTCSEESSS
T ss_pred             -hhhhhccceeehh
Confidence             5677778877665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.12  E-value=5.1e-13  Score=126.30  Aligned_cols=218  Identities=18%  Similarity=0.145  Sum_probs=148.1

Q ss_pred             cCCeEEEEEEcceee--eCCCCcccCCCccEEEece-eccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhh
Q 012562          121 RNVQVFDLTVYGEVT--ELPHCLVTCESLEALKLAC-RQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVS  194 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~--~lp~~l~~~~~L~~L~L~~-~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~  194 (461)
                      .++++|++.......  .+|..+..+++|++|+|++ +     .+..  | .+..+++|++|+|.++.+++  .+...+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-----~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~  122 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-----NLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-----TEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-----cccccCChhHhcCCCCCEEECcCCeeCC--cCCHHHh
Confidence            468889987665444  7899999999999999995 6     4443  3 56789999999999998874  3444578


Q ss_pred             cCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEE-ecC-CeeeEEEecCCCC---ceeeeCCCCc
Q 012562          195 SRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKI-ACP-NLVSFNFLASWAP---DFAFEDLDSL  268 (461)
Q Consensus       195 ~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~-~~p-~L~~L~l~~~~~~---~~~~~~~~~L  268 (461)
                      ++++|++|++++|.+.+.....+. .++|++|.+..|.+  .+.+...+ ..+ +|++|.++++...   ...+..++ |
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L  199 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI--SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L  199 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC--EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred             CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc--cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence            899999999999875432211122 37899999998874  11111111 344 8999999885432   22244454 8


Q ss_pred             eEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHh
Q 012562          269 QNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSII  348 (461)
Q Consensus       269 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~  348 (461)
                      +.+++..+...         ......+..+++|+.|++++|.+....     ..+. .+++|++|+++.+...... +. 
T Consensus       200 ~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~-~l~~L~~L~Ls~N~l~~~~-p~-  262 (313)
T 1ogq_A          200 AFVDLSRNMLE---------GDASVLFGSDKNTQKIHLAKNSLAFDL-----GKVG-LSKNLNGLDLRNNRIYGTL-PQ-  262 (313)
T ss_dssp             SEEECCSSEEE---------ECCGGGCCTTSCCSEEECCSSEECCBG-----GGCC-CCTTCCEEECCSSCCEECC-CG-
T ss_pred             cEEECcCCccc---------CcCCHHHhcCCCCCEEECCCCceeeec-----Cccc-ccCCCCEEECcCCcccCcC-Ch-
Confidence            88888432220         012234557899999999998765211     1233 5679999999877653332 22 


Q ss_pred             hhhccCCCcceEEEEecc
Q 012562          349 SLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       349 ~lL~~~p~L~~L~l~~~~  366 (461)
                       .+..+++|+.|++..+.
T Consensus       263 -~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          263 -GLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             -GGGGCTTCCEEECCSSE
T ss_pred             -HHhcCcCCCEEECcCCc
Confidence             46788999999998765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.12  E-value=5.1e-12  Score=125.85  Aligned_cols=259  Identities=16%  Similarity=0.102  Sum_probs=164.4

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-----CCccccCcccEEEeeeEEEcChhhHHHHhhc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSS  195 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~  195 (461)
                      +++++|+++.+......|..+..+++|++|+|++|     .+..     ..+..+++|++|+|.++.+++. ....++.+
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~  152 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-----NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI-QPASFFLN  152 (455)
T ss_dssp             TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-----CCBTHHHHSSTTTTCTTCCEEECCSSBCCSC-CCCGGGGG
T ss_pred             ccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-----CCCccccCcccccCcccCCEEECCCCccCcc-CcccccCC
Confidence            57899998666544455777778999999999999     5543     2366789999999999887764 23344778


Q ss_pred             CccccceEEeeeecCCceE-------------EEE----------------------ecCCcCeEEEeccCCCC------
Q 012562          196 RRLLEKLILKSCSFRDFKI-------------LDI----------------------SSTSLKSLTLDNFGGDE------  234 (461)
Q Consensus       196 cp~Le~L~L~~c~~~~~~~-------------~~i----------------------~~~~L~~L~l~~~~~~~------  234 (461)
                      ++.|++|++++|.+.+...             +.+                      ..++|++|++.+|.+.+      
T Consensus       153 l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  232 (455)
T 3v47_A          153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF  232 (455)
T ss_dssp             CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred             CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh
Confidence            8999999998886433211             000                      01457777777665311      


Q ss_pred             -----CCCeE-EEE--------------------------ecCCeeeEEEecCCCCce---eeeCCCCceEEEEEEEeec
Q 012562          235 -----SGNYK-VKI--------------------------ACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIFFDIID  279 (461)
Q Consensus       235 -----~~~~~-~~~--------------------------~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~  279 (461)
                           ...+. +.+                          ..++|++|+++++.....   .+..+++|+.+++..+.. 
T Consensus       233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-  311 (455)
T 3v47_A          233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-  311 (455)
T ss_dssp             HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-
T ss_pred             hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-
Confidence                 01111 111                          125788888888654433   356788999999943221 


Q ss_pred             CCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcce
Q 012562          280 RDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEA  359 (461)
Q Consensus       280 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~  359 (461)
                       ...       ....+..+++|+.|++++|.+..+.    +..+. .+++|++|+++.+........   .+..+|+|+.
T Consensus       312 -~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~  375 (455)
T 3v47_A          312 -NKI-------DDNAFWGLTHLLKLNLSQNFLGSID----SRMFE-NLDKLEVLDLSYNHIRALGDQ---SFLGLPNLKE  375 (455)
T ss_dssp             -CEE-------CTTTTTTCTTCCEEECCSSCCCEEC----GGGGT-TCTTCCEEECCSSCCCEECTT---TTTTCTTCCE
T ss_pred             -ccc-------ChhHhcCcccCCEEECCCCccCCcC----hhHhc-CcccCCEEECCCCcccccChh---hccccccccE
Confidence             000       1123457899999999999765322    23334 567999999987755332222   4578999999


Q ss_pred             EEEEeccCCCccccccCcCcc--ccccceeEEEEE--eecCChhHHHHHHHHHh
Q 012562          360 LTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELI--HVAGDENELELVRFLLK  409 (461)
Q Consensus       360 L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~--~~~g~~~e~~~~~~ll~  409 (461)
                      |++..+.-.       ..++.  ..+++|+.+.+.  .+.+....+..+...++
T Consensus       376 L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~  422 (455)
T 3v47_A          376 LALDTNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  422 (455)
T ss_dssp             EECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             EECCCCccc-------cCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence            999886531       12111  235788888888  55666665665544444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.12  E-value=3.1e-13  Score=139.74  Aligned_cols=210  Identities=17%  Similarity=0.169  Sum_probs=90.8

Q ss_pred             eCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc
Q 012562          136 ELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF  212 (461)
Q Consensus       136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~  212 (461)
                      .+|..+..+++|++|++++|     .+..   ..+..+++|++|++.++.+... .....+.++++|++|++++|.+.+.
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~  365 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSAN-----KFENLCQISASNFPSLTHLSIKGNTKRLE-LGTGCLENLENLRELDLSHDDIETS  365 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTC-----CCSBGGGGCGGGCTTCSEEECCSCSSCCB-CCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCChhhcccccCCEEECccC-----CcCcCchhhhhccCcCCEEECCCCCcccc-cchhhhhccCcCCEEECCCCccccc
Confidence            44444444555555555555     2222   1334455555555555433321 1112234455555555555432221


Q ss_pred             eE--EEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc----eeeeCCCCceEEEEEEEeecCCCCch
Q 012562          213 KI--LDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD----FAFEDLDSLQNAFIFFDIIDRDERDN  285 (461)
Q Consensus       213 ~~--~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~  285 (461)
                      ..  ..+ ..++|+.|.+..|.+.+... ...-.+++|++|.++++....    ..+..+++|+.+++..+...      
T Consensus       366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------  438 (606)
T 3t6q_A          366 DCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD------  438 (606)
T ss_dssp             EESTTTTTTCTTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB------
T ss_pred             cCcchhcccCCCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC------
Confidence            10  000 12455555555544200000 000134556666665532211    11345556666666322110      


Q ss_pred             hhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562          286 ESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       286 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~  365 (461)
                         ......+..+++|+.|++++|.+..... .....+. .+++|+.|+++.+...... +.  .+..+++|+.|++..+
T Consensus       439 ---~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~-~l~~L~~L~Ls~n~l~~~~-~~--~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          439 ---ISSEQLFDGLPALQHLNLQGNHFPKGNI-QKTNSLQ-TLGRLEILVLSFCDLSSID-QH--AFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             ---TTCTTTTTTCTTCCEEECTTCBCGGGEE-CSSCGGG-GCTTCCEEECTTSCCCEEC-TT--TTTTCTTCCEEECCSS
T ss_pred             ---CcCHHHHhCCCCCCEEECCCCCCCcccc-ccchhhc-cCCCccEEECCCCccCccC-hh--hhccccCCCEEECCCC
Confidence               0011223456667777777665432110 0012233 4556777776555432221 11  3456677777777665


Q ss_pred             c
Q 012562          366 G  366 (461)
Q Consensus       366 ~  366 (461)
                      .
T Consensus       511 ~  511 (606)
T 3t6q_A          511 R  511 (606)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.11  E-value=1.9e-11  Score=122.08  Aligned_cols=248  Identities=19%  Similarity=0.178  Sum_probs=153.3

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      +++++|+++... ...+|. +..+++|++|++++|     .+.. +.+..+++|++|+|.++.+++- .  . +.++++|
T Consensus        68 ~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n-----~l~~~~~~~~l~~L~~L~L~~n~l~~~-~--~-~~~l~~L  136 (466)
T 1o6v_A           68 NNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNN-----QIADITPLANLTNLTGLTLFNNQITDI-D--P-LKNLTNL  136 (466)
T ss_dssp             TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCCCC-G--G-GTTCTTC
T ss_pred             cCCCEEECCCCc-cCCchh-hhccccCCEEECCCC-----ccccChhhcCCCCCCEEECCCCCCCCC-h--H-HcCCCCC
Confidence            577888875543 223343 566788888888888     5544 3366788888888888777654 1  1 6778888


Q ss_pred             cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEee
Q 012562          200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDII  278 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~  278 (461)
                      +.|++++|.+.+... --..++|+.|.+.++.   .+ ....-.+++|++|+++++..... .+..+++|+.+++..+..
T Consensus       137 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~---~~-~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          137 NRLELSSNTISDISA-LSGLTSLQQLSFGNQV---TD-LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             SEEEEEEEEECCCGG-GTTCTTCSEEEEEESC---CC-CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred             CEEECCCCccCCChh-hccCCcccEeecCCcc---cC-chhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcc
Confidence            888888886554321 0113678888876332   11 11112567888888887554333 255678888888843221


Q ss_pred             cCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcc
Q 012562          279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLE  358 (461)
Q Consensus       279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~  358 (461)
                        ..        ... +..+++|+.|+++++.+..+      ..+. .+++|++|++..+......     -+..+++|+
T Consensus       212 --~~--------~~~-~~~l~~L~~L~l~~n~l~~~------~~l~-~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~  268 (466)
T 1o6v_A          212 --SD--------ITP-LGILTNLDELSLNGNQLKDI------GTLA-SLTNLTDLDLANNQISNLA-----PLSGLTKLT  268 (466)
T ss_dssp             --CC--------CGG-GGGCTTCCEEECCSSCCCCC------GGGG-GCTTCSEEECCSSCCCCCG-----GGTTCTTCS
T ss_pred             --cc--------ccc-ccccCCCCEEECCCCCcccc------hhhh-cCCCCCEEECCCCccccch-----hhhcCCCCC
Confidence              00        111 45678888888888765532      2233 5668888888766542221     146788999


Q ss_pred             eEEEEeccCCCccccccCcCccccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceEEEEcc
Q 012562          359 ALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKLSFSWM  422 (461)
Q Consensus       359 ~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~~i~~~  422 (461)
                      .|++..+...       ..++...+++|+.+.+.+  +.+...        +.+.+.|+.+.+...
T Consensus       269 ~L~l~~n~l~-------~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          269 ELKLGANQIS-------NISPLAGLTALTNLELNENQLEDISP--------ISNLKNLTYLTLYFN  319 (466)
T ss_dssp             EEECCSSCCC-------CCGGGTTCTTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSS
T ss_pred             EEECCCCccC-------ccccccCCCccCeEEcCCCcccCchh--------hcCCCCCCEEECcCC
Confidence            9988876531       111223457788888773  222221        578999999998843

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.10  E-value=1e-12  Score=128.11  Aligned_cols=234  Identities=15%  Similarity=0.067  Sum_probs=113.2

Q ss_pred             cCCeEEEEEEccee----eeCCCCcccCCCccEEEeceeccccccccC-----C--------CccccCcccEEEeeeEEE
Q 012562          121 RNVQVFDLTVYGEV----TELPHCLVTCESLEALKLACRQLRMCVLKL-----P--------FSVGFSRLKSLDLHNVEF  183 (461)
Q Consensus       121 ~~l~~L~l~~~~~~----~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-----~--------~~~~l~~L~~L~L~~~~~  183 (461)
                      +++++|+|+.+...    ..++..+..+++|++|+|++|     .+..     |        .+..+++|++|+|+++.+
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-----~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-----FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-----CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-----ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            46777777433211    123334456778888888776     2221     1        124567888888888877


Q ss_pred             cCh--hhHHHHhhcCccccceEEeeeecCCceEEEEe-----c---------CCcCeEEEeccCCCCCCCeE-E--EE-e
Q 012562          184 LDH--NLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-----S---------TSLKSLTLDNFGGDESGNYK-V--KI-A  243 (461)
Q Consensus       184 ~~~--~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-----~---------~~L~~L~l~~~~~~~~~~~~-~--~~-~  243 (461)
                      ++.  ..+...+..+++|+.|+|++|.+.+.....+.     .         ++|++|.+.+|.+.+ ..+. +  .+ .
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~  185 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKEWAKTFQS  185 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHHHHHHHHHHh
Confidence            664  12444566788888888888753211111111     1         577777777666411 1111 0  11 4


Q ss_pred             cCCeeeEEEecCCCCce--------eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhc
Q 012562          244 CPNLVSFNFLASWAPDF--------AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHF  315 (461)
Q Consensus       244 ~p~L~~L~l~~~~~~~~--------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~  315 (461)
                      +++|++|.++++.....        .+..+++|+.+++..+..     .......+...+..+++|+.|+|++|.+....
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-----~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-----HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC-----CcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            56777777776543311        233455555555532211     00001223444555666666666665543221


Q ss_pred             cccccccCC-cccCcccEEEEEEeCCCcc---hhhHhhhhccCCCcceEEEEecc
Q 012562          316 VLEERGFIP-NSFNYLKSLVLSVSMADWV---VPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       316 ~~~~~~~l~-~~~~~L~~L~l~~~~~~~~---~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      ....+..+. ..+++|++|+++.|.....   .++. .+..++|+|+.|++..+.
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCc
Confidence            111111111 0144566666655543221   1111 022445666666655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.10  E-value=1.1e-11  Score=117.83  Aligned_cols=223  Identities=17%  Similarity=0.098  Sum_probs=137.9

Q ss_pred             CCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecC
Q 012562          144 CESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SST  220 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~  220 (461)
                      ..+++.|+|+++     .+..  +....+++|++|+|.++.+..   +...+.++++|+.|+|++|.+..+.. .+ ..+
T Consensus        80 ~~~l~~L~L~~n-----~l~~lp~~l~~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~  150 (328)
T 4fcg_A           80 QPGRVALELRSV-----PLPQFPDQAFRLSHLQHMTIDAAGLME---LPDTMQQFAGLETLTLARNPLRALPA-SIASLN  150 (328)
T ss_dssp             STTCCEEEEESS-----CCSSCCSCGGGGTTCSEEEEESSCCCC---CCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCT
T ss_pred             ccceeEEEccCC-----CchhcChhhhhCCCCCEEECCCCCccc---hhHHHhccCCCCEEECCCCccccCcH-HHhcCc
Confidence            468999999999     5555  356779999999999998762   34446789999999999986543211 11 136


Q ss_pred             CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCC
Q 012562          221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCE  300 (461)
Q Consensus       221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~  300 (461)
                      +|++|.+.+|..  .+.+..     .+....+.+      .+..+++|+.+++..+...  ..        ...+..+++
T Consensus       151 ~L~~L~L~~n~~--~~~~p~-----~~~~~~~~~------~~~~l~~L~~L~L~~n~l~--~l--------p~~l~~l~~  207 (328)
T 4fcg_A          151 RLRELSIRACPE--LTELPE-----PLASTDASG------EHQGLVNLQSLRLEWTGIR--SL--------PASIANLQN  207 (328)
T ss_dssp             TCCEEEEEEETT--CCCCCS-----CSEEEC-CC------CEEESTTCCEEEEEEECCC--CC--------CGGGGGCTT
T ss_pred             CCCEEECCCCCC--ccccCh-----hHhhccchh------hhccCCCCCEEECcCCCcC--cc--------hHhhcCCCC
Confidence            788888887653  111110     011111111      1334666666666544321  11        123567899


Q ss_pred             ccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc
Q 012562          301 VKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF  380 (461)
Q Consensus       301 l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~  380 (461)
                      |+.|++++|.+..+.     ..+. .+++|++|+++.|........   .+..+++|+.|++..+...      ... |.
T Consensus       208 L~~L~L~~N~l~~l~-----~~l~-~l~~L~~L~Ls~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~------~~~-p~  271 (328)
T 4fcg_A          208 LKSLKIRNSPLSALG-----PAIH-HLPKLEELDLRGCTALRNYPP---IFGGRAPLKRLILKDCSNL------LTL-PL  271 (328)
T ss_dssp             CCEEEEESSCCCCCC-----GGGG-GCTTCCEEECTTCTTCCBCCC---CTTCCCCCCEEECTTCTTC------CBC-CT
T ss_pred             CCEEEccCCCCCcCc-----hhhc-cCCCCCEEECcCCcchhhhHH---HhcCCCCCCEEECCCCCch------hhc-ch
Confidence            999999999866332     2233 667999999987654333222   4678999999999886531      112 22


Q ss_pred             --ccccceeEEEEEee--cCChhHHHHHHHHHhcCcCcceEEEE
Q 012562          381 --CLTCHLKTVELIHV--AGDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       381 --~~~~~Lk~v~i~~~--~g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                        ..+++|+.+.+.+-  .|...      --+.+.+.|+.+.+.
T Consensus       272 ~~~~l~~L~~L~L~~n~~~~~iP------~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRGCVNLSRLP------SLIAQLPANCIILVP  309 (328)
T ss_dssp             TGGGCTTCCEEECTTCTTCCCCC------GGGGGSCTTCEEECC
T ss_pred             hhhcCCCCCEEeCCCCCchhhcc------HHHhhccCceEEeCC
Confidence              23467777777632  22211      124678888888766

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.08  E-value=1.1e-10  Score=119.13  Aligned_cols=226  Identities=15%  Similarity=0.146  Sum_probs=148.1

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      +.+++|+++........|..+..+++|++|+|++|     .+..   ..+..+++|++|+|+++.+.+  .....+.+++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-----RINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLS   98 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCT
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCC-----CcCccChhhccccccCCEEECCCCccCc--cCHHHhccCC
Confidence            47899999776544445666778999999999999     5444   357789999999999998876  3455578999


Q ss_pred             cccceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCeE-EE-EecCCeeeEEEecCCCCce---eeeCCCCceE
Q 012562          198 LLEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNYK-VK-IACPNLVSFNFLASWAPDF---AFEDLDSLQN  270 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~~-~~-~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~  270 (461)
                      +|++|++++|.+.+.... .+ ..++|++|.+..+..  .+.+. .. -.+++|++|.++++.....   .+..+++|++
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  176 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH  176 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCcc--ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence            999999999876543211 12 247899999998863  11111 01 2478999999998655433   3556778888


Q ss_pred             EEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcch-hhHhh
Q 012562          271 AFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVV-PSIIS  349 (461)
Q Consensus       271 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-l~~~~  349 (461)
                      +++..+..         ......++..+++++.|+++++.+......  +..+...+++|+.|++..+...... .....
T Consensus       177 L~l~~n~~---------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  245 (549)
T 2z81_A          177 LTLHLSES---------AFLLEIFADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESFNELLK  245 (549)
T ss_dssp             EEEECSBS---------TTHHHHHHHSTTTBSEEEEESCBCTTCCCC--CCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred             EecccCcc---------cccchhhHhhcccccEEEccCCcccccccc--ccchhhhhhcccceeccccccchhHHHHHHH
Confidence            88754322         111223456789999999999876543211  1111114568888888665432211 11222


Q ss_pred             hhccCCCcceEEEEecc
Q 012562          350 LLNCSPNLEALTIYFEG  366 (461)
Q Consensus       350 lL~~~p~L~~L~l~~~~  366 (461)
                      .+..+++|+.|++..+.
T Consensus       246 ~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          246 LLRYILELSEVEFDDCT  262 (549)
T ss_dssp             GGGGCTTCCEEEEESCE
T ss_pred             Hhhhhcccccccccccc
Confidence            45667777777776653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.07  E-value=7.9e-12  Score=128.90  Aligned_cols=81  Identities=14%  Similarity=0.174  Sum_probs=35.4

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      ++++.|++..+......|..+..+++|++|+|++|     .+..  + .+..+++|++|+|.++.++.  ....++.+++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~  147 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-----AIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTP  147 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCT
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-----cCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCC
Confidence            34555555333222222223444555555555555     3322  1 23445555555555554432  1122234455


Q ss_pred             cccceEEeeee
Q 012562          198 LLEKLILKSCS  208 (461)
Q Consensus       198 ~Le~L~L~~c~  208 (461)
                      +|+.|+|++|.
T Consensus       148 ~L~~L~Ls~N~  158 (597)
T 3oja_B          148 KLTTLSMSNNN  158 (597)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEeeCCc
Confidence            55555555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.05  E-value=5.7e-11  Score=121.73  Aligned_cols=215  Identities=18%  Similarity=0.087  Sum_probs=88.7

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCccccc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEK  201 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~  201 (461)
                      ++++|++.... ...+|..+..+ +|++|++++|     .+..-....+++|++|++.++.....  +.  ...+|.|+.
T Consensus       283 ~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n-----~~~~l~~~~l~~L~~L~l~~n~~~~~--~~--~~~~~~L~~  351 (570)
T 2z63_A          283 NVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNC-----KFGQFPTLKLKSLKRLTFTSNKGGNA--FS--EVDLPSLEF  351 (570)
T ss_dssp             TCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESC-----BCSSCCBCBCSSCCEEEEESCBSCCB--CC--CCBCTTCCE
T ss_pred             cccEEEecCcc-chhhhhhhccC-CccEEeeccC-----cccccCcccccccCEEeCcCCccccc--cc--cccCCCCCE
Confidence            44444443322 12344444444 5555555555     33221113455555555555443332  11  134555555


Q ss_pred             eEEeeeecCCceEEE--E-ecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCc----eeeeCCCCceEEEE
Q 012562          202 LILKSCSFRDFKILD--I-SSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPD----FAFEDLDSLQNAFI  273 (461)
Q Consensus       202 L~L~~c~~~~~~~~~--i-~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l~l  273 (461)
                      |++++|.+.+.....  + ..++|++|.+..|.+   .... ....+++|++|.+.++....    ..+..+++|+.+++
T Consensus       352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE---EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             EeCcCCccCccccccccccccCccCEEECCCCcc---ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            555554322211100  0 125555555555442   1111 11245556666555532111    12344555555555


Q ss_pred             EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562          274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC  353 (461)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~  353 (461)
                      ..+..         .......+.++++|+.|++.+|.+..   ...+..+. .+++|+.|+++.+...... +.  .+..
T Consensus       429 ~~n~l---------~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~-~l~~L~~L~l~~n~l~~~~-~~--~~~~  492 (570)
T 2z63_A          429 SHTHT---------RVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFT-ELRNLTFLDLSQCQLEQLS-PT--AFNS  492 (570)
T ss_dssp             TTSCC---------EECCTTTTTTCTTCCEEECTTCEEGG---GEECSCCT-TCTTCCEEECTTSCCCEEC-TT--TTTT
T ss_pred             cCCcc---------cccchhhhhcCCcCcEEECcCCcCcc---ccchhhhh-cccCCCEEECCCCccccCC-hh--hhhc
Confidence            21110         00011223345566666666554321   00112222 4446666666444332111 11  3345


Q ss_pred             CCCcceEEEEecc
Q 012562          354 SPNLEALTIYFEG  366 (461)
Q Consensus       354 ~p~L~~L~l~~~~  366 (461)
                      +++|+.|++..+.
T Consensus       493 l~~L~~L~l~~n~  505 (570)
T 2z63_A          493 LSSLQVLNMASNQ  505 (570)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             ccCCCEEeCCCCc
Confidence            5666666665543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.04  E-value=5.6e-12  Score=133.87  Aligned_cols=228  Identities=19%  Similarity=0.112  Sum_probs=145.5

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .++++|++..+.....+|..+..+++|++|+|++|     .+..  | .+..+++|++|+|.++.+.+  .+...+..++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-----~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~  466 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSSLGSLSKLRDLKLWLNMLEG--EIPQELMYVK  466 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-----EEESCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCT
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCC-----cccCcccHHHhcCCCCCEEECCCCcccC--cCCHHHcCCC
Confidence            46888888766656678888888999999999998     5543  3 46678889999988887765  3444567788


Q ss_pred             cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCC---ceeeeCCCCceEEE
Q 012562          198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAP---DFAFEDLDSLQNAF  272 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~l~  272 (461)
                      .|+.|++++|.+.+.....+. .++|+.|.+.+|.+  .+.+.-. -.+++|++|+++++...   +..+..+++|+.++
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc--CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            888888888875543222222 37788888888775  2222211 25678888888875443   22355677788877


Q ss_pred             EEEEeecCCCCchhh---------------------------------------------H-----------------HH
Q 012562          273 IFFDIIDRDERDNES---------------------------------------------C-----------------HI  290 (461)
Q Consensus       273 l~~~~~~~~~~~~~~---------------------------------------------~-----------------~~  290 (461)
                      +..+... +..|...                                             .                 ..
T Consensus       545 Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~  623 (768)
T 3rgz_A          545 LNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH  623 (768)
T ss_dssp             CCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred             CCCCccC-CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence            7322110 0000000                                             0                 00


Q ss_pred             HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      ....+..+++++.|++++|.+..    ..+..+. .+++|+.|+++.+........   -+..+++|+.|++..+.
T Consensus       624 ~~~~~~~l~~L~~LdLs~N~l~g----~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~---~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          624 TSPTFDNNGSMMFLDMSYNMLSG----YIPKEIG-SMPYLFILNLGHNDISGSIPD---EVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             CCCSCSSSBCCCEEECCSSCCBS----CCCGGGG-GCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSC
T ss_pred             CchhhhccccccEEECcCCcccc----cCCHHHh-ccccCCEEeCcCCccCCCCCh---HHhCCCCCCEEECCCCc
Confidence            00113346789999999987652    1233344 667889999887765444433   45778899999988765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.04  E-value=5.2e-10  Score=115.12  Aligned_cols=261  Identities=12%  Similarity=-0.021  Sum_probs=155.2

Q ss_pred             CcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC-CceEEE
Q 012562          140 CLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR-DFKILD  216 (461)
Q Consensus       140 ~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~-~~~~~~  216 (461)
                      .+..+++|+.|.+..+     .... + ....+++|++|+|.++.+++. .+..++.+||+|+.|++..+... ++..+.
T Consensus       265 ~l~~~~~L~~L~l~~~-----~~~~l~~~~~~~~~L~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~  338 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYM-----GPNEMPILFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEVLETRNVIGDRGLEVLA  338 (592)
T ss_dssp             CCCCCTTCCEEEETTC-----CTTTGGGGGGGGGGCCEEEETTCCCCHH-HHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred             HhhccccccccCcccc-----chhHHHHHHhhcCCCcEEecCCCcCCHH-HHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence            3344556666655544     2222 2 344688999999999887666 77777889999999999854211 111111


Q ss_pred             EecCCcCeEEEec----------cCCCCCCCeE-EEEecCCeeeEEEecCCCCcee---ee-CCCCceEEEEEEEe--ec
Q 012562          217 ISSTSLKSLTLDN----------FGGDESGNYK-VKIACPNLVSFNFLASWAPDFA---FE-DLDSLQNAFIFFDI--ID  279 (461)
Q Consensus       217 i~~~~L~~L~l~~----------~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~---~~-~~~~L~~l~l~~~~--~~  279 (461)
                      -.+++|++|.+.+          |.......+. +.-.+|+|++|.+..+......   +. .+++|+++++....  ..
T Consensus       339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred             HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence            1257899999994          3321111111 1124799999999664443322   22 38899999995321  01


Q ss_pred             CCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcce
Q 012562          280 RDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEA  359 (461)
Q Consensus       280 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~  359 (461)
                      ..+.|.  ...+..++.++++|+.|+++.+.-. +.... +..+...+++|++|+++.+..+...+..  +++.||+|+.
T Consensus       419 l~~~p~--~~~~~~~~~~~~~L~~L~L~~~~~~-l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~~~~~L~~  492 (592)
T 3ogk_B          419 ITDLPL--DNGVRSLLIGCKKLRRFAFYLRQGG-LTDLG-LSYIGQYSPNVRWMLLGYVGESDEGLME--FSRGCPNLQK  492 (592)
T ss_dssp             CSSCCC--HHHHHHHHHHCTTCCEEEEECCGGG-CCHHH-HHHHHHSCTTCCEEEECSCCSSHHHHHH--HHTCCTTCCE
T ss_pred             ccCchH--HHHHHHHHHhCCCCCEEEEecCCCC-ccHHH-HHHHHHhCccceEeeccCCCCCHHHHHH--HHhcCcccCe
Confidence            122222  3457778889999999999653211 11110 1222214668999999877655555555  7899999999


Q ss_pred             EEEEeccCCCccccccCcC-ccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562          360 LTIYFEGEDCDDWKISNKS-IFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       360 L~l~~~~~~~~~~~~~~~~-~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      |+|..+...    .. ..+ ....+++|+.+.+.+..-....   ++.+.+..+.|....+.
T Consensus       493 L~l~~n~l~----~~-~~~~~~~~l~~L~~L~ls~n~it~~~---~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          493 LEMRGCCFS----ER-AIAAAVTKLPSLRYLWVQGYRASMTG---QDLMQMARPYWNIELIP  546 (592)
T ss_dssp             EEEESCCCB----HH-HHHHHHHHCSSCCEEEEESCBCCTTC---TTGGGGCCTTEEEEEEC
T ss_pred             eeccCCCCc----HH-HHHHHHHhcCccCeeECcCCcCCHHH---HHHHHHhCCCcEEEEec
Confidence            999998621    00 010 0113478999988855432221   23344566766665555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.04  E-value=7.9e-12  Score=129.19  Aligned_cols=138  Identities=21%  Similarity=0.105  Sum_probs=73.1

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .+++.|++.... ...+| .+..+++|++|++++|     .+.. |.. .+++|++|++.++.....  +  -+..+|.|
T Consensus       285 ~~L~~L~l~~~~-~~~l~-~l~~~~~L~~L~l~~n-----~l~~lp~~-~l~~L~~L~l~~n~~~~~--~--~~~~l~~L  352 (606)
T 3vq2_A          285 ANVSAMSLAGVS-IKYLE-DVPKHFKWQSLSIIRC-----QLKQFPTL-DLPFLKSLTLTMNKGSIS--F--KKVALPSL  352 (606)
T ss_dssp             TTCSEEEEESCC-CCCCC-CCCTTCCCSEEEEESC-----CCSSCCCC-CCSSCCEEEEESCSSCEE--C--CCCCCTTC
T ss_pred             CCCCEEEecCcc-chhhh-hccccccCCEEEcccc-----cCcccccC-CCCccceeeccCCcCccc--h--hhccCCCC
Confidence            578888886543 23455 5666778888888888     5433 444 677777777776633222  1  23456777


Q ss_pred             cceEEeeeecCCceEEE---EecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCCc----eeeeCCCCceEE
Q 012562          200 EKLILKSCSFRDFKILD---ISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAPD----FAFEDLDSLQNA  271 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~---i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l  271 (461)
                      +.|++++|.+.+.....   ...++|+.|.+..|.+   ..+.-.+ .+++|++|.++++....    ..+..+++|+.+
T Consensus       353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE---EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CEEECcCCccCCCcchhhhhccCCcccEeECCCCcc---ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            77777665432211000   0125666666665542   1111011 34566666665532211    123445566666


Q ss_pred             EE
Q 012562          272 FI  273 (461)
Q Consensus       272 ~l  273 (461)
                      ++
T Consensus       430 ~l  431 (606)
T 3vq2_A          430 DI  431 (606)
T ss_dssp             EC
T ss_pred             EC
Confidence            65

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.03  E-value=8.6e-12  Score=128.91  Aligned_cols=266  Identities=14%  Similarity=0.028  Sum_probs=169.7

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      +++++|++..+......|..+..+++|++|++++|     .+..    ..+..+++|++|+|.++.+.+.......+.++
T Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-----~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  375 (606)
T 3t6q_A          301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGN-----TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL  375 (606)
T ss_dssp             TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC-----SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred             ccCCEEECccCCcCcCchhhhhccCcCCEEECCCC-----CcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence            35666666443322333456677999999999999     4432    24678999999999998876541123447789


Q ss_pred             ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eeeeCCCCceEEE
Q 012562          197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAFEDLDSLQNAF  272 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~l~  272 (461)
                      +.|+.|++++|...+.....+ ..++|+.|.+..|.+.........-.+++|++|+++++....   ..+..+++|+.++
T Consensus       376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  455 (606)
T 3t6q_A          376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN  455 (606)
T ss_dssp             TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence            999999999985322111111 137899999998774211111111257899999999865432   2356789999999


Q ss_pred             EEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhc
Q 012562          273 IFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLN  352 (461)
Q Consensus       273 l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~  352 (461)
                      +.-+.......+      ....+..+++|+.|++++|.+..+.    +..+. .+++|++|+++.+........   .+.
T Consensus       456 L~~n~l~~~~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~~~~---~l~  521 (606)
T 3t6q_A          456 LQGNHFPKGNIQ------KTNSLQTLGRLEILVLSFCDLSSID----QHAFT-SLKMMNHVDLSHNRLTSSSIE---ALS  521 (606)
T ss_dssp             CTTCBCGGGEEC------SSCGGGGCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECCSSCCCGGGGG---GGT
T ss_pred             CCCCCCCccccc------cchhhccCCCccEEECCCCccCccC----hhhhc-cccCCCEEECCCCccCcCChh---HhC
Confidence            943321000000      0123567899999999999765322    23344 677999999987765443322   457


Q ss_pred             cCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEE--eecCChhHHHHHHHHHhcCcC
Q 012562          353 CSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELI--HVAGDENELELVRFLLKNGHV  413 (461)
Q Consensus       353 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~--~~~g~~~e~~~~~~ll~~a~~  413 (461)
                      .+++| .|++..+.-.       ..++.  ..+++|+.+.+.  .+.+.+....|+.++-++...
T Consensus       522 ~l~~L-~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~  578 (606)
T 3t6q_A          522 HLKGI-YLNLASNHIS-------IILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQK  578 (606)
T ss_dssp             TCCSC-EEECCSSCCC-------CCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGG
T ss_pred             ccccc-EEECcCCccc-------ccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCccc
Confidence            78888 8887776531       12122  235678888887  566677778888888766443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.02  E-value=2.5e-10  Score=109.62  Aligned_cols=132  Identities=18%  Similarity=0.066  Sum_probs=80.0

Q ss_pred             eeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562          134 VTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR  210 (461)
Q Consensus       134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~  210 (461)
                      ...+|..+.  ++|++|+|+++     .+..   ..+..+++|++|+|.++.+++.  ....+.+++.|++|++++|.+.
T Consensus        43 l~~iP~~~~--~~L~~L~l~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           43 LNSIPSGLT--EAVKSLDLSNN-----RITYISNSDLQRCVNLQALVLTSNGINTI--EEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             CSSCCTTCC--TTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccccccc--ccCcEEECCCC-----cCcccCHHHhccCCCCCEEECCCCccCcc--CHhhcCCCCCCCEEECCCCcCC
Confidence            345666554  48999999999     5444   2567899999999998877642  2334678899999999998655


Q ss_pred             CceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCC-CCce---eeeCCCCceEEEEE
Q 012562          211 DFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASW-APDF---AFEDLDSLQNAFIF  274 (461)
Q Consensus       211 ~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~---~~~~~~~L~~l~l~  274 (461)
                      ++..-.+. .++|++|.+.++.+.........-.+++|++|.++++. ....   .+..+++|+++++.
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            43221111 36778888777764211110011246677777777642 2221   23345555555553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.02  E-value=4.5e-11  Score=121.16  Aligned_cols=96  Identities=15%  Similarity=0.076  Sum_probs=59.7

Q ss_pred             cccEEEEEEeccCCc--hhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---C-Cc
Q 012562           94 SIQRFRLYCLSYAND--YTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---P-FS  167 (461)
Q Consensus        94 ~i~~l~l~~~~~~~~--~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~-~~  167 (461)
                      .++.+.++.......  ..+.      ..+++++|+++.+.. ..+|..  .+++|++|+|++|     .+..   | .+
T Consensus        46 ~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~Ls~N~l-~~lp~~--~l~~L~~L~L~~N-----~l~~~~~p~~~  111 (520)
T 2z7x_B           46 KLRILIISHNRIQYLDISVFK------FNQELEYLDLSHNKL-VKISCH--PTVNLKHLDLSFN-----AFDALPICKEF  111 (520)
T ss_dssp             TCCEEECCSSCCCEEEGGGGT------TCTTCCEEECCSSCC-CEEECC--CCCCCSEEECCSS-----CCSSCCCCGGG
T ss_pred             cccEEecCCCccCCcChHHhh------cccCCCEEecCCCce-eecCcc--ccCCccEEeccCC-----ccccccchhhh
Confidence            577777775542211  1111      125788888866542 256665  7888999999988     5433   3 56


Q ss_pred             cccCcccEEEeeeEEEcChhhHHHHhhcCccc--cceEEeeee
Q 012562          168 VGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL--EKLILKSCS  208 (461)
Q Consensus       168 ~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L--e~L~L~~c~  208 (461)
                      ..+++|++|+|.++.+.+. .    +.+++.|  +.|++.+|.
T Consensus       112 ~~l~~L~~L~L~~n~l~~~-~----~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B          112 GNMSQLKFLGLSTTHLEKS-S----VLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             GGCTTCCEEEEEESSCCGG-G----GGGGTTSCEEEEEEEECT
T ss_pred             ccCCcceEEEecCcccchh-h----ccccccceeeEEEeeccc
Confidence            6788999999988877643 2    3344555  666665553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.01  E-value=2.7e-11  Score=115.32  Aligned_cols=142  Identities=14%  Similarity=0.100  Sum_probs=66.4

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE  200 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le  200 (461)
                      +++++|++..+......|..+..+++|++|+|+++     .+..-....+++|++|++.++.+.+  .....+.+++.|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-----~l~~l~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~  148 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-----QLKELPEKMPKTLQELRVHENEITK--VRKSVFNGLNQMI  148 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-----CCSBCCSSCCTTCCEEECCSSCCCB--BCHHHHTTCTTCC
T ss_pred             CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-----cCCccChhhcccccEEECCCCcccc--cCHhHhcCCcccc
Confidence            35666666444322223444555666666666666     3333111122566666666665554  2233455666666


Q ss_pred             ceEEeeeecCCceE--EEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEE
Q 012562          201 KLILKSCSFRDFKI--LDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFI  273 (461)
Q Consensus       201 ~L~L~~c~~~~~~~--~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l  273 (461)
                      .|++++|.......  ..+. .++|+.|.+..+.+.   .+... ..++|++|.++++.....   .+..+++|+.+++
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~---~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  223 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL  223 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC---SCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCccc---cCCcc-ccccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            66666654321100  0011 255666666655531   11100 115666666655433322   2334455555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.00  E-value=9.4e-11  Score=114.26  Aligned_cols=258  Identities=14%  Similarity=0.040  Sum_probs=131.9

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      +++++|++.........|..+..+++|++|+|+++     .+..  + .+..+++|++|+|.++.++.-  ...++.+++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~~~~~~l~  141 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-----AIRYLPPHVFQNVPLLTVLVLERNDLSSL--PRGIFHNTP  141 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCT
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCC-----CCCcCCHHHhcCCCCCCEEECCCCccCcC--CHHHhcCCC
Confidence            46777776443322222234445667777777766     4333  2 245566666776666655531  222345566


Q ss_pred             cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCC---------------CeEEEEecCCeeeEEEecCCCCcee
Q 012562          198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESG---------------NYKVKIACPNLVSFNFLASWAPDFA  261 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~---------------~~~~~~~~p~L~~L~l~~~~~~~~~  261 (461)
                      .|++|++++|.+.+...-.+. .++|+.|.+..+.+....               .+...-..++|++|.++++......
T Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~  221 (390)
T 3o6n_A          142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  221 (390)
T ss_dssp             TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred             CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence            666666666643322111111 255666666655431110               0000012345566666554444433


Q ss_pred             eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCC
Q 012562          262 FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMAD  341 (461)
Q Consensus       262 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  341 (461)
                      ....++|+.+++.-+...  .        . ..+..+++|+.|++++|.+..+.    +..+. .+++|++|+++.+...
T Consensus       222 ~~~~~~L~~L~l~~n~l~--~--------~-~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          222 GPVNVELTILKLQHNNLT--D--------T-AWLLNYPGLVEVDLSYNELEKIM----YHPFV-KMQRLERLYISNNRLV  285 (390)
T ss_dssp             CCCCSSCCEEECCSSCCC--C--------C-GGGGGCTTCSEEECCSSCCCEEE----SGGGT-TCSSCCEEECCSSCCC
T ss_pred             ccccccccEEECCCCCCc--c--------c-HHHcCCCCccEEECCCCcCCCcC----hhHcc-ccccCCEEECCCCcCc
Confidence            333456666666322110  0        1 23556788888888887655321    22233 5568888888666432


Q ss_pred             cchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEE
Q 012562          342 WVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSF  419 (461)
Q Consensus       342 ~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i  419 (461)
                      .  ++.  ....+|+|+.|++..+.-.       .+ +.  ..+++|+.+.+.+-.-.  .+.     +...+.|+.+.+
T Consensus       286 ~--~~~--~~~~l~~L~~L~L~~n~l~-------~~-~~~~~~l~~L~~L~L~~N~i~--~~~-----~~~~~~L~~L~l  346 (390)
T 3o6n_A          286 A--LNL--YGQPIPTLKVLDLSHNHLL-------HV-ERNQPQFDRLENLYLDHNSIV--TLK-----LSTHHTLKNLTL  346 (390)
T ss_dssp             E--EEC--SSSCCTTCCEEECCSSCCC-------CC-GGGHHHHTTCSEEECCSSCCC--CCC-----CCTTCCCSEEEC
T ss_pred             c--cCc--ccCCCCCCCEEECCCCcce-------ec-CccccccCcCCEEECCCCccc--eeC-----chhhccCCEEEc
Confidence            2  122  3356788888888776531       11 11  13466777776632111  111     466788888887


Q ss_pred             E
Q 012562          420 S  420 (461)
Q Consensus       420 ~  420 (461)
                      .
T Consensus       347 ~  347 (390)
T 3o6n_A          347 S  347 (390)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.99  E-value=4.3e-11  Score=123.68  Aligned_cols=108  Identities=17%  Similarity=-0.007  Sum_probs=49.6

Q ss_pred             ecCCeeeEEEecC-CCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccc
Q 012562          243 ACPNLVSFNFLAS-WAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERG  321 (461)
Q Consensus       243 ~~p~L~~L~l~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~  321 (461)
                      .+++|++|.++++ ......+..+++|+.+++.-+...  ..     ......+..+++|+.|++++|.+..+.     .
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~--~~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~-----~  393 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS--FS-----GCCSYSDLGTNSLRHLDLSFNGAIIMS-----A  393 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEE--EE-----EECCHHHHCCSCCCEEECCSCSEEEEC-----C
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccC--CC-----cchhhhhccCCcccEeECCCCccccch-----h
Confidence            4455555555553 112223445566666666211110  00     001233456777777777776644221     2


Q ss_pred             cCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562          322 FIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       322 ~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      .+. .+++|++|++..+.........  .+..+++|+.|++..+
T Consensus       394 ~~~-~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          394 NFM-GLEELQHLDFQHSTLKRVTEFS--AFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CCT-TCTTCCEEECTTSEEESTTTTT--TTTTCTTCCEEECTTS
T ss_pred             hcc-CCCCCCeeECCCCccCCccChh--hhhccccCCEEECcCC
Confidence            222 4456666666444321111101  3445566666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.99  E-value=3.7e-11  Score=111.84  Aligned_cols=197  Identities=17%  Similarity=0.112  Sum_probs=94.7

Q ss_pred             CCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee-cCCceEEEEe-c
Q 012562          145 ESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS-FRDFKILDIS-S  219 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~-~~~~~~~~i~-~  219 (461)
                      ++|++|+|+++     .+..   ..+..+++|++|+|.++.+++.  ....+.+++.|+.|++++|. ......-.+. .
T Consensus        32 ~~l~~L~l~~n-----~i~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l  104 (285)
T 1ozn_A           32 AASQRIFLHGN-----RISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (285)
T ss_dssp             TTCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CCceEEEeeCC-----cCCccCHHHcccCCCCCEEECCCCcccee--CHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence            45666666666     3332   1344566666666665554431  12234556666666666653 2222110111 2


Q ss_pred             CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh
Q 012562          220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN  296 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~  296 (461)
                      ++|++|.+.++.+..... ...-.+++|++|.++++......   +..+++|+.+++..+..  ...+       ...+.
T Consensus       105 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~-------~~~~~  174 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--SSVP-------ERAFR  174 (285)
T ss_dssp             TTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CEEC-------TTTTT
T ss_pred             cCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc--cccC-------HHHhc
Confidence            556666666555311100 00113567777777764433221   34455566555532211  0000       01234


Q ss_pred             cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      .+++|+.|++++|.+..+.    +..+. .+++|++|++..+...... ..  .+..+++|+.|++..+.
T Consensus       175 ~l~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~~-~~--~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          175 GLHSLDRLLLHQNRVAHVH----PHAFR-DLGRLMTLYLFANNLSALP-TE--ALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TCTTCCEEECCSSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCCC-HH--HHTTCTTCCEEECCSSC
T ss_pred             CccccCEEECCCCcccccC----HhHcc-CcccccEeeCCCCcCCcCC-HH--HcccCcccCEEeccCCC
Confidence            5667777777776544221    22333 4557777777665432211 11  35667777777776654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.98  E-value=1.9e-11  Score=119.16  Aligned_cols=269  Identities=15%  Similarity=0.081  Sum_probs=154.1

Q ss_pred             cCCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      .+++.|++.... ...+|..++ .+++|++|+|+++     .+..   ..+..+++|++|+|.++.+++.  ....+.++
T Consensus        45 ~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l  116 (390)
T 3o6n_A           45 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYL--PPHVFQNV  116 (390)
T ss_dssp             CCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTC
T ss_pred             CCceEEEecCCc-hhhCChhHhcccccCcEEECCCC-----cccccChhhccCCCCcCEEECCCCCCCcC--CHHHhcCC
Confidence            578889986543 556787754 5899999999999     5544   3567899999999999987753  34457889


Q ss_pred             ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEE
Q 012562          197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFF  275 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~  275 (461)
                      +.|+.|++++|.+..+..-.. ..++|++|.+.++.+...... ..-.+++|++|.++++......+..+++|+.+++..
T Consensus       117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY  195 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCS
T ss_pred             CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCccccccccccceeeccc
Confidence            999999999987553322111 247899999998875211110 112578999999998776666667778888777732


Q ss_pred             EeecCCCCch-----h-hHHHHHHH-HhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHh
Q 012562          276 DIIDRDERDN-----E-SCHILSKL-LNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSII  348 (461)
Q Consensus       276 ~~~~~~~~~~-----~-~~~~~~~~-l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~  348 (461)
                      +....-..+.     + ....+..+ ....++++.|+++++.+...      ..+. .+++|++|+++.+...... +. 
T Consensus       196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~------~~l~-~l~~L~~L~Ls~n~l~~~~-~~-  266 (390)
T 3o6n_A          196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT------AWLL-NYPGLVEVDLSYNELEKIM-YH-  266 (390)
T ss_dssp             SCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC------GGGG-GCTTCSEEECCSSCCCEEE-SG-
T ss_pred             ccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc------HHHc-CCCCccEEECCCCcCCCcC-hh-
Confidence            2110000000     0 00000000 00123455555555443311      1222 4456666666555432221 11 


Q ss_pred             hhhccCCCcceEEEEeccCCCccccccCcCccccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceEEEEc
Q 012562          349 SLLNCSPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKLSFSW  421 (461)
Q Consensus       349 ~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~~i~~  421 (461)
                       .+..+++|+.|++..+.-.  ...   . ....+++|+.+.+.+  +.+....       +.+.+.|+.+.+..
T Consensus       267 -~~~~l~~L~~L~L~~n~l~--~~~---~-~~~~l~~L~~L~L~~n~l~~~~~~-------~~~l~~L~~L~L~~  327 (390)
T 3o6n_A          267 -PFVKMQRLERLYISNNRLV--ALN---L-YGQPIPTLKVLDLSHNHLLHVERN-------QPQFDRLENLYLDH  327 (390)
T ss_dssp             -GGTTCSSCCEEECCSSCCC--EEE---C-SSSCCTTCCEEECCSSCCCCCGGG-------HHHHTTCSEEECCS
T ss_pred             -HccccccCCEEECCCCcCc--ccC---c-ccCCCCCCCEEECCCCcceecCcc-------ccccCcCCEEECCC
Confidence             3455667777766665421  000   0 111346788777763  2222222       23457788888763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.98  E-value=3.6e-11  Score=123.18  Aligned_cols=222  Identities=16%  Similarity=0.090  Sum_probs=150.9

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE  200 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le  200 (461)
                      ++++|++..... ..+|.  ..+++|++|+++++     .... .....+++|++|+|.++.++........+.+++.|+
T Consensus       305 ~L~~L~l~~n~~-~~l~~--~~l~~L~~L~l~~n-----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  376 (570)
T 2z63_A          305 GWQHLELVNCKF-GQFPT--LKLKSLKRLTFTSN-----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK  376 (570)
T ss_dssp             CCSEEEEESCBC-SSCCB--CBCSSCCEEEEESC-----BSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred             CccEEeeccCcc-cccCc--ccccccCEEeCcCC-----ccccccccccCCCCCEEeCcCCccCccccccccccccCccC
Confidence            788999965542 25665  46889999999999     5544 233789999999999988765322234577899999


Q ss_pred             ceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eeeeCCCCceEEEEEEEe
Q 012562          201 KLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAFEDLDSLQNAFIFFDI  277 (461)
Q Consensus       201 ~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~l~l~~~~  277 (461)
                      .|++++|...+........++|++|.+.+|.+.........-.+++|++|.++++....   ..+..+++|+.+++.-+.
T Consensus       377 ~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  456 (570)
T 2z63_A          377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  456 (570)
T ss_dssp             EEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             EEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence            99999986554433322358999999998764211111111257899999999864432   235678999999994322


Q ss_pred             ecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCc
Q 012562          278 IDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNL  357 (461)
Q Consensus       278 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L  357 (461)
                      ..        ...+...+..+++|+.|++++|.+..+.    +..+. .+++|++|++..+...... +.  .+..+++|
T Consensus       457 l~--------~~~~p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~~-~~--~~~~l~~L  520 (570)
T 2z63_A          457 FQ--------ENFLPDIFTELRNLTFLDLSQCQLEQLS----PTAFN-SLSSLQVLNMASNQLKSVP-DG--IFDRLTSL  520 (570)
T ss_dssp             EG--------GGEECSCCTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCCC-TT--TTTTCTTC
T ss_pred             Cc--------cccchhhhhcccCCCEEECCCCccccCC----hhhhh-cccCCCEEeCCCCcCCCCC-HH--HhhcccCC
Confidence            10        0012233567899999999999765321    23344 6779999999877543322 22  56789999


Q ss_pred             ceEEEEeccC
Q 012562          358 EALTIYFEGE  367 (461)
Q Consensus       358 ~~L~l~~~~~  367 (461)
                      +.|++..+..
T Consensus       521 ~~L~l~~N~~  530 (570)
T 2z63_A          521 QKIWLHTNPW  530 (570)
T ss_dssp             CEEECCSSCB
T ss_pred             cEEEecCCcc
Confidence            9999988764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.98  E-value=5.2e-11  Score=119.44  Aligned_cols=209  Identities=19%  Similarity=0.089  Sum_probs=122.5

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE  200 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le  200 (461)
                      ++++|+|+.+......|..+..+++|++|+|++|     .+.. +.+..+++|++|+|++|.+++-       ...|.|+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~l~~l~~L~~L~Ls~N~l~~l-------~~~~~L~  102 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-----VLYETLDLESLSTLRTLDLNNNYVQEL-------LVGPSIE  102 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-----CCEEEEECTTCTTCCEEECCSSEEEEE-------EECTTCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-----CCCCCcccccCCCCCEEEecCCcCCCC-------CCCCCcC
Confidence            6888888665433333445666888888888888     5443 3366788888888888877652       2347888


Q ss_pred             ceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCCcee---e-eCCCCceEEEEEE
Q 012562          201 KLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAPDFA---F-EDLDSLQNAFIFF  275 (461)
Q Consensus       201 ~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~---~-~~~~~L~~l~l~~  275 (461)
                      .|++++|.+.+...  ...++|+.|.+.+|.+.  +.....+ .+++|++|+++++......   + ..+++|+.++++.
T Consensus       103 ~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          103 TLHAANNNISRVSC--SRGQGKKNIYLANNKIT--MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             EEECCSSCCCCEEE--CCCSSCEEEECCSSCCC--SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EEECcCCcCCCCCc--cccCCCCEEECCCCCCC--CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            88888876554332  12367888888877742  1111122 4677888888776554432   2 2467777777732


Q ss_pred             EeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCC
Q 012562          276 DIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSP  355 (461)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p  355 (461)
                      +...  ..+         ....+++|+.|++++|.+..+..     .+. .+++|+.|+++.+....  ++.  .+..+|
T Consensus       179 N~l~--~~~---------~~~~l~~L~~L~Ls~N~l~~~~~-----~~~-~l~~L~~L~Ls~N~l~~--lp~--~l~~l~  237 (487)
T 3oja_A          179 NFIY--DVK---------GQVVFAKLKTLDLSSNKLAFMGP-----EFQ-SAAGVTWISLRNNKLVL--IEK--ALRFSQ  237 (487)
T ss_dssp             SCCC--EEE---------CCCCCTTCCEEECCSSCCCEECG-----GGG-GGTTCSEEECTTSCCCE--ECT--TCCCCT
T ss_pred             Cccc--ccc---------ccccCCCCCEEECCCCCCCCCCH-----hHc-CCCCccEEEecCCcCcc--cch--hhccCC
Confidence            2110  000         01136677777777776543221     122 45577777775554321  222  345667


Q ss_pred             CcceEEEEeccC
Q 012562          356 NLEALTIYFEGE  367 (461)
Q Consensus       356 ~L~~L~l~~~~~  367 (461)
                      +|+.|++.++..
T Consensus       238 ~L~~L~l~~N~l  249 (487)
T 3oja_A          238 NLEHFDLRGNGF  249 (487)
T ss_dssp             TCCEEECTTCCB
T ss_pred             CCCEEEcCCCCC
Confidence            777777766543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.98  E-value=3.1e-11  Score=125.27  Aligned_cols=146  Identities=12%  Similarity=0.076  Sum_probs=95.0

Q ss_pred             cCCeEEEEEEcceeee-----------------CCCCcc--cCCCccEEEeceeccccccccC--C-CccccCcccEEEe
Q 012562          121 RNVQVFDLTVYGEVTE-----------------LPHCLV--TCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDL  178 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~-----------------lp~~l~--~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L  178 (461)
                      +++++|+++.+.....                 +|..+.  .+++|++|+|++|     .+..  | .+..+++|++|+|
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-----~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-----PNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-----TTCSSCCTTTTTCSSCCEEEC
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-----cCCccChHHHhcCCCCCEEEC
Confidence            5799999977654443                 899998  8999999999999     5433  3 5678999999999


Q ss_pred             eeEE-EcChhhHHHHh------hcCccccceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeee
Q 012562          179 HNVE-FLDHNLLHKFV------SSRRLLEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVS  249 (461)
Q Consensus       179 ~~~~-~~~~~~l~~l~------~~cp~Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~  249 (461)
                      .++. +++. .+..-+      ..+++|+.|++.+|.+..+... .+ ..++|+.|.+..|.+  .+.+...-..++|++
T Consensus       281 s~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l--~g~ip~~~~l~~L~~  357 (636)
T 4eco_A          281 ACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL--EGKLPAFGSEIKLAS  357 (636)
T ss_dssp             TTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC--EEECCCCEEEEEESE
T ss_pred             cCCCCCccc-cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC--ccchhhhCCCCCCCE
Confidence            9987 6652 233323      3458899999988865432210 11 236788888887764  112221125567777


Q ss_pred             EEEecCCCCce--eeeCCCC-ceEEEEE
Q 012562          250 FNFLASWAPDF--AFEDLDS-LQNAFIF  274 (461)
Q Consensus       250 L~l~~~~~~~~--~~~~~~~-L~~l~l~  274 (461)
                      |.++++....+  .+..+++ |+.+++.
T Consensus       358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls  385 (636)
T 4eco_A          358 LNLAYNQITEIPANFCGFTEQVENLSFA  385 (636)
T ss_dssp             EECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred             EECCCCccccccHhhhhhcccCcEEEcc
Confidence            77776433211  2445566 7777774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.98  E-value=1.1e-11  Score=118.05  Aligned_cols=216  Identities=13%  Similarity=0.046  Sum_probs=105.8

Q ss_pred             CCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          122 NVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .++.|+++... ...+|. .+..+++|++|+|++|     .+..   ..+..+++|++|+|.++.++.-   ..  ...+
T Consensus        53 ~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l---~~--~~~~  121 (330)
T 1xku_A           53 DTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN-----KISKISPGAFAPLVKLERLYLSKNQLKEL---PE--KMPK  121 (330)
T ss_dssp             TCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSSCCSBC---CS--SCCT
T ss_pred             CCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC-----cCCeeCHHHhcCCCCCCEEECCCCcCCcc---Ch--hhcc
Confidence            45666664433 222333 3445666666666666     3333   2345566666666666655421   10  1125


Q ss_pred             cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEE
Q 012562          198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFF  275 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~  275 (461)
                      .|++|++++|.+.+.....+. .++|+.|.+..+.+...+... ..-.+++|++|.++++........-.++|+.+++..
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~  201 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG  201 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTT
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCC
Confidence            666666666543322111111 256666666665531100000 011356677777766444333222235666666622


Q ss_pred             EeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCC
Q 012562          276 DIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSP  355 (461)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p  355 (461)
                      +..  ...       ....+..+++|+.|++++|.+..+.    ...+. .+++|++|+++.+...  .++.  .+..++
T Consensus       202 n~l--~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~--~lp~--~l~~l~  263 (330)
T 1xku_A          202 NKI--TKV-------DAASLKGLNNLAKLGLSFNSISAVD----NGSLA-NTPHLRELHLNNNKLV--KVPG--GLADHK  263 (330)
T ss_dssp             SCC--CEE-------CTGGGTTCTTCCEEECCSSCCCEEC----TTTGG-GSTTCCEEECCSSCCS--SCCT--TTTTCS
T ss_pred             CcC--Ccc-------CHHHhcCCCCCCEEECCCCcCceeC----hhhcc-CCCCCCEEECCCCcCc--cCCh--hhccCC
Confidence            111  000       1123445677777777777654322    11233 4557777777665432  1121  345677


Q ss_pred             CcceEEEEecc
Q 012562          356 NLEALTIYFEG  366 (461)
Q Consensus       356 ~L~~L~l~~~~  366 (461)
                      +|+.|++..+.
T Consensus       264 ~L~~L~l~~N~  274 (330)
T 1xku_A          264 YIQVVYLHNNN  274 (330)
T ss_dssp             SCCEEECCSSC
T ss_pred             CcCEEECCCCc
Confidence            77777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.97  E-value=1e-10  Score=125.42  Aligned_cols=83  Identities=19%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C---CccccCcccEEEeeeEEEcChhhHHHHhhc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P---FSVGFSRLKSLDLHNVEFLDHNLLHKFVSS  195 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~---~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~  195 (461)
                      +++++|+|+.+......|..+..+++|++|+|++|     .+..  +   .+..+++|++|+|+++.+.+. .....+.+
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~  146 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-----GLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGK  146 (844)
T ss_dssp             TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-----CCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-CCCGGGGT
T ss_pred             CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-----CCCcccccCccccccCCCCEEECCCCccccc-ccchhHhh
Confidence            35677777554434444666666777777777777     4432  1   255677777777777766543 23334666


Q ss_pred             CccccceEEeeeec
Q 012562          196 RRLLEKLILKSCSF  209 (461)
Q Consensus       196 cp~Le~L~L~~c~~  209 (461)
                      +++|+.|+|++|.+
T Consensus       147 L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          147 LNSLKSIDFSSNQI  160 (844)
T ss_dssp             CSSCCEEEEESSCC
T ss_pred             CCCCCEEECCCCcC
Confidence            77777777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.97  E-value=1.7e-12  Score=129.43  Aligned_cols=313  Identities=16%  Similarity=0.100  Sum_probs=175.3

Q ss_pred             cccEEEEEEeccCCchhHHHHHHHHHh--cCCeEEEEEEccee----eeCCCCcccCCCccEEEeceeccccccccC--C
Q 012562           94 SIQRFRLYCLSYANDYTVYRWVCAVAR--RNVQVFDLTVYGEV----TELPHCLVTCESLEALKLACRQLRMCVLKL--P  165 (461)
Q Consensus        94 ~i~~l~l~~~~~~~~~~~~~wi~~~~~--~~l~~L~l~~~~~~----~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~  165 (461)
                      .++.+.++.... .+..+..+......  .++++|+++.....    ..+|..+..+++|++|+|++|     .+..  +
T Consensus        57 ~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-----~i~~~~~  130 (461)
T 1z7x_W           57 ALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-----LLGDAGL  130 (461)
T ss_dssp             TCCEEECTTCCC-HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-----BCHHHHH
T ss_pred             CcCEEeCCCCcC-ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-----cCchHHH
Confidence            588777765431 11122222221111  15889988544322    245666777899999999999     4433  1


Q ss_pred             -C-----ccccCcccEEEeeeEEEcCh--hhHHHHhhcCccccceEEeeeecCCceEEEE------ecCCcCeEEEeccC
Q 012562          166 -F-----SVGFSRLKSLDLHNVEFLDH--NLLHKFVSSRRLLEKLILKSCSFRDFKILDI------SSTSLKSLTLDNFG  231 (461)
Q Consensus       166 -~-----~~~l~~L~~L~L~~~~~~~~--~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i------~~~~L~~L~l~~~~  231 (461)
                       .     ....++|++|+|.++.+++.  ..+...+..++.|++|++++|.+.+.....+      ..++|++|.+.+|.
T Consensus       131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  210 (461)
T 1z7x_W          131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  210 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence             0     12356799999999988775  2345667789999999999986432211111      12489999999887


Q ss_pred             CCCCCC--eE-EEEecCCeeeEEEecCCCCcee--------eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCC
Q 012562          232 GDESGN--YK-VKIACPNLVSFNFLASWAPDFA--------FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCE  300 (461)
Q Consensus       232 ~~~~~~--~~-~~~~~p~L~~L~l~~~~~~~~~--------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~  300 (461)
                      +.+.+.  +. ..-.+++|++|+++++......        ...+++|+.+++..+..     .......+...+..+++
T Consensus       211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-----~~~~~~~l~~~l~~~~~  285 (461)
T 1z7x_W          211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-----TAKGCGDLCRVLRAKES  285 (461)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-----CHHHHHHHHHHHHHCTT
T ss_pred             CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-----CHHHHHHHHHHHhhCCC
Confidence            521110  11 1115689999999886443221        12478899888843211     11112235666777899


Q ss_pred             ccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcch-hhHhhhhccCCCcceEEEEeccCCCccccccCcCc
Q 012562          301 VKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVV-PSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSI  379 (461)
Q Consensus       301 l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~  379 (461)
                      |+.|++++|.+...........+....++|++|++..|...... ......+..+++|+.|++..+.-.....  ... .
T Consensus       286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--~~l-~  362 (461)
T 1z7x_W          286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV--REL-C  362 (461)
T ss_dssp             CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH--HHH-H
T ss_pred             cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH--HHH-H
Confidence            99999998875432111111111112358888888777553222 1122266788899988887764210000  000 0


Q ss_pred             cc---cccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562          380 FC---LTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       380 ~~---~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      ..   ..++|+++.+.+-.-.......+...+.+.+.|+.+.+.
T Consensus       363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence            10   124666666653322322333333445667777777666

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.97  E-value=1.5e-10  Score=115.00  Aligned_cols=134  Identities=11%  Similarity=0.027  Sum_probs=61.8

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE  200 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le  200 (461)
                      +++++|+++... ...+| .+..+++|++|+|++|     .+....+..+++|++|+|.++.+++- .    +.+++.|+
T Consensus        42 ~~L~~L~Ls~n~-l~~~~-~l~~l~~L~~L~Ls~n-----~l~~~~~~~l~~L~~L~Ls~N~l~~~-~----~~~l~~L~  109 (457)
T 3bz5_A           42 ATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTSN-----NITTLDLSQNTNLTYLACDSNKLTNL-D----VTPLTKLT  109 (457)
T ss_dssp             TTCCEEECCSSC-CCCCT-TGGGCTTCSEEECCSS-----CCSCCCCTTCTTCSEEECCSSCCSCC-C----CTTCTTCC
T ss_pred             CCCCEEEccCCC-cccCh-hhcccCCCCEEEccCC-----cCCeEccccCCCCCEEECcCCCCcee-e----cCCCCcCC
Confidence            355556554332 11233 3445566666666666     43332244555666666665555442 1    44556666


Q ss_pred             ceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC-CCCceeeeCCCCceEEEE
Q 012562          201 KLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS-WAPDFAFEDLDSLQNAFI  273 (461)
Q Consensus       201 ~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~L~~l~l  273 (461)
                      .|++++|.+.++.   +. .++|++|.+..|.+.+   +. .-.+++|++|.++++ ......+..+++|+.+++
T Consensus       110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~---l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  177 (457)
T 3bz5_A          110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE---ID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC  177 (457)
T ss_dssp             EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSC---CC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred             EEECCCCcCCeec---CCCCCcCCEEECCCCccce---ec-cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence            6666655443321   21 2455555555554311   11 013444555555443 122223344444554444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.97  E-value=7.3e-11  Score=111.10  Aligned_cols=137  Identities=15%  Similarity=0.142  Sum_probs=84.3

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      +++++|++.... ...+| .+..+++|++|+|++|     .+.. +.+..+++|++|+|.++.+.+-   . .+..++.|
T Consensus        41 ~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n-----~i~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~l~~L  109 (308)
T 1h6u_A           41 DGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-----QITDLAPLKNLTKITELELSGNPLKNV---S-AIAGLQSI  109 (308)
T ss_dssp             HTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-----CCCCCGGGTTCCSCCEEECCSCCCSCC---G-GGTTCTTC
T ss_pred             CCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCC-----cCCCChhHccCCCCCEEEccCCcCCCc---h-hhcCCCCC
Confidence            478888874432 22344 4666888888888888     5555 3367788888888888887654   2 36678888


Q ss_pred             cceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee-eeCCCCceEEEE
Q 012562          200 EKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA-FEDLDSLQNAFI  273 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~l~l  273 (461)
                      +.|++++|.+.+...  +. .++|++|.+.+|.+.+...   .-.+++|++|.++++...... +..+++|+.+++
T Consensus       110 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l  180 (308)
T 1h6u_A          110 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA  180 (308)
T ss_dssp             CEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             CEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence            888888887554332  11 3677777777766421111   114567777777664433221 334444444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=5.3e-11  Score=126.53  Aligned_cols=147  Identities=10%  Similarity=0.034  Sum_probs=97.7

Q ss_pred             cCCeEEEEEEcceee-----------------eCCCCcc--cCCCccEEEeceeccccccccC--C-CccccCcccEEEe
Q 012562          121 RNVQVFDLTVYGEVT-----------------ELPHCLV--TCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDL  178 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~-----------------~lp~~l~--~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L  178 (461)
                      +++++|+|+.+....                 .+|..+.  .+++|++|+|++|     .+..  | .+..+++|++|+|
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-----~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-----PNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-----TTCCSCCGGGGGCSSCCEEEC
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-----CCCccChHHHhCCCCCCEEEC
Confidence            578999997665443                 3899887  8999999999999     5433  4 5678999999999


Q ss_pred             eeEE-EcCh---hhHHHH---hhcCccccceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeee
Q 012562          179 HNVE-FLDH---NLLHKF---VSSRRLLEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVS  249 (461)
Q Consensus       179 ~~~~-~~~~---~~l~~l---~~~cp~Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~  249 (461)
                      .++. +++.   ..+..+   +..+|+|+.|+|++|.+..+... .+ ..++|+.|.+.+|.+.   .+...-.+++|+.
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L~~L~~  599 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTD  599 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC---BCCCCCTTSEESE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc---cchhhcCCCcceE
Confidence            9987 6541   123222   24567999999999865422110 12 2377888888888752   3331125678888


Q ss_pred             EEEecCCCCce--eeeCCCC-ceEEEEEE
Q 012562          250 FNFLASWAPDF--AFEDLDS-LQNAFIFF  275 (461)
Q Consensus       250 L~l~~~~~~~~--~~~~~~~-L~~l~l~~  275 (461)
                      |.++++....+  .+..+++ |+.+++..
T Consensus       600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             EECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred             EECcCCccccchHHHhhccccCCEEECcC
Confidence            88887554322  2455666 88777743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.96  E-value=4e-11  Score=120.27  Aligned_cols=189  Identities=15%  Similarity=0.087  Sum_probs=134.4

Q ss_pred             cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEec
Q 012562          143 TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISS  219 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~  219 (461)
                      .+++|++|+|++|     .+..   ..+..+++|++|+|++|.+++.  ..  +.++++|+.|+|++|.+.++.    ..
T Consensus        32 ~~~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~--l~~l~~L~~L~Ls~N~l~~l~----~~   98 (487)
T 3oja_A           32 SAWNVKELDLSGN-----PLSQISAADLAPFTKLELLNLSSNVLYET--LD--LESLSTLRTLDLNNNYVQELL----VG   98 (487)
T ss_dssp             TGGGCCEEECCSS-----CCCCCCGGGGTTCTTCCEEECTTSCCEEE--EE--CTTCTTCCEEECCSSEEEEEE----EC
T ss_pred             cCCCccEEEeeCC-----cCCCCCHHHHhCCCCCCEEEeeCCCCCCC--cc--cccCCCCCEEEecCCcCCCCC----CC
Confidence            3558999999999     6655   2567899999999999988754  12  788999999999998654322    24


Q ss_pred             CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh
Q 012562          220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN  296 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~  296 (461)
                      ++|+.|.+.+|.+   .... ....++|++|.++++.....   .+..+++|+.++++.+...  ..      ....+..
T Consensus        99 ~~L~~L~L~~N~l---~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~------~~~~l~~  166 (487)
T 3oja_A           99 PSIETLHAANNNI---SRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID--TV------NFAELAA  166 (487)
T ss_dssp             TTCCEEECCSSCC---CCEE-ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC--EE------EGGGGGG
T ss_pred             CCcCEEECcCCcC---CCCC-ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC--Cc------ChHHHhh
Confidence            8999999999885   2222 22568999999999665433   4567899999998433210  00      0122334


Q ss_pred             cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccC
Q 012562          297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGE  367 (461)
Q Consensus       297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~  367 (461)
                      .+++|+.|++++|.+..+..      .. .+++|+.|+++.+....-  +.  -+..+++|+.|++..+.-
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~------~~-~l~~L~~L~Ls~N~l~~~--~~--~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDVKG------QV-VFAKLKTLDLSSNKLAFM--GP--EFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             GTTTCCEEECTTSCCCEEEC------CC-CCTTCCEEECCSSCCCEE--CG--GGGGGTTCSEEECTTSCC
T ss_pred             hCCcccEEecCCCccccccc------cc-cCCCCCEEECCCCCCCCC--CH--hHcCCCCccEEEecCCcC
Confidence            68999999999998664321      22 466999999987765321  11  246789999999988653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.96  E-value=2.9e-11  Score=114.43  Aligned_cols=103  Identities=12%  Similarity=0.020  Sum_probs=56.6

Q ss_pred             hcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCcccccc
Q 012562          296 NELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKIS  375 (461)
Q Consensus       296 ~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~  375 (461)
                      ..+++++.|++++|.+..+..      .. .+++|++|+++.+....-  +.  -+..+++|+.|++..+.-.       
T Consensus       166 ~~l~~L~~L~L~~N~l~~~~~------~~-~l~~L~~L~Ls~N~l~~l--~~--~~~~l~~L~~L~L~~N~l~-------  227 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDVKG------QV-VFAKLKTLDLSSNKLAFM--GP--EFQSAAGVTWISLRNNKLV-------  227 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEEEC------CC-CCTTCCEEECCSSCCCEE--CG--GGGGGTTCSEEECTTSCCC-------
T ss_pred             hccCcCCEEECCCCcCccccc------cc-ccccCCEEECCCCcCCcc--hh--hhcccCcccEEECcCCccc-------
Confidence            457888888888887654321      11 356888888877654221  11  2456788888888776531       


Q ss_pred             CcCcc--ccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562          376 NKSIF--CLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       376 ~~~~~--~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      .+ +.  ...++|+.+.+.+-.-..   ..+...+...+.|+.+.+.
T Consensus       228 ~l-~~~~~~l~~L~~L~l~~N~~~~---~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          228 LI-EKALRFSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             EE-CTTCCCCTTCCEEECTTCCCBH---HHHHHHHHTCHHHHHHHHH
T ss_pred             ch-hhHhhcCCCCCEEEccCCCccC---cCHHHHHhccccceEEECC
Confidence            11 11  123556666555322221   1223344556666655444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.96  E-value=9.6e-10  Score=117.93  Aligned_cols=104  Identities=15%  Similarity=0.089  Sum_probs=54.4

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .++++|+++.+......|..+..+++|+.|+|++|     .+..   ..+..+++|++|+|.++.+++.  ....+.++|
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~  338 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-----KINKIADEAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLP  338 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-----CCCEECTTTTTTCSSCCEEEEESCCCSCC--CSCSCSSCT
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCC-----cCCCCChHHhcCCCCCCEEECCCCCCCcc--CHHHhcCCC
Confidence            35666666443322333444445667777777766     3322   2345566677777766655431  222345666


Q ss_pred             cccceEEeeeecCCceEEEEe-cCCcCeEEEeccC
Q 012562          198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFG  231 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~  231 (461)
                      .|+.|++++|.+..+..-.+. .++|+.|.+.+|.
T Consensus       339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence            666666666654332211111 2556666666555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.96  E-value=5.2e-12  Score=131.14  Aligned_cols=178  Identities=10%  Similarity=0.107  Sum_probs=86.0

Q ss_pred             ccccCcccEEEeeeEEEcCh---------------hhHHHHhh--cCccccceEEeeeecCCceEEEEe-cCCcCeEEEe
Q 012562          167 SVGFSRLKSLDLHNVEFLDH---------------NLLHKFVS--SRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLD  228 (461)
Q Consensus       167 ~~~l~~L~~L~L~~~~~~~~---------------~~l~~l~~--~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~  228 (461)
                      +..+++|++|+|.++.+++.               +.+...+.  ++++|+.|+|++|.+.+..+-.+. .++|+.|.+.
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            44567777777777766541               00344444  677777777777654332221111 2567777777


Q ss_pred             ccC-CCCCC-CeEEEE-e------cCCeeeEEEecCCCCce----eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHH
Q 012562          229 NFG-GDESG-NYKVKI-A------CPNLVSFNFLASWAPDF----AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLL  295 (461)
Q Consensus       229 ~~~-~~~~~-~~~~~~-~------~p~L~~L~l~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l  295 (461)
                      .|. +  .+ .+...+ .      +++|++|.++++....+    .+..+++|+.+++..+...         ..+. .+
T Consensus       282 ~n~~l--~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~---------g~ip-~~  349 (636)
T 4eco_A          282 CNRGI--SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE---------GKLP-AF  349 (636)
T ss_dssp             TCTTS--CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE---------EECC-CC
T ss_pred             CCCCC--ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc---------cchh-hh
Confidence            665 3  11 111111 1      26677777766443322    3455666666666322110         0011 22


Q ss_pred             hcCCCccEEEEecchhhhhccccccccCCcccCc-ccEEEEEEeCCCcchhhHhhhhcc--CCCcceEEEEecc
Q 012562          296 NELCEVKALKLSTAFLRFHFVLEERGFIPNSFNY-LKSLVLSVSMADWVVPSIISLLNC--SPNLEALTIYFEG  366 (461)
Q Consensus       296 ~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~l~~~~lL~~--~p~L~~L~l~~~~  366 (461)
                      ..+++|+.|++++|.+..+     +..+. .+++ |++|+++.+... . ++.  .+..  +++|+.|++..+.
T Consensus       350 ~~l~~L~~L~L~~N~l~~l-----p~~l~-~l~~~L~~L~Ls~N~l~-~-lp~--~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          350 GSEIKLASLNLAYNQITEI-----PANFC-GFTEQVENLSFAHNKLK-Y-IPN--IFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             EEEEEESEEECCSSEEEEC-----CTTSE-EECTTCCEEECCSSCCS-S-CCS--CCCTTCSSCEEEEECCSSC
T ss_pred             CCCCCCCEEECCCCccccc-----cHhhh-hhcccCcEEEccCCcCc-c-cch--hhhhcccCccCEEECcCCc
Confidence            3455666666666654411     12222 4445 666666555432 1 111  1222  2356666665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.94  E-value=1.4e-12  Score=130.23  Aligned_cols=310  Identities=17%  Similarity=0.110  Sum_probs=142.1

Q ss_pred             cccEEEEEEeccCCchhHHHHHHHHH--hcCCeEEEEEEcceee----eCCCCcc-cCCCccEEEeceeccccccccC--
Q 012562           94 SIQRFRLYCLSYANDYTVYRWVCAVA--RRNVQVFDLTVYGEVT----ELPHCLV-TCESLEALKLACRQLRMCVLKL--  164 (461)
Q Consensus        94 ~i~~l~l~~~~~~~~~~~~~wi~~~~--~~~l~~L~l~~~~~~~----~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~--  164 (461)
                      .++.+.++.....+ ..+.. +..+.  .+++++|+++.+....    .+...+. ..++|++|+|++|     .+..  
T Consensus        86 ~L~~L~L~~n~i~~-~~~~~-l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-----~l~~~~  158 (461)
T 1z7x_W           86 KIQKLSLQNCCLTG-AGCGV-LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-----SLSAAS  158 (461)
T ss_dssp             CCCEEECTTSCCBG-GGHHH-HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-----CCBGGG
T ss_pred             ceeEEEccCCCCCH-HHHHH-HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-----CCCHHH
Confidence            47777776554221 11111 11111  2467777775432111    1111111 1346777777777     3332  


Q ss_pred             -----CCccccCcccEEEeeeEEEcChhhHHHHhh----cCccccceEEeeeecCCceEEEE-----ecCCcCeEEEecc
Q 012562          165 -----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVS----SRRLLEKLILKSCSFRDFKILDI-----SSTSLKSLTLDNF  230 (461)
Q Consensus       165 -----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~----~cp~Le~L~L~~c~~~~~~~~~i-----~~~~L~~L~l~~~  230 (461)
                           ..+..+++|++|+|.++.+++. ....+..    ..+.|+.|++++|.+.+.....+     ..++|++|.+..|
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNNDINEA-GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHH-HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHhhCCCCCEEECcCCCcchH-HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence                 1233467777777777776654 3443333    34577777777775433210001     2367777777766


Q ss_pred             CCCCCCC--e-E-EEEecCCeeeEEEecCCCCce-------eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh-cC
Q 012562          231 GGDESGN--Y-K-VKIACPNLVSFNFLASWAPDF-------AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN-EL  298 (461)
Q Consensus       231 ~~~~~~~--~-~-~~~~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~-~l  298 (461)
                      .+.+.+.  + . +.-..++|++|.++++.....       .+..+++|++++++.+..     .......+...+. ..
T Consensus       238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-----~~~~~~~l~~~l~~~~  312 (461)
T 1z7x_W          238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-----GDEGARLLCETLLEPG  312 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC-----HHHHHHHHHHHHTSTT
T ss_pred             cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC-----chHHHHHHHHHhccCC
Confidence            5311000  0 0 001256777777776544331       133467777777732211     0000111222221 22


Q ss_pred             CCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhH-hhhhc-cCCCcceEEEEeccCCCccccccC
Q 012562          299 CEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSI-ISLLN-CSPNLEALTIYFEGEDCDDWKISN  376 (461)
Q Consensus       299 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~-~~lL~-~~p~L~~L~l~~~~~~~~~~~~~~  376 (461)
                      ++++.|++++|.+...........+. .+++|++|+++.+......... ...+. .+++|+.|++..+.-.....  ..
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~--~~  389 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC--SS  389 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHh-hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhH--HH
Confidence            57777777777644221111112222 3457777777666443222221 11222 26677777776654210000  01


Q ss_pred             cCccc--cccceeEEEEEeecCC-hhHHHHHHHHHhcCcCcceEEEE
Q 012562          377 KSIFC--LTCHLKTVELIHVAGD-ENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       377 ~~~~~--~~~~Lk~v~i~~~~g~-~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      . +..  ..++|+++.+.+-.-. .+...+++.+-+....|+++.+.
T Consensus       390 l-~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~  435 (461)
T 1z7x_W          390 L-AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY  435 (461)
T ss_dssp             H-HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             H-HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeec
Confidence            1 111  2356666666532211 22234444443445567777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.93  E-value=2.1e-11  Score=116.21  Aligned_cols=14  Identities=7%  Similarity=-0.112  Sum_probs=7.3

Q ss_pred             ccCCCcceEEEEec
Q 012562          352 NCSPNLEALTIYFE  365 (461)
Q Consensus       352 ~~~p~L~~L~l~~~  365 (461)
                      ..+++|+.|++..+
T Consensus       261 ~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          261 PDLKLLQVVYLHTN  274 (332)
T ss_dssp             GGCTTCCEEECCSS
T ss_pred             hcCccCCEEECCCC
Confidence            44555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.93  E-value=4.2e-11  Score=113.27  Aligned_cols=222  Identities=18%  Similarity=0.102  Sum_probs=131.7

Q ss_pred             hhHHHHHHHHH--hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcC
Q 012562          109 YTVYRWVCAVA--RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLD  185 (461)
Q Consensus       109 ~~~~~wi~~~~--~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~  185 (461)
                      ..+...+....  .+++++|+++.+......|..+..+++|++|+|++|     .+.. +.+..+++|++|+|.++.+++
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-----VLYETLDLESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-----CCEEEEEETTCTTCCEEECCSSEEEE
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-----cCCcchhhhhcCCCCEEECcCCcccc
Confidence            34444444333  246888888655422222344556888999999888     5443 336778889999998888765


Q ss_pred             hhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCCceee--
Q 012562          186 HNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAPDFAF--  262 (461)
Q Consensus       186 ~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~--  262 (461)
                      -       ..++.|+.|++++|.+.+...  ...++|++|.+.+|.+...  ....+ ..++|++|+++++.......  
T Consensus        95 l-------~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           95 L-------LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             E-------EECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSG--GGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             c-------cCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCc--cchhhhccCCCCEEECCCCCCCcccHHH
Confidence            2       245888888888876443221  1246788888887774211  11112 46788888888765544332  


Q ss_pred             --eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC
Q 012562          263 --EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA  340 (461)
Q Consensus       263 --~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  340 (461)
                        ..+++|+.++++.+..  ...+.         ...+++++.|++++|.+..+..     .+. .+++|++|+++.+..
T Consensus       164 ~~~~l~~L~~L~L~~N~l--~~~~~---------~~~l~~L~~L~Ls~N~l~~l~~-----~~~-~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFI--YDVKG---------QVVFAKLKTLDLSSNKLAFMGP-----EFQ-SAAGVTWISLRNNKL  226 (317)
T ss_dssp             GGGGTTTCCEEECTTSCC--CEEEC---------CCCCTTCCEEECCSSCCCEECG-----GGG-GGTTCSEEECTTSCC
T ss_pred             HhhccCcCCEEECCCCcC--ccccc---------ccccccCCEEECCCCcCCcchh-----hhc-ccCcccEEECcCCcc
Confidence              3467788887732211  00000         1136778888888776653321     122 456788887766543


Q ss_pred             CcchhhHhhhhccCCCcceEEEEeccC
Q 012562          341 DWVVPSIISLLNCSPNLEALTIYFEGE  367 (461)
Q Consensus       341 ~~~~l~~~~lL~~~p~L~~L~l~~~~~  367 (461)
                      ..  ++.  .+..+++|+.|++..+..
T Consensus       227 ~~--l~~--~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          227 VL--IEK--ALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             CE--ECT--TCCCCTTCCEEECTTCCC
T ss_pred             cc--hhh--HhhcCCCCCEEEccCCCc
Confidence            21  222  346677888887776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.93  E-value=2.1e-12  Score=121.56  Aligned_cols=223  Identities=16%  Similarity=0.099  Sum_probs=116.3

Q ss_pred             CCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562          122 NVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE  200 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le  200 (461)
                      ++++|++.... ...+|..+ ..+++|++|+|+++.+............+++|++|+|.++.+..-   ...+.++++|+
T Consensus        29 ~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l---~~~~~~l~~L~  104 (306)
T 2z66_A           29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLE  104 (306)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE---EEEEETCTTCC
T ss_pred             CCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC---hhhcCCCCCCC
Confidence            56666664443 23555553 346777777777772211000012233567777777776655421   12245667777


Q ss_pred             ceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCc----eeeeCCCCceEEEE
Q 012562          201 KLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPD----FAFEDLDSLQNAFI  273 (461)
Q Consensus       201 ~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l~l  273 (461)
                      .|++++|.+.+.... .+ ..++|+.|.+.++.+.  +... ..-.+++|++|.++++....    ..+..+++|+.+++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE--ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCC--ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence            777776653222110 01 1256777777665531  0000 00135677777777643322    23456677777777


Q ss_pred             EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562          274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC  353 (461)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~  353 (461)
                      +.+..  ...       ....+..+++|+.|++++|.+..+..    ..+. .+++|++|+++.+........   .+..
T Consensus       183 s~n~l--~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~L~~N~l~~~~~~---~~~~  245 (306)
T 2z66_A          183 SQCQL--EQL-------SPTAFNSLSSLQVLNMSHNNFFSLDT----FPYK-CLNSLQVLDYSLNHIMTSKKQ---ELQH  245 (306)
T ss_dssp             TTSCC--CEE-------CTTTTTTCTTCCEEECTTSCCSBCCS----GGGT-TCTTCCEEECTTSCCCBCSSS---SCCC
T ss_pred             CCCCc--CCc-------CHHHhcCCCCCCEEECCCCccCccCh----hhcc-CcccCCEeECCCCCCcccCHH---HHHh
Confidence            32211  000       11234467788888888876553221    1223 556888888876654332222   3345


Q ss_pred             CC-CcceEEEEeccC
Q 012562          354 SP-NLEALTIYFEGE  367 (461)
Q Consensus       354 ~p-~L~~L~l~~~~~  367 (461)
                      +| +|+.|++.++..
T Consensus       246 ~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          246 FPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCTTCCEEECTTCCE
T ss_pred             hhccCCEEEccCCCe
Confidence            54 788888877654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.92  E-value=2.7e-11  Score=117.94  Aligned_cols=92  Identities=17%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             eCCCCcccCCCccEEEeceeccccccccC-------CCccccCcccEEEeeeEEEc---Ch-----hhHHHHhhcCcccc
Q 012562          136 ELPHCLVTCESLEALKLACRQLRMCVLKL-------PFSVGFSRLKSLDLHNVEFL---DH-----NLLHKFVSSRRLLE  200 (461)
Q Consensus       136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-------~~~~~l~~L~~L~L~~~~~~---~~-----~~l~~l~~~cp~Le  200 (461)
                      .++..+..+++|++|+|++|     .+..       ..+..+++|++|+|.++.+.   +.     ..+...+..+++|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n-----~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~   97 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGN-----TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   97 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTS-----EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHhcCCCccEEECCCC-----CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence            34555556888999999998     4443       13456889999999886432   11     12333356889999


Q ss_pred             ceEEeeeecCCceEE----E-EecCCcCeEEEeccCC
Q 012562          201 KLILKSCSFRDFKIL----D-ISSTSLKSLTLDNFGG  232 (461)
Q Consensus       201 ~L~L~~c~~~~~~~~----~-i~~~~L~~L~l~~~~~  232 (461)
                      .|+|++|.+.+....    . ...++|++|.+.+|.+
T Consensus        98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            999999875442111    1 1247788888887764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.91  E-value=9.4e-10  Score=112.13  Aligned_cols=113  Identities=19%  Similarity=0.090  Sum_probs=72.9

Q ss_pred             eeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562          134 VTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR  210 (461)
Q Consensus       134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~  210 (461)
                      ...+|..+.  ++|++|+|+++     .+..   ..+..+++|++|+|.++.+++.  ....+.++++|++|++++|.+.
T Consensus        17 l~~ip~~~~--~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           17 FTSIPSGLT--AAMKSLDLSFN-----KITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             CSSCCSCCC--TTCCEEECCSS-----CCCEECSSTTSSCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCC
T ss_pred             cccccccCC--CCccEEECcCC-----ccCccChhhhhcCCcccEEECCCCCcCcc--ChhhccccccCCEEECCCCccC
Confidence            345676554  68999999999     5443   3567899999999999887652  2344678999999999998755


Q ss_pred             CceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562          211 DFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS  255 (461)
Q Consensus       211 ~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~  255 (461)
                      +...-.+. .++|++|.+.+|.+...+.....-.+++|++|+++++
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n  133 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV  133 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCC
Confidence            43221121 2667777777666421111111124566666666664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.91  E-value=3.8e-11  Score=123.82  Aligned_cols=145  Identities=14%  Similarity=0.097  Sum_probs=103.5

Q ss_pred             cCCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      .+++.+++.... ...+|..++ .+++|++|+|+++     .+..   ..+..+++|++|+|.++.+++-  ....+.++
T Consensus        51 ~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l  122 (597)
T 3oja_B           51 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYL--PPHVFQNV  122 (597)
T ss_dssp             CCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTC
T ss_pred             CCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC-----CCCCCChHHhcCCCCCCEEECCCCcCCCC--CHHHHcCC
Confidence            567888874432 456777655 4899999999999     5544   3677899999999999988763  34457889


Q ss_pred             ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEE
Q 012562          197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIF  274 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~  274 (461)
                      ++|+.|+|++|.+.++..-.+ ..++|++|.+.+|.+...... ..-.+++|++|.++++......+..+++|+.+++.
T Consensus       123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~  200 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS  200 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred             CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence            999999999987554322111 237899999998875211110 11257899999999877666666777888887773

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.90  E-value=2.2e-10  Score=106.05  Aligned_cols=199  Identities=18%  Similarity=0.107  Sum_probs=92.1

Q ss_pred             CccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCC
Q 012562          146 SLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTS  221 (461)
Q Consensus       146 ~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~  221 (461)
                      +|++|+|+++     .+..   ..+..+++|++|+|.++.+.+-  ....+.+++.|+.|++++|.+.+...-.+ ..++
T Consensus        29 ~l~~L~ls~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (276)
T 2z62_A           29 STKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (276)
T ss_dssp             TCCEEECTTC-----CCCEECTTTTTTCTTCSEEECTTCCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CccEEECCCC-----cccccCHhHhccccCCcEEECCCCcCCcc--CHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence            4555665555     3322   1344555566666555544321  11224455556666655553221110000 1245


Q ss_pred             cCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc----eeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhc
Q 012562          222 LKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD----FAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNE  297 (461)
Q Consensus       222 L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  297 (461)
                      |++|.+..+.+....... .-.+++|++|.++++....    ..+..+++|+.+++..+..  ...+.   . ...-+..
T Consensus       102 L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l--~~~~~---~-~~~~l~~  174 (276)
T 2z62_A          102 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYC---T-DLRVLHQ  174 (276)
T ss_dssp             CCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC--CEECG---G-GGHHHHT
T ss_pred             ccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC--CcCCH---H-Hhhhhhh
Confidence            555555555431111110 1145667777776644332    1244556666666632211  00000   0 1112233


Q ss_pred             CCCcc-EEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccC
Q 012562          298 LCEVK-ALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGE  367 (461)
Q Consensus       298 l~~l~-~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~  367 (461)
                      ++.+. .|++++|.+..+...    .+  ...+|++|+++.+....-. ..  .+..+++|+.|++..+..
T Consensus       175 L~~l~l~L~ls~n~l~~~~~~----~~--~~~~L~~L~L~~n~l~~~~-~~--~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMNFIQPG----AF--KEIRLKELALDTNQLKSVP-DG--IFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CTTCCEEEECCSSCCCEECTT----SS--CSCCEEEEECCSSCCSCCC-TT--TTTTCCSCCEEECCSSCB
T ss_pred             ccccceeeecCCCcccccCcc----cc--CCCcccEEECCCCceeecC-Hh--HhcccccccEEEccCCcc
Confidence            44444 677777765532211    11  2337888888666542211 22  456778888888877653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.89  E-value=3.4e-09  Score=108.90  Aligned_cols=111  Identities=14%  Similarity=0.015  Sum_probs=56.3

Q ss_pred             CCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccccCc
Q 012562          298 LCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNK  377 (461)
Q Consensus       298 l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~  377 (461)
                      +++|+.|.+.+|.+..         +|..+++|+.|+++.|....  ++     ..+++|+.|++..+.-       ..+
T Consensus       200 ~~~L~~L~L~~N~l~~---------l~~~~~~L~~L~Ls~N~L~~--lp-----~~l~~L~~L~Ls~N~L-------~~l  256 (622)
T 3g06_A          200 PSELYKLWAYNNRLTS---------LPALPSGLKELIVSGNRLTS--LP-----VLPSELKELMVSGNRL-------TSL  256 (622)
T ss_dssp             CTTCCEEECCSSCCSS---------CCCCCTTCCEEECCSSCCSC--CC-----CCCTTCCEEECCSSCC-------SCC
T ss_pred             cchhhEEECcCCcccc---------cCCCCCCCCEEEccCCccCc--CC-----CCCCcCcEEECCCCCC-------CcC
Confidence            3456666666554332         22133577777776553321  11     3457788887777543       123


Q ss_pred             CccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEEccCChhhHHHHHHHHhcC
Q 012562          378 SIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKL  438 (461)
Q Consensus       378 ~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~~~~~~~~~~~~~~~l~~~  438 (461)
                       +. ..++|+.+.+.+-.-.    .+.. -+.+.+.|+.+.+....-.....+.+.++...
T Consensus       257 -p~-~~~~L~~L~Ls~N~L~----~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~  310 (622)
T 3g06_A          257 -PM-LPSGLLSLSVYRNQLT----RLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSA  310 (622)
T ss_dssp             -CC-CCTTCCEEECCSSCCC----SCCG-GGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred             -Cc-ccccCcEEeCCCCCCC----cCCH-HHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence             22 4466777766532111    1111 24678888888877332112223345555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.88  E-value=7.7e-09  Score=105.74  Aligned_cols=82  Identities=21%  Similarity=0.161  Sum_probs=46.1

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      +++++|+++.+....-.|..+..+++|++|+|++|     .+.. |.. .+++|++|+|.++.+.+- .+...+.+++.|
T Consensus        76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~lp~~-~l~~L~~L~Ls~N~l~~l-~~p~~~~~l~~L  148 (562)
T 3a79_B           76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-----RLQNISCC-PMASLRHLDLSFNDFDVL-PVCKEFGNLTKL  148 (562)
T ss_dssp             TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-----CCCEECSC-CCTTCSEEECCSSCCSBC-CCCGGGGGCTTC
T ss_pred             CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-----cCCccCcc-ccccCCEEECCCCCcccc-CchHhhcccCcc
Confidence            45666666554433333444555667777777766     4333 322 566677777766665542 222335566666


Q ss_pred             cceEEeeeec
Q 012562          200 EKLILKSCSF  209 (461)
Q Consensus       200 e~L~L~~c~~  209 (461)
                      +.|++++|.+
T Consensus       149 ~~L~L~~n~l  158 (562)
T 3a79_B          149 TFLGLSAAKF  158 (562)
T ss_dssp             CEEEEECSBC
T ss_pred             cEEecCCCcc
Confidence            6666666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.87  E-value=2.8e-10  Score=107.13  Aligned_cols=187  Identities=17%  Similarity=0.124  Sum_probs=114.7

Q ss_pred             cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cC
Q 012562          143 TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-ST  220 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~  220 (461)
                      .+++|++|+++++     .+.. +....+++|++|+|.++.+.+-   .. +.+++.|+.|++++|.+.++.  .+. .+
T Consensus        39 ~l~~L~~L~l~~~-----~i~~l~~~~~l~~L~~L~L~~n~i~~~---~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~  107 (308)
T 1h6u_A           39 DLDGITTLSAFGT-----GVTTIEGVQYLNNLIGLELKDNQITDL---AP-LKNLTKITELELSGNPLKNVS--AIAGLQ  107 (308)
T ss_dssp             HHHTCCEEECTTS-----CCCCCTTGGGCTTCCEEECCSSCCCCC---GG-GTTCCSCCEEECCSCCCSCCG--GGTTCT
T ss_pred             HcCCcCEEEeeCC-----CccCchhhhccCCCCEEEccCCcCCCC---hh-HccCCCCCEEEccCCcCCCch--hhcCCC
Confidence            3567888888877     5544 5566778888888887777653   22 677788888888887655432  111 36


Q ss_pred             CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee-eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCC
Q 012562          221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA-FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELC  299 (461)
Q Consensus       221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~  299 (461)
                      +|++|.+.+|.+.+...   .-.+++|++|.++++...... +..+++|+.+++.-+..  .+        +.. +..++
T Consensus       108 ~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~--------~~~-l~~l~  173 (308)
T 1h6u_A          108 SIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--SD--------LTP-LANLS  173 (308)
T ss_dssp             TCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC--CC--------CGG-GTTCT
T ss_pred             CCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcC--CC--------Chh-hcCCC
Confidence            78888887776422111   125677888888775443332 55677788777743211  00        111 55677


Q ss_pred             CccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          300 EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       300 ~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      +|+.|++++|.+..+..      +. .+++|++|+++.+......     -+..+|+|+.|++..+.
T Consensus       174 ~L~~L~l~~n~l~~~~~------l~-~l~~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          174 KLTTLKADDNKISDISP------LA-SLPNLIEVHLKNNQISDVS-----PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             TCCEEECCSSCCCCCGG------GG-GCTTCCEEECTTSCCCBCG-----GGTTCTTCCEEEEEEEE
T ss_pred             CCCEEECCCCccCcChh------hc-CCCCCCEEEccCCccCccc-----cccCCCCCCEEEccCCe
Confidence            88888888776543221      23 5567888877666442211     14667888888887764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.86  E-value=1.2e-10  Score=123.85  Aligned_cols=226  Identities=12%  Similarity=0.035  Sum_probs=140.3

Q ss_pred             cCCeEEEEEEcceeeeCCC--CcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPH--CLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      +++++|+++.+... .+|.  .+..+++|+.|+|++|     .+.. |.+..+++|++|+|.++.+..   +..-+.+++
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-----~l~~lp~~~~L~~L~~L~Ls~N~l~~---lp~~l~~l~  618 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-----KVRHLEAFGTNVKLTDLKLDYNQIEE---IPEDFCAFT  618 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-----CCCBCCCCCTTSEESEEECCSSCCSC---CCTTSCEEC
T ss_pred             CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-----CcccchhhcCCCcceEEECcCCcccc---chHHHhhcc
Confidence            37888888766544 7888  7888999999999998     4433 567788899999999888762   333467788


Q ss_pred             c-ccceEEeeeecCCceEEEEe---cCCcCeEEEeccCCCCCCC-eE---EEEecCCeeeEEEecCCCCcee---eeCCC
Q 012562          198 L-LEKLILKSCSFRDFKILDIS---STSLKSLTLDNFGGDESGN-YK---VKIACPNLVSFNFLASWAPDFA---FEDLD  266 (461)
Q Consensus       198 ~-Le~L~L~~c~~~~~~~~~i~---~~~L~~L~l~~~~~~~~~~-~~---~~~~~p~L~~L~l~~~~~~~~~---~~~~~  266 (461)
                      . |+.|+|++|.+..+.. .+.   .++|+.|.+..|.+..... +.   -....++|++|.++++....+.   +..++
T Consensus       619 ~~L~~L~Ls~N~L~~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~  697 (876)
T 4ecn_A          619 DQVEGLGFSHNKLKYIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS  697 (876)
T ss_dssp             TTCCEEECCSSCCCSCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC
T ss_pred             ccCCEEECcCCCCCcCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC
Confidence            8 9999999987543321 111   1348888888887522100 00   0123468999999886554332   34678


Q ss_pred             CceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhh
Q 012562          267 SLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPS  346 (461)
Q Consensus       267 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~  346 (461)
                      +|+.+++.-+...  ..|..........+..+++|+.|+|++|.+..+...  .. . ..+++|+.|+++.+....  ++
T Consensus       698 ~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~--l~-~-~~l~~L~~L~Ls~N~L~~--lp  769 (876)
T 4ecn_A          698 PISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD--FR-A-TTLPYLSNMDVSYNCFSS--FP  769 (876)
T ss_dssp             CCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG--GS-T-TTCTTCCEEECCSSCCSS--CC
T ss_pred             CCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccchHH--hh-h-ccCCCcCEEEeCCCCCCc--cc
Confidence            8999888543221  111100000000012234889999998876533221  11 0 145688999987775533  23


Q ss_pred             HhhhhccCCCcceEEEEecc
Q 012562          347 IISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       347 ~~~lL~~~p~L~~L~l~~~~  366 (461)
                      .  -+..+++|+.|++..+.
T Consensus       770 ~--~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          770 T--QPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             C--GGGGCTTCCEEECCCCB
T ss_pred             h--hhhcCCCCCEEECCCCC
Confidence            2  45678899999887643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.86  E-value=8.2e-10  Score=111.83  Aligned_cols=242  Identities=12%  Similarity=0.131  Sum_probs=142.2

Q ss_pred             CCCccEEEeceecc--ccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhh--cCccccceEEeeeecCCc-----
Q 012562          144 CESLEALKLACRQL--RMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVS--SRRLLEKLILKSCSFRDF-----  212 (461)
Q Consensus       144 ~~~L~~L~L~~~~~--~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~--~cp~Le~L~L~~c~~~~~-----  212 (461)
                      +++|+.|++++|..  ....+..  +.+..+++|++|+|.++.+.+. .+..+..  .++.|+.|++++|.+.+.     
T Consensus       189 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  267 (520)
T 2z7x_B          189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN-SFIRILQLVWHTTVWYFSISNVKLQGQLDFRD  267 (520)
T ss_dssp             CSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH-HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCC
T ss_pred             ccceeeccccccccccccceeecchhhhccccchhhccccccccCHH-HHHHHHHHhhhCcccEEEeecccccCccccch
Confidence            67788888887610  0000222  4566788999999999888776 5554443  357899999998874321     


Q ss_pred             --------eEEE---Ee----------------cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eee
Q 012562          213 --------KILD---IS----------------STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAF  262 (461)
Q Consensus       213 --------~~~~---i~----------------~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~  262 (461)
                              ..+.   +.                .++|+.|.+.++.+..   ....-.+++|++|+++++....   ..+
T Consensus       268 ~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  344 (520)
T 2z7x_B          268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH---MLCPSKISPFLHLDFSNNLLTDTVFENC  344 (520)
T ss_dssp             CCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC---CCCCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             hhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc---ccchhhCCcccEEEeECCccChhhhhhh
Confidence                    1111   10                0346777777665311   1111257889999998865433   345


Q ss_pred             eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhh-hccccccccCCcccCcccEEEEEEeCCC
Q 012562          263 EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRF-HFVLEERGFIPNSFNYLKSLVLSVSMAD  341 (461)
Q Consensus       263 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~  341 (461)
                      ..+++|+.+++.-+..     ..  ...+...+..+++|+.|++++|.+.. +..    ..+. .+++|++|+++.+...
T Consensus       345 ~~l~~L~~L~L~~N~l-----~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~----~~~~-~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          345 GHLTELETLILQMNQL-----KE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKK----GDCS-WTKSLLSLNMSSNILT  412 (520)
T ss_dssp             CCCSSCCEEECCSSCC-----CB--HHHHHHHHTTCTTCCEEECCSSCCBCCGGG----CSCC-CCTTCCEEECCSSCCC
T ss_pred             ccCCCCCEEEccCCcc-----Cc--cccchHHHhhCCCCCEEECCCCcCCccccc----chhc-cCccCCEEECcCCCCC
Confidence            6788899888843321     00  22355667889999999999987653 221    1122 4568888888766543


Q ss_pred             cchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceE
Q 012562          342 WVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKL  417 (461)
Q Consensus       342 ~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~  417 (461)
                      ......  +   .++|+.|++..+.-.       .+ |.  ..+++|+.+.+.+  +..-..+      .+.+.+.|+.+
T Consensus       413 ~~~~~~--l---~~~L~~L~Ls~N~l~-------~i-p~~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L  473 (520)
T 2z7x_B          413 DTIFRC--L---PPRIKVLDLHSNKIK-------SI-PKQVVKLEALQELNVASNQLKSVPDG------IFDRLTSLQKI  473 (520)
T ss_dssp             GGGGGS--C---CTTCCEEECCSSCCC-------CC-CGGGGGCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEE
T ss_pred             cchhhh--h---cccCCEEECCCCccc-------cc-chhhhcCCCCCEEECCCCcCCccCHH------HhccCCcccEE
Confidence            322221  1   168888888776531       12 21  1345666666652  2211111      34667778887


Q ss_pred             EEE
Q 012562          418 SFS  420 (461)
Q Consensus       418 ~i~  420 (461)
                      .+.
T Consensus       474 ~l~  476 (520)
T 2z7x_B          474 WLH  476 (520)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.85  E-value=3.1e-10  Score=112.83  Aligned_cols=184  Identities=14%  Similarity=0.030  Sum_probs=125.9

Q ss_pred             CcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562          140 CLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS  218 (461)
Q Consensus       140 ~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~  218 (461)
                      .+..+++|++|+++++     .+.. |.+..+++|++|+|.++.+++-   .  +..++.|++|++++|.+.+..   +.
T Consensus        37 ~~~~l~~L~~L~Ls~n-----~l~~~~~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~---~~  103 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNS-----SITDMTGIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD---VT  103 (457)
T ss_dssp             EHHHHTTCCEEECCSS-----CCCCCTTGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC---CT
T ss_pred             ChhHcCCCCEEEccCC-----CcccChhhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee---cC
Confidence            4456899999999999     6655 6778899999999999988764   2  778999999999999876652   33


Q ss_pred             -cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhc
Q 012562          219 -STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNE  297 (461)
Q Consensus       219 -~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  297 (461)
                       .++|++|.+..+.+.   .+. .-..++|++|.++++......+..+++|+.+++..+.. .+.        +  -+..
T Consensus       104 ~l~~L~~L~L~~N~l~---~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~-~~~--------~--~~~~  168 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLT---KLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKK-ITK--------L--DVTP  168 (457)
T ss_dssp             TCTTCCEEECCSSCCS---CCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSC-CCC--------C--CCTT
T ss_pred             CCCcCCEEECCCCcCC---eec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCc-ccc--------c--cccc
Confidence             488999999998852   222 12678999999999777777788899999999843311 000        1  1345


Q ss_pred             CCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562          298 LCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       298 l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      +++++.|+++++.+..+.       +. .+++|+.|.+..+.....  .    +..+++|+.|++..+
T Consensus       169 l~~L~~L~ls~n~l~~l~-------l~-~l~~L~~L~l~~N~l~~~--~----l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITELD-------VS-QNKLLNRLNCDTNNITKL--D----LNQNIQLTFLDCSSN  222 (457)
T ss_dssp             CTTCCEEECCSSCCCCCC-------CT-TCTTCCEEECCSSCCSCC--C----CTTCTTCSEEECCSS
T ss_pred             CCcCCEEECCCCccceec-------cc-cCCCCCEEECcCCcCCee--c----cccCCCCCEEECcCC
Confidence            677888888877655321       22 344566666544432111  1    234455555555444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.85  E-value=1.7e-11  Score=116.76  Aligned_cols=219  Identities=12%  Similarity=0.039  Sum_probs=104.7

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      +++++|++..+......|..+..+++|++|+|+++     .+.. |. ..+++|++|+|.++.+..-  ....+.+++.|
T Consensus        78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-----~l~~l~~-~~~~~L~~L~l~~n~i~~~--~~~~~~~l~~L  149 (332)
T 2ft3_A           78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-----HLVEIPP-NLPSSLVELRIHDNRIRKV--PKGVFSGLRNM  149 (332)
T ss_dssp             TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-----CCCSCCS-SCCTTCCEEECCSSCCCCC--CSGGGSSCSSC
T ss_pred             CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-----cCCccCc-cccccCCEEECCCCccCcc--CHhHhCCCccC
Confidence            35666666444322223444445666666666666     3333 21 1125666666666655432  22235566666


Q ss_pred             cceEEeeeecCC--ceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEEE
Q 012562          200 EKLILKSCSFRD--FKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIF  274 (461)
Q Consensus       200 e~L~L~~c~~~~--~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~  274 (461)
                      +.|++.+|....  .....+...+|+.|.+..+.+.   .+... -.++|++|.++++.....   .+..+++|+.+++.
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~---~l~~~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT---GIPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS---SCCSS-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             CEEECCCCccccCCCCcccccCCccCEEECcCCCCC---ccCcc-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            666666654321  1100111125666666665531   11100 125677777766443332   24556677777663


Q ss_pred             EEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhH---hhhh
Q 012562          275 FDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSI---ISLL  351 (461)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~---~~lL  351 (461)
                      .+..  ...+       ...+..+++|+.|++++|.+..+.     ..+. .+++|+.|++..+.........   ....
T Consensus       226 ~N~l--~~~~-------~~~~~~l~~L~~L~L~~N~l~~lp-----~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~  290 (332)
T 2ft3_A          226 HNQI--RMIE-------NGSLSFLPTLRELHLDNNKLSRVP-----AGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFG  290 (332)
T ss_dssp             SSCC--CCCC-------TTGGGGCTTCCEEECCSSCCCBCC-----TTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred             CCcC--CcCC-------hhHhhCCCCCCEEECCCCcCeecC-----hhhh-cCccCCEEECCCCCCCccChhHccccccc
Confidence            3211  0000       112346677777777777654222     2233 5567777777655432111111   0011


Q ss_pred             ccCCCcceEEEEecc
Q 012562          352 NCSPNLEALTIYFEG  366 (461)
Q Consensus       352 ~~~p~L~~L~l~~~~  366 (461)
                      ...+.|+.|++.+++
T Consensus       291 ~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          291 VKRAYYNGISLFNNP  305 (332)
T ss_dssp             SSSCCBSEEECCSSS
T ss_pred             cccccccceEeecCc
Confidence            124567777776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.83  E-value=4.9e-11  Score=115.02  Aligned_cols=74  Identities=22%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             HHHHHHhcCC-CccEEEEecchhhhhccccccccCCcc-cCcccEEEEEEeCCCc---chhhHhhhhccCCCcceEEEEe
Q 012562          290 ILSKLLNELC-EVKALKLSTAFLRFHFVLEERGFIPNS-FNYLKSLVLSVSMADW---VVPSIISLLNCSPNLEALTIYF  364 (461)
Q Consensus       290 ~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~~~~---~~l~~~~lL~~~p~L~~L~l~~  364 (461)
                      .+...+..++ +|+.|++++|.+...........+. . .++|++|+++.+....   ..+..  ++..+++|+.|++..
T Consensus       186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~--~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS-SIPNHVVSLNLCLNCLHGPSLENLKL--LKDSLKHLQTVYLDY  262 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-HSCTTCCEEECCSSCCCCCCHHHHHH--TTTTTTTCSEEEEEH
T ss_pred             HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh-cCCCCceEEECcCCCCCcHHHHHHHH--HHhcCCCccEEEecc
Confidence            4566667774 8888888888765321111111121 2 2488888887776533   22233  667888888888888


Q ss_pred             cc
Q 012562          365 EG  366 (461)
Q Consensus       365 ~~  366 (461)
                      +.
T Consensus       263 n~  264 (362)
T 3goz_A          263 DI  264 (362)
T ss_dssp             HH
T ss_pred             CC
Confidence            75

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.83  E-value=2.3e-10  Score=113.76  Aligned_cols=193  Identities=17%  Similarity=0.124  Sum_probs=134.0

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      +++++|+|+.+....-.|..+..+++|++|+|++|     .+..   ..+..+++|++|+|.++.+..-  ....+.+++
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~  171 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-----WLTVIPSGAFEYLSKLRELWLRNNPIESI--PSYAFNRVP  171 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----CCSBCCTTTSSSCTTCCEEECCSCCCCEE--CTTTTTTCT
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCC-----cCCccChhhhcccCCCCEEECCCCCccee--CHhHHhcCC
Confidence            57999999766544444456667999999999999     5544   2466799999999999987642  234577899


Q ss_pred             cccceEEeeeecCCceEEEE----ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceE
Q 012562          198 LLEKLILKSCSFRDFKILDI----SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQN  270 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i----~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~  270 (461)
                      +|+.|++.+|.  .+..+..    ..++|+.|.+..|.+.+   +......++|++|+++++.....   .+.++++|+.
T Consensus       172 ~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  246 (452)
T 3zyi_A          172 SLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK  246 (452)
T ss_dssp             TCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTSCCSS---CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred             cccEEeCCCCC--CccccChhhccCCCCCCEEECCCCcccc---cccccccccccEEECcCCcCcccCcccccCccCCCE
Confidence            99999999864  2222211    13789999999888532   22122678999999999765443   4677899999


Q ss_pred             EEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562          271 AFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM  339 (461)
Q Consensus       271 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  339 (461)
                      +++.-+..  ...       ....+.++++|+.|+|++|.+..+..    ..+. .+++|+.|++..+.
T Consensus       247 L~L~~n~l--~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          247 LWVMNSQV--SLI-------ERNAFDGLASLVELNLAHNNLSSLPH----DLFT-PLRYLVELHLHHNP  301 (452)
T ss_dssp             EECTTSCC--CEE-------CTTTTTTCTTCCEEECCSSCCSCCCT----TSST-TCTTCCEEECCSSC
T ss_pred             EEeCCCcC--ceE-------CHHHhcCCCCCCEEECCCCcCCccCh----HHhc-cccCCCEEEccCCC
Confidence            99832211  000       11234578999999999997664332    2233 56799999997764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.81  E-value=5.3e-10  Score=105.41  Aligned_cols=64  Identities=25%  Similarity=0.167  Sum_probs=34.9

Q ss_pred             HHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          293 KLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       293 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      .++..+++|+.|++++|.+.....   ...+. .+++|++|+++.+... .....  + .  ++|+.|++..+.
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~-~l~~L~~L~Ls~N~l~-~ip~~--~-~--~~L~~L~Ls~N~  285 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAG---APSCD-WPSQLNSLNLSFTGLK-QVPKG--L-P--AKLSVLDLSYNR  285 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCC---CSCCC-CCTTCCEEECTTSCCS-SCCSS--C-C--SEEEEEECCSSC
T ss_pred             HHHhcCCCCCEEECCCCcCCcccc---hhhhh-hcCCCCEEECCCCccC-hhhhh--c-c--CCceEEECCCCC
Confidence            445567788888888776553221   01111 3457777777665433 11111  1 1  677777777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.80  E-value=2.4e-10  Score=113.22  Aligned_cols=193  Identities=16%  Similarity=0.105  Sum_probs=131.7

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      +++++|+|+.+....-.+..+..+++|++|+|++|     .+..   ..+..+++|++|+|.++.+..-  ....+.+++
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~  160 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-----RLTTIPNGAFVYLSKLKELWLRNNPIESI--PSYAFNRIP  160 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-----CCSSCCTTTSCSCSSCCEEECCSCCCCEE--CTTTTTTCT
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-----cCCeeCHhHhhccccCceeeCCCCccccc--CHHHhhhCc
Confidence            57999999765433333345556999999999999     5555   2467899999999999877642  233577899


Q ss_pred             cccceEEeeeecCCceEEEE----ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceE
Q 012562          198 LLEKLILKSCSFRDFKILDI----SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQN  270 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i----~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~  270 (461)
                      +|+.|+|.+|..  +..+..    ..++|+.|.+.+|.+.   .+......++|++|+++++.....   .+.++++|+.
T Consensus       161 ~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  235 (440)
T 3zyj_A          161 SLRRLDLGELKR--LSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK  235 (440)
T ss_dssp             TCCEEECCCCTT--CCEECTTTTTTCSSCCEEECTTSCCS---SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCEeCCCCCCC--cceeCcchhhcccccCeecCCCCcCc---cccccCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence            999999998642  222111    1378999999988852   222123678999999998755443   4567889999


Q ss_pred             EEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562          271 AFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM  339 (461)
Q Consensus       271 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  339 (461)
                      +++.-+...  ..       ....+..+++|+.|+|++|.+..+..    ..+. .+++|+.|++..+.
T Consensus       236 L~L~~n~l~--~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          236 LWMIQSQIQ--VI-------ERNAFDNLQSLVEINLAHNNLTLLPH----DLFT-PLHHLERIHLHHNP  290 (440)
T ss_dssp             EECTTCCCC--EE-------CTTSSTTCTTCCEEECTTSCCCCCCT----TTTS-SCTTCCEEECCSSC
T ss_pred             EECCCCcee--EE-------ChhhhcCCCCCCEEECCCCCCCccCh----hHhc-cccCCCEEEcCCCC
Confidence            998432210  00       11234578999999999998764332    2233 56799999997664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.80  E-value=7e-10  Score=102.25  Aligned_cols=65  Identities=15%  Similarity=0.176  Sum_probs=41.4

Q ss_pred             eCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec
Q 012562          136 ELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF  209 (461)
Q Consensus       136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~  209 (461)
                      .+|..+.  ++|++|+|+++     .+..   ..+..+++|++|+|.++.++.-  ...++.+++.|++|+|++|.+
T Consensus        30 ~ip~~~~--~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~i--~~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           30 AIPSNIP--ADTKKLDLQSN-----KLSSLPSKAFHRLTKLRLLYLNDNKLQTL--PAGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             SCCSCCC--TTCSEEECCSS-----CCSCCCTTSSSSCTTCCEEECCSSCCSCC--CTTTTSSCTTCCEEECCSSCC
T ss_pred             ccCCCCC--CCCCEEECcCC-----CCCeeCHHHhcCCCCCCEEECCCCccCee--ChhhhcCCCCCCEEECCCCcC
Confidence            4554433  46788888877     4444   2456677888888877766532  233456677888888877653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.79  E-value=1.6e-10  Score=106.77  Aligned_cols=61  Identities=15%  Similarity=0.076  Sum_probs=32.6

Q ss_pred             cccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          141 LVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      +..+++|++|+|++|     .+.. +....+++|++|+|.++.+++-  ....+.+++.|++|++.+|.
T Consensus        59 l~~l~~L~~L~l~~n-----~l~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           59 IQYLPNVRYLALGGN-----KLHDISALKELTNLTYLILTGNQLQSL--PNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             GGGCTTCCEEECTTS-----CCCCCGGGTTCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECTTSC
T ss_pred             cccCCCCcEEECCCC-----CCCCchhhcCCCCCCEEECCCCccCcc--ChhHhcCCcCCCEEECCCCc
Confidence            445566666666666     4333 3344556666666666555431  22234555666666666554

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.79  E-value=3.9e-09  Score=70.59  Aligned_cols=40  Identities=28%  Similarity=0.455  Sum_probs=34.0

Q ss_pred             CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhc
Q 012562           14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWL   53 (461)
Q Consensus        14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~   53 (461)
                      ..+.++.||+||+.+||++||.+|.++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4567999999999999999999999999999999998643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.77  E-value=3.2e-10  Score=106.84  Aligned_cols=107  Identities=14%  Similarity=0.041  Sum_probs=66.9

Q ss_pred             cccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCc--ccCCCccEEEeceeccccccccC--C----
Q 012562           94 SIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCL--VTCESLEALKLACRQLRMCVLKL--P----  165 (461)
Q Consensus        94 ~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~l~~--~----  165 (461)
                      .++.+.+..... ....+..........++++|++.........|..+  ..+++|++|+|++|     .+..  +    
T Consensus        65 ~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-----~i~~~~~~~~~  138 (310)
T 4glp_A           65 RVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-----SWATGRSWLAE  138 (310)
T ss_dssp             CCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-----CCSSTTSSHHH
T ss_pred             ceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-----cccchhhhhHH
Confidence            456665553321 22344555555555678888887665455566665  56778888888888     4433  1    


Q ss_pred             -CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          166 -FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       166 -~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                       ....+++|++|+|.++.+..  .....+.+++.|+.|+|++|.
T Consensus       139 ~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          139 LQQWLKPGLKVLSIAQAHSPA--FSCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             HHTTBCSCCCEEEEECCSSCC--CCTTSCCCCTTCCEEECCSCT
T ss_pred             HHhhhccCCCEEEeeCCCcch--hhHHHhccCCCCCEEECCCCC
Confidence             12357788888888777654  223345677888888888775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.77  E-value=3.7e-10  Score=118.27  Aligned_cols=180  Identities=16%  Similarity=0.058  Sum_probs=102.3

Q ss_pred             CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceE-EEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCee
Q 012562          171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKI-LDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLV  248 (461)
Q Consensus       171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~-~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~  248 (461)
                      ++|+.|+|.++.+++.  ....+.+++.|+.|++++|.+.+... ..+ ..++|+.|.+..|.+...... ....+|+|+
T Consensus       381 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~  457 (680)
T 1ziw_A          381 SPLHILNLTKNKISKI--ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN-SFALVPSLQ  457 (680)
T ss_dssp             SCCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-TTTTCTTCC
T ss_pred             CcCceEECCCCCCCeE--ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh-hhhcCcccc
Confidence            3555555555544431  22346678999999998875322100 001 136788888887763100000 011468888


Q ss_pred             eEEEecCCCC-----ceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhcccccc---
Q 012562          249 SFNFLASWAP-----DFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEER---  320 (461)
Q Consensus       249 ~L~l~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~---  320 (461)
                      +|.+.++...     +..+..+++|+.+++.-+..  ...+       ...+.++++|+.|++++|.+..+.....+   
T Consensus       458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l--~~i~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  528 (680)
T 1ziw_A          458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI--ANIN-------DDMLEGLEKLEILDLQHNNLARLWKHANPGGP  528 (680)
T ss_dssp             EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC--CCCC-------TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred             cchhccccccccccCCcccccCCCCCEEECCCCCC--CcCC-------hhhhccccccCEEeCCCCCccccchhhccCCc
Confidence            8888774321     23356778888888843322  1111       12345678888999888876654332211   


Q ss_pred             -ccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          321 -GFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       321 -~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                       ..+. .+++|+.|+++.+... .....  .+..+++|+.|++..+.
T Consensus       529 ~~~~~-~l~~L~~L~L~~N~l~-~i~~~--~~~~l~~L~~L~Ls~N~  571 (680)
T 1ziw_A          529 IYFLK-GLSHLHILNLESNGFD-EIPVE--VFKDLFELKIIDLGLNN  571 (680)
T ss_dssp             CCTTT-TCTTCCEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSC
T ss_pred             chhhc-CCCCCCEEECCCCCCC-CCCHH--HcccccCcceeECCCCC
Confidence             1123 5668888888766443 11122  45778888888887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.77  E-value=2.2e-09  Score=100.00  Aligned_cols=77  Identities=13%  Similarity=0.059  Sum_probs=39.2

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE  200 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le  200 (461)
                      ++++|++.... ...+| .+..+++|++|+|++|     .+.. +....+++|++|+|.++.+++-   .. +..++.|+
T Consensus        47 ~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n-----~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~  115 (291)
T 1h6t_A           47 SIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-----KLTDIKPLANLKNLGWLFLDENKVKDL---SS-LKDLKKLK  115 (291)
T ss_dssp             TCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCCCG---GG-GTTCTTCC
T ss_pred             cccEEEccCCC-cccCh-hHhcCCCCCEEEccCC-----ccCCCcccccCCCCCEEECCCCcCCCC---hh-hccCCCCC
Confidence            45555553321 11222 2444566666666666     4433 2245566666666666655432   11 45566666


Q ss_pred             ceEEeeeec
Q 012562          201 KLILKSCSF  209 (461)
Q Consensus       201 ~L~L~~c~~  209 (461)
                      .|++++|.+
T Consensus       116 ~L~L~~n~i  124 (291)
T 1h6t_A          116 SLSLEHNGI  124 (291)
T ss_dssp             EEECTTSCC
T ss_pred             EEECCCCcC
Confidence            666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.76  E-value=3.8e-10  Score=105.18  Aligned_cols=104  Identities=13%  Similarity=-0.001  Sum_probs=53.7

Q ss_pred             ccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCC
Q 012562          142 VTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTS  221 (461)
Q Consensus       142 ~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~  221 (461)
                      ..+++|+.++++++     .+......-.++|++|+|.++.++.-  ....+.+++.|+.|+|++|.+.++... ...++
T Consensus         7 ~~l~~l~~l~~~~~-----~l~~ip~~~~~~l~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~   78 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-----NLTALPPDLPKDTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV   78 (290)
T ss_dssp             ECSTTCCEEECTTS-----CCSSCCSCCCTTCCEEECTTSCCSEE--EGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred             cccCCccEEECCCC-----CCCcCCCCCCCCCCEEEcCCCcCCcc--CHHHhhcCCCCCEEECCCCccCcccCC-CCCCc
Confidence            34566777777666     44441111235677777776665432  223355667777777777654332211 12255


Q ss_pred             cCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCC
Q 012562          222 LKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASW  256 (461)
Q Consensus       222 L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~  256 (461)
                      |+.|.+..+.+   ..+. .....++|++|.++++.
T Consensus        79 L~~L~Ls~N~l---~~l~~~~~~l~~L~~L~l~~N~  111 (290)
T 1p9a_G           79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFNR  111 (290)
T ss_dssp             CCEEECCSSCC---SSCCCCTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcC---CcCchhhccCCCCCEEECCCCc
Confidence            66666665553   1111 11145566666666643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.75  E-value=1.3e-08  Score=104.47  Aligned_cols=229  Identities=16%  Similarity=0.095  Sum_probs=153.2

Q ss_pred             hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562          120 RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       120 ~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      ..+++.|+++... ...+|..+.  ++|++|+|++|     .+.. |.  .+++|++|+|++|.++.-   ..   .+++
T Consensus        39 ~~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N-----~l~~lp~--~l~~L~~L~Ls~N~l~~l---p~---~l~~  102 (622)
T 3g06_A           39 NNGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-----NLTSLPA--LPPELRTLEVSGNQLTSL---PV---LPPG  102 (622)
T ss_dssp             HHCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSC-----CCSCCCC--CCTTCCEEEECSCCCSCC---CC---CCTT
T ss_pred             CCCCcEEEecCCC-cCccChhhC--CCCcEEEecCC-----CCCCCCC--cCCCCCEEEcCCCcCCcC---CC---CCCC
Confidence            3468888886554 337777665  79999999999     6655 43  688999999999987642   22   6799


Q ss_pred             ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEee
Q 012562          199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDII  278 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~  278 (461)
                      |+.|+|++|.+.++..   ..++|+.|.+.+|.+.   .+.  ...++|++|.++++....+. ...++|+.+++..+..
T Consensus       103 L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~---~lp--~~l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          103 LLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT---SLP--VLPPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQL  173 (622)
T ss_dssp             CCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS---CCC--CCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCC
T ss_pred             CCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC---cCC--CCCCCCCEEECcCCcCCCcC-CccCCCCEEECCCCCC
Confidence            9999999987665433   4578999999988752   222  13589999999986554422 2456788887743221


Q ss_pred             cCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcc
Q 012562          279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLE  358 (461)
Q Consensus       279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~  358 (461)
                                   ..+-..+++|+.|++++|.+..         +|..+++|+.|.+..+....       +-...++|+
T Consensus       174 -------------~~l~~~~~~L~~L~Ls~N~l~~---------l~~~~~~L~~L~L~~N~l~~-------l~~~~~~L~  224 (622)
T 3g06_A          174 -------------TSLPMLPSGLQELSVSDNQLAS---------LPTLPSELYKLWAYNNRLTS-------LPALPSGLK  224 (622)
T ss_dssp             -------------SCCCCCCTTCCEEECCSSCCSC---------CCCCCTTCCEEECCSSCCSS-------CCCCCTTCC
T ss_pred             -------------CCCcccCCCCcEEECCCCCCCC---------CCCccchhhEEECcCCcccc-------cCCCCCCCC
Confidence                         1111356889999999987553         22244689999987664321       122358899


Q ss_pred             eEEEEeccCCCccccccCcCccccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceEEEEc
Q 012562          359 ALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKLSFSW  421 (461)
Q Consensus       359 ~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~~i~~  421 (461)
                      .|++..+.-.       .+ + ...++|+.+.+.+  +..-..          ..+.|+.+.+..
T Consensus       225 ~L~Ls~N~L~-------~l-p-~~l~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~Ls~  270 (622)
T 3g06_A          225 ELIVSGNRLT-------SL-P-VLPSELKELMVSGNRLTSLPM----------LPSGLLSLSVYR  270 (622)
T ss_dssp             EEECCSSCCS-------CC-C-CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCS
T ss_pred             EEEccCCccC-------cC-C-CCCCcCcEEECCCCCCCcCCc----------ccccCcEEeCCC
Confidence            9999876531       13 2 2447788887763  221111          567888888763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.73  E-value=1.2e-09  Score=111.68  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=43.3

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---C-CccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      +++++|+++.+. ...+|..  .+++|++|+|++|     .+..   | .+..+++|++|+|.++.+... .+    .++
T Consensus       100 ~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N-----~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~----~~l  166 (562)
T 3a79_B          100 QDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFN-----DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DL----LPV  166 (562)
T ss_dssp             TTCCEEECTTSC-CCEECSC--CCTTCSEEECCSS-----CCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TT----GGG
T ss_pred             CCCCEEECCCCc-CCccCcc--ccccCCEEECCCC-----CccccCchHhhcccCcccEEecCCCccccC-ch----hhh
Confidence            467777775443 2255655  5677777777777     4332   2 355677777777777666543 22    233


Q ss_pred             ccc--cceEEeeee
Q 012562          197 RLL--EKLILKSCS  208 (461)
Q Consensus       197 p~L--e~L~L~~c~  208 (461)
                      +.|  +.|++++|.
T Consensus       167 ~~L~L~~L~L~~n~  180 (562)
T 3a79_B          167 AHLHLSCILLDLVS  180 (562)
T ss_dssp             TTSCEEEEEEEESS
T ss_pred             hhceeeEEEeeccc
Confidence            344  666666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.73  E-value=3e-10  Score=118.96  Aligned_cols=228  Identities=15%  Similarity=0.099  Sum_probs=115.4

Q ss_pred             cCCeEEEEEEcc-eeeeCCCCccc---CCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHh
Q 012562          121 RNVQVFDLTVYG-EVTELPHCLVT---CESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFV  193 (461)
Q Consensus       121 ~~l~~L~l~~~~-~~~~lp~~l~~---~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~  193 (461)
                      +++++|+++.+. ....++...+.   .++|+.|++++|     .+..   ..+..+++|+.|+|.++.+.+. .....+
T Consensus       353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~  426 (680)
T 1ziw_A          353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-----KISKIESDAFSWLGHLEVLDLGLNEIGQE-LTGQEW  426 (680)
T ss_dssp             TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCEEE-CCSGGG
T ss_pred             cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-----CCCeEChhhhhCCCCCCEEeCCCCcCccc-cCcccc
Confidence            468888874321 12223332221   357888888877     4333   2455677888888887766542 112345


Q ss_pred             hcCccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCCce---eeeCCCCc
Q 012562          194 SSRRLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAPDF---AFEDLDSL  268 (461)
Q Consensus       194 ~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~---~~~~~~~L  268 (461)
                      .+++.|++|++++|...+...-.+ ..++|+.|.+.++.....+..... -.+++|++|+++++.....   .+..+++|
T Consensus       427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L  506 (680)
T 1ziw_A          427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL  506 (680)
T ss_dssp             TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc
Confidence            677888888887765211110000 136677777776653111111111 1456777777776543332   24556677


Q ss_pred             eEEEEEEEeecC---CCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchh
Q 012562          269 QNAFIFFDIIDR---DERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVP  345 (461)
Q Consensus       269 ~~l~l~~~~~~~---~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l  345 (461)
                      +.+++.-+....   ...|.    .....+.++++|+.|++++|.+..+..    ..+. .+++|+.|+++.+.... ..
T Consensus       507 ~~L~Ls~N~l~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~-~l~~L~~L~Ls~N~l~~-l~  576 (680)
T 1ziw_A          507 EILDLQHNNLARLWKHANPG----GPIYFLKGLSHLHILNLESNGFDEIPV----EVFK-DLFELKIIDLGLNNLNT-LP  576 (680)
T ss_dssp             CEEECCSSCCGGGGSTTSTT----SCCCTTTTCTTCCEEECCSSCCCCCCT----TTTT-TCTTCCEEECCSSCCCC-CC
T ss_pred             CEEeCCCCCccccchhhccC----CcchhhcCCCCCCEEECCCCCCCCCCH----HHcc-cccCcceeECCCCCCCc-CC
Confidence            777763321100   00000    000124556777777777766543221    1222 44567777775553321 11


Q ss_pred             hHhhhhccCCCcceEEEEecc
Q 012562          346 SIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       346 ~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      ..  .+..+++|+.|++..+.
T Consensus       577 ~~--~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          577 AS--VFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             TT--TTTTCTTCCEEECTTSC
T ss_pred             Hh--HhCCCCCCCEEECCCCc
Confidence            11  34566677777666553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.70  E-value=8e-10  Score=102.70  Aligned_cols=197  Identities=17%  Similarity=0.125  Sum_probs=113.0

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEE-EcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVE-FLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~-~~~~~~l~~l~~~c  196 (461)
                      +++++|+++......-.+..+..+++|++|+|+++     .+..   ..+..+++|++|+|.++. +..  .....+.++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~~l~~--~~~~~~~~l  104 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-----VLARIDAAAFTGLALLEQLDLSDNAQLRS--VDPATFHGL  104 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSCTTCCC--CCTTTTTTC
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-----ccceeCHhhcCCccCCCEEeCCCCCCccc--cCHHHhcCC
Confidence            35677777444322222234555777888887777     4333   245567777888777765 432  112335667


Q ss_pred             ccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEE
Q 012562          197 RLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAF  272 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~  272 (461)
                      +.|++|++.+|.+.+...-.+. .++|++|.+..+.+..... ...-.+++|++|.++++......   +..+++|+.++
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence            7788887777754432211111 3677777777766421110 00114678888888875544332   45677888888


Q ss_pred             EEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562          273 IFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM  339 (461)
Q Consensus       273 l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  339 (461)
                      +.-+..  ...       ....+..+++|+.|++++|.+..+..    ..+. .+++|+.|++..+.
T Consensus       184 l~~n~l--~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~-~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          184 LHQNRV--AHV-------HPHAFRDLGRLMTLYLFANNLSALPT----EALA-PLRALQYLRLNDNP  236 (285)
T ss_dssp             CCSSCC--CEE-------CTTTTTTCTTCCEEECCSSCCSCCCH----HHHT-TCTTCCEEECCSSC
T ss_pred             CCCCcc--ccc-------CHhHccCcccccEeeCCCCcCCcCCH----HHcc-cCcccCEEeccCCC
Confidence            743211  000       12234567899999999987664322    1233 56689999997664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.66  E-value=3.7e-09  Score=108.39  Aligned_cols=147  Identities=18%  Similarity=0.131  Sum_probs=76.1

Q ss_pred             cccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEec
Q 012562          141 LVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISS  219 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~  219 (461)
                      +..+++|+.|+|++|     .+.. +.+..+++|+.|+|.++.+.+-   . .+..++.|+.|+|++|.+.++..     
T Consensus        61 l~~l~~L~~L~Ls~N-----~l~~~~~l~~l~~L~~L~Ls~N~l~~l---~-~l~~l~~L~~L~Ls~N~l~~l~~-----  126 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGN-----KLTDIKPLTNLKNLGWLFLDENKIKDL---S-SLKDLKKLKSLSLEHNGISDING-----  126 (605)
T ss_dssp             GGGCTTCCEEECTTS-----CCCCCGGGGGCTTCCEEECCSSCCCCC---T-TSTTCTTCCEEECTTSCCCCCGG-----
T ss_pred             HccCCCCCEEEeeCC-----CCCCChhhccCCCCCEEECcCCCCCCC---h-hhccCCCCCEEEecCCCCCCCcc-----
Confidence            444556666666655     4333 2244555666666655555432   1 24455555555555554332210     


Q ss_pred             CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcC
Q 012562          220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNEL  298 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l  298 (461)
                                           ...+++|+.|.++++..... .+..+++|+.++++-+..  ..        +.. +..+
T Consensus       127 ---------------------l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l--~~--------~~~-l~~l  174 (605)
T 1m9s_A          127 ---------------------LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SD--------IVP-LAGL  174 (605)
T ss_dssp             ---------------------GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCC--CC--------CGG-GTTC
T ss_pred             ---------------------ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcC--CC--------chh-hccC
Confidence                                 11345555555555333222 234455555555532211  00        111 5678


Q ss_pred             CCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC
Q 012562          299 CEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA  340 (461)
Q Consensus       299 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  340 (461)
                      ++|+.|+|++|.+..+      ..+. .+++|+.|++..+..
T Consensus       175 ~~L~~L~Ls~N~i~~l------~~l~-~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          175 TKLQNLYLSKNHISDL------RALA-GLKNLDVLELFSQEC  209 (605)
T ss_dssp             TTCCEEECCSSCCCBC------GGGT-TCTTCSEEECCSEEE
T ss_pred             CCCCEEECcCCCCCCC------hHHc-cCCCCCEEEccCCcC
Confidence            8899999998876543      1233 566899999876643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.66  E-value=2.2e-09  Score=93.87  Aligned_cols=80  Identities=15%  Similarity=0.123  Sum_probs=46.9

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      +++++|++.... ...+| .+..+++|++|++++|     .+.. +.+..+++|++|+|.++.+++.  ....+.++|.|
T Consensus        44 ~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-----~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L  114 (197)
T 4ezg_A           44 NSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-----HATNYNPISGLSNLERLRIMGKDVTSD--KIPNLSGLTSL  114 (197)
T ss_dssp             HTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-----CCSCCGGGTTCTTCCEEEEECTTCBGG--GSCCCTTCTTC
T ss_pred             CCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-----CCCcchhhhcCCCCCEEEeECCccCcc--cChhhcCCCCC
Confidence            356667665443 22445 4556677777777776     4444 3455667777777776666542  12224566777


Q ss_pred             cceEEeeeec
Q 012562          200 EKLILKSCSF  209 (461)
Q Consensus       200 e~L~L~~c~~  209 (461)
                      +.|++++|.+
T Consensus       115 ~~L~Ls~n~i  124 (197)
T 4ezg_A          115 TLLDISHSAH  124 (197)
T ss_dssp             CEEECCSSBC
T ss_pred             CEEEecCCcc
Confidence            7777776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.65  E-value=6.6e-10  Score=107.06  Aligned_cols=225  Identities=15%  Similarity=0.066  Sum_probs=126.0

Q ss_pred             CCCCcccCCCccEEEeceeccccccccCC-------CccccC-cccEEEeeeEEEcCh--hhHHHHhhcC-ccccceEEe
Q 012562          137 LPHCLVTCESLEALKLACRQLRMCVLKLP-------FSVGFS-RLKSLDLHNVEFLDH--NLLHKFVSSR-RLLEKLILK  205 (461)
Q Consensus       137 lp~~l~~~~~L~~L~L~~~~~~~~~l~~~-------~~~~l~-~L~~L~L~~~~~~~~--~~l~~l~~~c-p~Le~L~L~  205 (461)
                      +|..+...++|++|+|++|     .+...       .+..++ +|++|+|+++.+++.  ..+..++..+ +.|++|+|+
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n-----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls   88 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLN-----NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS   88 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTS-----CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred             HHHHHhCCCCceEEEccCC-----CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence            3333334567999999999     55541       234577 899999999988765  2344444444 899999999


Q ss_pred             eeecCCceEEEE----e-c-CCcCeEEEeccCCCCCCCeEEE--E-e-cCCeeeEEEecCCCCceeeeCCCCceEEEEEE
Q 012562          206 SCSFRDFKILDI----S-S-TSLKSLTLDNFGGDESGNYKVK--I-A-CPNLVSFNFLASWAPDFAFEDLDSLQNAFIFF  275 (461)
Q Consensus       206 ~c~~~~~~~~~i----~-~-~~L~~L~l~~~~~~~~~~~~~~--~-~-~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~  275 (461)
                      +|.+.+.....+    . . ++|++|.+..|.+.+.+...+.  + . .++|++|+++++.....               
T Consensus        89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---------------  153 (362)
T 3goz_A           89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK---------------  153 (362)
T ss_dssp             SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS---------------
T ss_pred             CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH---------------
Confidence            987543221111    0 1 5677777776663111110000  0 0 13666666665322210               


Q ss_pred             EeecCCCCchhhHHHHHHHHhcCC-CccEEEEecchhhhhccccccccCCccc-CcccEEEEEEeCCCc-chhhHhhhhc
Q 012562          276 DIIDRDERDNESCHILSKLLNELC-EVKALKLSTAFLRFHFVLEERGFIPNSF-NYLKSLVLSVSMADW-VVPSIISLLN  352 (461)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~-~~l~~~~lL~  352 (461)
                                 ....+...+..++ +++.|++++|.+...........+. .+ .+|++|+++.+.... ........+.
T Consensus       154 -----------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          154 -----------SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA-SIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             -----------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             -----------HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence                       0334666677776 9999999999875432211111222 34 499999998776522 2211111444


Q ss_pred             c-CCCcceEEEEeccCCCccccccCcCccccccceeEEEEEee
Q 012562          353 C-SPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHV  394 (461)
Q Consensus       353 ~-~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~  394 (461)
                      . +++|+.|++..+.-....-+.... .....++|+.+.+.+-
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~-~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKL-LKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHH-TTTTTTTCSEEEEEHH
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHH-HHhcCCCccEEEeccC
Confidence            4 679999999987632100000000 1113467899888843

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.65  E-value=8.3e-10  Score=101.76  Aligned_cols=175  Identities=19%  Similarity=0.144  Sum_probs=103.8

Q ss_pred             cCCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      .++++|+++... ...+|. .+..+++|++|+|+++     .+.. +  .+..+++|++|+|.++.+..-  ....+.++
T Consensus        37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-----~l~~i~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l  108 (270)
T 2o6q_A           37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-----KLQTLPAGIFKELKNLETLWVTDNKLQAL--PIGVFDQL  108 (270)
T ss_dssp             TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-----CCSCCCTTTTSSCTTCCEEECCSSCCCCC--CTTTTTTC
T ss_pred             CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-----ccCeeChhhhcCCCCCCEEECCCCcCCcC--CHhHcccc
Confidence            468888886554 234554 5567999999999999     5544 2  346789999999999887653  23456788


Q ss_pred             ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEE
Q 012562          197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFF  275 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~  275 (461)
                      +.|+.|++.+|.+.+...-.+ ..++|++|.+..+.+...... ..-.+++|++|.++++.....               
T Consensus       109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~---------------  172 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNNQLKRV---------------  172 (270)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCC---------------
T ss_pred             cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-HccCCcccceeEecCCcCcEe---------------
Confidence            999999999876443221111 124555555555543110000 001234555555544322111               


Q ss_pred             EeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562          276 DIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM  339 (461)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  339 (461)
                              +       ...+..+++|+.|++++|.+..+..    ..+. .+++|+.|++..+.
T Consensus       173 --------~-------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          173 --------P-------EGAFDKLTELKTLKLDNNQLKRVPE----GAFD-SLEKLKMLQLQENP  216 (270)
T ss_dssp             --------C-------TTTTTTCTTCCEEECCSSCCSCCCT----TTTT-TCTTCCEEECCSSC
T ss_pred             --------C-------hhHhccCCCcCEEECCCCcCCcCCH----HHhc-cccCCCEEEecCCC
Confidence                    0       0123457888888888887653322    2233 56688888887664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.63  E-value=9.4e-09  Score=95.75  Aligned_cols=165  Identities=18%  Similarity=0.172  Sum_probs=104.9

Q ss_pred             cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cC
Q 012562          143 TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-ST  220 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~  220 (461)
                      .+++|++|+++++     .+.. +....+++|++|+|.++.+++-   .. +.++++|+.|++++|.+.++..  +. .+
T Consensus        44 ~l~~L~~L~l~~~-----~i~~~~~~~~l~~L~~L~L~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~  112 (291)
T 1h6t_A           44 ELNSIDQIIANNS-----DIKSVQGIQYLPNVTKLFLNGNKLTDI---KP-LANLKNLGWLFLDENKVKDLSS--LKDLK  112 (291)
T ss_dssp             HHHTCCEEECTTS-----CCCCCTTGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCCGGG--GTTCT
T ss_pred             hcCcccEEEccCC-----CcccChhHhcCCCCCEEEccCCccCCC---cc-cccCCCCCEEECCCCcCCCChh--hccCC
Confidence            4778999999998     6655 5677899999999999988764   22 7889999999999987655432  22 37


Q ss_pred             CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCC
Q 012562          221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELC  299 (461)
Q Consensus       221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~  299 (461)
                      +|++|.+.+|.+.+   +.....+++|++|.++++..... .+..+++|+.+++..+..  .+        +.. +..++
T Consensus       113 ~L~~L~L~~n~i~~---~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l--~~--------~~~-l~~l~  178 (291)
T 1h6t_A          113 KLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SD--------IVP-LAGLT  178 (291)
T ss_dssp             TCCEEECTTSCCCC---CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC--CC--------CGG-GTTCT
T ss_pred             CCCEEECCCCcCCC---ChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcc--cc--------chh-hcCCC
Confidence            89999999887522   21112578899999888654432 234556666666632211  00        111 44566


Q ss_pred             CccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562          300 EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM  339 (461)
Q Consensus       300 ~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  339 (461)
                      +|+.|++++|.+..+.      .+. .+++|+.|++..+.
T Consensus       179 ~L~~L~L~~N~i~~l~------~l~-~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          179 KLQNLYLSKNHISDLR------ALA-GLKNLDVLELFSQE  211 (291)
T ss_dssp             TCCEEECCSSCCCBCG------GGT-TCTTCSEEEEEEEE
T ss_pred             ccCEEECCCCcCCCCh------hhc-cCCCCCEEECcCCc
Confidence            6666666666544221      122 44566666665553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.62  E-value=2.9e-09  Score=96.13  Aligned_cols=55  Identities=13%  Similarity=-0.063  Sum_probs=29.8

Q ss_pred             CCccEEEEecch-hhhhccccccccCCccc-CcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEe
Q 012562          299 CEVKALKLSTAF-LRFHFVLEERGFIPNSF-NYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYF  364 (461)
Q Consensus       299 ~~l~~L~l~~~~-~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~  364 (461)
                      ++++.|++.+|. +..+..    ..+. .+ ++|+.|+++.+....  ++.    ..+++|+.|.+..
T Consensus       179 ~~L~~L~L~~n~~l~~i~~----~~~~-~l~~~L~~L~l~~N~l~~--l~~----~~~~~L~~L~l~~  235 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDK----DAFG-GVYSGPSLLDVSQTSVTA--LPS----KGLEHLKELIARN  235 (239)
T ss_dssp             CEEEEEECTTCTTCCEECT----TTTT-TCSBCCSEEECTTCCCCC--CCC----TTCTTCSEEECTT
T ss_pred             CCCCEEEcCCCCCcccCCH----HHhh-ccccCCcEEECCCCcccc--CCh----hHhccCceeeccC
Confidence            567788887773 543221    2222 44 577888775553311  111    1456777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.61  E-value=5e-09  Score=96.77  Aligned_cols=211  Identities=15%  Similarity=0.103  Sum_probs=117.4

Q ss_pred             CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeE--EEEecCCe
Q 012562          171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYK--VKIACPNL  247 (461)
Q Consensus       171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L  247 (461)
                      ++|++|+|.++.+++-  ....+.+++.|+.|++++|.+.+...-.+. .++|++|.+.++.+.   .+.  ..-.+++|
T Consensus        28 ~~l~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEE--CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTC
T ss_pred             CCccEEECCCCccccc--CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC---ccChhhhcCCccc
Confidence            5799999999987653  222467899999999999864322111111 378999999988741   111  01257899


Q ss_pred             eeEEEecCCCCc---eeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCC
Q 012562          248 VSFNFLASWAPD---FAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIP  324 (461)
Q Consensus       248 ~~L~l~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~  324 (461)
                      ++|.+.++....   ..+..+++|+.+++..+......        +...+..+++|+.|++++|.+..+..    ..+.
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~  170 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSSNKIQSIYC----TDLR  170 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC--------CCGGGGGCTTCCEEECCSSCCCEECG----GGGH
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceec--------CchhhccCCCCCEEECCCCCCCcCCH----HHhh
Confidence            999998854432   24667788888887433221000        12335567888888888876553321    1122


Q ss_pred             cccCccc----EEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEE--eecC
Q 012562          325 NSFNYLK----SLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELI--HVAG  396 (461)
Q Consensus       325 ~~~~~L~----~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~--~~~g  396 (461)
                       .+.+|+    +|+++.+........   . ...++|+.|++..+.-.       ..++.  ..+++|+.+.+.  .+.+
T Consensus       171 -~l~~L~~l~l~L~ls~n~l~~~~~~---~-~~~~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          171 -VLHQMPLLNLSLDLSLNPMNFIQPG---A-FKEIRLKELALDTNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             -HHHTCTTCCEEEECCSSCCCEECTT---S-SCSCCEEEEECCSSCCS-------CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             -hhhhccccceeeecCCCcccccCcc---c-cCCCcccEEECCCCcee-------ecCHhHhcccccccEEEccCCcccc
Confidence             333444    455544432211111   1 22347777777765421       11111  124566666666  3444


Q ss_pred             ChhHHHHHHHHHhc
Q 012562          397 DENELELVRFLLKN  410 (461)
Q Consensus       397 ~~~e~~~~~~ll~~  410 (461)
                      ....+.++...++.
T Consensus       239 ~c~~l~~l~~~~~~  252 (276)
T 2z62_A          239 SCPRIDYLSRWLNK  252 (276)
T ss_dssp             CTTTTHHHHHHHHH
T ss_pred             cCCchHHHHHHHHh
Confidence            44444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.61  E-value=8.9e-09  Score=92.93  Aligned_cols=190  Identities=12%  Similarity=0.013  Sum_probs=100.4

Q ss_pred             CccEEEeceeccccccccC---CCccccCcccEEEeeeEE-EcChhhHHHHhhcCccccceEEee-eecCCceEEEE-ec
Q 012562          146 SLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVE-FLDHNLLHKFVSSRRLLEKLILKS-CSFRDFKILDI-SS  219 (461)
Q Consensus       146 ~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~-~~~~~~l~~l~~~cp~Le~L~L~~-c~~~~~~~~~i-~~  219 (461)
                      +|++|+|+++     .+..   ..+..+++|++|+|.++. ++.-  -...+.+++.|+.|++.+ +.+..+..-.+ ..
T Consensus        32 ~l~~L~l~~n-----~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i--~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l  104 (239)
T 2xwt_C           32 STQTLKLIET-----HLRTIPSHAFSNLPNISRIYVSIDVTLQQL--ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL  104 (239)
T ss_dssp             TCCEEEEESC-----CCSEECTTTTTTCTTCCEEEEECCSSCCEE--CTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred             cccEEEEeCC-----cceEECHHHccCCCCCcEEeCCCCCCccee--CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence            7777877777     4433   245567777777777764 4321  112356677777777776 43322111011 12


Q ss_pred             CCcCeEEEeccCCCCCCCeEEEEecCCee---eEEEecC-CCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHH
Q 012562          220 TSLKSLTLDNFGGDESGNYKVKIACPNLV---SFNFLAS-WAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLL  295 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~---~L~l~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l  295 (461)
                      ++|++|.+.++.+..   +...-..++|+   +|.++++ .....                       +       ...+
T Consensus       105 ~~L~~L~l~~n~l~~---lp~~~~l~~L~~L~~L~l~~N~~l~~i-----------------------~-------~~~~  151 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKM---FPDLTKVYSTDIFFILEITDNPYMTSI-----------------------P-------VNAF  151 (239)
T ss_dssp             TTCCEEEEEEECCCS---CCCCTTCCBCCSEEEEEEESCTTCCEE-----------------------C-------TTTT
T ss_pred             CCCCEEeCCCCCCcc---ccccccccccccccEEECCCCcchhhc-----------------------C-------cccc
Confidence            455555555554311   11001223333   5555443 11110                       0       0123


Q ss_pred             hcCCCcc-EEEEecchhhhhccccccccCCcccCcccEEEEEEeC-CCcchhhHhhhhccC-CCcceEEEEeccCCCccc
Q 012562          296 NELCEVK-ALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM-ADWVVPSIISLLNCS-PNLEALTIYFEGEDCDDW  372 (461)
Q Consensus       296 ~~l~~l~-~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~l~~~~lL~~~-p~L~~L~l~~~~~~~~~~  372 (461)
                      .++++++ .|+++++.+..+...    .+. . .+|++|++..+. .. .....  .+..+ ++|+.|++..+.-     
T Consensus       152 ~~l~~L~~~L~l~~n~l~~i~~~----~~~-~-~~L~~L~L~~n~~l~-~i~~~--~~~~l~~~L~~L~l~~N~l-----  217 (239)
T 2xwt_C          152 QGLCNETLTLKLYNNGFTSVQGY----AFN-G-TKLDAVYLNKNKYLT-VIDKD--AFGGVYSGPSLLDVSQTSV-----  217 (239)
T ss_dssp             TTTBSSEEEEECCSCCCCEECTT----TTT-T-CEEEEEECTTCTTCC-EECTT--TTTTCSBCCSEEECTTCCC-----
T ss_pred             cchhcceeEEEcCCCCCcccCHh----hcC-C-CCCCEEEcCCCCCcc-cCCHH--HhhccccCCcEEECCCCcc-----
Confidence            4678899 999988876533221    122 2 588999887663 32 22122  45677 9999999887543     


Q ss_pred             cccCcCccccccceeEEEEE
Q 012562          373 KISNKSIFCLTCHLKTVELI  392 (461)
Q Consensus       373 ~~~~~~~~~~~~~Lk~v~i~  392 (461)
                        ... +...+.+|+.+.+.
T Consensus       218 --~~l-~~~~~~~L~~L~l~  234 (239)
T 2xwt_C          218 --TAL-PSKGLEHLKELIAR  234 (239)
T ss_dssp             --CCC-CCTTCTTCSEEECT
T ss_pred             --ccC-ChhHhccCceeecc
Confidence              123 22245677777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.61  E-value=1.1e-09  Score=101.14  Aligned_cols=189  Identities=16%  Similarity=0.142  Sum_probs=124.0

Q ss_pred             cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecC
Q 012562          143 TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SST  220 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~  220 (461)
                      .+++|+.|.++++     .+.. +....+++|++|+|.++.+.+-   . .+..++.|++|++++|.+.+...-.+ ..+
T Consensus        39 ~l~~L~~L~l~~~-----~i~~~~~l~~l~~L~~L~l~~n~l~~~---~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  109 (272)
T 3rfs_A           39 ELNSIDQIIANNS-----DIKSVQGIQYLPNVRYLALGGNKLHDI---S-ALKELTNLTYLILTGNQLQSLPNGVFDKLT  109 (272)
T ss_dssp             HHTTCCEEECTTS-----CCCCCTTGGGCTTCCEEECTTSCCCCC---G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cccceeeeeeCCC-----CcccccccccCCCCcEEECCCCCCCCc---h-hhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence            4678888888888     6655 5677889999999998887653   2 46788999999998886544322111 137


Q ss_pred             CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhc
Q 012562          221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNE  297 (461)
Q Consensus       221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  297 (461)
                      +|++|.+..|.+..... ...-.+++|++|.++++......   +..+++|+.+++..+..  ...+       ...+..
T Consensus       110 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~-------~~~~~~  179 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL--QSLP-------EGVFDK  179 (272)
T ss_dssp             TCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCC-------TTTTTT
T ss_pred             CCCEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc--CccC-------HHHhcC
Confidence            88889988887521111 00124688999999886544332   46678888888854322  1111       123457


Q ss_pred             CCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562          298 LCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       298 l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      +++|+.|++++|.+..+..    ..+. .+++|+.|++..+.          +...||+|+.|.+..+
T Consensus       180 l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~l~~N~----------~~~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLKSVPD----GVFD-RLTSLQYIWLHDNP----------WDCTCPGIRYLSEWIN  232 (272)
T ss_dssp             CTTCCEEECCSSCCSCCCT----TTTT-TCTTCCEEECCSSC----------BCCCTTTTHHHHHHHH
T ss_pred             CccCCEEECCCCcCCccCH----HHHh-CCcCCCEEEccCCC----------ccccCcHHHHHHHHHH
Confidence            8899999999987663322    2233 66799999997663          3345777777765544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.57  E-value=1.7e-08  Score=92.54  Aligned_cols=146  Identities=16%  Similarity=0.130  Sum_probs=87.7

Q ss_pred             cccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEec
Q 012562          141 LVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISS  219 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~  219 (461)
                      +..+++|++|+++++     .+.. +....+++|++|+|.++.+++-   .. +.+++.|+.|++++|.+.++....  .
T Consensus        37 ~~~l~~L~~L~l~~n-----~i~~l~~l~~l~~L~~L~L~~N~i~~~---~~-l~~l~~L~~L~L~~N~l~~l~~~~--~  105 (263)
T 1xeu_A           37 QKELSGVQNFNGDNS-----NIQSLAGMQFFTNLKELHLSHNQISDL---SP-LKDLTKLEELSVNRNRLKNLNGIP--S  105 (263)
T ss_dssp             HHHHTTCSEEECTTS-----CCCCCTTGGGCTTCCEEECCSSCCCCC---GG-GTTCSSCCEEECCSSCCSCCTTCC--C
T ss_pred             hhhcCcCcEEECcCC-----CcccchHHhhCCCCCEEECCCCccCCC---hh-hccCCCCCEEECCCCccCCcCccc--c
Confidence            345788999999988     6555 5667888999999998888764   22 778899999999888754432211  1


Q ss_pred             CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCC
Q 012562          220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELC  299 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~  299 (461)
                      ++|+.|.+.+|.+.+   +...-.+++|+.|+++++.....                                ..+..++
T Consensus       106 ~~L~~L~L~~N~l~~---~~~l~~l~~L~~L~Ls~N~i~~~--------------------------------~~l~~l~  150 (263)
T 1xeu_A          106 ACLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKSI--------------------------------VMLGFLS  150 (263)
T ss_dssp             SSCCEEECCSSCCSB---SGGGTTCTTCCEEECTTSCCCBC--------------------------------GGGGGCT
T ss_pred             CcccEEEccCCccCC---ChhhcCcccccEEECCCCcCCCC--------------------------------hHHccCC
Confidence            556666666555311   11011344555555544322211                                1234567


Q ss_pred             CccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562          300 EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM  339 (461)
Q Consensus       300 ~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  339 (461)
                      +|+.|++++|.+..+      ..+. .+++|+.|++..+.
T Consensus       151 ~L~~L~L~~N~i~~~------~~l~-~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          151 KLEVLDLHGNEITNT------GGLT-RLKKVNWIDLTGQK  183 (263)
T ss_dssp             TCCEEECTTSCCCBC------TTST-TCCCCCEEEEEEEE
T ss_pred             CCCEEECCCCcCcch------HHhc-cCCCCCEEeCCCCc
Confidence            777777777665432      2223 45577777776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.53  E-value=3.3e-09  Score=99.96  Aligned_cols=195  Identities=17%  Similarity=0.093  Sum_probs=130.0

Q ss_pred             HhcCCeEEEEEEcceeeeCCCCc--ccCCCccEEEeceeccccccccC-C-Ccccc-----CcccEEEeeeEEEcChhhH
Q 012562          119 ARRNVQVFDLTVYGEVTELPHCL--VTCESLEALKLACRQLRMCVLKL-P-FSVGF-----SRLKSLDLHNVEFLDHNLL  189 (461)
Q Consensus       119 ~~~~l~~L~l~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l-----~~L~~L~L~~~~~~~~~~l  189 (461)
                      ...++++|+++.......+|..+  ..+++|++|+|+++     .+.. | .+..+     ++|++|+|.++.+.+.  .
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~--~  165 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-----SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF--S  165 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-----BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC--C
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-----CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc--h
Confidence            35689999998876566778876  57999999999999     5544 2 23344     8999999999988653  2


Q ss_pred             HHHhhcCccccceEEeeeecCCce----EEE-EecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEecCCCCc---
Q 012562          190 HKFVSSRRLLEKLILKSCSFRDFK----ILD-ISSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLASWAPD---  259 (461)
Q Consensus       190 ~~l~~~cp~Le~L~L~~c~~~~~~----~~~-i~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~---  259 (461)
                      ...+.++++|++|++++|...+..    ... -..++|++|.+.+|.+.......  +.-..++|++|+++++....   
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence            245678999999999998643210    000 12378999999988852111111  11145899999999865544   


Q ss_pred             -eeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEe
Q 012562          260 -FAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVS  338 (461)
Q Consensus       260 -~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  338 (461)
                       ..+..+++|+.++++-+..  ...|.        .+  .++|+.|++++|.+..+.     . +. .+++|++|++..+
T Consensus       246 ~~~~~~l~~L~~L~Ls~N~l--~~ip~--------~~--~~~L~~L~Ls~N~l~~~p-----~-~~-~l~~L~~L~L~~N  306 (312)
T 1wwl_A          246 APSCDWPSQLNSLNLSFTGL--KQVPK--------GL--PAKLSVLDLSYNRLDRNP-----S-PD-ELPQVGNLSLKGN  306 (312)
T ss_dssp             CSCCCCCTTCCEEECTTSCC--SSCCS--------SC--CSEEEEEECCSSCCCSCC-----C-TT-TSCEEEEEECTTC
T ss_pred             hhhhhhcCCCCEEECCCCcc--Chhhh--------hc--cCCceEEECCCCCCCCCh-----h-Hh-hCCCCCEEeccCC
Confidence             2344568899999843322  11111        01  168999999999876431     1 33 5668999988665


Q ss_pred             C
Q 012562          339 M  339 (461)
Q Consensus       339 ~  339 (461)
                      .
T Consensus       307 ~  307 (312)
T 1wwl_A          307 P  307 (312)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.51  E-value=5.5e-09  Score=107.11  Aligned_cols=146  Identities=22%  Similarity=0.172  Sum_probs=94.8

Q ss_pred             hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562          120 RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       120 ~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      .++++.|+|+.+. ...+|. +..+++|+.|+|++|     .+.. +.+..+++|++|+|.++.+.+-   . -+..+|+
T Consensus        64 l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-----~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~-~l~~l~~  132 (605)
T 1m9s_A           64 LPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-----KIKDLSSLKDLKKLKSLSLEHNGISDI---N-GLVHLPQ  132 (605)
T ss_dssp             CTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-----CCCCCTTSTTCTTCCEEECTTSCCCCC---G-GGGGCTT
T ss_pred             CCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-----CCCCChhhccCCCCCEEEecCCCCCCC---c-cccCCCc
Confidence            3689999985543 223444 667999999999999     6666 5677899999999999988753   2 2678999


Q ss_pred             ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEee
Q 012562          199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDII  278 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~  278 (461)
                      |+.|+|++|.+.++..+ -..++|+.|.+..|.+.+..  . .-.+++|+.|.++++....                   
T Consensus       133 L~~L~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~i~~-------------------  189 (605)
T 1m9s_A          133 LESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISD-------------------  189 (605)
T ss_dssp             CSEEECCSSCCCCCGGG-GSCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCB-------------------
T ss_pred             cCEEECCCCccCCchhh-cccCCCCEEECcCCcCCCch--h-hccCCCCCEEECcCCCCCC-------------------
Confidence            99999999875543100 01256666666665531111  1 1134555555555432211                   


Q ss_pred             cCCCCchhhHHHHHHHHhcCCCccEEEEecchhh
Q 012562          279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLR  312 (461)
Q Consensus       279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~  312 (461)
                                  + ..+..+++|+.|+|++|.+.
T Consensus       190 ------------l-~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          190 ------------L-RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             ------------C-GGGTTCTTCSEEECCSEEEE
T ss_pred             ------------C-hHHccCCCCCEEEccCCcCc
Confidence                        1 12456889999999988754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.50  E-value=3.5e-09  Score=98.62  Aligned_cols=189  Identities=16%  Similarity=0.088  Sum_probs=99.0

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      +++++++... ....+|..+.  ++|+.|+|+++     .+..   ..+..+++|++|+|.++.++.-..    ...++.
T Consensus        11 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~   78 (290)
T 1p9a_G           11 SHLEVNCDKR-NLTALPPDLP--KDTTILHLSEN-----LLYTFSLATLMPYTRLTQLNLDRAELTKLQV----DGTLPV   78 (290)
T ss_dssp             TCCEEECTTS-CCSSCCSCCC--TTCCEEECTTS-----CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----CSCCTT
T ss_pred             CccEEECCCC-CCCcCCCCCC--CCCCEEEcCCC-----cCCccCHHHhhcCCCCCEEECCCCccCcccC----CCCCCc
Confidence            3455555322 2334555443  57888888888     4433   245667888888888776654311    156788


Q ss_pred             ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEEEEE
Q 012562          199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIFF  275 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~  275 (461)
                      |+.|++++|.+..+.......++|+.|.+..+.+..... ...-.+++|++|.++++......   +..+++|+.+++..
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            888888887654332211123678888888776421110 01124678888888885443322   23445555555522


Q ss_pred             EeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEe
Q 012562          276 DIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVS  338 (461)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  338 (461)
                      +..  ...+       ...+..+++|+.|.+++|.+..+..     .+. ...+|++|.+..+
T Consensus       158 N~l--~~l~-------~~~~~~l~~L~~L~L~~N~l~~ip~-----~~~-~~~~L~~l~L~~N  205 (290)
T 1p9a_G          158 NNL--TELP-------AGLLNGLENLDTLLLQENSLYTIPK-----GFF-GSHLLPFAFLHGN  205 (290)
T ss_dssp             SCC--SCCC-------TTTTTTCTTCCEEECCSSCCCCCCT-----TTT-TTCCCSEEECCSC
T ss_pred             CcC--CccC-------HHHhcCcCCCCEEECCCCcCCccCh-----hhc-ccccCCeEEeCCC
Confidence            111  0000       1122345666666666665442221     111 3335666666444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.43  E-value=2.6e-08  Score=91.27  Aligned_cols=164  Identities=12%  Similarity=0.023  Sum_probs=114.4

Q ss_pred             CCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCC
Q 012562          144 CESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STS  221 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~  221 (461)
                      +.+++.++++.+     .+.. +....+++|++|++.++.+++-   . -+..+++|+.|++++|.+.+...  +. .++
T Consensus        18 l~~l~~l~l~~~-----~i~~~~~~~~l~~L~~L~l~~n~i~~l---~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~   86 (263)
T 1xeu_A           18 LANAVKQNLGKQ-----SVTDLVSQKELSGVQNFNGDNSNIQSL---A-GMQFFTNLKELHLSHNQISDLSP--LKDLTK   86 (263)
T ss_dssp             HHHHHHHHHTCS-----CTTSEECHHHHTTCSEEECTTSCCCCC---T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSS
T ss_pred             HHHHHHHHhcCC-----CcccccchhhcCcCcEEECcCCCcccc---h-HHhhCCCCCEEECCCCccCCChh--hccCCC
Confidence            445667777777     5555 4567899999999999988754   2 36789999999999987665543  22 377


Q ss_pred             cCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCc
Q 012562          222 LKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEV  301 (461)
Q Consensus       222 L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l  301 (461)
                      |+.|.+.+|.+.+.....   . ++|++|.++++.....                                ..+..+++|
T Consensus        87 L~~L~L~~N~l~~l~~~~---~-~~L~~L~L~~N~l~~~--------------------------------~~l~~l~~L  130 (263)
T 1xeu_A           87 LEELSVNRNRLKNLNGIP---S-ACLSRLFLDNNELRDT--------------------------------DSLIHLKNL  130 (263)
T ss_dssp             CCEEECCSSCCSCCTTCC---C-SSCCEEECCSSCCSBS--------------------------------GGGTTCTTC
T ss_pred             CCEEECCCCccCCcCccc---c-CcccEEEccCCccCCC--------------------------------hhhcCcccc
Confidence            888888887753222211   1 7777777777533221                                114568899


Q ss_pred             cEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          302 KALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       302 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      +.|++++|.+..+.      .+. .+++|++|+++.+.....  .   .+..+++|+.|++..+.
T Consensus       131 ~~L~Ls~N~i~~~~------~l~-~l~~L~~L~L~~N~i~~~--~---~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          131 EILSIRNNKLKSIV------MLG-FLSKLEVLDLHGNEITNT--G---GLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CEEECTTSCCCBCG------GGG-GCTTCCEEECTTSCCCBC--T---TSTTCCCCCEEEEEEEE
T ss_pred             cEEECCCCcCCCCh------HHc-cCCCCCEEECCCCcCcch--H---HhccCCCCCEEeCCCCc
Confidence            99999998866432      233 567999999977755322  2   56889999999999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.43  E-value=5.5e-08  Score=96.49  Aligned_cols=133  Identities=14%  Similarity=0.068  Sum_probs=77.8

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .++++|+++.+.. ..+| .+..+++|++|++++|     .+.. |.  ..++|++|+|.++.+.+-   . -+.+++.|
T Consensus       131 ~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N-----~l~~lp~--~~~~L~~L~L~~n~l~~l---~-~~~~l~~L  197 (454)
T 1jl5_A          131 PLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNN-----SLKKLPD--LPPSLEFIAAGNNQLEEL---P-ELQNLPFL  197 (454)
T ss_dssp             TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS-----CCSCCCC--CCTTCCEEECCSSCCSSC---C-CCTTCTTC
T ss_pred             CCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCC-----cCcccCC--CcccccEEECcCCcCCcC---c-cccCCCCC
Confidence            4677777754432 2366 4666788888888887     4443 21  235788888887766542   2 25677888


Q ss_pred             cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEE
Q 012562          200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFI  273 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l  273 (461)
                      +.|++++|.+.++..   ..++|+.|.+.+|.+.   .+.....+++|++|.++++....+. ...++|+.+++
T Consensus       198 ~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~l~---~lp~~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l  264 (454)
T 1jl5_A          198 TAIYADNNSLKKLPD---LPLSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTLP-DLPPSLEALNV  264 (454)
T ss_dssp             CEEECCSSCCSSCCC---CCTTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCSSCC-SCCTTCCEEEC
T ss_pred             CEEECCCCcCCcCCC---CcCcccEEECcCCcCC---cccccCCCCCCCEEECCCCcCCccc-ccccccCEEEC
Confidence            888888876544221   1257777777777642   2221115667777777764433221 12355666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.43  E-value=9.3e-08  Score=98.89  Aligned_cols=127  Identities=16%  Similarity=0.106  Sum_probs=69.4

Q ss_pred             CCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          122 NVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .+++|+|+.+. ...+|+ .+..+++|++|+|++|     .+..   ..+..+++|++|+|.+|.++.-  -...+.+++
T Consensus        53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-----~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l--~~~~f~~L~  124 (635)
T 4g8a_A           53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLS  124 (635)
T ss_dssp             TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-----CCCEECTTTTTTCTTCCEEECTTCCCCEE--CGGGGTTCT
T ss_pred             CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-----cCCCcChhHhcCCCCCCEEEccCCcCCCC--CHHHhcCCC
Confidence            56777775544 234443 3445777777777777     4433   2456677777777777765431  123456777


Q ss_pred             cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCC
Q 012562          198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASW  256 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  256 (461)
                      +|++|+|++|.+.++....+. .++|++|.+..+.+.........-.+++|++|.++++.
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            777777777654443322222 25666666666553111100111134566666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.42  E-value=1.6e-08  Score=85.78  Aligned_cols=128  Identities=21%  Similarity=0.161  Sum_probs=80.2

Q ss_pred             cCCeEEEEEEccee-eeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562          121 RNVQVFDLTVYGEV-TELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       121 ~~l~~L~l~~~~~~-~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      +++++|++...... ..+|..+..+++|++|+|++|     .+.. +.+..+++|++|+|.++.+.+  .+..++.++|.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~   96 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-----GLISVSNLPKLPKLKKLELSENRIFG--GLDMLAEKLPN   96 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-----CCCCCSSCCCCSSCCEEEEESCCCCS--CCCHHHHHCTT
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-----CCCChhhhccCCCCCEEECcCCcCch--HHHHHHhhCCC
Confidence            46888888655422 367777777888999999888     5444 456678889999998888876  24566677889


Q ss_pred             ccceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCe--EEEEecCCeeeEEEecC
Q 012562          199 LEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNY--KVKIACPNLVSFNFLAS  255 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~--~~~~~~p~L~~L~l~~~  255 (461)
                      |+.|++++|.+.++..+ .+ ..++|+.|.+..|.+......  ...-.+|+|++|++.++
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            99999988875543210 11 125666666666553211110  01113556666655553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.41  E-value=7e-08  Score=90.68  Aligned_cols=154  Identities=18%  Similarity=0.052  Sum_probs=73.3

Q ss_pred             cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHH--HhhcCccccceEEeeeecCCceEEE-
Q 012562          143 TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHK--FVSSRRLLEKLILKSCSFRDFKILD-  216 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~--l~~~cp~Le~L~L~~c~~~~~~~~~-  216 (461)
                      .+++|++|+|++|     .+..   ..+..+++|++|+|++|.+.+...+..  .+..+|+|++|+|++|.+..+.... 
T Consensus       143 ~~~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  217 (310)
T 4glp_A          143 LKPGLKVLSIAQA-----HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA  217 (310)
T ss_dssp             BCSCCCEEEEECC-----SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred             hccCCCEEEeeCC-----CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence            3556666666666     3332   133456666666666655433211211  1234566666666665443221110 


Q ss_pred             ---EecCCcCeEEEeccCCCCCCCeEE--EEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHH
Q 012562          217 ---ISSTSLKSLTLDNFGGDESGNYKV--KIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHIL  291 (461)
Q Consensus       217 ---i~~~~L~~L~l~~~~~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  291 (461)
                         -..++|++|++++|.+.+.....+  ....++|++|.++++....+.-.-.++|+.++++.+...  .        +
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~--~--------~  287 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLN--R--------A  287 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCC--S--------C
T ss_pred             HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCC--C--------C
Confidence               012556666666555421111000  001256666666664443322112356666666433221  0        0


Q ss_pred             HHHHhcCCCccEEEEecchhh
Q 012562          292 SKLLNELCEVKALKLSTAFLR  312 (461)
Q Consensus       292 ~~~l~~l~~l~~L~l~~~~~~  312 (461)
                       ..+..+++++.|++++|.+.
T Consensus       288 -~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          288 -PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             -CCTTSCCCCSCEECSSTTTS
T ss_pred             -chhhhCCCccEEECcCCCCC
Confidence             11346788999999888654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.41  E-value=2e-07  Score=81.32  Aligned_cols=142  Identities=15%  Similarity=0.145  Sum_probs=92.6

Q ss_pred             cccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCcccc
Q 012562           94 SIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGF  170 (461)
Q Consensus        94 ~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l  170 (461)
                      .++.+.+.......-..      ....+++++|+++..  ....+..+..+++|++|++++|     .+..   ..+..+
T Consensus        45 ~L~~L~l~~n~i~~l~~------l~~l~~L~~L~l~~n--~~~~~~~l~~l~~L~~L~l~~n-----~l~~~~~~~l~~l  111 (197)
T 4ezg_A           45 SLTYITLANINVTDLTG------IEYAHNIKDLTINNI--HATNYNPISGLSNLERLRIMGK-----DVTSDKIPNLSGL  111 (197)
T ss_dssp             TCCEEEEESSCCSCCTT------GGGCTTCSEEEEESC--CCSCCGGGTTCTTCCEEEEECT-----TCBGGGSCCCTTC
T ss_pred             CccEEeccCCCccChHH------HhcCCCCCEEEccCC--CCCcchhhhcCCCCCEEEeECC-----ccCcccChhhcCC
Confidence            46667666543221111      112257999999765  2333446677999999999999     5543   456789


Q ss_pred             CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee-cCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCee
Q 012562          171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS-FRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLV  248 (461)
Q Consensus       171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~-~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~  248 (461)
                      ++|++|+|.++.+++.  ....+..++.|+.|++++|. ...+.  .+. .++|+.|.+..|.+.+...   .-.+|+|+
T Consensus       112 ~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~~---l~~l~~L~  184 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDS--ILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRG---IEDFPKLN  184 (197)
T ss_dssp             TTCCEEECCSSBCBGG--GHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCTT---GGGCSSCC
T ss_pred             CCCCEEEecCCccCcH--hHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChHH---hccCCCCC
Confidence            9999999999998874  34457889999999999986 44432  111 3667777777766422111   11456677


Q ss_pred             eEEEecC
Q 012562          249 SFNFLAS  255 (461)
Q Consensus       249 ~L~l~~~  255 (461)
                      +|.+.++
T Consensus       185 ~L~l~~N  191 (197)
T 4ezg_A          185 QLYAFSQ  191 (197)
T ss_dssp             EEEECBC
T ss_pred             EEEeeCc
Confidence            7766664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.41  E-value=6.3e-09  Score=94.67  Aligned_cols=160  Identities=17%  Similarity=0.119  Sum_probs=84.9

Q ss_pred             eeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCC
Q 012562          135 TELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRD  211 (461)
Q Consensus       135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~  211 (461)
                      ..+|..+.  ++|+.|+|+++     .+..   ..+..+++|++|+|.++.+.+.  ....+.+++.|+.|+|++|.+.+
T Consensus        27 ~~~p~~~~--~~l~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~   97 (251)
T 3m19_A           27 DSVPSGIP--ADTEKLDLQST-----GLATLSDATFRGLTKLTWLNLDYNQLQTL--SAGVFDDLTELGTLGLANNQLAS   97 (251)
T ss_dssp             SSCCSCCC--TTCCEEECTTS-----CCCCCCTTTTTTCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECTTSCCCC
T ss_pred             cccCCCCC--CCCCEEEccCC-----CcCccCHhHhcCcccCCEEECCCCcCCcc--CHhHhccCCcCCEEECCCCcccc
Confidence            34555443  47888888887     5444   2456678888888887776652  23345677788888887765432


Q ss_pred             ceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHH
Q 012562          212 FKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHI  290 (461)
Q Consensus       212 ~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  290 (461)
                      ...-.+ ..++|++|.+.++.+..... ...-..++|++|.++++.....                       +      
T Consensus        98 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-----------------------~------  147 (251)
T 3m19_A           98 LPLGVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSI-----------------------P------  147 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-----------------------C------
T ss_pred             cChhHhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCcc-----------------------C------
Confidence            211000 11445555555444210000 0001234455555544322211                       0      


Q ss_pred             HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562          291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM  339 (461)
Q Consensus       291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  339 (461)
                       ...+..+++|+.|++++|.+..+..    ..+. .+++|++|++..+.
T Consensus       148 -~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~l~~N~  190 (251)
T 3m19_A          148 -AGAFDKLTNLQTLSLSTNQLQSVPH----GAFD-RLGKLQTITLFGNQ  190 (251)
T ss_dssp             -TTTTTTCTTCCEEECCSSCCSCCCT----TTTT-TCTTCCEEECCSCC
T ss_pred             -HHHcCcCcCCCEEECCCCcCCccCH----HHHh-CCCCCCEEEeeCCc
Confidence             0123456788888888887653322    2233 55688888887664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.38  E-value=1e-08  Score=85.12  Aligned_cols=104  Identities=22%  Similarity=0.140  Sum_probs=73.3

Q ss_pred             cCCeEEEEEEccee-eeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562          121 RNVQVFDLTVYGEV-TELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       121 ~~l~~L~l~~~~~~-~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      +++++|+++..... ..+|..+..+++|++|++++|     .+.. +.+..+++|++|+|+++.+++  .+...+.+++.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-----GLTSIANLPKLNKLKKLELSDNRVSG--GLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-----CCCCCTTCCCCTTCCEEECCSSCCCS--CTHHHHHHCTT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-----CCCCchhhhcCCCCCEEECCCCcccc--hHHHHhhhCCC
Confidence            46888888555433 467877778999999999999     5544 566778999999999998876  36677778999


Q ss_pred             ccceEEeeeecCCceE-EEE-ecCCcCeEEEeccC
Q 012562          199 LEKLILKSCSFRDFKI-LDI-SSTSLKSLTLDNFG  231 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~-~~i-~~~~L~~L~l~~~~  231 (461)
                      |+.|++++|.+.+... ..+ ..++|++|.+.+|.
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            9999999987554321 011 12455555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.37  E-value=3.5e-08  Score=89.74  Aligned_cols=130  Identities=18%  Similarity=0.099  Sum_probs=84.9

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .+++.|++.........|..+..+++|++|+|+++     .+..  + .+..+++|++|+|.++.++.-  ....+.+++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~  107 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-----QLQTLSAGVFDDLTELGTLGLANNQLASL--PLGVFDHLT  107 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-----CCCCCCTTTTTTCTTCCEEECTTSCCCCC--CTTTTTTCT
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-----cCCccCHhHhccCCcCCEEECCCCccccc--ChhHhcccC
Confidence            36777887554433333445666889999999998     5554  2 356788999999998887652  334567889


Q ss_pred             cccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCC
Q 012562          198 LLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAP  258 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~  258 (461)
                      +|+.|+|++|.+.++..-.+ ..++|+.|.+.+|.+...... ..-.+++|++|+++++...
T Consensus       108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG-AFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCS
T ss_pred             CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH-HcCcCcCCCEEECCCCcCC
Confidence            99999999886554322111 137889999988875211110 0114678888888875443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.36  E-value=1.2e-07  Score=96.25  Aligned_cols=191  Identities=11%  Similarity=0.011  Sum_probs=110.9

Q ss_pred             hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562          120 RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       120 ~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      ..+++.|++.... ...+|..++  ++|++|+|++|     .+.. |  ..+++|++|+|.+|.+++-   .. +.+  +
T Consensus        58 ~~~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N-----~l~~ip--~~l~~L~~L~Ls~N~l~~i---p~-l~~--~  121 (571)
T 3cvr_A           58 INQFSELQLNRLN-LSSLPDNLP--PQITVLEITQN-----ALISLP--ELPASLEYLDACDNRLSTL---PE-LPA--S  121 (571)
T ss_dssp             HTTCSEEECCSSC-CSCCCSCCC--TTCSEEECCSS-----CCSCCC--CCCTTCCEEECCSSCCSCC---CC-CCT--T
T ss_pred             cCCccEEEeCCCC-CCccCHhHc--CCCCEEECcCC-----CCcccc--cccCCCCEEEccCCCCCCc---ch-hhc--C
Confidence            3478888885543 233776654  67888888888     5554 4  4578888888888877642   22 222  7


Q ss_pred             ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEee
Q 012562          199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDII  278 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~  278 (461)
                      |+.|+|++|.+.++..   ..++|+.|.+.+|.+..   +..  ..++|++|.++++....+.. -.++|+.++++.+..
T Consensus       122 L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~---lp~--~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          122 LKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM---LPE--LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLL  192 (571)
T ss_dssp             CCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC---CCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCCCCC---cCccccEEeCCCCccCc---CCC--cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCC
Confidence            8888888877655433   45778888888777521   221  46788888888754433211 116677777743322


Q ss_pred             cCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhH
Q 012562          279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSI  347 (461)
Q Consensus       279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~  347 (461)
                      .  ..|.. ..   .+....+.++.|++++|.+..+..     .+. .+++|+.|+++.|.........
T Consensus       193 ~--~lp~~-~~---~L~~~~~~L~~L~Ls~N~l~~lp~-----~l~-~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          193 E--SLPAV-PV---RNHHSEETEIFFRCRENRITHIPE-----NIL-SLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             S--SCCCC-C-----------CCEEEECCSSCCCCCCG-----GGG-GSCTTEEEECCSSSCCHHHHHH
T ss_pred             C--chhhH-HH---hhhcccccceEEecCCCcceecCH-----HHh-cCCCCCEEEeeCCcCCCcCHHH
Confidence            1  11110 00   111222334888888887663322     223 4668888888777654444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.34  E-value=8.8e-08  Score=97.22  Aligned_cols=177  Identities=14%  Similarity=-0.020  Sum_probs=122.1

Q ss_pred             CCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCc
Q 012562          144 CESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSL  222 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L  222 (461)
                      +.+|+.|+|+++     .+.. |.. -+++|++|+|.+|.++.-   .   ..+++|+.|+|++|.+.++..  +. .+|
T Consensus        58 ~~~L~~L~Ls~n-----~L~~lp~~-l~~~L~~L~Ls~N~l~~i---p---~~l~~L~~L~Ls~N~l~~ip~--l~-~~L  122 (571)
T 3cvr_A           58 INQFSELQLNRL-----NLSSLPDN-LPPQITVLEITQNALISL---P---ELPASLEYLDACDNRLSTLPE--LP-ASL  122 (571)
T ss_dssp             HTTCSEEECCSS-----CCSCCCSC-CCTTCSEEECCSSCCSCC---C---CCCTTCCEEECCSSCCSCCCC--CC-TTC
T ss_pred             cCCccEEEeCCC-----CCCccCHh-HcCCCCEEECcCCCCccc---c---cccCCCCEEEccCCCCCCcch--hh-cCC
Confidence            358999999999     6555 321 258999999999988743   3   568999999999998766544  32 399


Q ss_pred             CeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCcc
Q 012562          223 KSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVK  302 (461)
Q Consensus       223 ~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~  302 (461)
                      +.|.+.+|.+..   +..  ..++|++|.++++....+.- .+++|+.++++.+..  ...        .. +.  ++|+
T Consensus       123 ~~L~Ls~N~l~~---lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L--~~l--------p~-l~--~~L~  183 (571)
T 3cvr_A          123 KHLDVDNNQLTM---LPE--LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQL--TFL--------PE-LP--ESLE  183 (571)
T ss_dssp             CEEECCSSCCSC---CCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC--SCC--------CC-CC--TTCC
T ss_pred             CEEECCCCcCCC---CCC--cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCC--CCc--------ch-hh--CCCC
Confidence            999999998522   322  68999999999976554332 567899998854422  111        11 11  7899


Q ss_pred             EEEEecchhhhhccccccccCCcccCcc-------cEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccC
Q 012562          303 ALKLSTAFLRFHFVLEERGFIPNSFNYL-------KSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGE  367 (461)
Q Consensus       303 ~L~l~~~~~~~~~~~~~~~~l~~~~~~L-------~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~  367 (461)
                      .|++++|.+..+..      ++ .  +|       +.|+++.|....  ++.  -+..+++|+.|++..+.-
T Consensus       184 ~L~Ls~N~L~~lp~------~~-~--~L~~~~~~L~~L~Ls~N~l~~--lp~--~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          184 ALDVSTNLLESLPA------VP-V--RNHHSEETEIFFRCRENRITH--IPE--NILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             EEECCSSCCSSCCC------CC-----------CCEEEECCSSCCCC--CCG--GGGGSCTTEEEECCSSSC
T ss_pred             EEECcCCCCCchhh------HH-H--hhhcccccceEEecCCCccee--cCH--HHhcCCCCCEEEeeCCcC
Confidence            99999997663322      32 2  55       889887775432  222  234589999999988764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.33  E-value=2.2e-08  Score=99.37  Aligned_cols=138  Identities=16%  Similarity=0.082  Sum_probs=66.4

Q ss_pred             ccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEE
Q 012562          197 RLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFD  276 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~  276 (461)
                      +.|+.|++++|.+.++...   .++|++|.+.+|.+.   .+...-.+++|++|+++++....+. ...++|+.+++..+
T Consensus       111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~---~lp~~~~l~~L~~L~l~~N~l~~lp-~~~~~L~~L~L~~n  183 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKKLP-DLPPSLEFIAAGNN  183 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSS
T ss_pred             CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC---CCcccCCCCCCCEEECCCCcCcccC-CCcccccEEECcCC
Confidence            4555555555543332110   145566666555531   1211114556666666554333211 12345555555322


Q ss_pred             eecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCC
Q 012562          277 IIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPN  356 (461)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~  356 (461)
                      ..  ..        +. -+..+++++.|++++|.+..         +|...++|++|+++.+...  .++   -+..+++
T Consensus       184 ~l--~~--------l~-~~~~l~~L~~L~l~~N~l~~---------l~~~~~~L~~L~l~~n~l~--~lp---~~~~l~~  238 (454)
T 1jl5_A          184 QL--EE--------LP-ELQNLPFLTAIYADNNSLKK---------LPDLPLSLESIVAGNNILE--ELP---ELQNLPF  238 (454)
T ss_dssp             CC--SS--------CC-CCTTCTTCCEEECCSSCCSS---------CCCCCTTCCEEECCSSCCS--SCC---CCTTCTT
T ss_pred             cC--Cc--------Cc-cccCCCCCCEEECCCCcCCc---------CCCCcCcccEEECcCCcCC--ccc---ccCCCCC
Confidence            11  00        11 13456667777776665432         2212247777777665432  122   1457888


Q ss_pred             cceEEEEecc
Q 012562          357 LEALTIYFEG  366 (461)
Q Consensus       357 L~~L~l~~~~  366 (461)
                      |+.|++..+.
T Consensus       239 L~~L~l~~N~  248 (454)
T 1jl5_A          239 LTTIYADNNL  248 (454)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            8888887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.25  E-value=9.8e-08  Score=80.89  Aligned_cols=58  Identities=21%  Similarity=0.163  Sum_probs=39.7

Q ss_pred             CCCccEEEeceecccccccc--C-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562          144 CESLEALKLACRQLRMCVLK--L-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR  210 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~--~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~  210 (461)
                      .++|++|+|++|     .+.  . | .+..+++|++|+|.++.+++.    ..+..++.|+.|++++|.+.
T Consensus        23 ~~~L~~L~l~~n-----~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~   84 (168)
T 2ell_A           23 PAAVRELVLDNC-----KSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIF   84 (168)
T ss_dssp             TTSCSEEECCSC-----BCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCC
T ss_pred             cccCCEEECCCC-----CCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCc
Confidence            357888888888     554  2 3 346778888888888776542    34566777888888777543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.20  E-value=3.1e-07  Score=87.78  Aligned_cols=83  Identities=20%  Similarity=0.257  Sum_probs=50.2

Q ss_pred             cccCcccEEEeeeEEEcC-------hhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeE-
Q 012562          168 VGFSRLKSLDLHNVEFLD-------HNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYK-  239 (461)
Q Consensus       168 ~~l~~L~~L~L~~~~~~~-------~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~-  239 (461)
                      ..+++|++|.+..+...+       ..++..++..+|.|+.|.|.+|.  +.....+..++|++|.+..+.+. ...+. 
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~--~l~l~~~~~~~L~~L~L~~~~l~-~~~l~~  212 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN--NLSIGKKPRPNLKSLEIISGGLP-DSVVED  212 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB--TCBCCSCBCTTCSEEEEECSBCC-HHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC--CceeccccCCCCcEEEEecCCCC-hHHHHH
Confidence            356777777775543211       11577888999999999999873  22211234678888888866531 11111 


Q ss_pred             EE-EecCCeeeEEEe
Q 012562          240 VK-IACPNLVSFNFL  253 (461)
Q Consensus       240 ~~-~~~p~L~~L~l~  253 (461)
                      +. ..+|+|++|.++
T Consensus       213 l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHSBCTTCCEEEEE
T ss_pred             HHHccCCCCcEEEEe
Confidence            11 156888888775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.20  E-value=1.4e-07  Score=97.46  Aligned_cols=103  Identities=16%  Similarity=0.120  Sum_probs=63.0

Q ss_pred             HhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccc
Q 012562          295 LNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKI  374 (461)
Q Consensus       295 l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~  374 (461)
                      +..+++|+.|+|++|.+..+.    +..+. .+++|++|+++.+....-. +.  .+..+++|+.|+++.+.-.      
T Consensus       490 ~~~l~~L~~L~Ls~N~L~~l~----~~~f~-~l~~L~~L~Ls~N~l~~l~-~~--~~~~l~~L~~L~Ls~N~l~------  555 (635)
T 4g8a_A          490 FTELRNLTFLDLSQCQLEQLS----PTAFN-SLSSLQVLNMSHNNFFSLD-TF--PYKCLNSLQVLDYSLNHIM------  555 (635)
T ss_dssp             CTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECTTSCCCBCC-CG--GGTTCTTCCEEECTTSCCC------
T ss_pred             hhhccccCEEECCCCccCCcC----hHHHc-CCCCCCEEECCCCcCCCCC-hh--HHhCCCCCCEEECCCCcCC------
Confidence            456778888888888765332    23333 5668888888666432211 11  4567888888888776531      


Q ss_pred             cCcCcc---ccccceeEEEEE--eecCChhHHHHHHHHHhcCc
Q 012562          375 SNKSIF---CLTCHLKTVELI--HVAGDENELELVRFLLKNGH  412 (461)
Q Consensus       375 ~~~~~~---~~~~~Lk~v~i~--~~~g~~~e~~~~~~ll~~a~  412 (461)
                       ..++.   ...++|+.+.+.  .|.+.+.-..|..++-++..
T Consensus       556 -~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~  597 (635)
T 4g8a_A          556 -TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ  597 (635)
T ss_dssp             -BCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred             -CCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence             01121   123678888877  56666666778877655443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.11  E-value=2.9e-07  Score=82.30  Aligned_cols=119  Identities=16%  Similarity=0.050  Sum_probs=56.7

Q ss_pred             CCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecC
Q 012562          145 ESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SST  220 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~  220 (461)
                      ++|++|+|+++     .+..   ..+..+++|++|+|.++.+..-  -...+.+++.|+.|+|++|.+.++..-.+ ..+
T Consensus        40 ~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~L~~N~l~~i--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  112 (229)
T 3e6j_A           40 TNAQILYLHDN-----QITKLEPGVFDSLINLKELYLGSNQLGAL--PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV  112 (229)
T ss_dssp             TTCSEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCCEEEcCCC-----ccCccCHHHhhCccCCcEEECCCCCCCCc--ChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence            45555555555     3333   1234455555555555554321  11234455555555555554332211001 124


Q ss_pred             CcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCcee---eeCCCCceEEEE
Q 012562          221 SLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFI  273 (461)
Q Consensus       221 ~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l  273 (461)
                      +|+.|.+.++.+.   .+. .....++|++|.++++......   +..+++|+.+++
T Consensus       113 ~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A          113 HLKELFMCCNKLT---ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             TCCEEECCSSCCC---SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             hhCeEeccCCccc---ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            5555555555531   111 0124566777777665443322   445667776666

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.11  E-value=1.1e-06  Score=83.83  Aligned_cols=217  Identities=11%  Similarity=0.055  Sum_probs=119.0

Q ss_pred             cCCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccCCCccccCcccEEE-eeeEEEcChhhHHHHhhcCcc
Q 012562          121 RNVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLD-LHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~-L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      +++++|+|+.+. ...+|... ..+++|++|+|++|.+.. .++...+..+++|+++. +..+.+..  .....+.++++
T Consensus        30 ~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~--l~~~~f~~l~~  105 (350)
T 4ay9_X           30 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLY--INPEAFQNLPN  105 (350)
T ss_dssp             TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCE--ECTTSBCCCTT
T ss_pred             CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccc--cCchhhhhccc
Confidence            478888887654 44677654 458999999999982110 11112455677776644 44443332  11234678899


Q ss_pred             ccceEEeeeecCCceEE-EEecCCcCeEEEeccCCCCCCCeEE-E-E-ecCCeeeEEEecCCCCceeee--CCCCceEEE
Q 012562          199 LEKLILKSCSFRDFKIL-DISSTSLKSLTLDNFGGDESGNYKV-K-I-ACPNLVSFNFLASWAPDFAFE--DLDSLQNAF  272 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~~-~i~~~~L~~L~l~~~~~~~~~~~~~-~-~-~~p~L~~L~l~~~~~~~~~~~--~~~~L~~l~  272 (461)
                      |+.|++.+|.+...... .....++..|.+..+..  ...+.. . . ....++.|.++++....+...  ...+|.++.
T Consensus       106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~  183 (350)
T 4ay9_X          106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN  183 (350)
T ss_dssp             CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred             cccccccccccccCCchhhcccchhhhhhhccccc--cccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence            99999999875443221 12234566666654331  111110 0 1 124677888887655433211  223455555


Q ss_pred             EE-EEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhh
Q 012562          273 IF-FDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLL  351 (461)
Q Consensus       273 l~-~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL  351 (461)
                      +. .+.  ....+.       ..+.++++|+.|++++|.+..+...        .|.+|++|.+..+..- ..++   -+
T Consensus       184 l~~~n~--l~~i~~-------~~f~~l~~L~~LdLs~N~l~~lp~~--------~~~~L~~L~~l~~~~l-~~lP---~l  242 (350)
T 4ay9_X          184 LSDNNN--LEELPN-------DVFHGASGPVILDISRTRIHSLPSY--------GLENLKKLRARSTYNL-KKLP---TL  242 (350)
T ss_dssp             CTTCTT--CCCCCT-------TTTTTEECCSEEECTTSCCCCCCSS--------SCTTCCEEECTTCTTC-CCCC---CT
T ss_pred             hccCCc--ccCCCH-------HHhccCcccchhhcCCCCcCccChh--------hhccchHhhhccCCCc-CcCC---Cc
Confidence            41 110  111111       2345788999999999876643321        4668888876443221 1222   24


Q ss_pred             ccCCCcceEEEEe
Q 012562          352 NCSPNLEALTIYF  364 (461)
Q Consensus       352 ~~~p~L~~L~l~~  364 (461)
                      ..+++|+.+++..
T Consensus       243 ~~l~~L~~l~l~~  255 (350)
T 4ay9_X          243 EKLVALMEASLTY  255 (350)
T ss_dssp             TTCCSCCEEECSC
T ss_pred             hhCcChhhCcCCC
Confidence            6678888887754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.11  E-value=5.5e-08  Score=93.70  Aligned_cols=75  Identities=20%  Similarity=0.104  Sum_probs=36.7

Q ss_pred             HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchh-hHhhhhccCCCcceEEEEecc
Q 012562          291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVP-SIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l-~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      +...+...++|+.|+|++|.+...........+. ..++|++|+++.|....... .....++.+|+|+.|++..+.
T Consensus       175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            4444455666666666666544221111112222 33466666666654422221 111245566777777776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.11  E-value=1.9e-08  Score=87.90  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             CcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562          140 CLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS  218 (461)
Q Consensus       140 ~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~  218 (461)
                      .+..+++|++|+|++|     .+.. |.+..+++|++|+|.++.+++   +...+..+|.|+.|++++|.+.++.  .+.
T Consensus        43 ~~~~l~~L~~L~ls~n-----~l~~l~~~~~l~~L~~L~l~~n~l~~---l~~~~~~~~~L~~L~L~~N~l~~l~--~~~  112 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSLGRNLIKK---IENLDAVADTLEELWISYNQIASLS--GIE  112 (198)
T ss_dssp             HHHHTTTCSEEECSEE-----EESCCCCHHHHTTCCEEEEEEEEECS---CSSHHHHHHHCSEEEEEEEECCCHH--HHH
T ss_pred             HHhcCCCCCEEECCCC-----CCccccccccCCCCCEEECCCCCccc---ccchhhcCCcCCEEECcCCcCCcCC--ccc
Confidence            5556777777777777     4444 455667777777777777763   3344555677777777777655432  111


Q ss_pred             -cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEec
Q 012562          219 -STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLA  254 (461)
Q Consensus       219 -~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~  254 (461)
                       .++|+.|.+.+|.+.+.......-.+++|++|.+.+
T Consensus       113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence             245666666655531100000011345566666655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.08  E-value=4.8e-07  Score=80.93  Aligned_cols=127  Identities=17%  Similarity=0.083  Sum_probs=67.8

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .++++|+++.+......|..+..+++|++|+|+++     .+.. +  .+..+++|++|+|.++.++.-  ....+.+++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-----~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~~l~  112 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-----QLGALPVGVFDSLTQLTVLDLGTNQLTVL--PSAVFDRLV  112 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCT
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-----CCCCcChhhcccCCCcCEEECCCCcCCcc--ChhHhCcch
Confidence            45667776554433333444555677777777777     4433 2  245667777777777666532  223345667


Q ss_pred             cccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562          198 LLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS  255 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~  255 (461)
                      .|+.|+|++|.+..+.......++|+.|.+.+|.+..... ...-..++|++|.+.++
T Consensus       113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred             hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCC
Confidence            7777777776543221100112567777777665421110 00113566777776664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.07  E-value=3.6e-07  Score=81.17  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=46.6

Q ss_pred             ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecC
Q 012562          167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACP  245 (461)
Q Consensus       167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p  245 (461)
                      +..+++|++|+|.++.+..-  ....+.+++.|+.|+|++|.+..+..-.. ..++|+.|.+.+|.+..... ...-.++
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~  128 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLH  128 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEE--CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred             hhCCCCCCEEECCCCcCCCc--CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCC
Confidence            34455555555555544321  12224445555555555544322111000 12445555555554311100 0011356


Q ss_pred             CeeeEEEecCCCCce---eeeCCCCceEEEE
Q 012562          246 NLVSFNFLASWAPDF---AFEDLDSLQNAFI  273 (461)
Q Consensus       246 ~L~~L~l~~~~~~~~---~~~~~~~L~~l~l  273 (461)
                      +|++|+++++.....   .+..+++|+.+++
T Consensus       129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B          129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence            777777776544332   2445667777776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.07  E-value=1.7e-07  Score=80.05  Aligned_cols=58  Identities=12%  Similarity=0.076  Sum_probs=36.2

Q ss_pred             cCCCccEEEeceeccccccccC-CCccccC-cccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec
Q 012562          143 TCESLEALKLACRQLRMCVLKL-PFSVGFS-RLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF  209 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~-~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~  209 (461)
                      .+.+|+.|++++|     .+.. +....+. +|++|+|+++.+++-    ..+.+++.|+.|++++|.+
T Consensus        17 ~~~~L~~L~l~~n-----~l~~i~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l   76 (176)
T 1a9n_A           17 NAVRDRELDLRGY-----KIPVIENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRI   76 (176)
T ss_dssp             CTTSCEEEECTTS-----CCCSCCCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCC
T ss_pred             CcCCceEEEeeCC-----CCchhHHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcc
Confidence            4667777777777     4444 4444443 777777777766532    2355677777777777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.02  E-value=5.7e-07  Score=79.88  Aligned_cols=105  Identities=17%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecC
Q 012562          167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACP  245 (461)
Q Consensus       167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p  245 (461)
                      +..+++|++|+|.++.+++-  ....+.+++.|+.|+|++|.+.++..-.+. .++|++|.+.+|.+...... ....++
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~  129 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDI--EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLS  129 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCT
T ss_pred             hccCCCCCEEECCCCcCCEE--CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCc
Confidence            34455555555555544321  112244555555555555543322111111 24555555555543111000 011456


Q ss_pred             CeeeEEEecCCCCce---eeeCCCCceEEEEE
Q 012562          246 NLVSFNFLASWAPDF---AFEDLDSLQNAFIF  274 (461)
Q Consensus       246 ~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~  274 (461)
                      +|++|+++++.....   .+..+++|+.+++.
T Consensus       130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A          130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             TCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            777777776544333   34566777777773

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.00  E-value=6.8e-07  Score=78.54  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=17.6

Q ss_pred             ecCCeeeEEEecCCCCce---eeeCCCCceEEEEE
Q 012562          243 ACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIF  274 (461)
Q Consensus       243 ~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~  274 (461)
                      ..++|++|+++++.....   .+..+++|+.+++.
T Consensus       122 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A          122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence            346666666666433322   13456667776663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.97  E-value=1.5e-07  Score=77.91  Aligned_cols=79  Identities=19%  Similarity=0.139  Sum_probs=53.0

Q ss_pred             CCCccEEEeceecccccccc--C-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc-eEEEEe
Q 012562          144 CESLEALKLACRQLRMCVLK--L-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF-KILDIS  218 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~--~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~-~~~~i~  218 (461)
                      .++|+.|++++|     .+.  . | .+..+++|++|+|.++.+++.    ..+..++.|+.|++++|.+.+. ....-.
T Consensus        16 ~~~l~~L~l~~n-----~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           16 PSDVKELVLDNS-----RSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             GGGCSEEECTTC-----BCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             CccCeEEEccCC-----cCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence            468999999999     555  2 3 446789999999998877653    4467788999999988865442 110011


Q ss_pred             cCCcCeEEEeccC
Q 012562          219 STSLKSLTLDNFG  231 (461)
Q Consensus       219 ~~~L~~L~l~~~~  231 (461)
                      .++|+.|.+.+|.
T Consensus        87 l~~L~~L~ls~N~   99 (149)
T 2je0_A           87 CPNLTHLNLSGNK   99 (149)
T ss_dssp             CTTCCEEECTTSC
T ss_pred             CCCCCEEECCCCc
Confidence            3556666665555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.95  E-value=7.6e-07  Score=79.04  Aligned_cols=125  Identities=12%  Similarity=0.098  Sum_probs=59.5

Q ss_pred             CCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          122 NVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      ++++|++..+... .+|. .+..+++|++|+|+++     .+..   ..+..+++|++|+|+++.++.-  -..++.+++
T Consensus        33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~f~~l~  104 (220)
T 2v9t_B           33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN-----QISELAPDAFQGLRSLNSLVLYGNKITEL--PKSLFEGLF  104 (220)
T ss_dssp             TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSS-----CCCEECTTTTTTCSSCCEEECCSSCCCCC--CTTTTTTCT
T ss_pred             CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCC-----cCCCcCHHHhhCCcCCCEEECCCCcCCcc--CHhHccCCC
Confidence            4566666444322 2333 3334566666666666     3322   2345566666666666655431  222345566


Q ss_pred             cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562          198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS  255 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~  255 (461)
                      .|+.|+|++|.+.++..-.+. .++|+.|.+.+|.+...... ..-..++|++|.+.++
T Consensus       105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEeCCC
Confidence            666666666554332211111 25566666665553111100 0113456666666553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.92  E-value=2.2e-06  Score=81.88  Aligned_cols=112  Identities=18%  Similarity=0.223  Sum_probs=65.1

Q ss_pred             eeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee-ec
Q 012562          134 VTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC-SF  209 (461)
Q Consensus       134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c-~~  209 (461)
                      ...+|..+  .+++++|+|+++     .+..   ..+..+++|++|+|+++.+.+. --...+.+++.|+++.+..+ ..
T Consensus        21 Lt~iP~~l--~~~l~~L~Ls~N-----~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           21 VTEIPSDL--PRNAIELRFVLT-----KLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             CCSCCTTC--CTTCSEEEEESC-----CCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETTC
T ss_pred             CCccCcCc--CCCCCEEEccCC-----cCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCcc
Confidence            45677765  358999999999     5544   2467899999999998865432 11124567788776555443 22


Q ss_pred             CCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEec
Q 012562          210 RDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLA  254 (461)
Q Consensus       210 ~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~  254 (461)
                      ..+..-.. ..++|+.|.+.++.+...... ......++..|.+.+
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~  137 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQD  137 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEES
T ss_pred             cccCchhhhhccccccccccccccccCCch-hhcccchhhhhhhcc
Confidence            21111011 136788888887764211111 112445666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.92  E-value=1.6e-06  Score=73.13  Aligned_cols=68  Identities=13%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             eeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEE-EcChhhHHHHhhc---CccccceEEeee
Q 012562          135 TELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVE-FLDHNLLHKFVSS---RRLLEKLILKSC  207 (461)
Q Consensus       135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~-~~~~~~l~~l~~~---cp~Le~L~L~~c  207 (461)
                      ..+|..-...-.|++|+|++|     .+.+   .....+++|++|+|.+|. ++|. ++..+...   |+.|++|+|++|
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~-----~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDS-----CIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESC-----CCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESC
T ss_pred             ccCCcccCCCceEeEEeCcCC-----CccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCC
Confidence            355654434457999999999     4444   234678999999999985 6666 88887663   789999999998


Q ss_pred             e
Q 012562          208 S  208 (461)
Q Consensus       208 ~  208 (461)
                      .
T Consensus       125 ~  125 (176)
T 3e4g_A          125 G  125 (176)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.91  E-value=5.2e-06  Score=75.81  Aligned_cols=38  Identities=24%  Similarity=0.526  Sum_probs=34.9

Q ss_pred             CCCCCCCChHHHHHHhcCCChhHHH-HHHHHhHhHHHhh
Q 012562           15 GDRLCSLPEPVIHQIFSFMETIDVV-RASAVSRKWRYLW   52 (461)
Q Consensus        15 ~D~is~LPd~iL~~Ils~Lp~~d~~-~~s~vskrWr~lw   52 (461)
                      ...+..||+|||.+||++||.++.+ ++++|||+|+.+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            3578899999999999999999999 9999999999863

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.87  E-value=1.8e-06  Score=75.85  Aligned_cols=126  Identities=14%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             CCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCC
Q 012562          145 ESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTS  221 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~  221 (461)
                      ++|++|+|+++     .+.. +  .+..+++|++|+|.++.+.+-  ....+.+++.|++|+|++|.+.++..       
T Consensus        28 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~-------   93 (208)
T 2o6s_A           28 AQTTYLDLETN-----SLKSLPNGVFDELTSLTQLYLGGNKLQSL--PNGVFNKLTSLTYLNLSTNQLQSLPN-------   93 (208)
T ss_dssp             TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCT-------
T ss_pred             CCCcEEEcCCC-----ccCcCChhhhcccccCcEEECCCCccCcc--ChhhcCCCCCcCEEECCCCcCCccCH-------
Confidence            46777777777     4443 2  245677777777777665532  22334566777777777654322110       


Q ss_pred             cCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcC
Q 012562          222 LKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNEL  298 (461)
Q Consensus       222 L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l  298 (461)
                                    ..   .-.+++|++|.++++.....   .+..+++|+.+++..+..  ...+       ...+..+
T Consensus        94 --------------~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l--~~~~-------~~~~~~l  147 (208)
T 2o6s_A           94 --------------GV---FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL--KSVP-------DGVFDRL  147 (208)
T ss_dssp             --------------TT---TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--SCCC-------TTTTTTC
T ss_pred             --------------hH---hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc--ceeC-------HHHhccC
Confidence                          00   01345566666655433222   245567777777743221  0111       1224457


Q ss_pred             CCccEEEEecch
Q 012562          299 CEVKALKLSTAF  310 (461)
Q Consensus       299 ~~l~~L~l~~~~  310 (461)
                      ++++.|++.+|.
T Consensus       148 ~~L~~L~l~~N~  159 (208)
T 2o6s_A          148 TSLQYIWLHDNP  159 (208)
T ss_dssp             TTCCEEECCSCC
T ss_pred             CCccEEEecCCC
Confidence            778888888774

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.84  E-value=4.3e-06  Score=79.87  Aligned_cols=216  Identities=15%  Similarity=0.105  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHhcCCCCCcccEEEEEEeccC-Cc--hhHHHHHHHH-HhcCCeEEEEEEcc-e--------eeeCCCCcc
Q 012562           76 EKFKDFVNWVLLSQSGSVSIQRFRLYCLSYA-ND--YTVYRWVCAV-ARRNVQVFDLTVYG-E--------VTELPHCLV  142 (461)
Q Consensus        76 ~~~~~~v~~~l~~~~~~~~i~~l~l~~~~~~-~~--~~~~~wi~~~-~~~~l~~L~l~~~~-~--------~~~lp~~l~  142 (461)
                      ..+.+.+.++|..... ..++.+.+....+. ..  ..+..++..+ ..++++.|.+.... .        ...++..+.
T Consensus        91 ~~~~~~~~~fl~~~~~-~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~  169 (362)
T 2ra8_A           91 EEGVNLMDKILKDKKL-PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD  169 (362)
T ss_dssp             HTTCCHHHHHHHCTTG-GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred             ccHHHHHHHHhcCCCc-hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence            3445566677766665 45788877754432 11  2344444322 23589999883221 0        112333344


Q ss_pred             cCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhh-cCccccceEEeeee--cCCceEEEEec
Q 012562          143 TCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVS-SRRLLEKLILKSCS--FRDFKILDISS  219 (461)
Q Consensus       143 ~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~-~cp~Le~L~L~~c~--~~~~~~~~i~~  219 (461)
                      .+++|+.|.|+++.    .+..+. ..+++|++|.|..+.++++ .+..+.. .+|+|+.|+|..+.  ..+...  +  
T Consensus       170 ~~P~L~~L~L~g~~----~l~l~~-~~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--~--  239 (362)
T 2ra8_A          170 AMPLLNNLKIKGTN----NLSIGK-KPRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGD--M--  239 (362)
T ss_dssp             TCTTCCEEEEECCB----TCBCCS-CBCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSC--G--
T ss_pred             cCCCCcEEEEeCCC----Cceecc-ccCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchh--H--
Confidence            57899999998871    133333 3489999999998888776 6666653 69999999986431  111000  0  


Q ss_pred             CCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHH--h
Q 012562          220 TSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLL--N  296 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l--~  296 (461)
                      ..+..             . +. -.+|+|++|.+.++....                             .....+.  .
T Consensus       240 ~~l~~-------------~-l~~~~~p~Lr~L~L~~~~i~~-----------------------------~~~~~la~a~  276 (362)
T 2ra8_A          240 NVFRP-------------L-FSKDRFPNLKWLGIVDAEEQN-----------------------------VVVEMFLESD  276 (362)
T ss_dssp             GGTGG-------------G-SCTTTCTTCCEEEEESCTTHH-----------------------------HHHHHHHHCS
T ss_pred             HHHHH-------------H-HhcCCCCCcCEEeCCCCCCch-----------------------------HHHHHHHhCc
Confidence            00000             0 00 135788888887643211                             0111122  2


Q ss_pred             cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhh
Q 012562          297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPS  346 (461)
Q Consensus       297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~  346 (461)
                      .+++|+.|+|+.|.+...........++ .+++|++|++..|..+.+...
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~-~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVD-KIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHH-HHTTCSEEECCSBBCCHHHHH
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcc-cCCcceEEECCCCcCCHHHHH
Confidence            4667888888777766432212122333 566888888876655544444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.81  E-value=2.8e-06  Score=81.45  Aligned_cols=79  Identities=22%  Similarity=0.205  Sum_probs=38.6

Q ss_pred             CCeEEEEEEcceeeeCCCCcc--cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          122 NVQVFDLTVYGEVTELPHCLV--TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~--~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      .++.|+|+.+. ...++...+  .+++|++|+|++|     .+..   ..+..+++|++|+|.++.+..-  ....+.++
T Consensus        40 ~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-----~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l  111 (361)
T 2xot_A           40 YTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-----HLNFISSEAFVPVPNLRYLDLSSNHLHTL--DEFLFSDL  111 (361)
T ss_dssp             TCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTC
T ss_pred             CCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-----cCCccChhhccCCCCCCEEECCCCcCCcC--CHHHhCCC
Confidence            34555554433 222333322  4556666666666     3322   1344556666666666554431  12234555


Q ss_pred             ccccceEEeeee
Q 012562          197 RLLEKLILKSCS  208 (461)
Q Consensus       197 p~Le~L~L~~c~  208 (461)
                      +.|+.|+|++|.
T Consensus       112 ~~L~~L~L~~N~  123 (361)
T 2xot_A          112 QALEVLLLYNNH  123 (361)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEECCCCc
Confidence            666666666554

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.80  E-value=5.2e-06  Score=74.90  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=32.5

Q ss_pred             CCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562           17 RLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL   51 (461)
Q Consensus        17 ~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~l   51 (461)
                      -|++||+||+.+||+||+.+|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999963

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.75  E-value=3e-06  Score=72.24  Aligned_cols=139  Identities=12%  Similarity=-0.006  Sum_probs=76.1

Q ss_pred             CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEec
Q 012562          165 PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIAC  244 (461)
Q Consensus       165 ~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~  244 (461)
                      +.+..+++|++|+|.++.++.-   ..+...+|.|+.|++++|.+.++     .                     ..-.+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~l~~~-----~---------------------~l~~l   63 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIRKL-----D---------------------GFPLL   63 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCCCEE-----C---------------------CCCCC
T ss_pred             HhcCCcCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCCCCcc-----c---------------------ccccC
Confidence            4556778888888888877642   33344456888888888643321     0                     00135


Q ss_pred             CCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCC
Q 012562          245 PNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIP  324 (461)
Q Consensus       245 p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~  324 (461)
                      ++|++|.++++......                              ..++..+++|+.|++++|.+..+..   ...+.
T Consensus        64 ~~L~~L~Ls~N~l~~~~------------------------------~~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~  110 (176)
T 1a9n_A           64 RRLKTLLVNNNRICRIG------------------------------EGLDQALPDLTELILTNNSLVELGD---LDPLA  110 (176)
T ss_dssp             SSCCEEECCSSCCCEEC------------------------------SCHHHHCTTCCEEECCSCCCCCGGG---GGGGG
T ss_pred             CCCCEEECCCCcccccC------------------------------cchhhcCCCCCEEECCCCcCCcchh---hHhhh
Confidence            56666666664332210                              0122356677777777776543222   11223


Q ss_pred             cccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          325 NSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       325 ~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                       .+++|++|++..+............+..+|+|+.|++..+.
T Consensus       111 -~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          111 -SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             -GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             -cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence             45577777776554311110001145678888888777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.73  E-value=2e-07  Score=89.71  Aligned_cols=58  Identities=17%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             CCccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHH---h-hcCccccceEEeeee
Q 012562          145 ESLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKF---V-SSRRLLEKLILKSCS  208 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l---~-~~cp~Le~L~L~~c~  208 (461)
                      ++|++|+|++|     .+.+    .-...+++|++|+|.+|.+++. ....+   + ..++.|++|+|++|.
T Consensus       101 ~~L~~L~Ls~n-----~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          101 HALDEVNLASC-----QLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNP  166 (372)
T ss_dssp             SCEEEEECTTC-----CCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred             CCceEEEecCC-----CCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCC
Confidence            56777777777     4433    1122455677777777766554 33332   2 235666666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.67  E-value=3.9e-06  Score=72.68  Aligned_cols=88  Identities=16%  Similarity=0.124  Sum_probs=56.3

Q ss_pred             eeCCCCcccCCCccEEEeceeccccccccC--C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562          135 TELPHCLVTCESLEALKLACRQLRMCVLKL--P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR  210 (461)
Q Consensus       135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~  210 (461)
                      ..+|..+..  +|++|+|+++     .+..  +  .+..+++|++|+|.++.+++-  ....+.+++.|+.|+|++|.+.
T Consensus        21 ~~ip~~~~~--~l~~L~l~~n-----~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~   91 (192)
T 1w8a_A           21 KEIPRDIPL--HTTELLLNDN-----ELGRISSDGLFGRLPHLVKLELKRNQLTGI--EPNAFEGASHIQELQLGENKIK   91 (192)
T ss_dssp             SSCCSCCCT--TCSEEECCSC-----CCCSBCCSCSGGGCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSCCCC
T ss_pred             CcCccCCCC--CCCEEECCCC-----cCCccCCccccccCCCCCEEECCCCCCCCc--CHhHcCCcccCCEEECCCCcCC
Confidence            456665543  8899999998     5544  2  266889999999998887652  2345677889999999887643


Q ss_pred             CceEEEEe-cCCcCeEEEeccC
Q 012562          211 DFKILDIS-STSLKSLTLDNFG  231 (461)
Q Consensus       211 ~~~~~~i~-~~~L~~L~l~~~~  231 (461)
                      ++..-.+. .++|+.|.+.++.
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           92 EISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCSSC
T ss_pred             ccCHHHhcCCCCCCEEECCCCc
Confidence            32111111 1445555555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.64  E-value=6.8e-06  Score=71.21  Aligned_cols=102  Identities=20%  Similarity=0.125  Sum_probs=45.8

Q ss_pred             CccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCc
Q 012562          146 SLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSL  222 (461)
Q Consensus       146 ~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L  222 (461)
                      +|++|+|+++     .+.. | .+..+++|++|+|+++.++.-  ....+.+++.|+.|+|++|.+.++..-.+. .++|
T Consensus        32 ~l~~L~L~~n-----~i~~ip~~~~~l~~L~~L~Ls~N~i~~i--~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L  104 (193)
T 2wfh_A           32 DVTELYLDGN-----QFTLVPKELSNYKHLTLIDLSNNRISTL--SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL  104 (193)
T ss_dssp             TCCEEECCSS-----CCCSCCGGGGGCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             CCCEEECCCC-----cCchhHHHhhcccCCCEEECCCCcCCEe--CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence            5555555555     3322 1 334455555555555554431  112244455555555555543222110011 1455


Q ss_pred             CeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562          223 KSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS  255 (461)
Q Consensus       223 ~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~  255 (461)
                      +.|.+.+|.+..... ...-..++|++|.+.++
T Consensus       105 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          105 RLLSLHGNDISVVPE-GAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCSSCCCBCCT-TTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCeeCh-hhhhcCccccEEEeCCC
Confidence            555555554311000 00114678888888774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.60  E-value=8.1e-06  Score=72.33  Aligned_cols=127  Identities=14%  Similarity=0.041  Sum_probs=86.6

Q ss_pred             CCeEEEEEEcceeeeCCCC-cccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          122 NVQVFDLTVYGEVTELPHC-LVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .+++|+++.+......|.. +..+++|++|+|+++     .+..   ..+..+++|++|+|.++.++.-  ....+.+++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-----~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~  105 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-----KITDIEEGAFEGASGVNEILLTSNRLENV--QHKMFKGLE  105 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCCC--CGGGGTTCS
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-----cCCEECHHHhCCCCCCCEEECCCCccCcc--CHhHhcCCc
Confidence            4677877655433333433 456899999999999     5444   2567899999999999988653  344577899


Q ss_pred             cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCC
Q 012562          198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASW  256 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  256 (461)
                      .|++|+|++|.+.++....+. .++|+.|.+.+|.+..... ...-.+++|++|.++++.
T Consensus       106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred             CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcC
Confidence            999999999876554322222 3789999999887522111 011257899999998853

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.52  E-value=1.5e-05  Score=67.76  Aligned_cols=105  Identities=17%  Similarity=0.087  Sum_probs=54.6

Q ss_pred             CCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecC
Q 012562          145 ESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SST  220 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~  220 (461)
                      ++|++|+|+++     .+.. +  .+..+++|++|+|.++.++.-  ....+.+++.|+.|++++|.+.+...-.+ ..+
T Consensus        28 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  100 (177)
T 2o6r_A           28 SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSQNQIQSL--PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT  100 (177)
T ss_dssp             TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCcEEEeCCC-----cccEeCHHHhcCcccccEEECCCCcceEe--ChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence            46666666666     4333 1  234566666666666655432  22234556666666666665433221111 125


Q ss_pred             CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCC
Q 012562          221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWA  257 (461)
Q Consensus       221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  257 (461)
                      +|+.|.+..+.+..... ...-..++|++|.+.++..
T Consensus       101 ~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          101 QLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             TCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred             ccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCe
Confidence            66666666665311110 0111468899999988543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.50  E-value=9.6e-06  Score=70.15  Aligned_cols=81  Identities=16%  Similarity=0.078  Sum_probs=60.5

Q ss_pred             CCeEEEEEEcceeeeCCCC--cccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          122 NVQVFDLTVYGEVTELPHC--LVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~--l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      ++++|+++.+. ...++..  +..+++|++|+|+++     .+..   ..+..+++|++|+|.++.+++.  ....+.++
T Consensus        30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l  101 (192)
T 1w8a_A           30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN-----QLTGIEPNAFEGASHIQELQLGENKIKEI--SNKMFLGL  101 (192)
T ss_dssp             TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSCCCCEE--CSSSSTTC
T ss_pred             CCCEEECCCCc-CCccCCccccccCCCCCEEECCCC-----CCCCcCHhHcCCcccCCEEECCCCcCCcc--CHHHhcCC
Confidence            68888886554 2344442  567999999999999     5544   3567899999999999987653  23346778


Q ss_pred             ccccceEEeeeecC
Q 012562          197 RLLEKLILKSCSFR  210 (461)
Q Consensus       197 p~Le~L~L~~c~~~  210 (461)
                      +.|+.|+|++|.+.
T Consensus       102 ~~L~~L~L~~N~l~  115 (192)
T 1w8a_A          102 HQLKTLNLYDNQIS  115 (192)
T ss_dssp             TTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCC
Confidence            99999999998644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.49  E-value=8.8e-06  Score=82.76  Aligned_cols=79  Identities=22%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .++.|+++.+. ...+|. +..+++|+.|+|++|     .+.. | .+..+++|++|+|++|.+++   ++ -+.++++|
T Consensus       442 ~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N-----~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp-~l~~l~~L  510 (567)
T 1dce_A          442 DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN-----RLRALPPALAALRCLEVLQASDNALEN---VD-GVANLPRL  510 (567)
T ss_dssp             TCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS-----CCCCCCGGGGGCTTCCEEECCSSCCCC---CG-GGTTCSSC
T ss_pred             CceEEEecCCC-CCCCcC-ccccccCcEeecCcc-----cccccchhhhcCCCCCEEECCCCCCCC---Cc-ccCCCCCC
Confidence            46666664332 223554 556667777777766     4333 2 45566677777776666654   22 35566666


Q ss_pred             cceEEeeeecCC
Q 012562          200 EKLILKSCSFRD  211 (461)
Q Consensus       200 e~L~L~~c~~~~  211 (461)
                      +.|+|++|.+.+
T Consensus       511 ~~L~Ls~N~l~~  522 (567)
T 1dce_A          511 QELLLCNNRLQQ  522 (567)
T ss_dssp             CEEECCSSCCCS
T ss_pred             cEEECCCCCCCC
Confidence            666666665433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.47  E-value=8.1e-06  Score=70.71  Aligned_cols=100  Identities=19%  Similarity=0.078  Sum_probs=51.6

Q ss_pred             cCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCee
Q 012562          170 FSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLV  248 (461)
Q Consensus       170 l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~  248 (461)
                      .++|++|+|.++.++.   +...+.+++.|+.|+|++|.+.++..-.+. .++|++|.+.++.+...... ..-..++|+
T Consensus        30 ~~~l~~L~L~~n~i~~---ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~  105 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL---VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLR  105 (193)
T ss_dssp             CTTCCEEECCSSCCCS---CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCC
T ss_pred             CCCCCEEECCCCcCch---hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCC
Confidence            3567777777666653   223456667777777776654432211111 25666777766653111100 011356677


Q ss_pred             eEEEecCCCCce---eeeCCCCceEEEE
Q 012562          249 SFNFLASWAPDF---AFEDLDSLQNAFI  273 (461)
Q Consensus       249 ~L~l~~~~~~~~---~~~~~~~L~~l~l  273 (461)
                      +|.++++....+   .+..+++|+.+++
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A          106 LLSLHGNDISVVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             EEECCCCCCCeeChhhhhcCccccEEEe
Confidence            777766444332   2345566666666

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.45  E-value=3.2e-05  Score=76.33  Aligned_cols=41  Identities=24%  Similarity=0.498  Sum_probs=37.3

Q ss_pred             CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc
Q 012562           14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS   54 (461)
Q Consensus        14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~   54 (461)
                      ..|.|+.||+||+.+||+|||.++.++++.|||+|+++...
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999999999976443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.41  E-value=3.8e-05  Score=64.68  Aligned_cols=81  Identities=12%  Similarity=0.047  Sum_probs=58.1

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccCC---Cccc----cCcccEEEeeeEE-EcChhhHHHHh
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLP---FSVG----FSRLKSLDLHNVE-FLDHNLLHKFV  193 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~---~~~~----l~~L~~L~L~~~~-~~~~~~l~~l~  193 (461)
                      .+++|+++.......--..+..|++|++|+|++|.    .+.+.   ....    +++|++|+|++|. +++. ++..+ 
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~----~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L-  135 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH----YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIAL-  135 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT----TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHG-
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC----ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHH-
Confidence            68999997553221111234579999999999993    24441   1222    4589999999985 7777 88775 


Q ss_pred             hcCccccceEEeeee
Q 012562          194 SSRRLLEKLILKSCS  208 (461)
Q Consensus       194 ~~cp~Le~L~L~~c~  208 (461)
                      +.||+|+.|+|++|.
T Consensus       136 ~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGCTTCCEEEEESCT
T ss_pred             hcCCCCCEEECCCCC
Confidence            579999999999995

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.41  E-value=1.6e-05  Score=67.61  Aligned_cols=120  Identities=18%  Similarity=0.094  Sum_probs=60.5

Q ss_pred             ccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCCcCeE
Q 012562          147 LEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTSLKSL  225 (461)
Q Consensus       147 L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~L  225 (461)
                      .+.++++++     .+........++|++|+|.++.+.+  .....+.+++.|+.|++++|.+.++..-.+ ..++|+.|
T Consensus         9 ~~~l~~~~~-----~l~~~p~~~~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            9 GTEIRCNSK-----GLTSVPTGIPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             TTEEECCSS-----CCSSCCTTCCTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEecCC-----CCccCCCCCCCCCcEEEeCCCcccE--eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence            455565555     4433112234567777777666553  222334566777777777665433221111 12567777


Q ss_pred             EEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEEEE
Q 012562          226 TLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIF  274 (461)
Q Consensus       226 ~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~  274 (461)
                      .+.++.+..... ...-..++|++|+++++....+.   +..+++|+.+++.
T Consensus        82 ~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           82 YLHENKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             ECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ECCCCCccccCH-HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            777665411100 00113566777777664433222   3445666666663

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.31  E-value=5.4e-05  Score=72.44  Aligned_cols=84  Identities=18%  Similarity=0.091  Sum_probs=62.3

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .++++|+|+.+....-.|..+..+++|++|+|++|     .+..   ..+..+++|++|+|.++.+..-  ....+.+++
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~  136 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-----HLHTLDEFLFSDLQALEVLLLYNNHIVVV--DRNAFEDMA  136 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCT
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCC-----cCCcCCHHHhCCCcCCCEEECCCCcccEE--CHHHhCCcc
Confidence            47899998665433333345667999999999999     5544   2467899999999999987642  234467889


Q ss_pred             cccceEEeeeecCC
Q 012562          198 LLEKLILKSCSFRD  211 (461)
Q Consensus       198 ~Le~L~L~~c~~~~  211 (461)
                      .|+.|+|++|.+..
T Consensus       137 ~L~~L~L~~N~l~~  150 (361)
T 2xot_A          137 QLQKLYLSQNQISR  150 (361)
T ss_dssp             TCCEEECCSSCCCS
T ss_pred             cCCEEECCCCcCCe
Confidence            99999999986543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.30  E-value=9.4e-05  Score=62.45  Aligned_cols=87  Identities=18%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             eCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc
Q 012562          136 ELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF  212 (461)
Q Consensus       136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~  212 (461)
                      .+|..+.  ++|++|+|+++     .+..  + .+..+++|++|+|.++.++.-  ....+.+++.|+.|+|++|.+.++
T Consensus        23 ~ip~~~~--~~l~~L~L~~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~f~~l~~L~~L~L~~N~l~~~   93 (170)
T 3g39_A           23 SVPTGIP--TTTQVLYLYDN-----QITKLEPGVFDRLTQLTRLDLDNNQLTVL--PAGVFDKLTQLTQLSLNDNQLKSI   93 (170)
T ss_dssp             SCCSCCC--TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccCccCC--CCCcEEEcCCC-----cCCccChhhhcCcccCCEEECCCCCcCcc--ChhhccCCCCCCEEECCCCccCEe
Confidence            3554442  56777777776     4433  2 345667777777776666542  223345667777777777654432


Q ss_pred             eEEEE-ecCCcCeEEEeccC
Q 012562          213 KILDI-SSTSLKSLTLDNFG  231 (461)
Q Consensus       213 ~~~~i-~~~~L~~L~l~~~~  231 (461)
                      ..-.+ ..++|+.|.+.+|.
T Consensus        94 ~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           94 PRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CTTTTTTCTTCCEEECCSSC
T ss_pred             CHHHhcCCCCCCEEEeCCCC
Confidence            21111 12566677766665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.27  E-value=3.8e-05  Score=78.04  Aligned_cols=84  Identities=24%  Similarity=0.151  Sum_probs=69.0

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .+++.|+|+.+... .+|..+..+++|+.|+|++|     .+.. |.+..+++|++|+|++|.+++. .....+.+++.|
T Consensus       463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-----~l~~lp~l~~l~~L~~L~Ls~N~l~~~-~~p~~l~~l~~L  535 (567)
T 1dce_A          463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-----ALENVDGVANLPRLQELLLCNNRLQQS-AAIQPLVSCPRL  535 (567)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-----CCCCCGGGTTCSSCCEEECCSSCCCSS-STTGGGGGCTTC
T ss_pred             ccCcEeecCccccc-ccchhhhcCCCCCEEECCCC-----CCCCCcccCCCCCCcEEECCCCCCCCC-CCcHHHhcCCCC
Confidence            58999999776534 88999999999999999999     5555 5677899999999999988753 214557889999


Q ss_pred             cceEEeeeecCC
Q 012562          200 EKLILKSCSFRD  211 (461)
Q Consensus       200 e~L~L~~c~~~~  211 (461)
                      +.|+|++|.+.+
T Consensus       536 ~~L~L~~N~l~~  547 (567)
T 1dce_A          536 VLLNLQGNSLCQ  547 (567)
T ss_dssp             CEEECTTSGGGG
T ss_pred             CEEEecCCcCCC
Confidence            999999987543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.26  E-value=0.00011  Score=62.32  Aligned_cols=88  Identities=15%  Similarity=0.105  Sum_probs=49.0

Q ss_pred             eeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCC
Q 012562          135 TELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRD  211 (461)
Q Consensus       135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~  211 (461)
                      ..+|..+.  ++|++|+|+++     .+..  | .+..+++|++|+|.++.++.-  ...++.++++|+.|+|++|.+.+
T Consensus        25 ~~iP~~~~--~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~~l~~L~~L~L~~N~l~~   95 (174)
T 2r9u_A           25 ASVPAGIP--TDKQRLWLNNN-----QITKLEPGVFDHLVNLQQLYFNSNKLTAI--PTGVFDKLTQLTQLDLNDNHLKS   95 (174)
T ss_dssp             SSCCSCCC--TTCSEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CccCCCcC--CCCcEEEeCCC-----CccccCHHHhcCCcCCCEEECCCCCCCcc--ChhHhCCcchhhEEECCCCccce
Confidence            34555443  56777777777     4433  2 345667777777777666542  12234566777777777765443


Q ss_pred             ceEEEEe-cCCcCeEEEeccC
Q 012562          212 FKILDIS-STSLKSLTLDNFG  231 (461)
Q Consensus       212 ~~~~~i~-~~~L~~L~l~~~~  231 (461)
                      +..-.+. .++|+.|.+.+|.
T Consensus        96 l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           96 IPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCTTTTTTCTTCSEEECCSSC
T ss_pred             eCHHHhccccCCCEEEeCCCC
Confidence            2211111 2567777776665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.21  E-value=0.00016  Score=70.90  Aligned_cols=38  Identities=32%  Similarity=0.602  Sum_probs=35.8

Q ss_pred             CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562           14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL   51 (461)
Q Consensus        14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~l   51 (461)
                      ..|.++.||+|++.+||+||+.+|.++++.|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            47999999999999999999999999999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.16  E-value=0.00011  Score=72.07  Aligned_cols=38  Identities=21%  Similarity=0.519  Sum_probs=35.4

Q ss_pred             CCCCCCCCChH----HHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562           14 DGDRLCSLPEP----VIHQIFSFMETIDVVRASAVSRKWRYL   51 (461)
Q Consensus        14 ~~D~is~LPd~----iL~~Ils~Lp~~d~~~~s~vskrWr~l   51 (461)
                      ..|.|+.||+|    |+.+||+||+.++.++++.|||+|+.+
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            36899999999    999999999999999999999999953

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.14  E-value=6.9e-05  Score=63.55  Aligned_cols=101  Identities=13%  Similarity=-0.038  Sum_probs=56.4

Q ss_pred             ccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCCcCe
Q 012562          147 LEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTSLKS  224 (461)
Q Consensus       147 L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~  224 (461)
                      -+.++++++     .+.. |. .-.++|++|+|.++.+.+-  ....+.+++.|+.|+|++|.+.++..-.. ..++|+.
T Consensus        14 ~~~l~~~~n-----~l~~iP~-~~~~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNI-----RLASVPA-GIPTDKQRLWLNNNQITKL--EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSS-----CCSSCCS-CCCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcEEEeCCC-----CCCccCC-CcCCCCcEEEeCCCCcccc--CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence            356677766     4444 32 1236777777777776542  23446677777777777776444321111 1267777


Q ss_pred             EEEeccCCCCCCCeEEEEecCCeeeEEEecCC
Q 012562          225 LTLDNFGGDESGNYKVKIACPNLVSFNFLASW  256 (461)
Q Consensus       225 L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  256 (461)
                      |.+.+|.+..... ...-.+++|++|.+.++.
T Consensus        86 L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           86 LDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             EECCSSCCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred             EECCCCccceeCH-HHhccccCCCEEEeCCCC
Confidence            7777776421110 001145677777777753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.12  E-value=7.4e-05  Score=63.09  Aligned_cols=102  Identities=14%  Similarity=-0.013  Sum_probs=56.1

Q ss_pred             CccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCCcC
Q 012562          146 SLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTSLK  223 (461)
Q Consensus       146 ~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~  223 (461)
                      +.+.++++++     .+.. |. .-.++|++|+|.++.++.-  ....+.+++.|+.|+|++|.+.++..-.. ..++|+
T Consensus        10 ~~~~l~~s~n-----~l~~ip~-~~~~~l~~L~L~~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGK-----SLASVPT-GIPTTTQVLYLYDNQITKL--EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             ETTEEECTTS-----CCSSCCS-CCCTTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEeCCC-----CcCccCc-cCCCCCcEEEcCCCcCCcc--ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence            3566777776     5444 32 1236777777777766542  23345667777777777766443322111 125677


Q ss_pred             eEEEeccCCCCCCCeEEEEecCCeeeEEEecCC
Q 012562          224 SLTLDNFGGDESGNYKVKIACPNLVSFNFLASW  256 (461)
Q Consensus       224 ~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  256 (461)
                      .|.+.+|.+..... ...-.+++|++|.++++.
T Consensus        82 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           82 QLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence            77777766421110 001145677777777643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.11  E-value=0.00017  Score=62.48  Aligned_cols=101  Identities=14%  Similarity=0.149  Sum_probs=74.3

Q ss_pred             hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CC-ccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562          120 RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PF-SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR  197 (461)
Q Consensus       120 ~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~-~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp  197 (461)
                      .+++++|+++.+. ...+| .+..+++|++|+|++|     .+.. |. ...+++|++|+|.++.+++-   . -+.+++
T Consensus        47 l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-----~l~~l~~~~~~~~~L~~L~L~~N~l~~l---~-~~~~l~  115 (198)
T 1ds9_A           47 LKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-----LIKKIENLDAVADTLEELWISYNQIASL---S-GIEKLV  115 (198)
T ss_dssp             TTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-----EECSCSSHHHHHHHCSEEEEEEEECCCH---H-HHHHHH
T ss_pred             CCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-----CcccccchhhcCCcCCEEECcCCcCCcC---C-ccccCC
Confidence            3589999995543 23366 6777999999999999     5555 43 34568999999999988753   3 367789


Q ss_pred             cccceEEeeeecCCceEE-EE-ecCCcCeEEEeccC
Q 012562          198 LLEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFG  231 (461)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~  231 (461)
                      .|+.|++++|.+.+...+ .+ ..++|++|.+.+|.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            999999999986654321 11 24789999998776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.0016  Score=61.09  Aligned_cols=61  Identities=15%  Similarity=0.020  Sum_probs=32.6

Q ss_pred             HhcCCCccEEEEecchhhhhccccccccCCcccCccc-EEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562          295 LNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLK-SLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       295 l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      +.++++|+.|++..+ +..+..+    .+. .+.+|+ .|.+...-  ...-..  .+..|++|+.|++...
T Consensus       246 F~~~~~L~~l~l~~n-i~~I~~~----aF~-~~~~L~~~l~l~~~l--~~I~~~--aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          246 FAQKKYLLKIKLPHN-LKTIGQR----VFS-NCGRLAGTLELPASV--TAIEFG--AFMGCDNLRYVLATGD  307 (329)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTT----TTT-TCTTCCEEEEECTTC--CEECTT--TTTTCTTEEEEEECSS
T ss_pred             hhCCCCCCEEECCcc-cceehHH----Hhh-CChhccEEEEEcccc--eEEchh--hhhCCccCCEEEeCCC
Confidence            346777888887765 3323221    122 344666 66663311  111111  4567888888887543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.08  E-value=3.4e-05  Score=80.97  Aligned_cols=104  Identities=13%  Similarity=0.008  Sum_probs=48.8

Q ss_pred             cccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562          141 LVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS  218 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~  218 (461)
                      +..+++|+.|+|++|     .+.. | ....+++|++|+|.+|.++.   +..-+.+++.|+.|+|++|.+..+. ..+.
T Consensus       220 ~~~l~~L~~L~Ls~n-----~l~~l~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~~lp-~~~~  290 (727)
T 4b8c_D          220 KYDDQLWHALDLSNL-----QIFNISANIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHNRLTSLP-AELG  290 (727)
T ss_dssp             --CCCCCCEEECTTS-----CCSCCCGGGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTSCCSSCC-SSGG
T ss_pred             hccCCCCcEEECCCC-----CCCCCChhhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCCcCCccC-hhhc
Confidence            334556666666666     3333 2 33355666666666655542   2223455566666666665433210 0111


Q ss_pred             -cCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCC
Q 012562          219 -STSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASW  256 (461)
Q Consensus       219 -~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~  256 (461)
                       .++|+.|.+.+|.+   ..+...+ .+++|++|+++++.
T Consensus       291 ~l~~L~~L~L~~N~l---~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMV---TTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             GGTTCSEEECCSSCC---CCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCCCCEEECCCCCC---CccChhhhcCCCccEEeCCCCc
Confidence             24555666555543   1111112 34566666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.04  E-value=3.6e-05  Score=80.73  Aligned_cols=102  Identities=17%  Similarity=0.140  Sum_probs=75.1

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~  198 (461)
                      ..++.|+|+.+. ...+|..++.+++|++|+|++|     .+.. | .+..+++|++|+|++|.++.   +..-+.+++.
T Consensus       224 ~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-----~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~  294 (727)
T 4b8c_D          224 QLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-----SLTELPAEIKNLSNLRVLDLSHNRLTS---LPAELGSCFQ  294 (727)
T ss_dssp             CCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-----CCSCCCGGGGGGTTCCEEECTTSCCSS---CCSSGGGGTT
T ss_pred             CCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-----cCcccChhhhCCCCCCEEeCcCCcCCc---cChhhcCCCC
Confidence            467888885544 3478888888999999999999     5544 3 46789999999999988763   3444678899


Q ss_pred             ccceEEeeeecCCceEEEEe-cCCcCeEEEeccCC
Q 012562          199 LEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGG  232 (461)
Q Consensus       199 Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~  232 (461)
                      |+.|+|++|.+..+.. .+. .++|+.|.+.+|.+
T Consensus       295 L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCC
T ss_pred             CCEEECCCCCCCccCh-hhhcCCCccEEeCCCCcc
Confidence            9999999986543321 122 37899999988875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.01  E-value=9.8e-05  Score=70.13  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=59.1

Q ss_pred             eeeCCCCcccCCCccEEEece-eccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec
Q 012562          134 VTELPHCLVTCESLEALKLAC-RQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF  209 (461)
Q Consensus       134 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~  209 (461)
                      ...+|. +..+++|+.|+|++ +     .+.. +  .+..+++|+.|+|++|.+..  .....+.+++.|+.|+|++|.+
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n-----~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQ-----HLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCS-----SCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCSSCC
T ss_pred             CCccCC-CCCCCCeeEEEccCCC-----CCCCcChhHhccccCCCEEECCCCccce--eCHHHhcCCcCCCEEeCCCCcc
Confidence            445777 77788888888885 7     4444 2  45678888888888887665  2334567788888888888765


Q ss_pred             CCceEEEEecCCcCeEEEeccCC
Q 012562          210 RDFKILDISSTSLKSLTLDNFGG  232 (461)
Q Consensus       210 ~~~~~~~i~~~~L~~L~l~~~~~  232 (461)
                      .++..-.....+|+.|.+.+|.+
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ceeCHHHcccCCceEEEeeCCCc
Confidence            44321111122377777776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.98  E-value=0.00021  Score=61.15  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEE--EEeCCCcch-hhHhhhhccCCCcceEEEEec
Q 012562          291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVL--SVSMADWVV-PSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l--~~~~~~~~~-l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      +...+...++|+.|+|++|.+...........+. ...+|++|++  ..+....+. ......++.++.|+.|++..+
T Consensus        85 l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           85 LAEMLKVNNTLKSLNVESNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            3444445555666666665543211111112222 3345666666  444332222 122225566667777766554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.0006  Score=64.14  Aligned_cols=66  Identities=11%  Similarity=0.073  Sum_probs=42.0

Q ss_pred             HHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcc-eEEEEe
Q 012562          290 ILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLE-ALTIYF  364 (461)
Q Consensus       290 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~-~L~l~~  364 (461)
                      .+..+...+++|+.|++..+.+..+..+.    +. .+.+|++|.+..+-  ...-..  .+..|++|+ .+.+..
T Consensus       217 ~~~~l~~~~~~L~~l~L~~n~i~~I~~~a----F~-~~~~L~~l~l~~ni--~~I~~~--aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          217 DFKLIRDYMPNLVSLDISKTNATTIPDFT----FA-QKKYLLKIKLPHNL--KTIGQR--VFSNCGRLAGTLELPA  283 (329)
T ss_dssp             HHHHHHHHCTTCCEEECTTBCCCEECTTT----TT-TCTTCCEEECCTTC--CEECTT--TTTTCTTCCEEEEECT
T ss_pred             HHHHHHHhcCCCeEEECCCCCcceecHhh----hh-CCCCCCEEECCccc--ceehHH--HhhCChhccEEEEEcc
Confidence            34555556899999999987665444322    22 45688888885431  111112  467899998 888865

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.10  E-value=0.00068  Score=65.64  Aligned_cols=14  Identities=7%  Similarity=0.095  Sum_probs=7.8

Q ss_pred             hhcCccccceEEee
Q 012562          193 VSSRRLLEKLILKS  206 (461)
Q Consensus       193 ~~~cp~Le~L~L~~  206 (461)
                      +.+|+.|+.+.+..
T Consensus       222 F~~~~~L~~l~l~~  235 (401)
T 4fdw_A          222 FLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTTCTTCCCEECCT
T ss_pred             hhCCCCCCEEecCC
Confidence            44566666665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.69  E-value=0.0028  Score=59.86  Aligned_cols=80  Identities=20%  Similarity=0.167  Sum_probs=53.5

Q ss_pred             CCeEEEEEE-cceeeeCC-CCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          122 NVQVFDLTV-YGEVTELP-HCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       122 ~l~~L~l~~-~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      ++++|+|+. +. ...+| ..+..+++|+.|+|++|     .+..  + .+..+++|++|+|++|.+..-  ...++...
T Consensus        32 ~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N-----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~~  103 (347)
T 2ifg_A           32 NLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKS-----GLRFVAPDAFHFTPRLSRLNLSFNALESL--SWKTVQGL  103 (347)
T ss_dssp             CCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSS-----CCCEECTTGGGSCSCCCEEECCSSCCSCC--CSTTTCSC
T ss_pred             CeeEEEccCCCC-CCCcChhHhccccCCCEEECCCC-----ccceeCHHHhcCCcCCCEEeCCCCcccee--CHHHcccC
Confidence            578888864 43 34455 34556888999999888     5544  2 456788899999988877642  22233444


Q ss_pred             ccccceEEeeeecC
Q 012562          197 RLLEKLILKSCSFR  210 (461)
Q Consensus       197 p~Le~L~L~~c~~~  210 (461)
                      + |+.|+|.+|.+.
T Consensus       104 ~-L~~l~l~~N~~~  116 (347)
T 2ifg_A          104 S-LQELVLSGNPLH  116 (347)
T ss_dssp             C-CCEEECCSSCCC
T ss_pred             C-ceEEEeeCCCcc
Confidence            4 888888887643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.52  E-value=0.0046  Score=52.67  Aligned_cols=130  Identities=12%  Similarity=0.154  Sum_probs=76.8

Q ss_pred             HHHHHHHHhcCCCccEEEEecc-hhhhhccccccccCCcccCcccEEEEEEeCCCcc-hhhHhhhhccCCCcceEEEEec
Q 012562          288 CHILSKLLNELCEVKALKLSTA-FLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWV-VPSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       288 ~~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      ...+...+...+.+++|+|+++ .+..-........+. ..++|++|+++.+....+ ...+...+...+.|+.|+|..+
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            4457778888889999999887 654221111122233 456899999977765333 2223336778889999998876


Q ss_pred             cCCCccccccCcCccc--cccceeEEEE--Eee-cCChhHHHHHHHHHhcCcCcceEEEEcc
Q 012562          366 GEDCDDWKISNKSIFC--LTCHLKTVEL--IHV-AGDENELELVRFLLKNGHVLKKLSFSWM  422 (461)
Q Consensus       366 ~~~~~~~~~~~~~~~~--~~~~Lk~v~i--~~~-~g~~~e~~~~~~ll~~a~~Le~~~i~~~  422 (461)
                      .........  . ...  ..++|+.+.+  .+- -|..+...+++ .++..+.|+++.+...
T Consensus       104 ~i~~~g~~~--l-~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          104 FISGSGILA--L-VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CCCHHHHHH--H-HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred             cCCHHHHHH--H-HHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCC
Confidence            532100000  0 111  2356888888  422 23344444554 5577789999998743

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.34  E-value=0.0032  Score=56.91  Aligned_cols=78  Identities=15%  Similarity=0.115  Sum_probs=45.0

Q ss_pred             cCCeEEEEEEcceee--eCCCCcccCCCccEEEeceeccccccccC-CCccccC--cccEEEeeeEEEcCh-----hhHH
Q 012562          121 RNVQVFDLTVYGEVT--ELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFS--RLKSLDLHNVEFLDH-----NLLH  190 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~--~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~--~L~~L~L~~~~~~~~-----~~l~  190 (461)
                      +.++.|+|+.+....  .+|..+..+++|+.|+|++|     .+.. .....+.  +|++|+|.+|.+.+.     .-..
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-----~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-----ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-----CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-----ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            467777775543222  44454556777777777777     4443 2223333  777777777765531     1223


Q ss_pred             HHhhcCccccceE
Q 012562          191 KFVSSRRLLEKLI  203 (461)
Q Consensus       191 ~l~~~cp~Le~L~  203 (461)
                      .++..+|.|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            4566777777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.19  E-value=0.0011  Score=64.17  Aligned_cols=63  Identities=10%  Similarity=0.037  Sum_probs=34.6

Q ss_pred             eCCCCcccCCCccEEEeceeccccccccCCCccccCcccEEEeeeE--EEcChhhHHHHhhcCccccceEEeee
Q 012562          136 ELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNV--EFLDHNLLHKFVSSRRLLEKLILKSC  207 (461)
Q Consensus       136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~--~~~~~~~l~~l~~~cp~Le~L~L~~c  207 (461)
                      .++...|.-.+|+.+.|..+   ...+....+.. .+|+++.|...  .+..     ..+.+|++|+.+.+..+
T Consensus       126 ~I~~~aF~~~~L~~i~l~~~---i~~I~~~aF~~-~~L~~i~lp~~l~~I~~-----~aF~~c~~L~~l~l~~n  190 (401)
T 4fdw_A          126 SIPKDAFRNSQIAKVVLNEG---LKSIGDMAFFN-STVQEIVFPSTLEQLKE-----DIFYYCYNLKKADLSKT  190 (401)
T ss_dssp             EECTTTTTTCCCSEEECCTT---CCEECTTTTTT-CCCCEEECCTTCCEECS-----STTTTCTTCCEEECTTS
T ss_pred             EehHhhcccCCccEEEeCCC---ccEECHHhcCC-CCceEEEeCCCccEehH-----HHhhCcccCCeeecCCC
Confidence            33444443236888887654   11233333334 35777777641  1221     23677888888888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.79  E-value=0.017  Score=52.16  Aligned_cols=62  Identities=21%  Similarity=0.087  Sum_probs=40.3

Q ss_pred             HHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCc------chhhHhhhhccCCCcceEE
Q 012562          293 KLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADW------VVPSIISLLNCSPNLEALT  361 (461)
Q Consensus       293 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~------~~l~~~~lL~~~p~L~~L~  361 (461)
                      ..+..+++|+.|+|++|.+..+..   ...+. .+ +|++|.+..+....      .....  ++..+|+|+.|+
T Consensus       190 ~~~~~l~~L~~L~Ls~N~i~~~~~---l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~--il~~~P~L~~LD  257 (267)
T 3rw6_A          190 SIVQKAPNLKILNLSGNELKSERE---LDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISA--IRERFPKLLRLD  257 (267)
T ss_dssp             THHHHSTTCCEEECTTSCCCSGGG---GGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHH--HHHHCTTCCEES
T ss_pred             hHHhhCCCCCEEECCCCccCCchh---hhhcc-cC-CcceEEccCCcCccccCcchhHHHH--HHHHCcccCeEC
Confidence            445678899999999888765422   23333 33 88888887665421      22223  678899998883

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.73  E-value=0.04  Score=47.08  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=16.3

Q ss_pred             cccEEEeeeEEEcCh--hhHHHHhhcCccccceEEeeee
Q 012562          172 RLKSLDLHNVEFLDH--NLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       172 ~L~~L~L~~~~~~~~--~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      .|++|+|.++.+.+.  ..+...+..-..|+.|+|+.|.
T Consensus        71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            444444444444433  2233333344445555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=80.80  E-value=0.82  Score=38.88  Aligned_cols=130  Identities=12%  Similarity=0.150  Sum_probs=78.8

Q ss_pred             HHHHHHHHhcCCCccEEEEecc-hhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEec
Q 012562          288 CHILSKLLNELCEVKALKLSTA-FLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       288 ~~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      ...+..++..-+.|++|+|+.+ .+..-........+. .-..|++|+|..+.. +.....+...|+.-..|+.|+|..+
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence            4457777777788999999874 433211111112222 445899999987765 3333333337788889999999887


Q ss_pred             cCCCccccccCcCccc--cccceeEEEEEe----ecCChhHHHHHHHHHhcCcCcceEEEEcc
Q 012562          366 GEDCDDWKISNKSIFC--LTCHLKTVELIH----VAGDENELELVRFLLKNGHVLKKLSFSWM  422 (461)
Q Consensus       366 ~~~~~~~~~~~~~~~~--~~~~Lk~v~i~~----~~g~~~e~~~~~~ll~~a~~Le~~~i~~~  422 (461)
                      ......-  ..+ .+.  .-..|+.+.+.+    .-|...+..+++.+ +.-+.|.++.+.+.
T Consensus       109 ~Ig~~Ga--~al-a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          109 FLTPELL--ARL-LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFA  167 (197)
T ss_dssp             BCCHHHH--HHH-HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCC
T ss_pred             cCCHHHH--HHH-HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCC
Confidence            6321000  000 011  224588888863    33667777788765 55577999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	461
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	5e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	1e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-04

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL 51
          D +  LP+ +   + SF+E  D+++A+   R WR L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 16 DRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVPYL 58
          D + SLP  +  +IF++++  D++ +  VS+ W  +      L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 16  DRLCSLPEP----VIHQIFSFMETIDVVRASAVSRKWRYLWLSVP---YLSFDMSTISSN 68
           D + +LP      +   I S+++   +  A  V ++W  +         L   M    S 
Sbjct: 9   DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSL 68

Query: 69  PQEIWSHEKFKDFVNWVLLSQSGSVSIQRFR-LYCLSYANDYTVYR-WVC 116
            + +     +  ++         +     +R LY     +  T+   W C
Sbjct: 69  WRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRC 118

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 20 SLPEPVIHQIFSFMETIDVVRASAVSRKWRYL 51
          SLP+ ++  IFS +   ++++ S V ++W  L
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	461
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.08
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.73
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.69
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.66
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.4
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.27
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.27
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.26
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.23
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.23
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.17
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.17
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.17
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.1
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.07
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.01
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.96
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.55
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.49
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.0
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.98
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.93
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.34
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.3

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.9e-12  Score=114.43  Aligned_cols=58  Identities=21%  Similarity=0.358  Sum_probs=32.7

Q ss_pred             CCCccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          144 CESLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      ..+|++|+|++|     .+..    ..+..+++|++|+|.++.+++. .+.. +..+|+|+.|++++|.
T Consensus        45 ~~~L~~LdLs~~-----~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~-~~~~-l~~~~~L~~L~Ls~c~  106 (284)
T d2astb2          45 PFRVQHMDLSNS-----VIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNT-LAKNSNLVRLNLSGCS  106 (284)
T ss_dssp             CBCCCEEECTTC-----EECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHH-HTTCTTCSEEECTTCB
T ss_pred             CCCCCEEECCCC-----ccCHHHHHHHHHhCCCcccccccccCCCcH-HHHH-HhcCCCCcCccccccc
Confidence            446777777766     3332    1234566666666666655443 3333 4456666666666653

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.6e-11  Score=72.51  Aligned_cols=36  Identities=28%  Similarity=0.480  Sum_probs=33.3

Q ss_pred             CCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhc
Q 012562           18 LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWL   53 (461)
Q Consensus        18 is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~   53 (461)
                      ++.||+||+.+||+|||.+|.++++.|||+|+++-.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999998743

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.7e-12  Score=116.29  Aligned_cols=82  Identities=28%  Similarity=0.261  Sum_probs=60.6

Q ss_pred             cCCeEEEEEEccee-eeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeE-EEcChhhHHHHhhc
Q 012562          121 RNVQVFDLTVYGEV-TELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNV-EFLDHNLLHKFVSS  195 (461)
Q Consensus       121 ~~l~~L~l~~~~~~-~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~-~~~~~~~l~~l~~~  195 (461)
                      .++++|+++..... ..++..+..|++|++|+|.+|     .+.+   .....+++|++|+|.++ .+++. ++..++.+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~-----~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-~l~~l~~~  119 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-----RLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSS  119 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-----BCCHHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHH
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCccccccccc-----CCCcHHHHHHhcCCCCcCcccccccccccc-ccchhhHH
Confidence            37888988433211 123333446999999999999     5544   23457899999999986 45555 88888999


Q ss_pred             CccccceEEeeee
Q 012562          196 RRLLEKLILKSCS  208 (461)
Q Consensus       196 cp~Le~L~L~~c~  208 (461)
                      ||+|++|+|++|.
T Consensus       120 ~~~L~~L~ls~c~  132 (284)
T d2astb2         120 CSRLDELNLSWCF  132 (284)
T ss_dssp             CTTCCEEECCCCT
T ss_pred             HHhcccccccccc
Confidence            9999999999984

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=1.4e-09  Score=95.28  Aligned_cols=56  Identities=20%  Similarity=0.086  Sum_probs=29.1

Q ss_pred             hcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEE
Q 012562          296 NELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIY  363 (461)
Q Consensus       296 ~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~  363 (461)
                      ..+++|+.|++++|.+..+.      .+. .+++|++|+++.+....  ++   -++.+++|+.|+|.
T Consensus       170 ~~l~~L~~L~Ls~n~l~~l~------~l~-~l~~L~~L~Ls~N~lt~--i~---~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISDIS------PLA-SLPNLIEVHLKNNQISD--VS---PLANTSNLFIVTLT  225 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCG------GGG-GCTTCCEEECTTSCCCB--CG---GGTTCTTCCEEEEE
T ss_pred             cccccceecccCCCccCCCh------hhc-CCCCCCEEECcCCcCCC--Cc---ccccCCCCCEEEee
Confidence            45666666666666543221      122 44566666665543221  11   24566677766664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.69  E-value=4.1e-10  Score=103.91  Aligned_cols=219  Identities=17%  Similarity=0.118  Sum_probs=105.7

Q ss_pred             CCeEEEEEEc--ceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          122 NVQVFDLTVY--GEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       122 ~l~~L~l~~~--~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      +|.+|+|...  .+...+|..+..+++|++|+|+++.    .+..  | .+..+++|++|+|+++.+.+.  ....+..+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N----~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~--~~~~~~~~  124 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGA--IPDFLSQI  124 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET----TEESCCCGGGGGCTTCSEEEEEEECCEEE--CCGGGGGC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccc----ccccccccccccccccchhhhcccccccc--ccccccch
Confidence            4666776543  2234677777777777777777530    3332  3 456677777777777766542  23345567


Q ss_pred             ccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeE-EEEecCC-eeeEEEecCCCCceeeeCCCCce--EE
Q 012562          197 RLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYK-VKIACPN-LVSFNFLASWAPDFAFEDLDSLQ--NA  271 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~-~~~~~p~-L~~L~l~~~~~~~~~~~~~~~L~--~l  271 (461)
                      +.|+.+++..|...+...-.+. .++++.+.+..+.+  .+.+. .....++ ++.+.+.++............+.  .+
T Consensus       125 ~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l--~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l  202 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI--SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV  202 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC--EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred             hhhcccccccccccccCchhhccCcccceeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence            7777777776643221111111 25566666665542  10100 0001222 24444443222111111111111  22


Q ss_pred             EEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhh
Q 012562          272 FIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLL  351 (461)
Q Consensus       272 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL  351 (461)
                      ++.....         ..........+++++.|.+..+.+...     +..+. .+++|+.|+++.+........   -+
T Consensus       203 ~l~~~~~---------~~~~~~~~~~~~~l~~l~~~~~~l~~~-----~~~~~-~~~~L~~L~Ls~N~l~g~iP~---~l  264 (313)
T d1ogqa_         203 DLSRNML---------EGDASVLFGSDKNTQKIHLAKNSLAFD-----LGKVG-LSKNLNGLDLRNNRIYGTLPQ---GL  264 (313)
T ss_dssp             ECCSSEE---------EECCGGGCCTTSCCSEEECCSSEECCB-----GGGCC-CCTTCCEEECCSSCCEECCCG---GG
T ss_pred             ccccccc---------ccccccccccccccccccccccccccc-----ccccc-cccccccccCccCeecccCCh---HH
Confidence            2210000         000122233566777777777654311     12233 456777777766654332222   35


Q ss_pred             ccCCCcceEEEEecc
Q 012562          352 NCSPNLEALTIYFEG  366 (461)
Q Consensus       352 ~~~p~L~~L~l~~~~  366 (461)
                      .++|+|+.|++..+.
T Consensus       265 ~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         265 TQLKFLHSLNVSFNN  279 (313)
T ss_dssp             GGCTTCCEEECCSSE
T ss_pred             hCCCCCCEEECcCCc
Confidence            667788888777653

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.6e-09  Score=78.77  Aligned_cols=38  Identities=32%  Similarity=0.563  Sum_probs=36.1

Q ss_pred             CCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhh
Q 012562           15 GDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLW   52 (461)
Q Consensus        15 ~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw   52 (461)
                      .|.|+.||+||+.+||+|||.+|+++++.|||+|+.+.
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.66  E-value=1e-09  Score=94.06  Aligned_cols=56  Identities=11%  Similarity=0.123  Sum_probs=29.1

Q ss_pred             CCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          144 CESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      +++|++|+++++     .+.. ++...+++|++|+|+++.+++-   .. +.++|.|++|++.+|.
T Consensus        39 l~~l~~L~l~~~-----~i~~l~~l~~l~nL~~L~Ls~N~l~~~---~~-l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          39 LDQVTTLQADRL-----GIKSIDGVEYLNNLTQINFSNNQLTDI---TP-LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HTTCCEEECTTS-----CCCCCTTGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSC
T ss_pred             hcCCCEEECCCC-----CCCCccccccCCCcCcCccccccccCc---cc-ccCCcccccccccccc
Confidence            345555555555     4433 3344555666666665555432   11 4455666666665554

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=3.4e-09  Score=79.55  Aligned_cols=42  Identities=24%  Similarity=0.475  Sum_probs=37.7

Q ss_pred             CCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhccCC
Q 012562           15 GDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVP   56 (461)
Q Consensus        15 ~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~~~   56 (461)
                      .|.|+.||+||+.+||++|+.+|.++++.|||+|+++...-+
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~   44 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST   44 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCS
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH
Confidence            588999999999999999999999999999999997654433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=1.6e-08  Score=87.13  Aligned_cols=56  Identities=20%  Similarity=0.194  Sum_probs=27.3

Q ss_pred             cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEe
Q 012562          297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYF  364 (461)
Q Consensus       297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~  364 (461)
                      .+++++.+.+.++.+..+.      .+. .+++|++|+++.+....  ++   -+.++++|+.|+|.+
T Consensus       154 ~l~~L~~l~l~~n~l~~i~------~l~-~l~~L~~L~Ls~N~i~~--l~---~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQISDIV------PLA-GLTKLQNLYLSKNHISD--LR---ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GCTTCSEEECCSSCCCCCG------GGT-TCTTCCEEECCSSCCCB--CG---GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccccc------ccc-CCCCCCEEECCCCCCCC--Ch---hhcCCCCCCEEEccC
Confidence            4556666666665443211      122 34466666665443211  11   245566666666653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.50  E-value=5.8e-10  Score=102.92  Aligned_cols=218  Identities=13%  Similarity=0.048  Sum_probs=131.0

Q ss_pred             cCCeEEEEEE-cceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTV-YGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~-~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      ..+++|+|+. +.....+|..+..+++|++|+|+++     .+..   .....+++|+.+++..+.+..  .+..-+.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N-----~l~~~~~~~~~~~~~L~~l~l~~N~~~~--~~p~~l~~l  148 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-----NVSGAIPDFLSQIKTLVTLDFSYNALSG--TLPPSISSL  148 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-----CCEEECCGGGGGCTTCCEEECCSSEEES--CCCGGGGGC
T ss_pred             ccccccccccccccccccccccccccccchhhhccc-----cccccccccccchhhhcccccccccccc--cCchhhccC
Confidence            5899999975 5556689999999999999999999     5443   246678999999999988775  344557899


Q ss_pred             ccccceEEeeeecCCceEEEE-ecCC-cCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCC---CCceeeeCCCCceEE
Q 012562          197 RLLEKLILKSCSFRDFKILDI-SSTS-LKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASW---APDFAFEDLDSLQNA  271 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i-~~~~-L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~---~~~~~~~~~~~L~~l  271 (461)
                      +.|+.+++++|.+.+..+-.+ ...+ ++.+.+..+.+  .+.....+....+..+.+....   .....+..+++++.+
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l--~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l  226 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE--EEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             cccceeeccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence            999999999875332110000 0123 35555554442  0000001112233344444321   122234567778887


Q ss_pred             EEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhh
Q 012562          272 FIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLL  351 (461)
Q Consensus       272 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL  351 (461)
                      ++..+... ..        . ..+..+++++.|++++|.+..    ..+..+. .+++|++|+++.+...... +.   +
T Consensus       227 ~~~~~~l~-~~--------~-~~~~~~~~L~~L~Ls~N~l~g----~iP~~l~-~L~~L~~L~Ls~N~l~g~i-P~---~  287 (313)
T d1ogqa_         227 HLAKNSLA-FD--------L-GKVGLSKNLNGLDLRNNRIYG----TLPQGLT-QLKFLHSLNVSFNNLCGEI-PQ---G  287 (313)
T ss_dssp             ECCSSEEC-CB--------G-GGCCCCTTCCEEECCSSCCEE----CCCGGGG-GCTTCCEEECCSSEEEEEC-CC---S
T ss_pred             cccccccc-cc--------c-cccccccccccccCccCeecc----cCChHHh-CCCCCCEEECcCCcccccC-CC---c
Confidence            77322210 00        1 123457889999999987641    1233444 6779999999776443222 21   2


Q ss_pred             ccCCCcceEEEEecc
Q 012562          352 NCSPNLEALTIYFEG  366 (461)
Q Consensus       352 ~~~p~L~~L~l~~~~  366 (461)
                      ..+++|+.+.+.+++
T Consensus       288 ~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         288 GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTGGGSCGGGTCSSS
T ss_pred             ccCCCCCHHHhCCCc
Confidence            445667766665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.1e-09  Score=96.62  Aligned_cols=127  Identities=16%  Similarity=0.126  Sum_probs=70.0

Q ss_pred             eeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCC
Q 012562          135 TELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRD  211 (461)
Q Consensus       135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~  211 (461)
                      ..+|..+.  ++|++|+|+++     .+..   ..+..+++|++|+|.++.++.-   + ....+|.|+.|+|++|.+..
T Consensus        23 ~~iP~~lp--~~l~~L~Ls~N-----~i~~l~~~~f~~l~~L~~L~L~~N~l~~l---~-~~~~l~~L~~L~Ls~N~l~~   91 (266)
T d1p9ag_          23 TALPPDLP--KDTTILHLSEN-----LLYTFSLATLMPYTRLTQLNLDRAELTKL---Q-VDGTLPVLGTLDLSHNQLQS   91 (266)
T ss_dssp             SSCCSCCC--TTCCEEECTTS-----CCSEEEGGGGTTCTTCCEEECTTSCCCEE---E-CCSCCTTCCEEECCSSCCSS
T ss_pred             CeeCcCcC--cCCCEEECcCC-----cCCCcCHHHhhcccccccccccccccccc---c-cccccccccccccccccccc
Confidence            34565443  46778888877     4433   2355677788888877766532   1 13467778888887776443


Q ss_pred             ceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEE
Q 012562          212 FKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFI  273 (461)
Q Consensus       212 ~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l  273 (461)
                      ........++|+.|.+..+........ .....+++++|.+.++....+   .+..+++++.+++
T Consensus        92 ~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          92 LPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccccccccccceeecc-ccccccccccccccccccceeccccccccccchhccc
Confidence            322111236777777776653111100 112456778887776443322   1233445555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=1.5e-08  Score=88.55  Aligned_cols=183  Identities=16%  Similarity=0.112  Sum_probs=125.0

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .++++|++.... ...++ .+..+++|++|+++++     .+.. +.+..+++|++|.+.++.+++-   . -+.+++.|
T Consensus        41 ~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~ls~n-----~i~~~~~l~~l~~l~~l~~~~n~~~~i---~-~l~~l~~L  109 (227)
T d1h6ua2          41 DGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-----QITDLAPLKNLTKITELELSGNPLKNV---S-AIAGLQSI  109 (227)
T ss_dssp             HTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-----CCCCCGGGTTCCSCCEEECCSCCCSCC---G-GGTTCTTC
T ss_pred             CCcCEEECCCCC-CCcch-hHhcCCCCcEeecCCc-----eeecccccccccccccccccccccccc---c-cccccccc
Confidence            478888885433 23453 4677999999999999     6655 4577899999999998877643   2 25689999


Q ss_pred             cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc-eeeeCCCCceEEEEEEEee
Q 012562          200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD-FAFEDLDSLQNAFIFFDII  278 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~L~~l~l~~~~~  278 (461)
                      +.|.+.+|...+.... ...+.++.+.+..+.......   ...+++|++|.+.++.... ..+.++++|+.+++..+..
T Consensus       110 ~~l~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         110 KTLDLTSTQITDVTPL-AGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             CEEECTTSCCCCCGGG-TTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             cccccccccccccchh-ccccchhhhhchhhhhchhhh---hccccccccccccccccccchhhcccccceecccCCCcc
Confidence            9999988764432210 123677778777665321111   2367899999998865433 2367889999999943322


Q ss_pred             cCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEE
Q 012562          279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLS  336 (461)
Q Consensus       279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~  336 (461)
                        .+        +. .+.++++|+.|++++|.+..+.      .+. .+++|+.|+++
T Consensus       186 --~~--------l~-~l~~l~~L~~L~Ls~N~lt~i~------~l~-~l~~L~~L~ls  225 (227)
T d1h6ua2         186 --SD--------IS-PLASLPNLIEVHLKNNQISDVS------PLA-NTSNLFIVTLT  225 (227)
T ss_dssp             --CC--------CG-GGGGCTTCCEEECTTSCCCBCG------GGT-TCTTCCEEEEE
T ss_pred             --CC--------Ch-hhcCCCCCCEEECcCCcCCCCc------ccc-cCCCCCEEEee
Confidence              11        11 2568999999999998765332      233 66799999985

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=5.7e-08  Score=83.58  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=82.3

Q ss_pred             CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562          122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE  200 (461)
Q Consensus       122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le  200 (461)
                      .+++|++.... ...++ .+..+++|++|+|++|     .+.. +....+++|+.|++.++.+++-   . -+.++|.|+
T Consensus        47 ~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~L~~n-----~i~~l~~~~~l~~L~~L~l~~n~i~~l---~-~l~~l~~L~  115 (210)
T d1h6ta2          47 SIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-----KLTDIKPLANLKNLGWLFLDENKVKDL---S-SLKDLKKLK  115 (210)
T ss_dssp             TCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCCCG---G-GGTTCTTCC
T ss_pred             CccEEECcCCC-CCCch-hHhhCCCCCEEeCCCc-----cccCccccccCcccccccccccccccc---c-ccccccccc
Confidence            46666553221 11222 3445667777777777     4444 3345567777777776666532   2 245567777


Q ss_pred             ceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEeec
Q 012562          201 KLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDIID  279 (461)
Q Consensus       201 ~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~~  279 (461)
                      .|++.+|....+..  +                        ...++|+.+.+.++..... .+..+++|+.+.+..+.. 
T Consensus       116 ~L~l~~~~~~~~~~--l------------------------~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l-  168 (210)
T d1h6ta2         116 SLSLEHNGISDING--L------------------------VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI-  168 (210)
T ss_dssp             EEECTTSCCCCCGG--G------------------------GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC-
T ss_pred             cccccccccccccc--c------------------------cccccccccccccccccccccccccccccccccccccc-
Confidence            77776654322110  0                        1233444444433222111 122344455444421110 


Q ss_pred             CCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEE
Q 012562          280 RDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLS  336 (461)
Q Consensus       280 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~  336 (461)
                       .+        +. -+..+++|+.|++++|.+..+      ..+. .+++|++|++.
T Consensus       169 -~~--------i~-~l~~l~~L~~L~Ls~N~i~~l------~~l~-~l~~L~~L~Ls  208 (210)
T d1h6ta2         169 -SD--------IV-PLAGLTKLQNLYLSKNHISDL------RALA-GLKNLDVLELF  208 (210)
T ss_dssp             -CC--------CG-GGTTCTTCCEEECCSSCCCBC------GGGT-TCTTCSEEEEE
T ss_pred             -cc--------cc-cccCCCCCCEEECCCCCCCCC------hhhc-CCCCCCEEEcc
Confidence             00        11 145788999999998876532      2244 66799999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.4e-08  Score=91.01  Aligned_cols=81  Identities=12%  Similarity=0.040  Sum_probs=44.8

Q ss_pred             CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeE
Q 012562          171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSF  250 (461)
Q Consensus       171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L  250 (461)
                      ++|++|+|.++.++.-  -...+.++++|++|+|++|.+..+... ...++|+.|.++.|.+..  ........++|++|
T Consensus        31 ~~l~~L~Ls~N~i~~l--~~~~f~~l~~L~~L~L~~N~l~~l~~~-~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          31 KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVL  105 (266)
T ss_dssp             TTCCEEECTTSCCSEE--EGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEE
T ss_pred             cCCCEEECcCCcCCCc--CHHHhhccccccccccccccccccccc-cccccccccccccccccc--cccccccccccccc
Confidence            4677777777765532  122356677777777777654322110 113677777777766411  11111245677777


Q ss_pred             EEecCC
Q 012562          251 NFLASW  256 (461)
Q Consensus       251 ~l~~~~  256 (461)
                      .++++.
T Consensus       106 ~l~~~~  111 (266)
T d1p9ag_         106 DVSFNR  111 (266)
T ss_dssp             ECCSSC
T ss_pred             cccccc
Confidence            776643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.27  E-value=1.5e-08  Score=92.80  Aligned_cols=38  Identities=21%  Similarity=0.124  Sum_probs=16.4

Q ss_pred             cccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee
Q 012562          168 VGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC  207 (461)
Q Consensus       168 ~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c  207 (461)
                      ..+++|++|++.++.+..-  ....+.+++.|+.|++.+|
T Consensus        52 ~~l~~L~~L~l~~n~~~~i--~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          52 KNLKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSS
T ss_pred             hcccccccccccccccccc--chhhhhCCCccCEecccCC
Confidence            3444555555544443321  1122344455555555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.8e-08  Score=89.02  Aligned_cols=197  Identities=17%  Similarity=0.105  Sum_probs=90.3

Q ss_pred             CCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee-cCCceEEEEe-c
Q 012562          145 ESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS-FRDFKILDIS-S  219 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~-~~~~~~~~i~-~  219 (461)
                      +++++|+|+++     .+..   ..+..+++|++|+++++.+..-  ......+++.++.+.+..+. ...+...... .
T Consensus        32 ~~~~~L~Ls~N-----~i~~i~~~~f~~l~~L~~L~ls~n~l~~i--~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  104 (284)
T d1ozna_          32 AASQRIFLHGN-----RISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (284)
T ss_dssp             TTCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CCCCEEECcCC-----cCCCCCHHHhhcccccccccccccccccc--ccccccccccccccccccccccccccchhhccc
Confidence            35666666666     3322   2345566666666666554432  12223445555555543321 1111110111 1


Q ss_pred             CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh
Q 012562          220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN  296 (461)
Q Consensus       220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~  296 (461)
                      ++|++|.+..+........ ..-..++|+.+.+.++....+   .+..++.|+++++.-+..  ...       ....+.
T Consensus       105 ~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l--~~l-------~~~~f~  174 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--SSV-------PERAFR  174 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CEE-------CTTTTT
T ss_pred             ccCCEEecCCccccccccc-ccchhcccchhhhccccccccChhHhccccchhhcccccCcc--ccc-------chhhhc
Confidence            4566666665553111000 111355677777776443322   233445555555521110  000       011233


Q ss_pred             cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      ++++++.|.+..|.+..+.    +..+. .+++|++|+++.+...... ..  .+..+++|+.|.+.+++
T Consensus       175 ~l~~L~~l~l~~N~l~~i~----~~~f~-~l~~L~~L~l~~N~i~~~~-~~--~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVH----PHAFR-DLGRLMTLYLFANNLSALP-TE--ALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TCTTCCEEECCSSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCCC-HH--HHTTCTTCCEEECCSSC
T ss_pred             cccccchhhhhhccccccC----hhHhh-hhhhccccccccccccccc-cc--ccccccccCEEEecCCC
Confidence            5666777777666544221    22233 4456677766555432211 11  34566777777666543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.26  E-value=7.6e-08  Score=90.68  Aligned_cols=168  Identities=18%  Similarity=0.140  Sum_probs=78.4

Q ss_pred             cccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCe
Q 012562          168 VGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNL  247 (461)
Q Consensus       168 ~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L  247 (461)
                      ..+++++.|.+.++.+++.   . -...++.|++|++.+|...++..+ ...++|+.|.+..+.+.+...   ...+++|
T Consensus       194 ~~l~~~~~l~l~~n~i~~~---~-~~~~~~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~l~~n~l~~~~~---~~~~~~L  265 (384)
T d2omza2         194 AKLTNLESLIATNNQISDI---T-PLGILTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAP---LSGLTKL  265 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCC---G-GGGGCTTCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCCCGG---GTTCTTC
T ss_pred             ccccccceeeccCCccCCC---C-cccccCCCCEEECCCCCCCCcchh-hcccccchhccccCccCCCCc---ccccccC
Confidence            3455555555555544432   0 023455555555555543332110 012455555555544311111   1134566


Q ss_pred             eeEEEecCCCCce-eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcc
Q 012562          248 VSFNFLASWAPDF-AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNS  326 (461)
Q Consensus       248 ~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~  326 (461)
                      ++|.++++..... .+..++.++.+.+..+..  .+        + ..+..+++++.|+++++.+..+.      .+. .
T Consensus       266 ~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l--~~--------~-~~~~~~~~l~~L~ls~n~l~~l~------~l~-~  327 (384)
T d2omza2         266 TELKLGANQISNISPLAGLTALTNLELNENQL--ED--------I-SPISNLKNLTYLTLYFNNISDIS------PVS-S  327 (384)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCSEEECCSSCC--SC--------C-GGGGGCTTCSEEECCSSCCSCCG------GGG-G
T ss_pred             CEeeccCcccCCCCcccccccccccccccccc--cc--------c-cccchhcccCeEECCCCCCCCCc------ccc-c
Confidence            6666655333221 233445555554421110  00        0 11345667777777776554221      123 5


Q ss_pred             cCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562          327 FNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       327 ~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      +++|++|+++.+....  ++   -+..+|+|+.|+++.+.
T Consensus       328 l~~L~~L~L~~n~l~~--l~---~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         328 LTKLQRLFFANNKVSD--VS---SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CTTCCEEECCSSCCCC--CG---GGGGCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCCCCC--Ch---hHcCCCCCCEEECCCCc
Confidence            5677777776554321  12   24567777777776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.23  E-value=6.7e-08  Score=82.38  Aligned_cols=159  Identities=18%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      .++++|++.... ...+ ..+..+++|++|+|++|     .+.. +.+..+++|++|++.++.+..-   . -+.+++.|
T Consensus        40 ~~l~~L~l~~~~-i~~l-~~l~~l~nL~~L~Ls~N-----~l~~~~~l~~l~~L~~L~l~~n~~~~~---~-~l~~l~~L  108 (199)
T d2omxa2          40 DQVTTLQADRLG-IKSI-DGVEYLNNLTQINFSNN-----QLTDITPLKNLTKLVDILMNNNQIADI---T-PLANLTNL  108 (199)
T ss_dssp             TTCCEEECTTSC-CCCC-TTGGGCTTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCCCC---G-GGTTCTTC
T ss_pred             cCCCEEECCCCC-CCCc-cccccCCCcCcCccccc-----cccCcccccCCcccccccccccccccc---c-cccccccc
Confidence            578888874432 1223 23556899999999999     6665 4577899999999999877653   2 26789999


Q ss_pred             cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeec
Q 012562          200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIID  279 (461)
Q Consensus       200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~  279 (461)
                      +.|++.+|.......+ ...++|+.|.++++.+..   +......++|++|.+.++....                    
T Consensus       109 ~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~--------------------  164 (199)
T d2omxa2         109 TGLTLFNNQITDIDPL-KNLTNLNRLELSSNTISD---ISALSGLTSLQQLNFSSNQVTD--------------------  164 (199)
T ss_dssp             SEEECCSSCCCCCGGG-TTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCSSCCCC--------------------
T ss_pred             cccccccccccccccc-chhhhhHHhhhhhhhhcc---cccccccccccccccccccccC--------------------
Confidence            9999998754332110 012455555555444211   1000133444555444422111                    


Q ss_pred             CCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEE
Q 012562          280 RDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSL  333 (461)
Q Consensus       280 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L  333 (461)
                                 +. -+.++++|+.|++++|.+..+.      .+. .+++|++|
T Consensus       165 -----------l~-~l~~l~~L~~L~ls~N~i~~i~------~l~-~L~~L~~L  199 (199)
T d2omxa2         165 -----------LK-PLANLTTLERLDISSNKVSDIS------VLA-KLTNLESL  199 (199)
T ss_dssp             -----------CG-GGTTCTTCCEEECCSSCCCCCG------GGG-GCTTCSEE
T ss_pred             -----------Cc-cccCCCCCCEEECCCCCCCCCc------ccc-CCCCCCcC
Confidence                       11 1457889999999998765322      233 55677775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.23  E-value=2.1e-08  Score=93.44  Aligned_cols=132  Identities=14%  Similarity=-0.033  Sum_probs=77.8

Q ss_pred             HHHHHHHHhcCCCccEEEEecchhhhhcccc-ccccCCcccCcccEEEEEEeCCCcc-hhhHhhhhccCCCcceEEEEec
Q 012562          288 CHILSKLLNELCEVKALKLSTAFLRFHFVLE-ERGFIPNSFNYLKSLVLSVSMADWV-VPSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       288 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~-~l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      ...+...+...+.++.|.+..+.+....... ....++ .+++|++|+++.+..... .......+..+|+|+.|.+..+
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cccccchhhhhhhhcccccccccccccccccchhhhhc-chhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            3456677788889999999888654211111 122344 677999999977755222 2222236789999999999876


Q ss_pred             cCCCccccc-cCcCccccccceeEEEEEeec-CChhHHHHHHHHHhcCcCcceEEEE
Q 012562          366 GEDCDDWKI-SNKSIFCLTCHLKTVELIHVA-GDENELELVRFLLKNGHVLKKLSFS  420 (461)
Q Consensus       366 ~~~~~~~~~-~~~~~~~~~~~Lk~v~i~~~~-g~~~e~~~~~~ll~~a~~Le~~~i~  420 (461)
                      .-....... ...-..+....|+++.+.+=. +......+++.+-.+.+.|+++.+.
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECC
Confidence            532100000 000011223567888776322 2233445666665688999999876

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.6e-07  Score=72.42  Aligned_cols=37  Identities=22%  Similarity=0.547  Sum_probs=34.4

Q ss_pred             CCCCCCCC----hHHHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562           15 GDRLCSLP----EPVIHQIFSFMETIDVVRASAVSRKWRYL   51 (461)
Q Consensus        15 ~D~is~LP----d~iL~~Ils~Lp~~d~~~~s~vskrWr~l   51 (461)
                      .|.|+.||    |||+.+||+||+.+|.++++.|||+|+.+
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58899999    59999999999999999999999999865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1e-07  Score=78.26  Aligned_cols=38  Identities=11%  Similarity=0.122  Sum_probs=19.4

Q ss_pred             ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee
Q 012562          167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC  207 (461)
Q Consensus       167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c  207 (461)
                      +....+|++|+|.++.++.   ++.+..+++.|+.|+|++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~---i~~~~~~l~~L~~L~Ls~N   51 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV---IENLGATLDQFDAIDFSDN   51 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS---CCCGGGGTTCCSEEECCSS
T ss_pred             ccCcCcCcEEECCCCCCCc---cCccccccccCCEEECCCC
Confidence            3344455555555555442   2233445566666666665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.17  E-value=9.1e-08  Score=90.15  Aligned_cols=189  Identities=16%  Similarity=0.126  Sum_probs=127.9

Q ss_pred             CcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562          140 CLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS  218 (461)
Q Consensus       140 ~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~  218 (461)
                      ....++++..|.++++     .+.. +....+++|++|++.++.+++-   . .+..++.|+.|++.+|.+.+...+ ..
T Consensus       192 ~~~~l~~~~~l~l~~n-----~i~~~~~~~~~~~L~~L~l~~n~l~~~---~-~l~~l~~L~~L~l~~n~l~~~~~~-~~  261 (384)
T d2omza2         192 VLAKLTNLESLIATNN-----QISDITPLGILTNLDELSLNGNQLKDI---G-TLASLTNLTDLDLANNQISNLAPL-SG  261 (384)
T ss_dssp             GGGGCTTCSEEECCSS-----CCCCCGGGGGCTTCCEEECCSSCCCCC---G-GGGGCTTCSEEECCSSCCCCCGGG-TT
T ss_pred             ccccccccceeeccCC-----ccCCCCcccccCCCCEEECCCCCCCCc---c-hhhcccccchhccccCccCCCCcc-cc
Confidence            3445788999999998     5555 3456788999999999887654   2 356889999999999876554321 12


Q ss_pred             cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhc
Q 012562          219 STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNE  297 (461)
Q Consensus       219 ~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  297 (461)
                      .++|+.|.+.++.+.   .+.-....+.++.+.+.++..... .+..+++++.+++..+..  .+        +. .+..
T Consensus       262 ~~~L~~L~l~~~~l~---~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l--~~--------l~-~l~~  327 (384)
T d2omza2         262 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI--SD--------IS-PVSS  327 (384)
T ss_dssp             CTTCSEEECCSSCCC---CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC--SC--------CG-GGGG
T ss_pred             cccCCEeeccCcccC---CCCccccccccccccccccccccccccchhcccCeEECCCCCC--CC--------Cc-cccc
Confidence            478999999877642   111112567778888777544333 256678888888843321  11        11 2567


Q ss_pred             CCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEe
Q 012562          298 LCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYF  364 (461)
Q Consensus       298 l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~  364 (461)
                      +++|+.|++++|.+..+.      .+. .+++|++|+++.+.... ..    -+.++|+|+.|+|..
T Consensus       328 l~~L~~L~L~~n~l~~l~------~l~-~l~~L~~L~l~~N~l~~-l~----~l~~l~~L~~L~L~~  382 (384)
T d2omza2         328 LTKLQRLFFANNKVSDVS------SLA-NLTNINWLSAGHNQISD-LT----PLANLTRITQLGLND  382 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG------GGG-GCTTCCEEECCSSCCCB-CG----GGTTCTTCSEEECCC
T ss_pred             CCCCCEEECCCCCCCCCh------hHc-CCCCCCEEECCCCcCCC-Ch----hhccCCCCCEeeCCC
Confidence            999999999999765332      233 56799999998775432 11    257899999999865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.6e-08  Score=81.92  Aligned_cols=30  Identities=7%  Similarity=-0.029  Sum_probs=15.4

Q ss_pred             ecCCeeeEEEecCCCCce------eeeCCCCceEEE
Q 012562          243 ACPNLVSFNFLASWAPDF------AFEDLDSLQNAF  272 (461)
Q Consensus       243 ~~p~L~~L~l~~~~~~~~------~~~~~~~L~~l~  272 (461)
                      .+|+|++|.+.++.....      .+..+|+|+.++
T Consensus       110 ~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         110 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            456666666666432211      234566666544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.13  E-value=9.4e-08  Score=87.27  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=42.5

Q ss_pred             cCCeEEEEEEcceeeeCCCC-cccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPHC-LVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      +++++|+|+.+. ...+|.. +..+++|++|+++++     .+..  | .+..+++|++|++.++.++.-   .  -..+
T Consensus        31 ~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n-----~~~~i~~~~f~~l~~L~~L~l~~n~l~~l---~--~~~~   99 (305)
T d1xkua_          31 PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN-----KISKISPGAFAPLVKLERLYLSKNQLKEL---P--EKMP   99 (305)
T ss_dssp             TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSSCCSBC---C--SSCC
T ss_pred             CCCCEEECcCCc-CCCcChhHhhccccccccccccc-----cccccchhhhhCCCccCEecccCCccCcC---c--cchh
Confidence            356667665442 3455553 445677777777777     3333  2 355677777777776655421   1  1123


Q ss_pred             ccccceEEeeee
Q 012562          197 RLLEKLILKSCS  208 (461)
Q Consensus       197 p~Le~L~L~~c~  208 (461)
                      +.|+.|.+..+.
T Consensus       100 ~~l~~L~~~~n~  111 (305)
T d1xkua_         100 KTLQELRVHENE  111 (305)
T ss_dssp             TTCCEEECCSSC
T ss_pred             hhhhhhhccccc
Confidence            455666655543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.10  E-value=1.3e-08  Score=86.74  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=58.5

Q ss_pred             CCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEE
Q 012562          137 LPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKIL  215 (461)
Q Consensus       137 lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~  215 (461)
                      +|..+..+++|++|+|+++     .+.. +.+..+++|++|+|++|.+++-   +.+...++.|+.|++.+|.+..+.. 
T Consensus        40 l~~sl~~L~~L~~L~Ls~n-----~I~~i~~l~~l~~L~~L~Ls~N~i~~i---~~~~~~~~~L~~L~l~~N~i~~l~~-  110 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSLGRNLIKKI---ENLDAVADTLEELWISYNQIASLSG-  110 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEE-----EESCCCCHHHHTTCCEEECCEEEECSC---SSHHHHHHHCCEEECSEEECCCHHH-
T ss_pred             hhhHHhcccccceeECccc-----CCCCcccccCCccccChhhcccccccc---ccccccccccccccccccccccccc-
Confidence            3344555667777777777     5444 4455677777777777766542   2233345667777777765443221 


Q ss_pred             EEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562          216 DISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS  255 (461)
Q Consensus       216 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~  255 (461)
                      ....++|+.|.+.+|.+.+...+...-.+|+|++|.++|+
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCC
Confidence            0012456666666555311111110114567777777663

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=1.2e-07  Score=73.86  Aligned_cols=59  Identities=19%  Similarity=0.185  Sum_probs=29.9

Q ss_pred             cccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          141 LVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       141 l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      +..+++|++|+++++     .+.. | .+..+++|++|+++++.+++-   +. +..+|.|+.|++.+|.
T Consensus        16 l~~l~~L~~L~ls~N-----~l~~lp~~~~~l~~L~~L~l~~N~i~~l---~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3          16 LEQLLLVTHLDLSHN-----RLRALPPALAALRCLEVLQASDNALENV---DG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             GGGGTTCCEEECCSS-----CCCCCCGGGGGCTTCCEEECCSSCCCCC---GG-GTTCSSCCEEECCSSC
T ss_pred             cccCCCCCEEECCCC-----ccCcchhhhhhhhccccccccccccccc---Cc-cccccccCeEECCCCc
Confidence            444555666666555     3333 2 344555555665555555432   11 3455555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.3e-07  Score=86.57  Aligned_cols=166  Identities=14%  Similarity=0.066  Sum_probs=83.8

Q ss_pred             CCeeeEEEecCCCCcee-------eeCCCCceEEEEEEEeecCCCCchhhHHHHHHH---H-hcCCCccEEEEecchhhh
Q 012562          245 PNLVSFNFLASWAPDFA-------FEDLDSLQNAFIFFDIIDRDERDNESCHILSKL---L-NELCEVKALKLSTAFLRF  313 (461)
Q Consensus       245 p~L~~L~l~~~~~~~~~-------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~---l-~~l~~l~~L~l~~~~~~~  313 (461)
                      +.|+.++++++......       +...+.+..+++..+..      .  ...+..+   + .....++.+.+..+.+..
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i------~--~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~  326 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL------G--DEGARLLCETLLEPGCQLESLWVKSCSFTA  326 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC------H--HHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc------c--ccccchhhccccccccccccccccccchhh
Confidence            45777777664332211       23456777777632211      1  1122222   2 234568888888775432


Q ss_pred             hccccccccCCcccCcccEEEEEEeCCCcchhhH-hh-hhccCCCcceEEEEeccCCCccccccCcCccc--cccceeEE
Q 012562          314 HFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSI-IS-LLNCSPNLEALTIYFEGEDCDDWKISNKSIFC--LTCHLKTV  389 (461)
Q Consensus       314 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~-~~-lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~Lk~v  389 (461)
                      ..... ...+....++|++|+++.+..+.+.... .. +.+..+.|+.|++..+.-.....  ... .++  ..++|+++
T Consensus       327 ~~~~~-l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~--~~l-~~~l~~~~~L~~L  402 (460)
T d1z7xw1         327 ACCSH-FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC--SSL-AATLLANHSLREL  402 (460)
T ss_dssp             GGHHH-HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHH-HHHHHHCCCCCEE
T ss_pred             hhhhh-cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHH--HHH-HHHHhcCCCCCEE
Confidence            11111 1111114457889988776553332222 11 22457779988888765310000  001 111  12567777


Q ss_pred             EEEeec-CChhHHHHHHHHHhcCcCcceEEEEcc
Q 012562          390 ELIHVA-GDENELELVRFLLKNGHVLKKLSFSWM  422 (461)
Q Consensus       390 ~i~~~~-g~~~e~~~~~~ll~~a~~Le~~~i~~~  422 (461)
                      .+.+=. +..+-..+++.+-.+...||.+.+...
T Consensus       403 ~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence            665211 233445667777667778998888744

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.6e-07  Score=81.08  Aligned_cols=208  Identities=13%  Similarity=0.070  Sum_probs=118.1

Q ss_pred             CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeE-EEE-ecCCe
Q 012562          171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYK-VKI-ACPNL  247 (461)
Q Consensus       171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~-~~~-~~p~L  247 (461)
                      +++++|+|+++.++.-  -...+.+++.|+.|+++++.+..+...... .+.++.+.+.....  ...+. ..+ .+++|
T Consensus        32 ~~~~~L~Ls~N~i~~i--~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~--~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHGNRISHV--PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ--LRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT--CCCCCTTTTTTCTTC
T ss_pred             CCCCEEECcCCcCCCC--CHHHhhccccccccccccccccccccccccccccccccccccccc--cccccchhhcccccC
Confidence            5789999999987642  123477899999999998753322111111 24566665543321  11111 112 56899


Q ss_pred             eeEEEecCCCCce---eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCC
Q 012562          248 VSFNFLASWAPDF---AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIP  324 (461)
Q Consensus       248 ~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~  324 (461)
                      ++|.+.++.....   .+...++|+.+++..+..  ...+       ...+..+++++.|+++++.+..+..    ..+.
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l--~~i~-------~~~f~~~~~L~~L~l~~N~l~~l~~----~~f~  174 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--QALP-------DDTFRDLGNLTHLFLHGNRISSVPE----RAFR  174 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCC-------TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccc--cccC-------hhHhccccchhhcccccCcccccch----hhhc
Confidence            9999988544322   344567788777743221  1111       1234567788899998887654332    2333


Q ss_pred             cccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEE--eecCChhH
Q 012562          325 NSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELI--HVAGDENE  400 (461)
Q Consensus       325 ~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~--~~~g~~~e  400 (461)
                       .+++|+.|.+..+.... ..+.  .+..+++|+.|++..+...       ..++.  .-..+|+++.+.  .+.+....
T Consensus       175 -~l~~L~~l~l~~N~l~~-i~~~--~f~~l~~L~~L~l~~N~i~-------~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         175 -GLHSLDRLLLHQNRVAH-VHPH--AFRDLGRLMTLYLFANNLS-------ALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             -TCTTCCEEECCSSCCCE-ECTT--TTTTCTTCCEEECCSSCCS-------CCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             -cccccchhhhhhccccc-cChh--Hhhhhhhcccccccccccc-------cccccccccccccCEEEecCCCCCCCccc
Confidence             55688888886665432 2122  4677888988888776531       11011  123567777776  34444443


Q ss_pred             HHHHHH
Q 012562          401 LELVRF  406 (461)
Q Consensus       401 ~~~~~~  406 (461)
                      ..+..+
T Consensus       244 ~~l~~~  249 (284)
T d1ozna_         244 RPLWAW  249 (284)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            344333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=2.4e-06  Score=66.28  Aligned_cols=82  Identities=24%  Similarity=0.209  Sum_probs=66.9

Q ss_pred             cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562          121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL  199 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L  199 (461)
                      ..+++|+++.+. ...+|..+..+++|+.|+++++     .+.. +.+..+++|++|++.++.+.+-..+. .+..||.|
T Consensus        20 ~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N-----~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~-~l~~~~~L   92 (124)
T d1dcea3          20 LLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN-----ALENVDGVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRL   92 (124)
T ss_dssp             TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-----CCCCCGGGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTC
T ss_pred             CCCCEEECCCCc-cCcchhhhhhhhcccccccccc-----cccccCccccccccCeEECCCCccCCCCCch-hhcCCCCC
Confidence            479999997664 4578888888999999999999     6666 56788999999999999987642333 36789999


Q ss_pred             cceEEeeeec
Q 012562          200 EKLILKSCSF  209 (461)
Q Consensus       200 e~L~L~~c~~  209 (461)
                      +.|+++++.+
T Consensus        93 ~~L~l~~N~i  102 (124)
T d1dcea3          93 VLLNLQGNSL  102 (124)
T ss_dssp             CEEECTTSGG
T ss_pred             CEEECCCCcC
Confidence            9999999764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.76  E-value=4e-07  Score=77.23  Aligned_cols=62  Identities=18%  Similarity=0.103  Sum_probs=40.1

Q ss_pred             CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccC
Q 012562          166 FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFG  231 (461)
Q Consensus       166 ~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~  231 (461)
                      ....+++|++|+|+++.+++-..    +.++++|+.|+|++|.+..+..+.-..++|+.|.+.+|.
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~----l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISS----LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCC----HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE
T ss_pred             HHhcccccceeECcccCCCCccc----ccCCccccChhhccccccccccccccccccccccccccc
Confidence            35578999999999999875322    567899999999998654332111111345555554444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=5.6e-05  Score=65.57  Aligned_cols=63  Identities=17%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             eCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEee
Q 012562          136 ELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKS  206 (461)
Q Consensus       136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~  206 (461)
                      .+|..+.  +++++|+|+++     .+..   ..+.++++|++|+|.++.+.+. .-...+.+++.+++|.+..
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n-----~i~~l~~~~f~~l~~L~~L~ls~n~~~~~-i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLT-----KLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESC-----CCCEECTTTTTTCTTCCEEEEESCTTCCE-ECSSSEESCTTCCEEEEEC
T ss_pred             CcCCCCC--CCCCEEECcCC-----cCCccChhHhhccchhhhhhhccccccce-eeccccccccccccccccc
Confidence            4555443  35666666666     3322   2345566666666665543321 0011234455566655544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.59  E-value=1.5e-06  Score=80.48  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=23.9

Q ss_pred             ccCcccEEEeeeEEEcCh--hhHHHHhhcCccccceEEeeee
Q 012562          169 GFSRLKSLDLHNVEFLDH--NLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       169 ~l~~L~~L~L~~~~~~~~--~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      .+++|++|+|.++.+++.  ..+...+..++.|+.|.+.+|.
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            356677777776666554  2233344566777777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.55  E-value=4.7e-06  Score=70.03  Aligned_cols=68  Identities=15%  Similarity=0.126  Sum_probs=48.9

Q ss_pred             eeeCCCCcccCCCccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec
Q 012562          134 VTELPHCLVTCESLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF  209 (461)
Q Consensus       134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~  209 (461)
                      ...+|..+.  +++++|+|+++     .+..    ..+..+++|++|+|.++.+...  ....+.+.+.|++|+|++|.+
T Consensus        20 L~~iP~~lp--~~l~~L~Ls~N-----~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~--~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          20 LKEIPRDIP--LHTTELLLNDN-----ELGRISSDGLFGRLPHLVKLELKRNQLTGI--EPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             CSSCCSCCC--TTCSEEECCSC-----CCCSBCCSCSGGGCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSCCC
T ss_pred             cCccCCCCC--CCCCEEEeCCC-----CCcccccccccCCCceEeeeeccccccccc--cccccccccccceeeeccccc
Confidence            345666553  58999999999     5432    3556789999999988877653  334567788999999988754


Q ss_pred             C
Q 012562          210 R  210 (461)
Q Consensus       210 ~  210 (461)
                      .
T Consensus        91 ~   91 (192)
T d1w8aa_          91 K   91 (192)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.4e-05  Score=68.08  Aligned_cols=86  Identities=10%  Similarity=0.190  Sum_probs=58.4

Q ss_pred             cCCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccCCCccccCcccEEEeeeE-EEcChhhHHHHhhcCcc
Q 012562          121 RNVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNV-EFLDHNLLHKFVSSRRL  198 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~-~~~~~~~l~~l~~~cp~  198 (461)
                      +++++|++..+. ...+|... ..+++|++|+|+++.+.. .++...+..++++++|.+..+ .+..  .....+.++|.
T Consensus        29 ~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~-~i~~~~f~~l~~l~~l~~~~~n~l~~--~~~~~~~~l~~  104 (242)
T d1xwdc1          29 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLY--INPEAFQNLPN  104 (242)
T ss_dssp             SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCC-EECSSSEESCTTCCEEEEECCTTCCE--ECTTSEECCTT
T ss_pred             CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccc-eeeccccccccccccccccccccccc--ccccccccccc
Confidence            478999997654 44677654 459999999999982111 122235667899999987653 2221  22234678999


Q ss_pred             ccceEEeeeecC
Q 012562          199 LEKLILKSCSFR  210 (461)
Q Consensus       199 Le~L~L~~c~~~  210 (461)
                      |+.|.+.++.+.
T Consensus       105 L~~l~l~~~~l~  116 (242)
T d1xwdc1         105 LQYLLISNTGIK  116 (242)
T ss_dssp             CCEEEEESCCCC
T ss_pred             ccccccchhhhc
Confidence            999999997643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=8.1e-06  Score=68.55  Aligned_cols=82  Identities=17%  Similarity=0.024  Sum_probs=61.2

Q ss_pred             cCCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      .++++|+|+.+.....++... ..+++|+.|+|+++     .+..   ..+..+++|++|+|+++.+..-  -...+.+.
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-----~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l--~~~~F~~l  101 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-----QLTGIEPNAFEGASHIQELQLGENKIKEI--SNKMFLGL  101 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSCCCCEE--CSSSSTTC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccc-----ccccccccccccccccceeeecccccccc--CHHHHhCC
Confidence            468899987765443455544 45899999999999     5443   3566799999999999977642  22347789


Q ss_pred             ccccceEEeeeec
Q 012562          197 RLLEKLILKSCSF  209 (461)
Q Consensus       197 p~Le~L~L~~c~~  209 (461)
                      +.|++|+|++|.+
T Consensus       102 ~~L~~L~L~~N~l  114 (192)
T d1w8aa_         102 HQLKTLNLYDNQI  114 (192)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             CcccccccCCccc
Confidence            9999999999753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=4.6e-05  Score=61.33  Aligned_cols=70  Identities=19%  Similarity=0.124  Sum_probs=46.7

Q ss_pred             eeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec
Q 012562          134 VTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF  209 (461)
Q Consensus       134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~  209 (461)
                      ....|..+...++|++|++.++.    .+..   ..+..+++|+.|+|.++.+..-  -...+.+.++|+.|+|++|.+
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~----~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i--~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVKSGLRFV--APDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCS----SCCEECGGGSCSCCCCSEEECCSSCCCEE--CTTGGGSCSCCCEEECCSSCC
T ss_pred             CccCcccccCccccCeeecCCCc----cccccCchhhccccccCcceeeccccCCc--ccccccccccccceeccCCCC
Confidence            34566666677888888886551    2332   3466788888888888776542  133466778888888888753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00015  Score=68.75  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=27.0

Q ss_pred             CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      ++|++|+++++.+++. .+..++..+++|+.|.|.+|.
T Consensus         2 ~~l~~ld~~~~~i~~~-~~~~l~~~l~~l~~L~L~~~~   38 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCG   38 (460)
T ss_dssp             EEEEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESSC
T ss_pred             CCCCEEEeeCCcCChH-HHHHHHHhCCCCCEEEeCCCC
Confidence            3577777777777776 677777777777777777763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.23  E-value=0.00038  Score=63.43  Aligned_cols=94  Identities=29%  Similarity=0.315  Sum_probs=59.6

Q ss_pred             HhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcC-
Q 012562          119 ARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR-  196 (461)
Q Consensus       119 ~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c-  196 (461)
                      ...++++|+++... ...+|..   .++|++|+|+++     .+.. |.  .+.+|++|++.++.++.-       ..+ 
T Consensus        36 ~~~~l~~LdLs~~~-L~~lp~~---~~~L~~L~Ls~N-----~l~~lp~--~~~~L~~L~l~~n~l~~l-------~~lp   97 (353)
T d1jl5a_          36 LDRQAHELELNNLG-LSSLPEL---PPHLESLVASCN-----SLTELPE--LPQSLKSLLVDNNNLKAL-------SDLP   97 (353)
T ss_dssp             HHHTCSEEECTTSC-CSCCCSC---CTTCSEEECCSS-----CCSSCCC--CCTTCCEEECCSSCCSCC-------CSCC
T ss_pred             HHcCCCEEEeCCCC-CCCCCCC---CCCCCEEECCCC-----CCccccc--chhhhhhhhhhhcccchh-------hhhc
Confidence            34578888875443 3456653   467889999888     5554 32  356888888887766532       222 


Q ss_pred             ccccceEEeeeecCCceEEEEecCCcCeEEEeccC
Q 012562          197 RLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFG  231 (461)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~  231 (461)
                      +.|++|++.+|.+..+... ...++|+.|.+..+.
T Consensus        98 ~~L~~L~L~~n~l~~lp~~-~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEKLPEL-QNSSFLKIIDVDNNS  131 (353)
T ss_dssp             TTCCEEECCSSCCSSCCCC-TTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccch-hhhccceeecccccc
Confidence            4688888888765443321 123678888877665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.00079  Score=53.76  Aligned_cols=81  Identities=17%  Similarity=0.081  Sum_probs=56.1

Q ss_pred             cCCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562          121 RNVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR  196 (461)
Q Consensus       121 ~~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c  196 (461)
                      .++++|++........++... ..+++|+.|+|+++     .+..   ..+..+++|++|+|+++.++.-  -..++ ..
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-----~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l--~~~~~-~~  102 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-----GLRFVAPDAFHFTPRLSRLNLSFNALESL--SWKTV-QG  102 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-----CCCEECTTGGGSCSCCCEEECCSSCCSCC--CSTTT-CS
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeecc-----ccCCcccccccccccccceeccCCCCccc--Chhhh-cc
Confidence            467888775443344566544 45899999999999     5444   3567899999999999987642  11223 33


Q ss_pred             ccccceEEeeeec
Q 012562          197 RLLEKLILKSCSF  209 (461)
Q Consensus       197 p~Le~L~L~~c~~  209 (461)
                      +.|+.|+|+++.+
T Consensus       103 ~~l~~L~L~~Np~  115 (156)
T d2ifga3         103 LSLQELVLSGNPL  115 (156)
T ss_dssp             CCCCEEECCSSCC
T ss_pred             ccccccccCCCcc
Confidence            4688999988754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.93  E-value=0.002  Score=51.99  Aligned_cols=129  Identities=11%  Similarity=0.136  Sum_probs=70.7

Q ss_pred             HHHHHHHhcCCCccEEEEecc-hhhhhccccccccCCcccCcccEEEEEEeCCCc-chhhHhhhhccCCCcceEEEEecc
Q 012562          289 HILSKLLNELCEVKALKLSTA-FLRFHFVLEERGFIPNSFNYLKSLVLSVSMADW-VVPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       289 ~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      ..+.++....+.+++|+|+++ .+..-........+. ..++|++|+++.+..+. ........|+.++.|+.|+|..+.
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~-~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHh-hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            446666667778888888753 222111111122233 44578888876665422 222222366778888888887765


Q ss_pred             CCCccccc--cCcCccccccceeEEEEEee----cCChhHHHHHHHHHhcCcCcceEEEEcc
Q 012562          367 EDCDDWKI--SNKSIFCLTCHLKTVELIHV----AGDENELELVRFLLKNGHVLKKLSFSWM  422 (461)
Q Consensus       367 ~~~~~~~~--~~~~~~~~~~~Lk~v~i~~~----~g~~~e~~~~~~ll~~a~~Le~~~i~~~  422 (461)
                      .....+..  ... .  ...+|+++.+.+-    -|......+++.+ +.-++|+++.+.+.
T Consensus        84 i~~~g~~~l~~aL-~--~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L-~~n~sL~~l~l~~~  141 (167)
T d1pgva_          84 LTPELLARLLRST-L--VTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFA  141 (167)
T ss_dssp             CCHHHHHHHHHHT-T--TTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCC
T ss_pred             cchHHHHHHHHHH-H--hCCcCCEEECCCCcCCCccHHHHHHHHHHH-HhCCCccEeeCcCC
Confidence            32111111  001 1  1256788877643    2344556677755 55589999988765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.67  E-value=0.0043  Score=56.00  Aligned_cols=93  Identities=14%  Similarity=0.021  Sum_probs=65.7

Q ss_pred             CCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcC
Q 012562          145 ESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLK  223 (461)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~  223 (461)
                      .+|++|+|+++     .+.. |.  ..++|++|+|+++.+++-   +   ...++|+.|.+.++....+..   -.+.|+
T Consensus        38 ~~l~~LdLs~~-----~L~~lp~--~~~~L~~L~Ls~N~l~~l---p---~~~~~L~~L~l~~n~l~~l~~---lp~~L~  101 (353)
T d1jl5a_          38 RQAHELELNNL-----GLSSLPE--LPPHLESLVASCNSLTEL---P---ELPQSLKSLLVDNNNLKALSD---LPPLLE  101 (353)
T ss_dssp             HTCSEEECTTS-----CCSCCCS--CCTTCSEEECCSSCCSSC---C---CCCTTCCEEECCSSCCSCCCS---CCTTCC
T ss_pred             cCCCEEEeCCC-----CCCCCCC--CCCCCCEEECCCCCCccc---c---cchhhhhhhhhhhcccchhhh---hccccc
Confidence            57999999999     6655 43  367999999999877632   2   235689999999986544332   125799


Q ss_pred             eEEEeccCCCCCCCeEEEEecCCeeeEEEecCC
Q 012562          224 SLTLDNFGGDESGNYKVKIACPNLVSFNFLASW  256 (461)
Q Consensus       224 ~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  256 (461)
                      +|.+.++.+   ..+.....+++|+.|.+.++.
T Consensus       102 ~L~L~~n~l---~~lp~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         102 YLGVSNNQL---EKLPELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             EEECCSSCC---SSCCCCTTCTTCCEEECCSSC
T ss_pred             ccccccccc---ccccchhhhccceeecccccc
Confidence            999998875   222212357889999988743

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.52  E-value=0.002  Score=51.86  Aligned_cols=74  Identities=19%  Similarity=0.162  Sum_probs=37.7

Q ss_pred             HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC--Cc-chhhHhhhhccCCCcceEEEEec
Q 012562          291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA--DW-VVPSIISLLNCSPNLEALTIYFE  365 (461)
Q Consensus       291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~-~~l~~~~lL~~~p~L~~L~l~~~  365 (461)
                      +...+...+.++.|.+..+.+..-........+. ..++|+.+++..+..  +. ........++.++.|++|.++..
T Consensus        66 L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~-~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          66 LAEMLKVNNTLKSLNVESNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhhcccchhhhhccccccchhHHHHHHHHH-hCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            4455555666666666665433211111122333 445677666654432  22 22223336677888888877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.91  E-value=0.0086  Score=47.89  Aligned_cols=131  Identities=11%  Similarity=0.151  Sum_probs=74.9

Q ss_pred             HHHHHHHhcCCCccEEEEecc-hhhhhccccccccCCcccCcccEEEEEEeCCCcc-hhhHhhhhccCCCcceEEEEecc
Q 012562          289 HILSKLLNELCEVKALKLSTA-FLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWV-VPSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       289 ~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      ..+..+....+.|++|++.+. .+..-........+. ..++|++|+++.+..+.+ ...+...++..+.++.|++..+.
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~-~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHh-cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            346666777788999988863 232111111123333 556889998877754222 22233377888999999887765


Q ss_pred             CCCccccccCcCccccccceeEEEEEee---cCChhHHHHHHHHHhcCcCcceEEEEcc
Q 012562          367 EDCDDWKISNKSIFCLTCHLKTVELIHV---AGDENELELVRFLLKNGHVLKKLSFSWM  422 (461)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~Lk~v~i~~~---~g~~~e~~~~~~ll~~a~~Le~~~i~~~  422 (461)
                      .....+..... .-...++|+.+.+...   -|......+++. ++..+.|+++.+.+.
T Consensus        86 ~~~~g~~~l~~-~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          86 ISGSGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CCHHHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCS
T ss_pred             ccchhHHHHHH-HHHhCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCC
Confidence            32111111000 0112356777777522   234444566654 477889999998865

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.00075  Score=54.28  Aligned_cols=15  Identities=13%  Similarity=0.228  Sum_probs=8.8

Q ss_pred             HHHHHhcCCCccEEE
Q 012562          291 LSKLLNELCEVKALK  305 (461)
Q Consensus       291 ~~~~l~~l~~l~~L~  305 (461)
                      ...++..+|+|+.|+
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence            445556667776553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.50  E-value=0.018  Score=46.05  Aligned_cols=76  Identities=7%  Similarity=-0.027  Sum_probs=48.2

Q ss_pred             HHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcch-hhHhhhhccCCCcceEEEEecc
Q 012562          290 ILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVV-PSIISLLNCSPNLEALTIYFEG  366 (461)
Q Consensus       290 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-l~~~~lL~~~p~L~~L~l~~~~  366 (461)
                      .+...+...+.|++|+|+++.+..-........++ ..+.|++|+++.+..+.++ ..+...|+.++.|+.|++....
T Consensus        35 ~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~-~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          35 SLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhhCCccceeeccccccchhHHHHHhhhhh-hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            35555666778999999988654322111122233 4568999999887664333 3333367888899999887653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.011  Score=46.95  Aligned_cols=58  Identities=28%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             CCCccEEEeceeccccccccC-C----CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562          144 CESLEALKLACRQLRMCVLKL-P----FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS  208 (461)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~-~----~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~  208 (461)
                      +++|++|+|++|     .+.. +    ....+++|+.|+|+++.+.+-..+.. + +.+.|++|++.+|.
T Consensus        64 ~~~L~~L~Ls~N-----~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSNN-----RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCSS-----CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTST
T ss_pred             CCCCCEeeCCCc-----cccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCC
Confidence            556666777766     4333 1    12346666666666666665433332 2 23346666666654