Citrus Sinensis ID: 012596
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 460 | 2.2.26 [Sep-21-2011] | |||||||
| Q949Q0 | 420 | Glycerol-3-phosphate dehy | yes | no | 0.830 | 0.909 | 0.846 | 0.0 | |
| Q8H2J9 | 440 | Glycerol-3-phosphate dehy | yes | no | 0.795 | 0.831 | 0.806 | 1e-168 | |
| C4XLT6 | 330 | Glycerol-3-phosphate dehy | yes | no | 0.702 | 0.978 | 0.430 | 4e-67 | |
| A1V9Y4 | 330 | Glycerol-3-phosphate dehy | yes | no | 0.715 | 0.996 | 0.398 | 2e-65 | |
| P61739 | 330 | Glycerol-3-phosphate dehy | yes | no | 0.715 | 0.996 | 0.398 | 2e-65 | |
| Q04Y15 | 335 | Glycerol-3-phosphate dehy | yes | no | 0.7 | 0.961 | 0.393 | 4e-65 | |
| Q04VF9 | 335 | Glycerol-3-phosphate dehy | yes | no | 0.7 | 0.961 | 0.393 | 4e-65 | |
| P61742 | 335 | Glycerol-3-phosphate dehy | yes | no | 0.7 | 0.961 | 0.4 | 4e-65 | |
| Q8EZB6 | 335 | Glycerol-3-phosphate dehy | yes | no | 0.7 | 0.961 | 0.403 | 4e-65 | |
| B0SKD9 | 333 | Glycerol-3-phosphate dehy | yes | no | 0.702 | 0.969 | 0.414 | 1e-64 |
| >sp|Q949Q0|GPDA2_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic OS=Arabidopsis thaliana GN=GLY1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/384 (84%), Positives = 353/384 (91%), Gaps = 2/384 (0%)
Query: 77 PDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGG 136
P+ + +S I T RD+RK+V++AWEKLVRWSR+ R+KAKTD+LERT KVVVLGGG
Sbjct: 39 PEADSISGPPDIINTN--RDQRKVVRIAWEKLVRWSRSLRAKAKTDVLERTRKVVVLGGG 96
Query: 137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196
SFGTAMAAHVA +K L+V ML+RD VCQSINE H NC+YFPE KLPENVIATTDAK A
Sbjct: 97 SFGTAMAAHVARRKEGLEVNMLVRDSFVCQSINENHHNCKYFPEHKLPENVIATTDAKAA 156
Query: 197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR 256
LL ADYCLHA+PVQFSSSFLEGI+DYVDPGLPFISLSKGLELNTLRMMSQIIP AL+NPR
Sbjct: 157 LLDADYCLHAVPVQFSSSFLEGIADYVDPGLPFISLSKGLELNTLRMMSQIIPIALKNPR 216
Query: 257 QPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAG 316
QPF+ALSGPSFALELMN LPTAMVVASKD+KLANAVQQLLAS +LRI+TSSDVTGVEIAG
Sbjct: 217 QPFVALSGPSFALELMNNLPTAMVVASKDKKLANAVQQLLASSYLRINTSSDVTGVEIAG 276
Query: 317 ALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLT 376
ALKNVLAIAAGIV GMNLGNNSMAALV+QGCSEIRWLATKMGAKP TITGLSGTGDIMLT
Sbjct: 277 ALKNVLAIAAGIVDGMNLGNNSMAALVSQGCSEIRWLATKMGAKPTTITGLSGTGDIMLT 336
Query: 377 CFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR 436
CFVNLSRNRTVGVRLGSGE LDDIL+SMNQVAEGV+TAGAVIALAQKYNVK+PVLTAVA+
Sbjct: 337 CFVNLSRNRTVGVRLGSGETLDDILTSMNQVAEGVATAGAVIALAQKYNVKLPVLTAVAK 396
Query: 437 IIDNELTPKKAVLELMSLPQVEEV 460
IIDNELTP KAVLELM+LPQ+EEV
Sbjct: 397 IIDNELTPTKAVLELMNLPQIEEV 420
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Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids. Required for activation of systemic acquired resistance (SAR). Provision of glycerol-3-phosphate may be involved in generating lipid signals necessary for mediating defense responses and SAR. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8 |
| >sp|Q8H2J9|GPDA_ORYSJ Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0229800 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 591 bits (1523), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/366 (80%), Positives = 332/366 (90%)
Query: 95 RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLK 154
++RR++V+ AWEKLVRWSR+WR + ++D++E T KVVVLGGGSFGTAMAA VA KK+ L+
Sbjct: 75 KERRRVVRKAWEKLVRWSRSWRRRNRSDVVETTRKVVVLGGGSFGTAMAAQVAAKKADLE 134
Query: 155 VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS 214
V ML+RD VC+SIN H NC+Y + +LPEN+ ATT A AL GAD+C HA+PVQFSSS
Sbjct: 135 VSMLLRDDLVCRSINHSHINCKYLRDHRLPENITATTSASDALAGADFCFHAVPVQFSSS 194
Query: 215 FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274
FLEGIS +VDP LPFISLSKGLELNTLR MSQIIPQAL NPRQPFI LSGPSFA+ELMNK
Sbjct: 195 FLEGISTHVDPKLPFISLSKGLELNTLRTMSQIIPQALGNPRQPFIVLSGPSFAIELMNK 254
Query: 275 LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL 334
LPTAMVVASKD+KLA AVQQLLAS +LRISTS+DVTGVEIAGALKNVLAIAAGIV GM+L
Sbjct: 255 LPTAMVVASKDKKLAAAVQQLLASPNLRISTSNDVTGVEIAGALKNVLAIAAGIVEGMHL 314
Query: 335 GNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG 394
GNN MAALVAQGCSEIRWLATKMGAKP T++GLSG+GDIMLTCFVNLSRNR VG+RLGSG
Sbjct: 315 GNNCMAALVAQGCSEIRWLATKMGAKPTTLSGLSGSGDIMLTCFVNLSRNRNVGLRLGSG 374
Query: 395 EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSL 454
EKLD+I++SMNQVAEGVSTAGAVIALAQKY+VKMPVLTAVARIIDNELTPKKAV+ELM+L
Sbjct: 375 EKLDEIMNSMNQVAEGVSTAGAVIALAQKYHVKMPVLTAVARIIDNELTPKKAVMELMNL 434
Query: 455 PQVEEV 460
PQVEEV
Sbjct: 435 PQVEEV 440
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Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|C4XLT6|GPDA_DESMR Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 197/325 (60%), Gaps = 2/325 (0%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ V+GGGS+GT +A A K L + +R+ AV I N Y P +KL + +
Sbjct: 2 KIAVIGGGSWGTTLADLAAKKG--LDARLWVREQAVMNEIRSSRENSWYLPGRKLSDQLE 59
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
+TD G + + A+P QF + + Y+ I SKG+EL+TL MSQ+
Sbjct: 60 VSTDPAAVAEGVSHFVFAVPCQFIRAAYQRFIKYLPKNAVVICASKGIELDTLMTMSQVC 119
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
AL + + F LSGPSFA E++ ++PTA+ +A KD+K A VQ+ L++ + RI T++D
Sbjct: 120 QDALASIKPRFAMLSGPSFAYEVIREMPTAVTLACKDKKAAKDVQEALSTPYFRIYTTTD 179
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V GVE+ GA+KN++AIAAG+ G+ G ++ AAL+ +G E+ L MG T GLS
Sbjct: 180 VRGVELGGAIKNIVAIAAGVADGLGFGGDARAALITRGLHEMSRLGKAMGGDRQTFMGLS 239
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD++LTC +LSRNR VG+RL G+KL DIL+ M VAEGV TA AV AL QK V+M
Sbjct: 240 GMGDLVLTCTGDLSRNRQVGLRLAKGQKLLDILADMKMVAEGVKTAEAVHALGQKLGVEM 299
Query: 429 PVLTAVARIIDNELTPKKAVLELMS 453
P+ V I+ + P KAV ELM+
Sbjct: 300 PITEQVYAILYKDKDPSKAVYELMT 324
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Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) (taxid: 573370) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|A1V9Y4|GPDA_DESVV Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 204/331 (61%), Gaps = 2/331 (0%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ VLGGGS+GTA+A +A K +++++ RDPAV + +N H N RY L E +
Sbjct: 2 KIAVLGGGSWGTALAHLLAGKGEDVRLWV--RDPAVVEGVNRDHENPRYLKGLHLHEALR 59
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
AT DA AL GAD L +P Q + S L + + G+ +S SKG+E + LR + +++
Sbjct: 60 ATCDAGEALEGADILLSVVPCQQTRSVLRSLRPRLKSGMVVVSASKGIETDGLRTVGEMV 119
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
+ L + +SGPSFA E++ +PTA+V+ DR L ++++ ++ R + +D
Sbjct: 120 EEELAGLAPRYAVISGPSFAAEVVAGMPTAVVLGCADRDLGGTLREVFSTPTFRTYSCTD 179
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V GVE+ GA+KNV+AIAAG+ G+ G+N+ A L+ +G +E+ L +GA+ +T GLS
Sbjct: 180 VRGVELGGAVKNVIAIAAGLSDGLGFGSNARAGLITRGLAEMGRLGVALGARASTFMGLS 239
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD++LTC +LSRNR VG+RL +G+ LD I++ M VAEGV T AV ALA++ +
Sbjct: 240 GLGDLVLTCTGDLSRNRQVGLRLAAGQGLDAIVAGMGMVAEGVKTTEAVHALARREGADL 299
Query: 429 PVLTAVARIIDNELTPKKAVLELMSLPQVEE 459
P+ A+ ++ + P+ V ELM+ EE
Sbjct: 300 PITRAMYAVLHDGRDPRDMVQELMTRELREE 330
|
Desulfovibrio vulgaris subsp. vulgaris (strain DP4) (taxid: 391774) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|P61739|GPDA_DESVH Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 202/331 (61%), Gaps = 2/331 (0%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ VLGGGS+GTA+A +A K +++++ RDPAV + +N H N RY L E +
Sbjct: 2 KIAVLGGGSWGTALAHLLAGKGEDVRLWV--RDPAVVEGVNRDHENPRYLKGLHLHEALR 59
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
AT DA AL GAD L +P Q + + L + + G+ +S SKG+E + LR + +++
Sbjct: 60 ATCDAGEALEGADILLSVVPCQQTRTVLRSLRPRLKTGMVVVSASKGIETDGLRTVGEMV 119
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
L + +SGPSFA E++ +PTA+V+ DR L ++++ ++ R + +D
Sbjct: 120 EDELAGLAPRYAVISGPSFAAEVVAGMPTAVVLGCADRDLGGTLREVFSTPTFRTYSCTD 179
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V GVE+ GA+KNV+AIAAG+ G+ G+N+ A L+ +G +E+ L +GA+ +T GLS
Sbjct: 180 VRGVELGGAVKNVIAIAAGLSDGLGFGSNARAGLITRGLAEMGRLGVALGARGSTFMGLS 239
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD++LTC +LSRNR VG+RL G+ LD I++ M VAEGV T AV LAQ+ V +
Sbjct: 240 GLGDLVLTCTGDLSRNRQVGLRLAEGQGLDAIVAGMGMVAEGVKTTEAVYELAQREGVDL 299
Query: 429 PVLTAVARIIDNELTPKKAVLELMSLPQVEE 459
P+ A+ ++ + P+ V ELM+ EE
Sbjct: 300 PITQAMYAVLHDGRDPRDMVQELMTRELREE 330
|
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) (taxid: 882) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q04Y15|GPDA_LEPBL Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 201/325 (61%), Gaps = 3/325 (0%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ V+G GSFGTA+ + +A+K ++ ++ R+ + +SIN H N ++ P+ LPE +
Sbjct: 2 KIGVIGSGSFGTALGSLLADKGYEVTLWC--RNDSQIESINRNHINNKHLPDFTLPEKLT 59
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
A+ D +T + G D + + P + L I +Y+ +P +S SKG+E TLR++S+I
Sbjct: 60 ASKDLRTVVQGKDMIVSSPPSHALTEILREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119
Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
L +++ LSGPSFA E++ K+PT + +AS+ A VQ++ + + R +
Sbjct: 120 ESELPGKYHSYLSYLSGPSFAKEIIQKVPTIVSIASRSETTARKVQEIFSFLYFRTYWTP 179
Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
DV GVE+ G+LKNV+A+AAG+ G+ G N+ AAL+ +G +EI + K+GA P T G
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239
Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
SG GD++LTC SRNRTVG RLG GE L+ ILS MN+VAEG+ T + L+QK ++
Sbjct: 240 SGMGDLILTCCGGQSRNRTVGFRLGKGETLEQILSGMNEVAEGIKTTQSAYELSQKLGIE 299
Query: 428 MPVLTAVARIIDNELTPKKAVLELM 452
M + V +++ + PK+ V +LM
Sbjct: 300 MAITNEVYKMLYEDKNPKEVVKDLM 324
|
Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q04VF9|GPDA_LEPBJ Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 201/325 (61%), Gaps = 3/325 (0%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ V+G GSFGTA+ + +A+K ++ ++ R+ + +SIN H N ++ P+ LPE +
Sbjct: 2 KIGVIGSGSFGTALGSLLADKGYEVTLWC--RNDSQIESINRNHINNKHLPDFTLPEKLT 59
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
A+ D +T + G D + + P + L I +Y+ +P +S SKG+E TLR++S+I
Sbjct: 60 ASKDLRTVVQGKDMIVSSPPSHALTEILREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119
Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
L +++ LSGPSFA E++ K+PT + +AS+ A VQ++ + + R +
Sbjct: 120 ESELPGKYHSYLSYLSGPSFAKEIIQKVPTIVSIASRSETTARKVQEIFSFLYFRTYWTP 179
Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
DV GVE+ G+LKNV+A+AAG+ G+ G N+ AAL+ +G +EI + K+GA P T G
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239
Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
SG GD++LTC SRNRTVG RLG GE L+ ILS MN+VAEG+ T + L+QK ++
Sbjct: 240 SGMGDLILTCCGEQSRNRTVGFRLGKGETLEQILSGMNEVAEGIKTTQSAYELSQKLGIE 299
Query: 428 MPVLTAVARIIDNELTPKKAVLELM 452
M + V +++ + PK+ V +LM
Sbjct: 300 MAITNEVYKMLYEDKNPKEVVKDLM 324
|
Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|P61742|GPDA_LEPIC Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 200/325 (61%), Gaps = 3/325 (0%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ V+G GSFGTA+ + +A+K ++ ++ R+ + +SIN H N ++ P LPE +
Sbjct: 2 KIGVIGSGSFGTALGSLLADKGYEVTLWC--RNDSQVESINRNHINNKHLPNFTLPEKLT 59
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
A+ D + + G D + + P S L I +Y+ +P +S SKG+E TLR++S+I
Sbjct: 60 ASKDLRNVVQGKDMIVSSPPSHALSEVLREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119
Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
L +++ LSGPSFA E++ K+PT + +ASK+ A VQ++ + + R +
Sbjct: 120 ESELPEKYHSYLSYLSGPSFAKEIIQKVPTIVSIASKNETTARKVQEIFSFLYFRTYWTP 179
Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
DV GVE+ G+LKNV+A+AAG+ G+ G N+ AAL+ +G +EI + K+GA P T G
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239
Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
SG GD++LTC SRNRTVG RLG GE L+ ILSSMN+VAEGV T + L+QK ++
Sbjct: 240 SGMGDLILTCCGEQSRNRTVGFRLGKGETLEQILSSMNEVAEGVKTTQSAYELSQKLGIE 299
Query: 428 MPVLTAVARIIDNELTPKKAVLELM 452
M + V +++ P++ V +LM
Sbjct: 300 MAITNEVYKMLYEGKNPREVVKDLM 324
|
Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (taxid: 267671) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q8EZB6|GPDA_LEPIN Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 199/325 (61%), Gaps = 3/325 (0%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ V+G GSFGTA+ + +A+K + V + R+ + +SIN H N ++ P LPE +
Sbjct: 2 KIGVIGSGSFGTALGSLLADKGYE--VILWCRNDSQVESINRNHINNKHLPNFTLPEKLT 59
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
A+ D + + G D + + P S L I +Y+ +P +S SKG+E TLR++S+I
Sbjct: 60 ASKDLRNVVQGKDMIVSSPPSHALSEVLREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119
Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
L +++ LSGPSFA E++ K+PT + +ASK+ A VQ++ + + R +
Sbjct: 120 ESELPEKYHSYLSYLSGPSFAKEIIQKVPTIVSIASKNETTARKVQEIFSFLYFRTYWTP 179
Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
DV GVE+ G+LKNV+A+AAG+ G+ G N+ AAL+ +G +EI + K+GA P T G
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239
Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
SG GD++LTC SRNRTVG RLG GE L+ ILSSMN+VAEGV T + L+QK ++
Sbjct: 240 SGMGDLILTCCGEQSRNRTVGFRLGKGETLEQILSSMNEVAEGVKTTQSAYELSQKLGIE 299
Query: 428 MPVLTAVARIIDNELTPKKAVLELM 452
M + V +++ P++ V +LM
Sbjct: 300 MAITNEVYKMLYEGKNPREVVKDLM 324
|
Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|B0SKD9|GPDA_LEPBP Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 198/326 (60%), Gaps = 3/326 (0%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ ++G GSFGTA+ + +A+K + ++ R +SINE H N ++ P+ LP+ +
Sbjct: 2 KIGIIGAGSFGTALGSILADKGYDVTLWT--RSEEQARSINENHMNSKHMPDLVLPDRLK 59
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
A+TD + D + A P S L+ I D++ P +P +S SKG+E +LR++S+I
Sbjct: 60 ASTDLIQVVKDKDMIVSAPPSHALSGILKEIKDHIPPKVPIVSASKGIENESLRLVSEIF 119
Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
L ++ LSGPSFA E++ ++PT + +ASK+ A VQ++ + + R +
Sbjct: 120 ESELPGQFHSQLSYLSGPSFAKEMVKRVPTIVSIASKNEATAKRVQEIFSFTYFRTYWTP 179
Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
DV GVE+ GALKNV+AIAAG+ G+ G N+ AAL+ +G +EI + KMGA P T G
Sbjct: 180 DVVGVEVGGALKNVIAIAAGVADGLGFGQNTRAALITRGLNEITRMGIKMGADPMTFLGP 239
Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
SG GD++LTC SRNRTVG RLG GE L +ILSSMN+VAEGV T + LA K V+
Sbjct: 240 SGMGDLVLTCCGEASRNRTVGFRLGKGESLKEILSSMNEVAEGVKTTLSTKNLADKLGVE 299
Query: 428 MPVLTAVARIIDNELTPKKAVLELMS 453
M + V ++ + PK+ V LMS
Sbjct: 300 MAITQEVYHMLYEDKDPKEVVRALMS 325
|
Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) (taxid: 456481) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 460 | ||||||
| TAIR|locus:2064849 | 420 | GLY1 [Arabidopsis thaliana (ta | 0.795 | 0.871 | 0.877 | 4.7e-167 | |
| TIGR_CMR|GSU_0006 | 335 | GSU_0006 "glycerol-3-phosphate | 0.706 | 0.970 | 0.396 | 1.7e-57 | |
| TIGR_CMR|CHY_1917 | 336 | CHY_1917 "glycerol-3-phosphate | 0.717 | 0.982 | 0.379 | 8.6e-56 | |
| UNIPROTKB|P95113 | 334 | gpsA "Glycerol-3-phosphate deh | 0.693 | 0.955 | 0.395 | 5.6e-52 | |
| TIGR_CMR|BA_1526 | 340 | BA_1526 "glycerol-3-phosphate | 0.717 | 0.970 | 0.363 | 3.1e-51 | |
| TIGR_CMR|DET_1397 | 359 | DET_1397 "glycerol-3-phosphate | 0.717 | 0.919 | 0.348 | 1.3e-50 | |
| UNIPROTKB|Q97NF1 | 338 | gpsA "Glycerol-3-phosphate deh | 0.7 | 0.952 | 0.36 | 3.2e-49 | |
| TIGR_CMR|ECH_0340 | 326 | ECH_0340 "glycerol-3-phosphate | 0.695 | 0.981 | 0.337 | 8.5e-49 | |
| UNIPROTKB|P0A6S7 | 339 | gpsA [Escherichia coli K-12 (t | 0.721 | 0.979 | 0.330 | 6.9e-47 | |
| TIGR_CMR|CBU_1518 | 332 | CBU_1518 "glycerol-3-phosphate | 0.704 | 0.975 | 0.336 | 7.1e-45 |
| TAIR|locus:2064849 GLY1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1625 (577.1 bits), Expect = 4.7e-167, P = 4.7e-167
Identities = 321/366 (87%), Positives = 346/366 (94%)
Query: 95 RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLK 154
RD+RK+V++AWEKLVRWSR+ R+KAKTD+LERT KVVVLGGGSFGTAMAAHVA +K L+
Sbjct: 55 RDQRKVVRIAWEKLVRWSRSLRAKAKTDVLERTRKVVVLGGGSFGTAMAAHVARRKEGLE 114
Query: 155 VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS 214
V ML+RD VCQSINE H NC+YFPE KLPENVIATTDAK ALL ADYCLHA+PVQFSSS
Sbjct: 115 VNMLVRDSFVCQSINENHHNCKYFPEHKLPENVIATTDAKAALLDADYCLHAVPVQFSSS 174
Query: 215 FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274
FLEGI+DYVDPGLPFISLSKGLELNTLRMMSQIIP AL+NPRQPF+ALSGPSFALELMN
Sbjct: 175 FLEGIADYVDPGLPFISLSKGLELNTLRMMSQIIPIALKNPRQPFVALSGPSFALELMNN 234
Query: 275 LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL 334
LPTAMVVASKD+KLANAVQQLLAS +LRI+TSSDVTGVEIAGALKNVLAIAAGIV GMNL
Sbjct: 235 LPTAMVVASKDKKLANAVQQLLASSYLRINTSSDVTGVEIAGALKNVLAIAAGIVDGMNL 294
Query: 335 GNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG 394
GNNSMAALV+QGCSEIRWLATKMGAKP TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG
Sbjct: 295 GNNSMAALVSQGCSEIRWLATKMGAKPTTITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG 354
Query: 395 EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSL 454
E LDDIL+SMNQVAEGV+TAGAVIALAQKYNVK+PVLTAVA+IIDNELTP KAVLELM+L
Sbjct: 355 ETLDDILTSMNQVAEGVATAGAVIALAQKYNVKLPVLTAVAKIIDNELTPTKAVLELMNL 414
Query: 455 PQVEEV 460
PQ+EEV
Sbjct: 415 PQIEEV 420
|
|
| TIGR_CMR|GSU_0006 GSU_0006 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 130/328 (39%), Positives = 198/328 (60%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPEN 186
+ ++ V+G GS+GT +A +A K L V + + + + + N + P +L
Sbjct: 2 SERIGVIGAGSWGTTLANLLARKG--LDVTLWAYEAELVEEMRATRVNSLFLPGIELAPA 59
Query: 187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ 246
+ T + A G D+ + P Q L ++ + PG+ ++ SKG+EL+TL M Q
Sbjct: 60 LSFTNSLEEAATGKDFLVLVSPSQVMRGVLAQLAPLLRPGVVLVNASKGIELDTLMTMDQ 119
Query: 247 IIPQALR-NPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST 305
+ L + F LSGPSFA E+ ++PTA+V AS D +A AVQ+L + R+ T
Sbjct: 120 VCAAVLPPEVARCFSVLSGPSFAREVSLEMPTAVVAASGDPAVAAAVQRLFTTPSFRVYT 179
Query: 306 SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT 365
++DV GVEI GALKNV+A+AAGI G+ LG+N+ AAL+ +G +E+ L MGA+P T
Sbjct: 180 NTDVVGVEIGGALKNVIAVAAGISDGLGLGHNTRAALITRGLAEMTRLGLSMGAQPETFA 239
Query: 366 GLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYN 425
GL+G GD++LTC +LSRNRTVG++LG G KL D+L M VAEGV TA + LA++
Sbjct: 240 GLAGMGDLVLTCTGDLSRNRTVGMKLGQGMKLADVLGEMRMVAEGVKTAESAYRLARRTG 299
Query: 426 VKMPVLTAVARIIDNELTPKKAVLELMS 453
V+MP+ V +++ + ++AV+ELM+
Sbjct: 300 VEMPITEKVYQVLHEDKPARQAVMELMT 327
|
|
| TIGR_CMR|CHY_1917 CHY_1917 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 126/332 (37%), Positives = 196/332 (59%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
KV VLG GS+GTA++ +A K + + RD AV + IN + N RY P K+ + +I
Sbjct: 5 KVTVLGAGSWGTALSNLLAQKG--VNTVLWGRDSAVIEEINRERENKRYLPGVKISQELI 62
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
AT D + AL A++ + A+P Q L+ I Y P ++ +KG+E +L MS +
Sbjct: 63 ATADLEFALKDANFLVAAVPSQAFRDLLQKIKPYFKPEQILVNTAKGIEEGSLLRMSAVF 122
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
+ L R + LSGPS A E+ +PTA+VV+ + VQ+L ++++ R+ T+ D
Sbjct: 123 TEVLPEYRDNYTILSGPSHAEEVGRGIPTAIVVSGYSPEKLYKVQELFSTEYFRVYTNDD 182
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
+TGVE+ G+LKN++AIA+GI G+ LG+N+ AALV +G EI L K+GAK T GLS
Sbjct: 183 LTGVELGGSLKNIIAIASGICTGLGLGDNTRAALVTRGLIEITRLGIKLGAKKETFMGLS 242
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD+ +T SRN G+ +G G+ L++ +N V EG+ T A LAQ+ V+M
Sbjct: 243 GLGDLFVTAGSRHSRNYKAGILIGEGKSLEETQKEINMVVEGIRTTRAAYQLAQRLEVEM 302
Query: 429 PVLTAVARIIDNELTPKKAVLELMSLPQVEEV 460
P+ A+ +++ L P++ + LM+ + EE+
Sbjct: 303 PITEALYKVLFAGLPPREGLFGLMTRAKKEEL 334
|
|
| UNIPROTKB|P95113 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 128/324 (39%), Positives = 190/324 (58%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
V V+G G++GTA+A +A+ ++ ++ R V IN N Y P LP ++ A
Sbjct: 8 VAVMGAGAWGTALAKVLADAGGEVTLWA--RRAEVADQINTTRYNPDYLPGALLPPSIHA 65
Query: 190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249
T DA+ AL GA L +P Q + LE + + G +SL+KG+EL TL MSQ+I
Sbjct: 66 TADAEEALGGASTVLLGVPAQTMRANLERWAPLLPEGATLVSLAKGIELGTLMRMSQVII 125
Query: 250 QALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
++ P +A +SGP+ A E+ P A VVA D A A+Q+ L S + R T++D
Sbjct: 126 -SVTGAEPPQVAVISGPNLASEIAECQPAATVVACSDSGRAVALQRALNSGYFRPYTNAD 184
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V G EI GA KN++A+A G+ VG+ LG N+ AA++ +G +EI L T +GA AT+ GL+
Sbjct: 185 VVGTEIGGACKNIIALACGMAVGIGLGENTAAAIITRGLAEIIRLGTALGANGATLAGLA 244
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD++ TC SRNR+ G RLG GE L + + V EGV++ +V+ALA Y+V+M
Sbjct: 245 GVGDLVATCTSPRSRNRSFGERLGRGETLQSAGKACH-VVEGVTSCESVLALASSYDVEM 303
Query: 429 PVLTAVARIIDNELTPKKAVLELM 452
P+ AV R+ L+ +A+ L+
Sbjct: 304 PLTDAVHRVCHKGLSVDEAITLLL 327
|
|
| TIGR_CMR|BA_1526 BA_1526 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 121/333 (36%), Positives = 187/333 (56%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ V+G GS+GTA+A +A+ ++++ + + IN KH N RY P LP ++
Sbjct: 3 KITVVGAGSWGTALAMVLADNGHDVRIWGNRSE--LMDEINTKHENSRYLPGITLPSTIV 60
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
A + + AL+ + L +P + L+ + YV +I SKG+E T + +S++I
Sbjct: 61 AYSSLEEALVDVNVVLIVVPTKAYREVLQDMKKYVAGPTTWIHASKGIEPGTSKRISEVI 120
Query: 249 PQALRNPR-QPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
+ + + + LSGPS A E+ + T + A+K + A VQ L + + R+ T+
Sbjct: 121 EEEIPEDLIKDVVVLSGPSHAEEVGLRQATTVTSAAKRMEAAEEVQDLFMNSYFRVYTNP 180
Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
D+ GVE+ GALKN++A+AAGI G+ LG+N+ AAL+ +G +EI L KMG P T GL
Sbjct: 181 DIVGVELGGALKNIIALAAGITDGLGLGDNAKAALMTRGLTEIARLGRKMGGNPLTFAGL 240
Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
+G GD+++TC SRN G LG G L+++L SM V EGV T A LA+K V+
Sbjct: 241 TGMGDLIVTCTSVHSRNWRAGNMLGKGHSLEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
Query: 428 MPVLTAVARIIDNELTPKKAVLELMSLPQVEEV 460
MP+ A+ ++ N K AV LM + EV
Sbjct: 301 MPITAALYDVLFNGNNVKDAVGSLMGRVRKHEV 333
|
|
| TIGR_CMR|DET_1397 DET_1397 "glycerol-3-phosphate dehydrogenase, NAD-dependent" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 117/336 (34%), Positives = 188/336 (55%)
Query: 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPEN 186
+KV ++G ++G + +A+K ++ ++ D A S + + + PE PE
Sbjct: 2 SKVCIIGTTTWGITLGTVIAHKGREVMLWARTEDEAALLSAQRRPAD--FLPEDYYFPEY 59
Query: 187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ 246
+ T + AL GAD L A+P Q + + + + S SKGLE+ T + MSQ
Sbjct: 60 LNVTASLEEALSGADMVLMAVPSQRMRPNIRLAAPLLTKNMLVCSASKGLEIGTAKRMSQ 119
Query: 247 IIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304
+I + +P Q LSGP+ A+E++ LP V+A+ K A +L+ + +
Sbjct: 120 VIADEI-SPDFSQNICVLSGPNLAMEILKGLPAVTVLAADTEKTAKKAAKLVTASNFCAY 178
Query: 305 TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364
T++D+ GVE+ G+LKN++A+ AGI G++ GNN+ +AL+ +G +EI L +GA P T
Sbjct: 179 TNTDIIGVELGGSLKNIIALGAGIADGLSFGNNAKSALITRGLTEISALGAALGANPLTF 238
Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKY 424
+GL+G GD++ TC NLSRN VGV L G L+DI+ SM+ VAEGVST LA+
Sbjct: 239 SGLAGLGDLIATCSSNLSRNHFVGVELTKGRSLNDIMYSMSNVAEGVSTTAVAYELARSM 298
Query: 425 NVKMPVLTAVARIIDNELTPKKAVLELMSLPQVEEV 460
+++MPV + ++ N PK+A +LM+ E+
Sbjct: 299 DLEMPVTENIYNVLYNNADPKEAARKLMAAQAAHEL 334
|
|
| UNIPROTKB|Q97NF1 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Streptococcus pneumoniae TIGR4 (taxid:170187)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 117/325 (36%), Positives = 189/325 (58%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
V VLG GS+GTA++ + + +++++ + P IN H N YF + L EN+IA
Sbjct: 6 VAVLGPGSWGTALSQVLNDNGHEVRIWGNL--PEQINEINTHHTNKHYFKDVVLDENIIA 63
Query: 190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249
TD L D L +P + + + ++ +D + + SKGLE ++ + +S I+
Sbjct: 64 YTDLAETLKDVDAILFVVPTKVTRLVAQQVAQTLDHKVIIMHASKGLEPDSHKRLSTILE 123
Query: 250 QAL-RNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
+ + + R + +SGPS A E + + T + ASKD + A VQ+L ++ + R+ T++D
Sbjct: 124 EEIPEHLRSDIVVVSGPSHAEETIVRDLTLITAASKDLQTAQYVQKLFSNHYFRLYTNTD 183
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V GVE AGALKN++A+ AG + G+ G+N+ AA++A+G +EI L +GA P T +GLS
Sbjct: 184 VIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGASPLTYSGLS 243
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD+++T SRN G LG GE L DI ++M V EG+ST A LAQ+ V M
Sbjct: 244 GVGDLIVTGTSIHSRNWRAGDALGRGESLADIEANMGMVIEGISTTRAAYELAQELGVYM 303
Query: 429 PVLTAVARIIDNELTPKKAVLELMS 453
P+ A+ ++I + K A+ ++M+
Sbjct: 304 PITQAIYQVIYHGTNIKDAIYDIMN 328
|
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| TIGR_CMR|ECH_0340 ECH_0340 "glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 111/329 (33%), Positives = 192/329 (58%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K +LG GSFGTA+A +++ + + ++ R+ QSI N +Y P KLPEN+I
Sbjct: 2 KTTILGAGSFGTAIAFALSSNSTSVNLWG--RNHTDMQSIAINRKNLKYLPTCKLPENII 59
Query: 189 ATTDAKTALLGADYCLH-AMPVQFSSSFLEGISD--YVDPGLPFISLSKGLELNTLRMMS 245
+++ L C+ A+P Q + I D ++ P + SKG+E +L+ S
Sbjct: 60 VSSNIDEVLSDYSTCIILAVPTQQLRTLCLSIQDKQHIFEKTPLLICSKGIENISLKFPS 119
Query: 246 QIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST 305
+I+ + L P P LSGPSFA E+ LP +V+A ++ L ++ Q +++K +I
Sbjct: 120 EIVKEIL--PNNPAFILSGPSFAKEIAEDLPCTIVLAGENESLGTSIAQKISNKTFKIIY 177
Query: 306 SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL--ATKMGAKPAT 363
S D+ GV+I ALKN++AIA GIV G NLGNN++A ++ +G EI+ L A +T
Sbjct: 178 SQDILGVQIGAALKNIIAIACGIVTGKNLGNNAIATVITKGMEEIKTLYAAKNQNINLST 237
Query: 364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423
+ G S GD++LTC SRN + G+ +G G ++ +L++ +++ EGVST +I+LA++
Sbjct: 238 LIGPSCLGDLILTCTTAHSRNMSFGITIGQGADINKMLNNNSKIIEGVSTVKPLISLAKE 297
Query: 424 YNVKMPVLTAVARIIDNELTPKKAVLELM 452
N+++P+ T++ ++ + +K + +++
Sbjct: 298 LNIELPICTSIYNLLYKNIPLEKTISDIL 326
|
|
| UNIPROTKB|P0A6S7 gpsA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 111/336 (33%), Positives = 179/336 (53%)
Query: 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP 184
+R + V+G GS+GTA+A +A + V + DP ++ CN + P+ P
Sbjct: 3 QRNASMTVIGAGSYGTALAITLARNGHE--VVLWGHDPEHIATLERDRCNAAFLPDVPFP 60
Query: 185 ENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM 244
+ + +D TAL + L +P L I + P + +KGLE T R++
Sbjct: 61 DTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPDARLVWATKGLEAETGRLL 120
Query: 245 SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLL-ASKHLRI 303
+ +AL + + P +SGP+FA EL LPTA+ +AS D+ A+ +QQLL K R+
Sbjct: 121 QDVAREALGD-QIPLAVISGPTFAKELAAGLPTAISLASTDQTFADDLQQLLHCGKSFRV 179
Query: 304 STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363
++ D GV++ GA+KNV+AI AG+ G+ G N+ AL+ +G +E+ L +GA PAT
Sbjct: 180 YSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLAEMSRLGAALGADPAT 239
Query: 364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423
G++G GD++LTC N SRNR G+ LG G + + QV EG V LA +
Sbjct: 240 FMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSAQEKIGQVVEGYRNTKEVRELAHR 299
Query: 424 YNVKMPVLTAVARIIDNELTPKKAVLELMSLPQVEE 459
+ V+MP+ + +++ ++A L L+ + +E
Sbjct: 300 FGVEMPITEEIYQVLYCGKNAREAALTLLGRARKDE 335
|
|
| TIGR_CMR|CBU_1518 CBU_1518 "glycerol-3-phosphate dehydrogenase (NAD+)" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 111/330 (33%), Positives = 181/330 (54%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
+ +LG GS+GTA+A +A K +++++ D + + N RY P PE + A
Sbjct: 8 IAILGAGSWGTALALVLARKGQKVRLWSYESDHV--DEMQAEGVNNRYLPNYPFPETLKA 65
Query: 190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249
D K +L G L +P + + +D +KGL + R++ +++
Sbjct: 66 YCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVA 124
Query: 250 QALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDV 309
L + P +SGPS A E+ LPTA+ +AS + + + + + L + R+ + D+
Sbjct: 125 TELG--QVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDM 182
Query: 310 TGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSG 369
GVE+ G++KN+LAIA GI G+ LG+N+ AAL+ +G +E+ L + G K T+TGL+G
Sbjct: 183 IGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGLAG 242
Query: 370 TGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMP 429
GD++LTC N SRNR G+ LG G + ++ Q EG+ V ALAQK+ ++MP
Sbjct: 243 LGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMP 302
Query: 430 VLTAVARIIDNELTPKKAVLELMSL-PQVE 458
+ V RI+ +L P++AV EL+ P+ E
Sbjct: 303 LTFQVHRILHEDLDPQQAVQELLERSPKAE 332
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8H2J9 | GPDA_ORYSJ | 1, ., 1, ., 1, ., 8 | 0.8060 | 0.7956 | 0.8318 | yes | no |
| Q949Q0 | GPDA2_ARATH | 1, ., 1, ., 1, ., 8 | 0.8463 | 0.8304 | 0.9095 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.XIII.3227.1 | hypothetical protein (366 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| eugene3.27090001 | Predicted protein (198 aa) | • | • | • | 0.939 | ||||||
| eugene3.32010002 | annotation not avaliable (118 aa) | • | • | • | 0.839 | ||||||
| gw1.IX.3521.1 | hypothetical protein; GTPase of unknown physiological role (By similarity) (489 aa) | • | 0.795 | ||||||||
| estExt_fgenesh4_pg.C_LG_X2045 | glycerol-3-phosphate dehydrogenase (EC-1.1.5.3) (631 aa) | • | • | • | 0.728 | ||||||
| fgenesh4_pg.C_LG_II002417 | pantoate-beta-alanine ligase (EC-6.3.2.1) (319 aa) | • | • | 0.687 | |||||||
| gw1.XII.1858.1 | anthranilate phosphoribosyltransferase (EC-2.4.2.18) (334 aa) | • | • | 0.674 | |||||||
| fgenesh4_pm.C_scaffold_44000008 | glycerol kinase (EC-2.7.1.30) (519 aa) | • | • | 0.675 | |||||||
| fgenesh4_pg.C_scaffold_9318000001 | Predicted protein (226 aa) | • | 0.564 | ||||||||
| estExt_Genewise1_v1.C_LG_VIII2938 | hypothetical protein (232 aa) | • | 0.564 | ||||||||
| gw1.XIV.733.1 | hypothetical protein (395 aa) | • | 0.561 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 460 | |||
| PRK00094 | 325 | PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosp | 1e-141 | |
| COG0240 | 329 | COG0240, GpsA, Glycerol-3-phosphate dehydrogenase | 1e-129 | |
| PRK12439 | 341 | PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-p | 5e-84 | |
| PRK14618 | 328 | PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-p | 1e-64 | |
| PRK14620 | 326 | PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-p | 2e-63 | |
| PRK14619 | 308 | PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-p | 6e-63 | |
| TIGR03376 | 342 | TIGR03376, glycerol3P_DH, glycerol-3-phosphate deh | 6e-56 | |
| pfam07479 | 145 | pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol- | 2e-54 | |
| pfam01210 | 157 | pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol- | 8e-45 | |
| PTZ00345 | 365 | PTZ00345, PTZ00345, glycerol-3-phosphate dehydroge | 3e-32 |
| >gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 406 bits (1047), Expect = e-141
Identities = 144/325 (44%), Positives = 201/325 (61%), Gaps = 3/325 (0%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ VLG GS+GTA+A +A V + RDP IN N RY P KLP+N+
Sbjct: 3 KIAVLGAGSWGTALAIVLARNGHD--VTLWARDPEQAAEINADRENPRYLPGIKLPDNLR 60
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
ATTD AL AD L A+P Q L+ + + P P + +KG+E T +++S+++
Sbjct: 61 ATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVL 120
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
+ L + P LSGPSFA E+ LPTA+V+AS D +LA VQ+L S + R+ T++D
Sbjct: 121 EEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTD 179
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V GVE+ GALKNV+AIAAGI G+ LG+N+ AAL+ +G +EI L +GA P T GL+
Sbjct: 180 VIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLA 239
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD++LTC LSRNR G+ LG G+ L++ L+ + VAEGV TA AV LA+K V+M
Sbjct: 240 GLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYELAKKLGVEM 299
Query: 429 PVLTAVARIIDNELTPKKAVLELMS 453
P+ AV ++ P++AV +LM
Sbjct: 300 PITEAVYAVLYEGKDPREAVEDLMG 324
|
Length = 325 |
| >gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 376 bits (969), Expect = e-129
Identities = 152/331 (45%), Positives = 202/331 (61%), Gaps = 4/331 (1%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ V+G GS+GTA+A +A + V + RD + INE N +Y P LP N+
Sbjct: 3 KIAVIGAGSWGTALAKVLARNGHE--VRLWGRDEEIVAEINETRENPKYLPGILLPPNLK 60
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
ATTD AL GAD + A+P Q L + + +S +KGLE T R++S+II
Sbjct: 61 ATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEII 120
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
+ L P P LSGPSFA E+ LPTA+VVAS D++ A VQ L +S + R+ TS+D
Sbjct: 121 EEEL--PDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTD 178
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V GVEI GALKNV+AIAAGI G+ LG+N+ AAL+ +G +E+ L +GAKP T GLS
Sbjct: 179 VIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLS 238
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD++LTC LSRNR G+ LG G LD+ L + QV EGV TA AV LA+K ++M
Sbjct: 239 GLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEM 298
Query: 429 PVLTAVARIIDNELTPKKAVLELMSLPQVEE 459
P+ AV R++ L PK+A+ ELM E
Sbjct: 299 PITEAVYRVLYEGLDPKEAIEELMGRDLKPE 329
|
Length = 329 |
| >gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 5e-84
Identities = 127/330 (38%), Positives = 185/330 (56%), Gaps = 6/330 (1%)
Query: 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQK 182
+R KVVVLGGGS+GT +A+ A + L +R IN+ H N RY +
Sbjct: 4 AKREPKVVVLGGGSWGTTVASICARRGPTL---QWVRSAETADDINDNHRNSRYLGNDVV 60
Query: 183 LPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLR 242
L + + ATTD A AD + +P L ++ + P +P +SL KGLE T
Sbjct: 61 LSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNM 120
Query: 243 MMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLR 302
MSQII + L P P L+GP+ A E+ A V+A D+ LA + L ++ R
Sbjct: 121 RMSQIIEEVL--PGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFR 178
Query: 303 ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362
+ T+ DV GVE+AGALKNV AIA G+ + +G N+ A ++A+ E+ L MG P
Sbjct: 179 VYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPE 238
Query: 363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQ 422
T GL+G GD+++TC SRNR VG +LG+G+ +D+I++SMNQVAEGV A V+ A
Sbjct: 239 TFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFAD 298
Query: 423 KYNVKMPVLTAVARIIDNELTPKKAVLELM 452
+Y + MP+ V +I++ T ++A L+
Sbjct: 299 EYGLNMPIAREVDAVINHGSTVEQAYRGLI 328
|
Length = 341 |
| >gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 1e-64
Identities = 113/329 (34%), Positives = 172/329 (52%), Gaps = 12/329 (3%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPEN 186
+V VLG G++GTA+A A+K + V + R P ++ + N Y P LP
Sbjct: 4 GMRVAVLGAGAWGTALAVLAASKG--VPVRLWARRPEFAAALAAERENREYLPGVALPAE 61
Query: 187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMM 244
+ T D + AL GAD+ + A+P + L G+ L ++S +KGL + L +
Sbjct: 62 LYPTADPEEALAGADFAVVAVPSKALRETLAGLP----RALGYVSCAKGLAPDGGRLSEL 117
Query: 245 SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304
++++ + LSGP+ A E+ LP A VVAS + LA VQ + R+
Sbjct: 118 ARVLEFL---TQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVY 174
Query: 305 TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364
TS D GVE+ GALKNV+A+AAG+V G+ LG+N+ AAL+ +G E+ +GA+ AT
Sbjct: 175 TSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATF 234
Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKY 424
GLSG GD++ T SRNR G + G + L + +V EG+ T A+ A A+ +
Sbjct: 235 YGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREH-LEAGGKVVEGLYTVKALDAWAKAH 293
Query: 425 NVKMPVLTAVARIIDNELTPKKAVLELMS 453
+P++ AVAR+ P + LM
Sbjct: 294 GHDLPIVEAVARVARGGWDPLAGLRSLMG 322
|
Length = 328 |
| >gnl|CDD|173083 PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 2e-63
Identities = 115/329 (34%), Positives = 195/329 (59%), Gaps = 8/329 (2%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ +LG GSFGTA+A +++KK V + R+ +SIN K N +Y P LP+N+
Sbjct: 2 KISILGAGSFGTAIAIALSSKKIS--VNLWGRNHTTFESINTKRKNLKYLPTCHLPDNIS 59
Query: 189 ATTDAKTALLGADYC-LHAMPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQ 246
+ L C + A+P Q + + + D ++ P + SKG+E ++L+ S+
Sbjct: 60 VKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSE 119
Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
I+ + L P P LSGPSFA E+ KLP ++V+A ++ L +++ L++++L+I S
Sbjct: 120 IVNEIL--PNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYS 177
Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR--WLATKMGAKPATI 364
D+ GV+I ALKN++AIA GIV+G NLGNN+ AA++ +G +EI+ + A T+
Sbjct: 178 QDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTL 237
Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKY 424
G S GD++LTC SRN + G ++G+G ++ ILS V EG ST +I+LA+K
Sbjct: 238 IGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKL 297
Query: 425 NVKMPVLTAVARIIDNELTPKKAVLELMS 453
N+++P+ ++ ++ ++ +K + ++S
Sbjct: 298 NIELPICESIYNLLYENISLEKTISVILS 326
|
Length = 326 |
| >gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (525), Expect = 6e-63
Identities = 98/228 (42%), Positives = 141/228 (61%), Gaps = 2/228 (0%)
Query: 225 PGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284
P ++ +KGL+ T R SQI A P P + LSGP+ + E+ LP A VVAS+
Sbjct: 74 PETIIVTATKGLDPETTRTPSQIWQAAF--PNHPVVVLSGPNLSKEIQQGLPAATVVASR 131
Query: 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVA 344
D A VQQ+ +S+ R+ T+SD G E+ G LKNV+AIAAG+ G+ LG N+ AALV
Sbjct: 132 DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVT 191
Query: 345 QGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSM 404
+ E+ + T +GA+ T GLSG GD++ TC LSRN VG L G+ L+ IL+ +
Sbjct: 192 RALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAEL 251
Query: 405 NQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELM 452
AEGV+TA ++ LAQ+ N+ +P+ V R++ E+TP++A+ ELM
Sbjct: 252 EGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQGEITPQQALEELM 299
|
Length = 308 |
| >gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 6e-56
Identities = 108/342 (31%), Positives = 165/342 (48%), Gaps = 29/342 (8%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQL------KVYMLMRDPAVCQS-----INEKHCNCRY 177
+V V+G G++GTA+A VA L V M + + + IN H N +Y
Sbjct: 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKY 60
Query: 178 FPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237
P KLP N++A D A GAD + +P QF + + +V P IS KGLE
Sbjct: 61 LPGIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120
Query: 238 LNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD----RKLANA 291
++ ++++S II + L P LSG + A E+ + + V +D A
Sbjct: 121 VSKDGVKLLSDIIEEELG---IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARV 177
Query: 292 VQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351
++ L + R++ DV GVEIAGALKNV+AIAAG V G+ G+N+ AA++ +G E+
Sbjct: 178 LKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMI 237
Query: 352 WLATKMG--AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM--NQ 406
A + G D++ TC RN VG +G+ L+++ + Q
Sbjct: 238 KFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQ 295
Query: 407 VAEGVSTAGAVIALAQKYNV--KMPVLTAVARIIDNELTPKK 446
+GV+TA V L + N + P+ AV +I+ L PKK
Sbjct: 296 SLQGVATAKEVHELLKNKNKDDEFPLFEAVYQILYEGLPPKK 337
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. Length = 342 |
| >gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 2e-54
Identities = 68/145 (46%), Positives = 92/145 (63%)
Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366
DV GVEI GALKNV+AIAAGI+ G+ G+N+ AAL+ +G E+ +G P T G
Sbjct: 1 EDVVGVEIGGALKNVIAIAAGILDGLGFGDNTKAALITRGLMEMIKFGAALGGGPETFFG 60
Query: 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426
L+G GD++ TC L RNR VG LG G+ L++I + QVAEGV TA V LA++ +
Sbjct: 61 LAGLGDLITTCTSELGRNRRVGEALGKGKSLEEIEKELGQVAEGVKTAKEVYELAKRKGL 120
Query: 427 KMPVLTAVARIIDNELTPKKAVLEL 451
P+ TAV RI+ L P++A+ L
Sbjct: 121 DFPLFTAVYRILYEGLKPEEAIEYL 145
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the C-terminal substrate-binding domain. Length = 145 |
| >gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 8e-45
Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ VLG GS+GTA+A +A + V + RD + + IN N +Y P KLP+N+
Sbjct: 1 KIAVLGAGSWGTALAKVLARNGHE--VRLWGRDEELIEEINTTRENVKYLPGIKLPDNLR 58
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
ATTD + A+ GAD + A+P Q L+ + + PG +SL+KG+E TL+++S+II
Sbjct: 59 ATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPGAILVSLTKGIEPGTLKLLSEII 118
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLA 289
+ L P P LSGPS A E+ LPTA VVAS+D++ A
Sbjct: 119 EEEL--PINPIAVLSGPSHAEEVALGLPTATVVASEDQQAA 157
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157 |
| >gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 89/332 (26%), Positives = 157/332 (47%), Gaps = 28/332 (8%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVY-----MLMRDPAV-----CQSINEKHCNCRYF 178
KV V+G G++G+A++ V + ++ M + + V IN KH N +Y
Sbjct: 13 KVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYL 72
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGI--SDYVDPGLPFISLSKGL 236
P KLP+N++A +D K A+ AD + +P QF S L I ++ + ISL+KG+
Sbjct: 73 PGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGI 132
Query: 237 ELNTLRMM--SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
+ + + S +I + L P ALSG + A ++ + + + +D+ A Q+
Sbjct: 133 IVENGKPVLCSDVIEEELG---IPCCALSGANVANDVAREEFSEATIGCEDKDDALIWQR 189
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
L + +I+ DV GVE+ GALKN++A+AAG G+ LG N+ +A++ G E++
Sbjct: 190 LFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFG 249
Query: 355 TKMGAKPATITGL--SGTGDIMLTCFVNLSRNRTVG---VRLGSGEKLDDILSSM--NQV 407
T G D++ TC RN + + ++I + + Q
Sbjct: 250 KIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQK 307
Query: 408 AEGVSTAGAVIALAQKYNVK--MPVLTAVARI 437
+G T V + + +++K P+ T +I
Sbjct: 308 LQGTVTLKEVYEVLESHDLKKEFPLFTVTYKI 339
|
Length = 365 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 460 | |||
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 100.0 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 100.0 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 100.0 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 100.0 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.97 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.96 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.96 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.95 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.95 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.95 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.95 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.95 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.94 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.93 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.92 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.92 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.92 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.91 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.91 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.9 | |
| PF07479 | 149 | NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate | 99.9 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.9 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.9 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.89 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.88 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.87 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.85 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.85 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.84 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.82 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.82 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.82 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.8 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.79 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.78 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.72 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.72 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.68 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.68 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.67 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.66 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.64 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.62 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.62 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.59 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.58 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.57 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.56 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.55 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.54 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.53 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.51 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.51 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.5 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.48 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.47 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.47 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 99.47 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.45 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.44 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.44 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.44 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.43 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.41 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.4 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.4 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.39 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.38 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.38 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.37 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.37 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.35 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.34 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.33 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.33 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.32 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.32 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.31 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.31 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.31 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.31 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.3 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 99.3 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.29 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.27 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 99.21 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.2 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.2 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.18 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 99.17 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.17 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 99.17 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 99.16 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.14 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.14 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 99.13 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 99.13 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 99.13 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.12 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.12 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.11 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.08 | |
| PLN02928 | 347 | oxidoreductase family protein | 99.04 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.03 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.98 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.97 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.93 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.93 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.9 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 98.9 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.89 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.89 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 98.88 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.88 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 98.87 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.87 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.87 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.83 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.81 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.79 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.71 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.65 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 98.62 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.6 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.52 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.47 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.47 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.41 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.39 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.36 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.35 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.34 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.3 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.27 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.21 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.18 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.15 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.15 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.15 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.15 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.13 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.11 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.11 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.1 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 98.06 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.05 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.01 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.0 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.99 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.94 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.94 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.93 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.92 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.91 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.9 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.89 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.87 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.86 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.84 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.82 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.79 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.78 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.76 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.75 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.75 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.74 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.74 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.74 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.73 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.71 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.68 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.67 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.67 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.65 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.65 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.65 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.63 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.61 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.59 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.58 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.58 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.58 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.58 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.57 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.56 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.56 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.56 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.55 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.54 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.54 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.52 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.51 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.51 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.51 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.51 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.5 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.5 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.48 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.48 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.47 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.47 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.44 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.42 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.4 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.4 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.38 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.38 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.38 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.34 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.32 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.29 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.24 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.24 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.23 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.23 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.21 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.21 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.2 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.19 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.18 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.14 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.09 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.08 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.07 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.07 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.04 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.02 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.01 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.0 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.99 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.99 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.97 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.96 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.95 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.95 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.93 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.92 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.91 | |
| PLN00106 | 323 | malate dehydrogenase | 96.9 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.86 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.86 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.86 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.85 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.85 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.84 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.83 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.82 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.77 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 96.7 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.66 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.66 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.66 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.66 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 96.61 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 96.61 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.6 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 96.57 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.57 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.54 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.53 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.5 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.48 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.48 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.47 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.46 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.44 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.44 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.43 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.43 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.4 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 96.4 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.4 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.37 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.35 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.34 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.32 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.25 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.18 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.18 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.17 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.13 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.12 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.11 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.09 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.07 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.05 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.04 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.04 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.01 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.94 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 95.94 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.93 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.92 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.9 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.9 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.86 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 95.86 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.86 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.81 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.77 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.74 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.72 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.71 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.68 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.68 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.67 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.66 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.62 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.61 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.55 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.54 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 95.53 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 95.52 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.45 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 95.43 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.39 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.32 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.31 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.31 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.3 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.3 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.3 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.27 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.25 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 95.24 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 95.19 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 95.19 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.19 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 95.18 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.16 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.15 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.12 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.03 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.03 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 95.01 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 94.95 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.91 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 94.86 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 94.86 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 94.82 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 94.8 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.8 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.78 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.77 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.76 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.75 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.74 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.74 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 94.73 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.7 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 94.68 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.67 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.66 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 94.61 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.6 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 94.59 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 94.55 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.52 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.41 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 94.4 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.36 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 94.28 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.26 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.23 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.22 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 94.2 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.2 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.19 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 94.17 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.14 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.14 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.09 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.08 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 94.07 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 94.07 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.05 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 94.02 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.01 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.99 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 93.94 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.91 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.91 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 93.89 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.87 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 93.87 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 93.87 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 93.83 | |
| PRK05868 | 372 | hypothetical protein; Validated | 93.83 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 93.81 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 93.79 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 93.76 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 93.76 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.76 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 93.76 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 93.73 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 93.73 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 93.72 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 93.71 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 93.67 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 93.65 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 93.63 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 93.61 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 93.6 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 93.59 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 93.59 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 93.57 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.54 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.5 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.49 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.47 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 93.46 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.41 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.35 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.32 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.32 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.3 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.29 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 93.27 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 93.27 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 93.25 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 93.24 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 93.22 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 93.21 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 93.18 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 93.18 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 93.17 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 93.17 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 93.15 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.08 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 93.07 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.07 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 93.04 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 93.02 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.01 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.99 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function pr | 92.94 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 92.93 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 92.92 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 92.9 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 92.86 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 92.85 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 92.83 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 92.81 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 92.79 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 92.74 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 92.73 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.71 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 92.5 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 92.5 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 92.5 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.49 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 92.48 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 92.46 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.44 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 92.34 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 92.34 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 92.34 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 92.3 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 92.3 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 92.28 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 92.28 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 92.27 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.27 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 92.26 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 92.22 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 92.22 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 92.22 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 92.18 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 92.14 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 92.11 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 92.08 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 92.07 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 92.03 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 92.0 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.98 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 91.95 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 91.93 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 91.92 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 91.87 | |
| PLN02477 | 410 | glutamate dehydrogenase | 91.82 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 91.82 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 91.81 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 91.8 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 91.78 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.76 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 91.76 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 91.72 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 91.68 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 91.65 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 91.63 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 91.61 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 91.58 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.58 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 91.56 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 91.53 |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-59 Score=455.54 Aligned_cols=329 Identities=46% Similarity=0.652 Sum_probs=320.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+|||+|||+|+||+++|..|+++| |+|++|.|+++.++++++.+.|.+|+|+..+|.++.+++|+.++++++|+|+++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng--~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG--HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC--CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 479999999999999999999999 999999999999999999988999999999999999999999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~ 286 (460)
||++.++++++++.++++++.++|+++||+.+++.+.+++++++.+|.. ++++++||+++.|++++.++.+++++.|.
T Consensus 79 vPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~--~~~vLSGPs~A~EVa~g~pta~~vas~d~ 156 (329)
T COG0240 79 VPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDN--PIAVLSGPSFAKEVAQGLPTAVVVASNDQ 156 (329)
T ss_pred CChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCC--eEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence 9999999999999999999999999999999999999999999998863 48899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
+.+++++.+|++..|+++.++|+.|+++++++||++|+++|+.+++.+|+|...++++++++||.+++.++|.+++++++
T Consensus 157 ~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~g 236 (329)
T COG0240 157 EAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMG 236 (329)
T ss_pred HHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHH
Q 012596 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK 446 (460)
Q Consensus 367 ~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~ 446 (460)
++|+||+++||++..|||+++|..+++|.+.++++..+++++||+++.+.++++++++|++||+.+++|++++++.+|++
T Consensus 237 LsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~~~~~~~ 316 (329)
T COG0240 237 LSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYEGLDPKE 316 (329)
T ss_pred cccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccC
Q 012596 447 AVLELMSLPQVEE 459 (460)
Q Consensus 447 ~~~~l~~~~~~~~ 459 (460)
+++.|+.|+.+.|
T Consensus 317 ~~~~L~~r~~k~E 329 (329)
T COG0240 317 AIEELMGRDLKPE 329 (329)
T ss_pred HHHHHhccccCCC
Confidence 9999999999987
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=423.25 Aligned_cols=327 Identities=28% Similarity=0.417 Sum_probs=307.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G-----~~~~V~v~~r~~~-----~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+.|||+|||+|+||+++|..|+++| ++++|.+|.|+++ .++.+++.+.|.+|+|+.++|.++.+++|+.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 3589999999999999999999986 2379999999986 48999999999999999999999999999999
Q ss_pred hcCCCcEEEEccchhcHHHHHHHhhh--cCCCCCeEEEeccCCccchh--hhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012596 196 ALLGADYCLHAMPVQFSSSFLEGISD--YVDPGLPFISLSKGLELNTL--RMMSQIIPQALRNPRQPFIALSGPSFALEL 271 (460)
Q Consensus 196 a~~~aDiVilaVp~~~~~~vl~~i~~--~l~~~~iIV~~~~Gi~~~~~--~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~ 271 (460)
+++++|+|+++||++.++++++++.+ .++++.++|++++|++.++. ..+++++++.++. ++.+++||+++.|+
T Consensus 90 av~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~---~~~~LsGPs~A~Ev 166 (365)
T PTZ00345 90 AVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI---PCCALSGANVANDV 166 (365)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC---CeEEEECCCHHHHH
Confidence 99999999999999999999999998 78777899999999998875 6789999998863 67899999999999
Q ss_pred hccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (460)
Q Consensus 272 ~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~ 351 (460)
..+.++.+++++.|.+..+.++++|++..|+++.++|+.|+|+++++||++|+++|+++++++|+|...+++.++++||.
T Consensus 167 a~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~ 246 (365)
T PTZ00345 167 AREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMK 246 (365)
T ss_pred HcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC--CCccccccccCCCceeeecccCCCccchHHHHhhCC---CChHHHHhhc--ccceehhhhHHHHHHHHHHc
Q 012596 352 WLATKMG--AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG---EKLDDILSSM--NQVAEGVSTAGAVIALAQKY 424 (460)
Q Consensus 352 ~la~a~G--i~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g---~~~e~~~~~~--~~~~eg~kd~g~vv~lA~~~ 424 (460)
++++++| .++++|++++|+||+++||++ +|||++|..+++| ++++++.+.+ ++++||..++..++++++++
T Consensus 247 ~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~ 324 (365)
T PTZ00345 247 LFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESH 324 (365)
T ss_pred HHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHc
Confidence 9999997 489999999999999999999 9999999999875 5788888776 89999999999999999999
Q ss_pred CC--CChHHHHHHHHHhcCCCHHHHHHHHhcCCCc
Q 012596 425 NV--KMPVLTAVARIIDNELTPKKAVLELMSLPQV 457 (460)
Q Consensus 425 gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~~ 457 (460)
++ ++|+.+++|+++.++.+|+++++.|++|+.+
T Consensus 325 ~i~~~~Pi~~~vy~il~~~~~~~~~~~~l~~r~~~ 359 (365)
T PTZ00345 325 DLKKEFPLFTVTYKIAFEGADPSSLIDVLSTNELR 359 (365)
T ss_pred CCCCCCCHHHHHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 99 8999999999999999999999999999875
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-52 Score=419.73 Aligned_cols=330 Identities=38% Similarity=0.586 Sum_probs=310.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~-~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
++|||+|||+|+||+++|..|+++| +|++|.|++++++.+++.+.+..|++ +..++.++.+++|++++++++|+||
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi 82 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV 82 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence 4689999999999999999999987 48899999999999999888878887 6677778888899988889999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
++||+++++++++++.+++++++++|+++||++.++.+.+++.+.+.++. ....++.||+++.++..|.++.+++++.
T Consensus 83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~ 160 (341)
T PRK12439 83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMP 160 (341)
T ss_pred EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeC
Confidence 99999999999999999999889999999999998888899999888764 3567899999999999999888888888
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 012596 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~ 364 (460)
+.+..+.++++|+..+++++.++|+.|++|++++||++++++|+++++.+++|...+++.++++|+.++++++|.+++++
T Consensus 161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~ 240 (341)
T PRK12439 161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF 240 (341)
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCH
Q 012596 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTP 444 (460)
Q Consensus 365 ~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~ 444 (460)
++++|+||+++||++..+||+++|..+++|++.+++.+++++++||...++.++++++++|+++|+.+++|+++.++.+|
T Consensus 241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~~~~~~ 320 (341)
T PRK12439 241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVINHGSTV 320 (341)
T ss_pred cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccCC
Q 012596 445 KKAVLELMSLPQVEEV 460 (460)
Q Consensus 445 ~~~~~~l~~~~~~~~~ 460 (460)
+++++.|++||.+.|+
T Consensus 321 ~~~~~~l~~~~~~~e~ 336 (341)
T PRK12439 321 EQAYRGLIAEVPGHEV 336 (341)
T ss_pred HHHHHHHhcCCCCccc
Confidence 9999999999999884
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-51 Score=409.04 Aligned_cols=318 Identities=34% Similarity=0.471 Sum_probs=301.3
Q ss_pred eEEEECcchHHHHHHHHHHhcC------CCCeEEEEeC-----CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKK------SQLKVYMLMR-----DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G------~~~~V~v~~r-----~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
||+|||+|+||+++|..|+++| ++++|++|.| +++..+.+++.+.+.+|+|+.++|.++.+++|+++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999987 4589999999 6677888888888999999999999999999999999
Q ss_pred CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc--hhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccC
Q 012596 198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN--TLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKL 275 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~--~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~ 275 (460)
+++|+||++||++.++++++++.+++++++++|+++||++.+ +...+++.+++.++. ++.+++||+++.|+.++.
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~---~~~~lsGP~~A~Eva~~~ 157 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI---PCGVLSGANLANEVAKEK 157 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC---CeEEeeCcchHHHHHcCC
Confidence 999999999999999999999999999889999999999988 888999999998853 688999999999999999
Q ss_pred CeEEEEccCC----HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012596 276 PTAMVVASKD----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (460)
Q Consensus 276 ~~~i~i~~~d----~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~ 351 (460)
++.+++++.+ .+..+.++++|++..|+++.++|+.|+|+++++||++|+++|+++++.+|+|...+++.++++||.
T Consensus 158 pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~ 237 (342)
T TIGR03376 158 FSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMI 237 (342)
T ss_pred CceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999888 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcc--ccccccCCCceeeecccCCCccchHHHHhhC-CCChHHHHhh--cccceehhhhHHHHHHHHHHcCC
Q 012596 352 WLATKMGAKPA--TITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSS--MNQVAEGVSTAGAVIALAQKYNV 426 (460)
Q Consensus 352 ~la~a~Gi~~~--~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~-g~~~e~~~~~--~~~~~eg~kd~g~vv~lA~~~gv 426 (460)
++++++|.+++ +|++++|+||+++||++ +||+++|..+++ |++.+++.+. +++++||...++.++++++++++
T Consensus 238 ~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i 315 (342)
T TIGR03376 238 KFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNK 315 (342)
T ss_pred HHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCC
Confidence 99999999887 99999999999999999 999999999999 9999999888 78999999999999999999999
Q ss_pred C--ChHHHHHHHHHhcCCCHHHHHHHH
Q 012596 427 K--MPVLTAVARIIDNELTPKKAVLEL 451 (460)
Q Consensus 427 ~--~P~~~~v~~ll~~~~~~~~~~~~l 451 (460)
+ +|+.+++|+++.++.+|+++++.|
T Consensus 316 ~~~~Pi~~~vy~il~~~~~~~~~~~~~ 342 (342)
T TIGR03376 316 DDEFPLFEAVYQILYEGLPPKKLPECL 342 (342)
T ss_pred CcCCCHHHHHHHHHhCCCCHHHHHhhC
Confidence 9 999999999999999999998753
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=371.67 Aligned_cols=322 Identities=36% Similarity=0.587 Sum_probs=294.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVila 206 (460)
|||+|||+|+||+++|..|+++| ++|++|+|++++++.+++.+.+..++++..++.++.++++..+++ .++|+||++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g--~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK--ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 68999999999999999999999 999999999999999998776777777777777888888888766 589999999
Q ss_pred cchhcHHHHHHHhhh-cCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012596 207 MPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~-~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d 285 (460)
||+++++++++++.+ ++++++.+|+++||++.++.....+.+.+.++. .++.++.||+++.++..+.++.+.+++.+
T Consensus 79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 999999999999998 888888899999999887666677888887765 35678899999988877777777788888
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCC--Cccc
Q 012596 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA--KPAT 363 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi--~~~~ 363 (460)
.+..+++.++|+..+++++.++|+.+.+|+|++||++++++|+..++.++.|...+++.+++.|+..+++++|+ ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 88889999999999999999999999999999999999999999999999899999999999999999999998 7899
Q ss_pred cccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCC
Q 012596 364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELT 443 (460)
Q Consensus 364 ~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~ 443 (460)
+++++++||++.+|++..+||+++|.++++|.+.+|+.+.+++++|+...++.++++++++|+++|+++++|+++.++.+
T Consensus 237 ~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~~~~~ 316 (326)
T PRK14620 237 LIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLYENIS 316 (326)
T ss_pred hhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCC
Confidence 99999999999999987899999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 012596 444 PKKAVLELMS 453 (460)
Q Consensus 444 ~~~~~~~l~~ 453 (460)
|+++++.|+.
T Consensus 317 ~~~~~~~~~~ 326 (326)
T PRK14620 317 LEKTISVILS 326 (326)
T ss_pred HHHHHHHHhC
Confidence 9999999874
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=361.14 Aligned_cols=326 Identities=35% Similarity=0.523 Sum_probs=286.6
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+.+|||+|||+|+||++||..|+++| ++|++|+|++++.+.+++.+.+..++++..++.++..+++++++++++|+|
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G--~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~V 78 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKG--VPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFA 78 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEE
Confidence 345789999999999999999999999 999999999999998887766555666666666677788888888999999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccch--hhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~--~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+|+|+++++++++. ++++.++|++++|+.+.+ .+.+++.+.+... ..+.++.||+++.++..+.++..++
T Consensus 79 i~~v~~~~~~~v~~~----l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~ 151 (328)
T PRK14618 79 VVAVPSKALRETLAG----LPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVV 151 (328)
T ss_pred EEECchHHHHHHHHh----cCcCCEEEEEeeccccCCCccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEE
Confidence 999999988777755 456789999999998764 4466666654221 2356899999999988887777778
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
++++.+.+++++++|+..+++++.++|+.|++|++++||++++++|++.++++++|...+++.++++|+..+++++|+++
T Consensus 152 ~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~ 231 (328)
T PRK14618 152 ASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEE 231 (328)
T ss_pred EeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcC
Q 012596 362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNE 441 (460)
Q Consensus 362 ~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~ 441 (460)
++++++++.||++.+|.+..+||+.+|.++.+|...+++. ..+++.|+.||+++++++++++|+++|+.+.+|+++.++
T Consensus 232 ~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~-~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~~~~ 310 (328)
T PRK14618 232 ATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLE-AGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVARGG 310 (328)
T ss_pred cchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHH-HcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence 9999999999999999999999998898998886665443 236789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCccC
Q 012596 442 LTPKKAVLELMSLPQVEE 459 (460)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~ 459 (460)
.+|+++++.|+++|.+.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~ 328 (328)
T PRK14618 311 WDPLAGLRSLMGREAKEE 328 (328)
T ss_pred CCHHHHHHHHhcCCCCCC
Confidence 999999999999998875
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=352.37 Aligned_cols=325 Identities=44% Similarity=0.671 Sum_probs=291.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||||+|||+|+||++||..|+++| ++|++|+|++++++.+++.+....+.++..++.++.++++++++++++|+||+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNG--HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 479999999999999999999999 999999999999999988766555555555665677778888888899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~ 286 (460)
||+.+++++++++.+.+++++++|+++||+.+++.+.+++.+.+.++.. ....++.||+++.+...+.+..+.+++.+.
T Consensus 79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 79 VPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 9999999999999998888999999999999987778888888876531 246789999999887777777677888889
Q ss_pred HHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
+.++++.++|+..++++..++|+.+.+|+|+++|++++++|.+.++++++|.+.++...+++|+..+|+++|+|++++.+
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHH
Q 012596 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK 446 (460)
Q Consensus 367 ~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~ 446 (460)
+.+.+|++.++.++.++++.+|+++..|++.+++.+.+++..|+.||+++++++|+++|+++|+++++|+++.++.+|++
T Consensus 238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~~~~~~~~~ 317 (325)
T PRK00094 238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYELAKKLGVEMPITEAVYAVLYEGKDPRE 317 (325)
T ss_pred ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHcCCCCHHH
Confidence 88888888788888899999999999888776676666789999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 012596 447 AVLELMSL 454 (460)
Q Consensus 447 ~~~~l~~~ 454 (460)
.++.|++|
T Consensus 318 ~~~~~~~~ 325 (325)
T PRK00094 318 AVEDLMGR 325 (325)
T ss_pred HHHHHhcC
Confidence 99999875
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=347.50 Aligned_cols=303 Identities=37% Similarity=0.574 Sum_probs=278.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.|||+|||+|+||++||..|+++| ++|++|+|++. ++++++++++|+||++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G--~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG--HRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 479999999999999999999999 99999999852 2567778899999999
Q ss_pred cchhcHHHHHHHhhhc-CCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012596 207 MPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~-l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d 285 (460)
+|+.+++++++++.++ +++++++|++++|+++++...+++.+...++. .++.++.||.++.++..+.++..++++++
T Consensus 55 vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~ 132 (308)
T PRK14619 55 VSMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRD 132 (308)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCC
Confidence 9999999999998764 67889999999999998877888888777653 35667899999999887777777888999
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 012596 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT 365 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~ 365 (460)
.+.+++++++|+..+++++.++|+.|.+|++++||++++++|++.++++++|...+++.++++|+..+++++|+++++++
T Consensus 133 ~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~ 212 (308)
T PRK14619 133 LAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFY 212 (308)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHH
Q 012596 366 GLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPK 445 (460)
Q Consensus 366 ~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~ 445 (460)
++++.||+..+|.+..+|||++|+++..|++.+++.+.++.++||.+|++.++++++++|+++|+.+.+|+++.++.+|+
T Consensus 213 ~~~g~gd~~~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~~~~~~~ 292 (308)
T PRK14619 213 GLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQGEITPQ 292 (308)
T ss_pred cccchhhhheeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCCCHH
Confidence 99999999999988889999999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccCC
Q 012596 446 KAVLELMSLPQVEEV 460 (460)
Q Consensus 446 ~~~~~l~~~~~~~~~ 460 (460)
++++.|++|+.+.|+
T Consensus 293 ~~~~~l~~~~~~~~~ 307 (308)
T PRK14619 293 QALEELMERDLKPEF 307 (308)
T ss_pred HHHHHHHcCCCcccc
Confidence 999999999988774
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=318.52 Aligned_cols=326 Identities=36% Similarity=0.535 Sum_probs=290.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-------HHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-------VCQSINEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G-----~~~~V~v~~r~~~-------~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
...||+|||+|+||+++|+.+.++- +..+|.+|.+..+ ..+-++..+.|.+|+|++++|.++.+.+|+
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 3579999999999999999998753 2357999986542 345678889999999999999999999999
Q ss_pred HhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc----hhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 194 KTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN----TLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~----~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
.+++.++|+++..+|.+.+..++++|..+++++...||+.+|++.. ..+.+++.+.+.+|. ++.++.||+.+.
T Consensus 100 ~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI---~~~vL~GaNiA~ 176 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGI---PCSVLMGANIAS 176 (372)
T ss_pred HHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCC---CceeecCCchHH
Confidence 9999999999999999999999999999999999999999999853 246889999999985 678999999999
Q ss_pred HHhccCCeEEEEccCCHHHHH-HHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012596 270 ELMNKLPTAMVVASKDRKLAN-AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (460)
Q Consensus 270 e~~~g~~~~i~i~~~d~~~~~-~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~ 348 (460)
|++++..+...+++.++.... .+.++|+...|++...+|..+++++++|||++|+++|+.+|+.+++|...++++.++.
T Consensus 177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~ 256 (372)
T KOG2711|consen 177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLL 256 (372)
T ss_pred HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHH
Confidence 999888877788887654444 5999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CC-CccccccccCCCceeeecccCCCccchHHHHhhCC-CChHHHHhhc--ccceehhhhHHHHHHHHHH
Q 012596 349 EIRWLATKM-GA-KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSM--NQVAEGVSTAGAVIALAQK 423 (460)
Q Consensus 349 E~~~la~a~-Gi-~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g-~~~e~~~~~~--~~~~eg~kd~g~vv~lA~~ 423 (460)
|+..|++.+ +- .+.++.+.+|.+|+++||+. .||++.+..+.++ +++++.++.+ +|.++|..+++.++++.++
T Consensus 257 Em~~F~~~f~p~~~~~t~~escGvaDlitTC~g--GRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~ 334 (372)
T KOG2711|consen 257 EMIKFATHFYPGSKPTTFFESCGVADLITTCYG--GRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQK 334 (372)
T ss_pred HHHHHHHHhCCCCCcceeeccccHHHHHHHHhc--CccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHH
Confidence 999999885 44 68899999999999999998 6888888877654 7776555544 7899999999999999999
Q ss_pred cCC--CChHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012596 424 YNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ 456 (460)
Q Consensus 424 ~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~ 456 (460)
.|+ .+|+..++|+++.++..+.+.++.|.++|-
T Consensus 335 ~~l~~kfPlftaVykI~~~~~~~~~lle~l~~~~~ 369 (372)
T KOG2711|consen 335 KGLVEKFPLFTAVYKICYERLPPQALLECLRNHPE 369 (372)
T ss_pred cChhhhCcHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence 999 899999999999999999999999998874
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=248.16 Aligned_cols=268 Identities=19% Similarity=0.219 Sum_probs=207.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~-~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+||+|||+|.||.+||.+|.++| |+|++|||++++ ++.+.+.|. ..+.++.|+++.+|+||+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG--~~v~v~~r~~~ka~~~~~~~Ga--------------~~a~s~~eaa~~aDvVitm 64 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG--HEVTVYNRTPEKAAELLAAAGA--------------TVAASPAEAAAEADVVITM 64 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC--CEEEEEeCChhhhhHHHHHcCC--------------cccCCHHHHHHhCCEEEEe
Confidence 58999999999999999999999 999999999998 566666553 3556788899999999999
Q ss_pred cch-hcHHHHHH---HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MPV-QFSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp~-~~~~~vl~---~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|++ .++++|+. .+.+.+++++++|++++ +.+++.+.+++.+++. | ..++..|..+........+..++.
T Consensus 65 v~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~~a~~~a~~~~~~-G-----~~~lDAPVsGg~~~A~~GtLtimv 137 (286)
T COG2084 65 LPDDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPETARELAAALAAK-G-----LEFLDAPVSGGVPGAAAGTLTIMV 137 (286)
T ss_pred cCCHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHHHHHHHHHHHHhc-C-----CcEEecCccCCchhhhhCceEEEe
Confidence 996 46899884 68888999999999997 8888777777777664 4 346777777665554455667888
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
|++.+.+++++++|+..|-++++.++. |.+..+|+.||.+......++.|++.++++.|+|++
T Consensus 138 GG~~~~f~r~~pvl~~~g~~i~~~G~~-----------------G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~ 200 (286)
T COG2084 138 GGDAEAFERAKPVLEAMGKNIVHVGPV-----------------GAGQAAKLANNILLAGNIAALAEALALAEKAGLDPD 200 (286)
T ss_pred CCCHHHHHHHHHHHHHhcCceEEECCC-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 899999999999999999999888774 445556777888888999999999999999999999
Q ss_pred cccccc--CCCcee-eecc--cCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 363 TITGLS--GTGDIM-LTCF--VNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 363 ~~~~~~--~~gd~~-~t~~--s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
.+.++. +.++.. ...+ ....++|++++ .+. ...||++++.+.|++.|+++|+.+++.++
T Consensus 201 ~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F------~v~----------~~~KDl~la~~~A~~~g~~lP~~~~~~~l 264 (286)
T COG2084 201 VVLEVISGGAAGSWILENYGPRMLEGDFSPGF------AVD----------LMLKDLGLALDAAKELGAPLPLTALAAEL 264 (286)
T ss_pred HHHHHHhccccCChHHHhhcchhhcCCCCcch------hHH----------HHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 988752 212211 1111 11223333332 222 24599999999999999999999998888
Q ss_pred Hh-------cCCCHHHHHHHH
Q 012596 438 ID-------NELTPKKAVLEL 451 (460)
Q Consensus 438 l~-------~~~~~~~~~~~l 451 (460)
+. +++|.+..++.+
T Consensus 265 y~~~~~~G~g~~D~sal~~~l 285 (286)
T COG2084 265 YAKAAAAGGGEEDFSALIKLL 285 (286)
T ss_pred HHHHHhcCCCccChHHHHHHh
Confidence 85 444555555543
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=240.52 Aligned_cols=285 Identities=14% Similarity=0.157 Sum_probs=199.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCcc-CCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~-~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..|||+|||+|+||+.+|..|+++| ++|++|.|++ .+.+++.|..... .++.... .+.+.+++++ ...+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~-~~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSD--YEAVRENGLQVDSVHGDFHLP-PVQAYRSAED-MPPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCC--HHHHHhCCeEEEeCCCCeeec-CceEEcchhh-cCCCCEEE
Confidence 4589999999999999999999999 9999999986 3566666653221 1111111 1344445443 57899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC-CE-----EEEECcccHHHHhccCCeE
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-PF-----IALSGPSFALELMNKLPTA 278 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~-~~-----~v~~gP~~a~e~~~g~~~~ 278 (460)
+|||+.++.++++.+.+.+.+++.|++++||++.. +.+.+.++...+ .. +...+|+.......| .
T Consensus 78 lavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g---~ 148 (313)
T PRK06249 78 VGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYG---R 148 (313)
T ss_pred EEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCC---c
Confidence 99999999999999999998899999999999875 345555543211 11 123344433322222 2
Q ss_pred EEEcc---CC-----HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc----CCCcHHHHHHHHH
Q 012596 279 MVVAS---KD-----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN----LGNNSMAALVAQG 346 (460)
Q Consensus 279 i~i~~---~d-----~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k----l~~n~~~al~~~~ 346 (460)
+.++. .+ .+..+.+.++|+..|+.+..++|+....|.|++.|+..++.+...+.. +.+.....++..+
T Consensus 149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~ 228 (313)
T PRK06249 149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRAL 228 (313)
T ss_pred EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHH
Confidence 33432 22 466788999999999999999999999999999997655444443333 2334467899999
Q ss_pred HHHHHHHHHHcCCCccc-cccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcC
Q 012596 347 CSEIRWLATKMGAKPAT-ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYN 425 (460)
Q Consensus 347 ~~E~~~la~a~Gi~~~~-~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~g 425 (460)
+.|+.+++++.|++... +.+. .+..+........+|-+|+.+|+++| ....+|.++++|+++|
T Consensus 229 ~~E~~~va~a~Gi~~~~~~~~~-----~~~~~~~~~~~~sSM~qD~~~gr~tE-----------id~i~G~vv~~a~~~G 292 (313)
T PRK06249 229 MAEVIQGAAACGHTLPEGYADH-----MLAVTERMPDYRPSMYHDFEEGRPLE-----------LEAIYANPLAAARAAG 292 (313)
T ss_pred HHHHHHHHHhcCCCCChhHHHH-----HHHHhhcCCCCCChHHHHHHCCCccc-----------HHHHhhHHHHHHHHhC
Confidence 99999999999998432 1110 00011111111235668888887765 3367899999999999
Q ss_pred CCChHHHHHHHHHhcC
Q 012596 426 VKMPVLTAVARIIDNE 441 (460)
Q Consensus 426 v~~P~~~~v~~ll~~~ 441 (460)
+++|+++.+|.+++..
T Consensus 293 i~~P~~~~l~~~l~~~ 308 (313)
T PRK06249 293 CAMPRVEMLYQALEFL 308 (313)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 9999999999998754
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=235.76 Aligned_cols=283 Identities=18% Similarity=0.221 Sum_probs=203.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|+||+.+|..|+++| ++|++++|++++++.+++.|.... .+ .....+..++++.++ +++|+||+++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~g~~~~--~~-~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG--HDVTLVARRGAHLDALNENGLRLE--DG-EITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECChHHHHHHHHcCCccc--CC-ceeecccCCCChhHc-CCCCEEEEec
Confidence 68999999999999999999999 999999998888888887765431 11 111112334566654 8999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC------CEEEEECcccHHHHhccCCeEEEE
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ------PFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~------~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+.++.++++.+.+.+.+++.||+++||++.. +.+.+.++.... ..+...+|+...+...+ .+.+
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g---~~~i 145 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGG---RLKI 145 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCC---CEEE
Confidence 99999999999999998889999999999764 234444432111 11234566655543332 2345
Q ss_pred ccCC--HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc----CCCcHHHHHHHHHHHHHHHHHH
Q 012596 282 ASKD--RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN----LGNNSMAALVAQGCSEIRWLAT 355 (460)
Q Consensus 282 ~~~d--~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k----l~~n~~~al~~~~~~E~~~la~ 355 (460)
+..+ .+..+.+.++|+..++.+..++|+...+|.|+++|+.....+...+.. +.++....++..++.|+.++++
T Consensus 146 g~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 225 (304)
T PRK06522 146 GEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAE 225 (304)
T ss_pred eCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 5432 244788999999999999999999999999999998665554444443 3346678999999999999999
Q ss_pred HcCCCccc--cccccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHH
Q 012596 356 KMGAKPAT--ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLT 432 (460)
Q Consensus 356 a~Gi~~~~--~~~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~ 432 (460)
++|+++.. +.+. +.........+ .+|-+|+.+|+++| .....|+++++|+++|+++|+++
T Consensus 226 a~G~~~~~~~~~~~------~~~~~~~~~~~~sSm~~D~~~gr~tE-----------id~i~G~~v~~a~~~gv~~P~~~ 288 (304)
T PRK06522 226 AEGVHLSVEEVREY------VRQVIQKTAANTSSMLQDLEAGRPTE-----------IDAIVGYVLRRGRKHGIPTPLND 288 (304)
T ss_pred HcCCCCChHHHHHH------HHHHhhccCCCCchHHHHHHcCCCcc-----------cchhccHHHHHHHHcCCCCcHHH
Confidence 99988532 1111 00001011122 24667888887765 23567999999999999999999
Q ss_pred HHHHHHhcCC
Q 012596 433 AVARIIDNEL 442 (460)
Q Consensus 433 ~v~~ll~~~~ 442 (460)
++|++++..+
T Consensus 289 ~l~~~~~~~~ 298 (304)
T PRK06522 289 ALYGLLKAKE 298 (304)
T ss_pred HHHHHHHHHH
Confidence 9999987543
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=230.77 Aligned_cols=283 Identities=16% Similarity=0.146 Sum_probs=200.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~-~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|||+|+||+.+|..|+++| ++|++|+| +++.+.+++.|....... +...+ ....++.+++.+++|+||+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVP--GPVITDPEELTGPFDLVILA 75 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEec-HHHHHHHHhCCeEEEeCCCeEEec--ceeecCHHHccCCCCEEEEE
Confidence 68999999999999999999999 99999999 778888887765433211 11111 22345666666899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEE------EEECcccHHHHhccCCeEEE
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI------ALSGPSFALELMNKLPTAMV 280 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~------v~~gP~~a~e~~~g~~~~i~ 280 (460)
+|+.+++++++.+.+.+.++++||+++||++.. +.+.+.++...+..+ ...+|+..... ....+.
T Consensus 76 vk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~---~~~~~~ 146 (305)
T PRK12921 76 VKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQL------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQR---ADHRLT 146 (305)
T ss_pred ecccCHHHHHHHHHhhcCCCCEEEEeeCCCChH------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEc---CCCcEE
Confidence 999999999999999888889999999999764 234444443211111 11233322211 122344
Q ss_pred EccC---CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc----CCCcHHHHHHHHHHHHHHHH
Q 012596 281 VASK---DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN----LGNNSMAALVAQGCSEIRWL 353 (460)
Q Consensus 281 i~~~---d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k----l~~n~~~al~~~~~~E~~~l 353 (460)
++.. ..+..+.+.++|...++.+...+|+...+|.|++.|+...+.+...+.. +.++....++..++.|+.++
T Consensus 147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v 226 (305)
T PRK12921 147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAV 226 (305)
T ss_pred EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 5432 2466778999999999999999999999999999997655544444333 33455678999999999999
Q ss_pred HHHcCCCcccc-c-cccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChH
Q 012596 354 ATKMGAKPATI-T-GLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPV 430 (460)
Q Consensus 354 a~a~Gi~~~~~-~-~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~ 430 (460)
+++.|+++..- . ... ..+ +..+ ..+ .+|-+|+.+|+++| .....|+++++|+++|+++|+
T Consensus 227 ~~a~G~~~~~~~~~~~~---~~~--~~~~-~~~~sSm~~D~~~gr~tE-----------id~i~G~vv~~a~~~gv~~P~ 289 (305)
T PRK12921 227 ARAEGAPLRDDVVEEIV---KIF--AGAP-GDMKTSMLRDMEKGRPLE-----------IDHLQGVLLRRARAHGIPTPI 289 (305)
T ss_pred HHHcCCCCChhHHHHHH---HHH--hccC-CCCCcHHHHHHHcCCccc-----------HHHHHHHHHHHHHHhCCCCcH
Confidence 99999985421 1 100 000 0111 122 24667888777664 335789999999999999999
Q ss_pred HHHHHHHHhcC
Q 012596 431 LTAVARIIDNE 441 (460)
Q Consensus 431 ~~~v~~ll~~~ 441 (460)
++++|++++..
T Consensus 290 ~~~l~~~~~~~ 300 (305)
T PRK12921 290 LDTVYALLKAY 300 (305)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=233.22 Aligned_cols=288 Identities=18% Similarity=0.204 Sum_probs=206.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|+|+|+||+.+|..|+++| ++|+++.|++. ++++++.|+......+.... ....+.+. +....+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~-~~~~~~~~-~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGGNFTT-PVVAATDA-EALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCCcccc-ccccccCh-hhcCCCCEEEEEe
Confidence 79999999999999999999999 89999999986 99999988755433331111 11222333 4467999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC------CCCEEEEECcccHHHHhccCCeEEEE
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~------~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+.+++++++.+.+.+++++.|+.+|||++.. +.+.+.++.. ....++..||+.....+.|......+
T Consensus 76 Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~~------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~ 149 (307)
T COG1893 76 KAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGEL 149 (307)
T ss_pred ccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccC
Confidence 99999999999999999999999999999986 2344443322 11223445555544332222221122
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHHHc
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKM 357 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~----~n~~~al~~~~~~E~~~la~a~ 357 (460)
.+++++..+.+.++|+..++++.+.+|+....|.|++.|......+.....+++ +.....++.+.+.|+..++.+.
T Consensus 150 ~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~ 229 (307)
T COG1893 150 RGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAE 229 (307)
T ss_pred CCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhc
Confidence 344457899999999999999999999999999999999866654444444333 4456789999999999999999
Q ss_pred CCCccc-cccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHH
Q 012596 358 GAKPAT-ITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVA 435 (460)
Q Consensus 358 Gi~~~~-~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~ 435 (460)
|+..+. ..+- ....+......++ +|-+|+.+|+++| ..+..|+++++|+++|+++|+++++|
T Consensus 230 g~~~~~~~~~~-----v~~~~~~~~~~~~sSM~qDl~~gr~tE-----------id~i~G~vv~~a~~~gi~~P~~~~L~ 293 (307)
T COG1893 230 GVELPEEVVER-----VLAVIRATDAENYSSMLQDLEKGRPTE-----------IDAINGAVVRLAKKHGLATPVNDTLY 293 (307)
T ss_pred cCCCCHHHHHH-----HHHHHHhcccccCchHHHHHHcCCccc-----------HHHHhhHHHHHHHHhCCCCcHHHHHH
Confidence 965321 1110 0000111112333 4668888877664 34678999999999999999999999
Q ss_pred HHHhcCC
Q 012596 436 RIIDNEL 442 (460)
Q Consensus 436 ~ll~~~~ 442 (460)
++++..+
T Consensus 294 ~lvk~~e 300 (307)
T COG1893 294 ALLKAKE 300 (307)
T ss_pred HHHHHHH
Confidence 9997543
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=231.72 Aligned_cols=287 Identities=18% Similarity=0.272 Sum_probs=199.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC---CCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~---l~~~i~a~~~~~ea~~~aDiV 203 (460)
||||+|||+|.||+++|..|+++| ++|++|+|++ +.+.+++.|.......+.. .+.++..+++. +++.++|+|
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G--~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG--ADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC--CcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 589999999999999999999999 9999999975 4577777665433222211 12334556666 457899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CC----E-EEEECcccHHHHhccCCe
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QP----F-IALSGPSFALELMNKLPT 277 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~----~-~v~~gP~~a~e~~~g~~~ 277 (460)
|+|||..+..++++.+.+.+.++++|++++||+... +.+.+.++... .. . ++..||+.+.....|.
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~-- 149 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA-- 149 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc--
Confidence 999999999999999999998999999999998764 23444443211 11 1 1355666554322222
Q ss_pred EEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcc----cCCCcHHHHHHHHHHHHHHHH
Q 012596 278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGM----NLGNNSMAALVAQGCSEIRWL 353 (460)
Q Consensus 278 ~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~----kl~~n~~~al~~~~~~E~~~l 353 (460)
+.++. .+.++++.++|+..++++.+.+|+.+.+|.|+++|+. .+.....+. -+.+.....++..++.|+..+
T Consensus 150 -l~~~~--~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~v 225 (341)
T PRK08229 150 -LAIEA--SPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYRRCLALAQREALRV 225 (341)
T ss_pred -eEecC--CchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHH
Confidence 23432 2457899999999999999999999999999999973 222222222 233455678899999999999
Q ss_pred HHHcCCCcccccccc--C------CCceeee-----cc-cCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHH
Q 012596 354 ATKMGAKPATITGLS--G------TGDIMLT-----CF-VNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIA 419 (460)
Q Consensus 354 a~a~Gi~~~~~~~~~--~------~gd~~~t-----~~-s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~ 419 (460)
+++.|++++.+..+. + +.+.+.. .. .......+|-+|+..|+++| .....|++++
T Consensus 226 a~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sm~~D~~~~r~tE-----------i~~i~G~i~~ 294 (341)
T PRK08229 226 LKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLARSSMSDDLAAGRATE-----------IDWINGEIVR 294 (341)
T ss_pred HHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCccCchHHHHHHcCCcch-----------HHHHhhHHHH
Confidence 999999987654321 0 0000000 00 00011124567777776664 3357799999
Q ss_pred HHHHcCCCChHHHHHHHHHhc
Q 012596 420 LAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 420 lA~~~gv~~P~~~~v~~ll~~ 440 (460)
+|+++|+++|+++++|++++.
T Consensus 295 ~a~~~gv~~P~~~~~~~~~~~ 315 (341)
T PRK08229 295 LAGRLGAPAPVNARLCALVHE 315 (341)
T ss_pred HHHHcCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=221.34 Aligned_cols=272 Identities=17% Similarity=0.180 Sum_probs=207.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|||||+|+||..|+.+|.++| |.|++|||+.++++.+.+.|. ++.++|.|+.+.+|+||.+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G--~kVtV~dr~~~k~~~f~~~Ga--------------~v~~sPaeVae~sDvvitm 98 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAG--YKVTVYDRTKDKCKEFQEAGA--------------RVANSPAEVAEDSDVVITM 98 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcC--CEEEEEeCcHHHHHHHHHhch--------------hhhCCHHHHHhhcCEEEEE
Confidence 579999999999999999999999 999999999999999999874 4567899999999999999
Q ss_pred cchh-cHHHHHHH---hhhcCCCCCeE-EEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 207 MPVQ-FSSSFLEG---ISDYVDPGLPF-ISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 207 Vp~~-~~~~vl~~---i~~~l~~~~iI-V~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
||+. ++++++.+ +...++++... |++++ ++|++...+.+.+... .+.++.+|.++........+.+++
T Consensus 99 v~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmST-idp~~s~ei~~~i~~~------~~~~vDAPVSGg~~~A~~G~Ltim 171 (327)
T KOG0409|consen 99 VPNPKDVKDVLLGKSGVLSGIRPGKKATVDMST-IDPDTSLEIAKAISNK------GGRFVDAPVSGGVKGAEEGTLTIM 171 (327)
T ss_pred cCChHhhHHHhcCCCcceeeccCCCceEEeccc-cCHHHHHHHHHHHHhC------CCeEEeccccCCchhhhcCeEEEE
Confidence 9964 57887754 45555676665 88886 8988766666666543 345788888877655555566788
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
+++|++.+++..++|+.+|-.+.+.+.. |.+...|+++|.+.+....+++|++.+|.++|+|+
T Consensus 172 agGde~~~~~~~~~~~~mGk~~~~~G~~-----------------GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~ 234 (327)
T KOG0409|consen 172 AGGDEALFEAASPVFKLMGKNVVFLGGV-----------------GNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDA 234 (327)
T ss_pred ecCcHHHHHHHHHHHHHhcceEEEeccc-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 8899999999999999999887765542 45566778888888889999999999999999999
Q ss_pred cccccccCCCcee-----eecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHH
Q 012596 362 ATITGLSGTGDIM-----LTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR 436 (460)
Q Consensus 362 ~~~~~~~~~gd~~-----~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ 436 (460)
.++.++...|... ..+.....++| ..|+.++. ..||++++.+.|...++++|+.....+
T Consensus 235 ~~l~eiln~G~~~S~~~~~~~p~m~k~dy------~p~f~~~~----------m~KDLgla~~~a~~~~~~~P~~slA~q 298 (327)
T KOG0409|consen 235 KKLLEILNTGRCWSSMFYNPVPGMLKGDY------NPGFALKL----------MVKDLGLALNAAESVKVPMPLGSLAHQ 298 (327)
T ss_pred HHHHHHHhcCCcccHHHhCcCchhhcCCC------CCcchHHH----------HHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 9888753322211 11111112222 22333332 359999999999999999999988877
Q ss_pred HHh-------cCCCHHHHHHHHhcC
Q 012596 437 IID-------NELTPKKAVLELMSL 454 (460)
Q Consensus 437 ll~-------~~~~~~~~~~~l~~~ 454 (460)
+++ .+++...+++.+...
T Consensus 299 ly~~~~a~G~g~~Dfs~V~~~~~~~ 323 (327)
T KOG0409|consen 299 LYKSMKALGYGDKDFSAVYRAFRRL 323 (327)
T ss_pred HHHHHHhcCCCccccHHHHHHHHHh
Confidence 774 556666666665543
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=230.19 Aligned_cols=282 Identities=15% Similarity=0.098 Sum_probs=195.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCC-CCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQ-KLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~-~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.|||+|+|+|+||+.+|..|+++| ++|++++|+.+++++++++ |.......+. ..+ +.. .+. +....+|+||
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~--~~~-~~~-~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYA--IPA-ETA-DAAEPIHRLL 75 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEEeeCCcceeec--cCC-CCc-ccccccCEEE
Confidence 379999999999999999999999 8999999998899999865 4422111111 111 111 122 2246799999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEE-----EECcccHHHHhccCCeE
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIA-----LSGPSFALELMNKLPTA 278 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v-----~~gP~~a~e~~~g~~~~ 278 (460)
+|||++++.++++.+.+++.+++.||++|||++.. +.+.+.++... ....+ ..+|+...+.. ...
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~---~g~ 146 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAG---HGF 146 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCH------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEec---eEE
Confidence 99999999999999999999999999999999976 34555555321 11111 12343332211 122
Q ss_pred EEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHHHHHHHc
Q 012596 279 MVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM-AALVAQGCSEIRWLATKM 357 (460)
Q Consensus 279 i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~-~al~~~~~~E~~~la~a~ 357 (460)
+.++..+.+..+++.++|...|+.+.+++|+.+..|.|++.|+..+..+.......+.-.. ..++..++.|+.+++++.
T Consensus 147 ~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~ 226 (305)
T PRK05708 147 TWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC 226 (305)
T ss_pred EEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc
Confidence 3466544566788999999999999999999999999999998655555554444442111 156789999999999999
Q ss_pred CCCccc--cccccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHH
Q 012596 358 GAKPAT--ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV 434 (460)
Q Consensus 358 Gi~~~~--~~~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v 434 (460)
|+.... +.+.. ...+... ..+ .+|-+|+.+|+++| ....+|+++++|+++|+++|+++++
T Consensus 227 G~~~~~~~~~~~~-----~~~~~~~-~~~~sSM~qD~~~gR~tE-----------id~i~G~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 227 GQPAAAANLHEEV-----QRVIQAT-AANYSSMYQDVRAGRRTE-----------ISYLLGYACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CCCccHHHHHHHH-----HHHHHhc-cCCCcHHHHHHHcCCcee-----------ehhhhhHHHHHHHHcCCCCchHHHH
Confidence 987431 21110 0001111 122 25678888887764 3357899999999999999999999
Q ss_pred HHHHhc
Q 012596 435 ARIIDN 440 (460)
Q Consensus 435 ~~ll~~ 440 (460)
|++++.
T Consensus 290 ~~~v~~ 295 (305)
T PRK05708 290 QQRLVA 295 (305)
T ss_pred HHHHHH
Confidence 998764
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=219.84 Aligned_cols=270 Identities=14% Similarity=0.177 Sum_probs=192.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
+||+|||+|.||.+||..|+++| ++|++|||++++++.+.+.|. ..+.++.++++++|+||+|+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G--~~V~v~d~~~~~~~~~~~~g~--------------~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG--HQLQVFDVNPQAVDALVDKGA--------------TPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcCC--------------cccCCHHHHHhcCCEEEEec
Confidence 58999999999999999999999 999999999999988877542 23457788889999999999
Q ss_pred chh-cHHHHHH---HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 208 PVQ-FSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 208 p~~-~~~~vl~---~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
|+. .+++++. .+.+.+++++++|++++ +.+.+.+.+.+.+.+. | +.++.+|...........+..++.+
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~lvid~sT-~~p~~~~~l~~~l~~~-g-----~~~ldapV~g~~~~a~~g~l~~~~g 138 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDALVIDMST-IHPLQTDKLIADMQAK-G-----FSMMDVPVGRTSDNAITGTLLLLAG 138 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CcEEEccCCCCHHHHHhCcEEEEEC
Confidence 986 4788874 45667788999999997 5555555555555543 3 2355666654432221223446677
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
++.+.+++++++|+..+-++++.++. |.+..+|+.+|.+......++.|+..++++.|+|++.
T Consensus 139 g~~~~~~~~~p~l~~~g~~~~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~ 201 (296)
T PRK15461 139 GTAEQVERATPILMAMGNELINAGGP-----------------GMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDV 201 (296)
T ss_pred CCHHHHHHHHHHHHHHcCCeEeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 78999999999999988888877764 3334456667777777788899999999999999988
Q ss_pred ccccc--CCC-ceeee-ccc--CCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 364 ITGLS--GTG-DIMLT-CFV--NLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 364 ~~~~~--~~g-d~~~t-~~s--~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
+.++. +.+ ..... ... ...++| ..+++++ ...||+++++++|+++|+++|+.+.+.++
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~f~~~----------~~~KD~~l~~~~a~~~g~~~p~~~~~~~~ 265 (296)
T PRK15461 202 ALKVMSGTAAGKGHFTTTWPNKVLKGDL------SPAFMID----------LAHKDLGIALDVANQLHVPMPLGAASREV 265 (296)
T ss_pred HHHHHhcCcccChHHHccccchhccCCC------CCCcchH----------HHHhhHHHHHHHHHHcCCCChHHHHHHHH
Confidence 77642 111 10000 000 001111 1122222 24599999999999999999999999888
Q ss_pred Hh-------cCCCHHHHHHHHhc
Q 012596 438 ID-------NELTPKKAVLELMS 453 (460)
Q Consensus 438 l~-------~~~~~~~~~~~l~~ 453 (460)
+. ++.+....++.+..
T Consensus 266 ~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 266 YSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHhcCCCCCChHHHHHHHHH
Confidence 84 45666676665544
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=215.04 Aligned_cols=274 Identities=16% Similarity=0.191 Sum_probs=191.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|+||.+||.+|.++| ++|++|+|++. .+.+.+.|. ....++.++++.+|+||+||
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G--~~v~v~~~~~~-~~~~~~~g~--------------~~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG--HQLHVTTIGPV-ADELLSLGA--------------VSVETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--CeEEEEeCCHh-HHHHHHcCC--------------eecCCHHHHHhcCCEEEEeC
Confidence 58999999999999999999999 99999999874 565654442 34457888889999999999
Q ss_pred chh-cHHHHHH---HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 208 PVQ-FSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 208 p~~-~~~~vl~---~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
|.. ++++++. ++.+.+.+++++|++++ +.+++.+.+.+.+.+. |. .++.+|...........+..++.+
T Consensus 64 ~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT-~~p~~~~~~~~~~~~~-G~-----~~vdaPVsGg~~~a~~g~l~~~~g 136 (292)
T PRK15059 64 PDTPQVEEVLFGENGCTKASLKGKTIVDMSS-ISPIETKRFARQVNEL-GG-----DYLDAPVSGGEIGAREGTLSIMVG 136 (292)
T ss_pred CChHHHHHHHcCCcchhccCCCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----CEEEecCCCCHHHHhcCcEEEEEc
Confidence 975 6788773 35666778999999986 7777666666766654 43 245556554443322223345567
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
++.+.+++++++|+..+-++++.++. |.+..+|+.+|.+......++.|++.++++.|+|+++
T Consensus 137 G~~~~~~~~~p~l~~~g~~~~~~G~~-----------------G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~ 199 (292)
T PRK15059 137 GDEAVFERVKPLFELLGKNITLVGGN-----------------GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVR 199 (292)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 78999999999999988777776663 2334455666777777788999999999999999988
Q ss_pred ccccc--CCCc-eeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh-
Q 012596 364 ITGLS--GTGD-IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID- 439 (460)
Q Consensus 364 ~~~~~--~~gd-~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~- 439 (460)
+.++. +.+. .+.....+ +-...+...+++++ ...||+++++++|++.|+++|+.+.+.++++
T Consensus 200 ~~~~l~~~~~~s~~~~~~~~----~~~~~~~~~~f~l~----------~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 265 (292)
T PRK15059 200 VRQALMGGFASSRILEVHGE----RMIKRTFNPGFKIA----------LHQKDLNLALQSAKALALNLPNTATCQELFNT 265 (292)
T ss_pred HHHHHHcCcccCHHHHhhch----hhhcCCCCCCCchH----------HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 87642 1111 01000000 00001111223332 2459999999999999999999999888884
Q ss_pred ------cCCCHHHHHHHHhcCCC
Q 012596 440 ------NELTPKKAVLELMSLPQ 456 (460)
Q Consensus 440 ------~~~~~~~~~~~l~~~~~ 456 (460)
++.+....++.+....+
T Consensus 266 a~~~g~g~~D~sa~~~~~~~~~~ 288 (292)
T PRK15059 266 CAANGGSQLDHSALVQALELMAN 288 (292)
T ss_pred HHhcCCCcCChHHHHHHHHHhcC
Confidence 45566777766655433
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=197.44 Aligned_cols=156 Identities=42% Similarity=0.605 Sum_probs=138.2
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (460)
||+|||+|+||+++|..|+++| ++|++|.|+++.++.+++.+.+..|+++..++.++.+++|++++++++|+|+++||
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 7999999999999999999999 99999999999999999999888999999999999999999999999999999999
Q ss_pred hhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHH
Q 012596 209 VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288 (460)
Q Consensus 209 ~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~ 288 (460)
++..++++++|.+++++++++|.+.+|++.++...+++.+++.++.. .+.+++||+++.|+..+.++.+++++.+.+.
T Consensus 79 s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~~ 156 (157)
T PF01210_consen 79 SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEEV 156 (157)
T ss_dssp GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHHH
T ss_pred HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEeccccc
Confidence 99999999999999999999999999998888889999999998864 3889999999999999999999999887664
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=211.59 Aligned_cols=269 Identities=16% Similarity=0.154 Sum_probs=191.0
Q ss_pred EECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-h
Q 012596 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-Q 210 (460)
Q Consensus 132 IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~ 210 (460)
|||+|.||.+||.+|+++| ++|++|+|++++++.+.+.|. ..++++.++++++|+||+|||. .
T Consensus 1 ~IGlG~mG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~--------------~~~~s~~~~~~~advVil~vp~~~ 64 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG--HPVRVFDLFPDAVEEAVAAGA--------------QAAASPAEAAEGADRVITMLPAGQ 64 (288)
T ss_pred CCcccHhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEEeCCChH
Confidence 6899999999999999999 999999999999988887552 3456788889999999999997 5
Q ss_pred cHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHH
Q 012596 211 FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK 287 (460)
Q Consensus 211 ~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~ 287 (460)
++++++ +++.+.+++++++|+++ ++.+++.+.+.+.+.+. |. .++.+|..+........+..++.+++.+
T Consensus 65 ~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~-g~-----~~vdaPv~Gg~~~a~~g~l~~~~gg~~~ 137 (288)
T TIGR01692 65 HVISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAH-GA-----VFMDAPVSGGVGGARAGTLTFMVGGVAE 137 (288)
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc-CC-----cEEECCCCCCHHHHhhCcEEEEECCCHH
Confidence 688888 67888888899999998 68888777777777653 32 3566666654433323344456667888
Q ss_pred HHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccc
Q 012596 288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367 (460)
Q Consensus 288 ~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~ 367 (460)
.+++++++|+..+-++.+.++.- .+..+|+.+|.+......++.|++.++++.|+|++.+.++
T Consensus 138 ~~~~~~~~l~~~g~~~~~~g~~g-----------------~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~ 200 (288)
T TIGR01692 138 EFAAAEPVLGPMGRNIVHCGDHG-----------------AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEI 200 (288)
T ss_pred HHHHHHHHHHHhcCCeEeeCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999998887777766632 2333555667767777789999999999999999988764
Q ss_pred cC--CCcee-eecccCCCcc---chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh--
Q 012596 368 SG--TGDIM-LTCFVNLSRN---RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID-- 439 (460)
Q Consensus 368 ~~--~gd~~-~t~~s~~srn---~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~-- 439 (460)
.. .+... .....+..+- .....+...++++. ...||++++.++|++.|+++|+.+.+.+++.
T Consensus 201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 270 (288)
T TIGR01692 201 ANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTA----------LMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF 270 (288)
T ss_pred HhcCCccCcHHHHhCCCccccccccccCCCCCCcchH----------HHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 21 11111 0000000000 00000111122222 3459999999999999999999999988884
Q ss_pred -----cCCCHHHHHHH
Q 012596 440 -----NELTPKKAVLE 450 (460)
Q Consensus 440 -----~~~~~~~~~~~ 450 (460)
++.+....++.
T Consensus 271 ~~~g~g~~d~~~~~~~ 286 (288)
T TIGR01692 271 DDKGHGGKDFSSVIQL 286 (288)
T ss_pred HhcCCCCCChHHHHHH
Confidence 34455555543
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=208.97 Aligned_cols=276 Identities=16% Similarity=0.133 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC-CCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHH
Q 012596 137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLGADYCLHAMPVQFSSSF 215 (460)
Q Consensus 137 ~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~-~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~v 215 (460)
+||+.+|..|+++| ++|++|+|+ ++.+.+++.|.......+ ...+ .+.+++++++ ...+|+||+|||++++.++
T Consensus 1 aiG~~~a~~L~~~G--~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~-~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~ 75 (293)
T TIGR00745 1 AVGSLYGAYLARAG--HDVTLLARG-EQLEALNQEGLRIVSLGGEFQFR-PVSAATSPEE-LPPADLVIITVKAYQTEEA 75 (293)
T ss_pred CchHHHHHHHHhCC--CcEEEEecH-HHHHHHHHCCcEEEecCCcEEEc-ccccccChhh-cCCCCEEEEeccchhHHHH
Confidence 58999999999999 999999997 678889888865432211 1111 2345556666 6789999999999999999
Q ss_pred HHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC------CEEEEECcccHHHHhccCCeEEEEccCC--HH
Q 012596 216 LEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ------PFIALSGPSFALELMNKLPTAMVVASKD--RK 287 (460)
Q Consensus 216 l~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~------~~~v~~gP~~a~e~~~g~~~~i~i~~~d--~~ 287 (460)
++.+.+++.++++||.++||++.. +.+.+.++...+ ..+...+|+.......+ .+.++..+ .+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~~------~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~---~~~iG~~~~~~~ 146 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGHE------ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLG---ATKIGDYVGENE 146 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCCH------HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccc---cEEEecCCCchH
Confidence 999999999999999999999875 334444443111 11233455544332222 23455432 25
Q ss_pred HHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 288 ~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~----~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
..+.+.++|+..++++..++|+....|.|++.|+.....+...+..++ +.....++..++.|+.+++++.|+++..
T Consensus 147 ~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~ 226 (293)
T TIGR00745 147 AVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPD 226 (293)
T ss_pred HHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 678899999999999999999999999999999754433333333322 3346789999999999999999988543
Q ss_pred cccccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcC
Q 012596 364 ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNE 441 (460)
Q Consensus 364 ~~~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~ 441 (460)
..-. +.+.........+ .+|-+|+.+|+++| .....|+++++|+++|+++|+++.+|++++..
T Consensus 227 ~~~~----~~~~~~~~~~~~~~sSm~~D~~~gr~tE-----------id~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 227 DEVE----ELVRAVIRMTAENTSSMLQDLLRGRRTE-----------IDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred HHHH----HHHHHHHhcCCCCCChHHHHHHcCCcch-----------HHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 2100 0010111111223 25668888777664 33678999999999999999999999998754
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=205.41 Aligned_cols=275 Identities=17% Similarity=0.203 Sum_probs=188.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+|||+|||+|.||..+|..|++.| ++|++|+|++++.+.+.+.|. ..++++++++++||+||+|
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~~g~--------------~~~~~~~e~~~~~d~vi~~ 65 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG--YSLVVYDRNPEAVAEVIAAGA--------------ETASTAKAVAEQCDVIITM 65 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCCC--------------eecCCHHHHHhcCCEEEEe
Confidence 479999999999999999999999 899999999988887776542 3455788888999999999
Q ss_pred cch-hcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp~-~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
+|. ..++.++ +++.+.+++++++|++++ +.+.+.+.+.+.+.+. | ..++.+|.++...........++.
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st-~~~~~~~~l~~~~~~~-g-----~~~~d~pv~g~~~~a~~g~l~i~~ 138 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPGTVVIDMSS-IAPLASREIAAALKAK-G-----IEMLDAPVSGGEPKAIDGTLSVMV 138 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCCcEEEECCC-CCHHHHHHHHHHHHHc-C-----CcEEEcCCCCCHHHHhhCcEEEEE
Confidence 995 4567776 457777888999999886 5555444555555442 2 235666655433221122223444
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
+++.+.+++++++|+..+.++.+.++...... +|+.+|.+......+++|+..++++.|++++
T Consensus 139 gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~-----------------~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~ 201 (296)
T PRK11559 139 GGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNV-----------------TKLANQVIVALNIAAMSEALVLATKAGVNPD 201 (296)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 56788999999999998877776655322222 3445566666677899999999999999998
Q ss_pred cccccc--CCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh-
Q 012596 363 TITGLS--GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID- 439 (460)
Q Consensus 363 ~~~~~~--~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~- 439 (460)
++.+.. +.+... ..... ..+.+..+...|++.+. ..||+++++++|+++|+++|+.+.+++++.
T Consensus 202 ~~~~~l~~~~~~s~--~~~~~-~~~~~~~d~~~~f~~~~----------~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK11559 202 LVYQAIRGGLAGST--VLDAK-APMVMDRNFKPGFRIDL----------HIKDLANALDTSHGVGAPLPLTAAVMEMMQA 268 (296)
T ss_pred HHHHHHhcCcccCH--HHHhh-chHhhcCCCCCCcchHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 776532 111100 00000 00001112223344432 248999999999999999999999998883
Q ss_pred ------cCCCHHHHHHHHhcC
Q 012596 440 ------NELTPKKAVLELMSL 454 (460)
Q Consensus 440 ------~~~~~~~~~~~l~~~ 454 (460)
++.+....++.+..+
T Consensus 269 ~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 269 LKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHhcCCCcCCcHHHHHHHHHh
Confidence 566777777766544
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=210.79 Aligned_cols=282 Identities=21% Similarity=0.199 Sum_probs=201.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~~a 200 (460)
|||+|||+|.||..+|..|+++| ++|++||+++++++.+++ |..+.+.++.. + ..++.+++++.++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~a 77 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQEKVDKLNK-GKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDA 77 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHHHHHHhhc-CCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhC
Confidence 68999999999999999999999 999999999999998875 43333434322 1 12367778888888999
Q ss_pred cEEEEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHH-HHHHHHhCCC-CCCEEEEECcccH
Q 012596 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS-QIIPQALRNP-RQPFIALSGPSFA 268 (460)
Q Consensus 201 DiVilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~-e~l~~~lg~~-~~~~~v~~gP~~a 268 (460)
|+||+|||+. .+.++++++.+.+++++++|.++ ++.+.+.+.+. +.+++..|.. ...+.+.++|.++
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~ 156 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL 156 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC
Confidence 9999999965 37777888988888999998877 58888766664 4444422321 2456789999887
Q ss_pred HHHhc----cCCeEEEEccCCHHHHHHHHHHHhcCC-ceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 012596 269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV 343 (460)
Q Consensus 269 ~e~~~----g~~~~i~i~~~d~~~~~~l~~lL~~~g-~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~ 343 (460)
.+... ..+..++++ .+.+..++++++|+..+ ..++...++...+..|++.| .+.+..
T Consensus 157 ~~G~~~~~~~~~~~iv~G-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N-----------------~~~a~~ 218 (411)
T TIGR03026 157 REGNAVHDLLNPDRIVGG-ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAEN-----------------TFRAVK 218 (411)
T ss_pred CCCChhhhhcCCCEEEEe-CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHH-----------------HHHHHH
Confidence 64321 223344444 78899999999999876 45666777777666666555 445566
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHH
Q 012596 344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423 (460)
Q Consensus 344 ~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~ 423 (460)
..+++|+..+|+++|+|++++.+..+....+ ..+.+.+|+.++ |.. ..||+++++++|++
T Consensus 219 ia~~nE~~~la~~~GiD~~~v~~~~~~~~~i------~~~~~~pg~g~g-g~c-------------~~KD~~~l~~~a~~ 278 (411)
T TIGR03026 219 IAFANELARICEALGIDVYEVIEAAGTDPRI------GFNFLNPGPGVG-GHC-------------IPKDPLALIYKAKE 278 (411)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCCCC------CCCcCCCCCCCC-CCc-------------hhhhHHHHHHHHHh
Confidence 7889999999999999999888764432211 012222222111 111 23899999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCHHHHHHHHhc
Q 012596 424 YNVKMPVLTAVARIIDNELTPKKAVLELMS 453 (460)
Q Consensus 424 ~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~ 453 (460)
+|+++|+.+++.++ ++..+..+++.+..
T Consensus 279 ~g~~~~l~~~~~~~--N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 279 LGYNPELIEAAREI--NDSQPDYVVEKILD 306 (411)
T ss_pred cCCCcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 99999999999987 44555555555443
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=202.33 Aligned_cols=269 Identities=17% Similarity=0.205 Sum_probs=188.1
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (460)
||+|||+|.||..||..|+++| ++|++|+|++++++.+.+.|. ..++++.+++++||+||+|+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~--------------~~~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG--YQLHVTTIGPEVADELLAAGA--------------VTAETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCCC--------------cccCCHHHHHhcCCEEEEecC
Confidence 6999999999999999999999 999999999998888877553 223467788899999999999
Q ss_pred hh-cHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 209 VQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 209 ~~-~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
.. .++.++ +++.+.+++++++|++++ +.+.+.+.+.+.+.+. | ..++.+|.++.+.........++.++
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~g~iivd~st-~~~~~~~~l~~~l~~~-g-----~~~~~~pv~g~~~~a~~g~l~i~~gg 137 (291)
T TIGR01505 65 DSPQVEEVAFGENGIIEGAKPGKTLVDMSS-ISPIESKRFAKAVKEK-G-----IDYLDAPVSGGEIGAIEGTLSIMVGG 137 (291)
T ss_pred CHHHHHHHHcCcchHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CCEEecCCCCCHHHHhcCCEEEEecC
Confidence 75 566665 346667788999999886 4555444555555543 2 23556676654432222223355556
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 012596 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~ 364 (460)
+.+.+++++++|+..+.++.+.++... +..+|+.+|.+......+++|+..++++.|++++++
T Consensus 138 ~~~~~~~~~~ll~~lg~~~~~~g~~g~-----------------a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~ 200 (291)
T TIGR01505 138 DQAVFDRVKPLFEALGKNIVLVGGNGD-----------------GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRV 200 (291)
T ss_pred CHHHHHHHHHHHHHhcCCeEEeCCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 789999999999998877776655322 223345566677777889999999999999999888
Q ss_pred cccc--CCCcee-ee--cccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 365 TGLS--GTGDIM-LT--CFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 365 ~~~~--~~gd~~-~t--~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
.+.. +.+... .. +....+++| ..++++. ...||++++.+++++.|+++|+.+.+.++++
T Consensus 201 ~~~l~~~~~~s~~~~~~~~~~~~~~~------~~~f~~~----------~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~ 264 (291)
T TIGR01505 201 RQALRGGLAGSTVLEVKGERVIDRTF------KPGFRID----------LHQKDLNLALDSAKAVGANLPNTATVQELFN 264 (291)
T ss_pred HHHHhcCcccCHHHHhhChhhhcCCC------CCCcchH----------HHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Confidence 7642 111100 00 000111121 1223332 2348999999999999999999999988885
Q ss_pred -------cCCCHHHHHHHHhc
Q 012596 440 -------NELTPKKAVLELMS 453 (460)
Q Consensus 440 -------~~~~~~~~~~~l~~ 453 (460)
+++|....++.+..
T Consensus 265 ~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 265 TLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred HHHhcCCCccChHHHHHHHHH
Confidence 46777777776644
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-24 Score=188.59 Aligned_cols=145 Identities=48% Similarity=0.776 Sum_probs=132.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc-ccccccCCCceeeecccCCCccc
Q 012596 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA-TITGLSGTGDIMLTCFVNLSRNR 385 (460)
Q Consensus 307 ~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~-~~~~~~~~gd~~~t~~s~~srn~ 385 (460)
+|+.|+|+++++||++|+++|+.+++.++.|...+++.++++||..+++++|.+++ ++++++|+||+++||++..+||+
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~ 80 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNR 80 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcH
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHhhCC-CChHHHHhhc--ccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHHHHHHH
Q 012596 386 TVGVRLGSG-EKLDDILSSM--NQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLEL 451 (460)
Q Consensus 386 ~~g~~l~~g-~~~e~~~~~~--~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l 451 (460)
++|..+.+| ++.+++.+.+ ++++||...++.+.++++++++++|+.+++|+++.++.+|+++++.|
T Consensus 81 ~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~~~~~~~~i~~l 149 (149)
T PF07479_consen 81 RFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYENESPEEAIEEL 149 (149)
T ss_dssp HHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcCcCCHHHHHHcC
Confidence 999999999 8999888888 89999999999999999999999999999999999999999999875
|
1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B .... |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=212.06 Aligned_cols=268 Identities=12% Similarity=0.083 Sum_probs=185.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiV 203 (460)
+++|||||+|.||..||.+|+++| ++|++|||++++++.+.+.+... +. ..+..+++++++++. +|+|
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G--~~V~V~NRt~~k~~~l~~~~~~~----Ga---~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE----GN---LPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhhhc----CC---cccccCCCHHHHHhcCCCCCEE
Confidence 578999999999999999999999 99999999999999887641100 00 012345678887765 9999
Q ss_pred EEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 204 LHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 204 ilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|+|||.. ++++|++++.+.+.+|+++|+++| ..+.+.+...+.+.+. | +.++..|..+.+........ ++.
T Consensus 77 i~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~-G-----i~fldapVSGG~~gA~~G~~-im~ 148 (493)
T PLN02350 77 IILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEK-G-----LLYLGMGVSGGEEGARNGPS-LMP 148 (493)
T ss_pred EEECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CeEEeCCCcCCHHHhcCCCe-EEe
Confidence 9999964 689999999999999999999998 4444444555555543 3 34666666655433222233 566
Q ss_pred cCCHHHHHHHHHHHhcCCce------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH
Q 012596 283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK 356 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a 356 (460)
|++.+.+++++++|+..+-+ +.+.++. |.+..+|+.+|.+.....+++.|++.++++
T Consensus 149 GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~-----------------GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~ 211 (493)
T PLN02350 149 GGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPG-----------------GAGNFVKMVHNGIEYGDMQLISEAYDVLKS 211 (493)
T ss_pred cCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999987643 5555553 344556677788888889999999999998
Q ss_pred -cCCCcccccccc---CCCceeeecccCCCccchHHHHhh-C-----CCChHHHHhhcccceehhhhHH------HHHHH
Q 012596 357 -MGAKPATITGLS---GTGDIMLTCFVNLSRNRTVGVRLG-S-----GEKLDDILSSMNQVAEGVSTAG------AVIAL 420 (460)
Q Consensus 357 -~Gi~~~~~~~~~---~~gd~~~t~~s~~srn~~~g~~l~-~-----g~~~e~~~~~~~~~~eg~kd~g------~vv~l 420 (460)
.|++++.+.++. .-+.. .+..... .+..+. + ++.++. ..||++ ..+..
T Consensus 212 ~~Gld~~~l~~vf~~~~~g~~----~S~llei--~~~~l~~~d~~~~~f~l~~----------i~Kd~~~kGTg~w~~~~ 275 (493)
T PLN02350 212 VGGLSNEELAEVFAEWNKGEL----ESFLIEI--TADIFSVKDDKGDGYLVDK----------ILDKTGMKGTGKWTVQQ 275 (493)
T ss_pred hCCCCHHHHHHHHHHHcCCCc----cchHHHH--HHHHHhhcCCCCCCchHHH----------HHhhhcccchHHHHHHH
Confidence 599988876641 00100 0000000 011111 1 122222 347777 89999
Q ss_pred HHHcCCCChH-HHHHHHHHhcCCCH
Q 012596 421 AQKYNVKMPV-LTAVARIIDNELTP 444 (460)
Q Consensus 421 A~~~gv~~P~-~~~v~~ll~~~~~~ 444 (460)
|.++|+++|+ .+++.+.+......
T Consensus 276 A~~lgv~~p~i~~av~~r~~s~~k~ 300 (493)
T PLN02350 276 AAELSVAAPTIAASLDARYLSGLKE 300 (493)
T ss_pred HHHhCCCccHHHHHHHHHHHhccHH
Confidence 9999999999 77777776554443
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=198.82 Aligned_cols=259 Identities=12% Similarity=0.064 Sum_probs=181.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVi 204 (460)
|||+|||+|.||..||.+|.++| ++|++|||++++++.+.+.|. ..++++++++++ +|+||
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g~--------------~~~~s~~~~~~~~~~advVi 64 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG--HEVVGYDVNQEAVDVAGKLGI--------------TARHSLEELVSKLEAPRTIW 64 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHCCC--------------eecCCHHHHHHhCCCCCEEE
Confidence 58999999999999999999999 899999999998888876542 345577777655 69999
Q ss_pred Eccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 205 laVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
+|+|.. .++++++++.+.+++++++|++++ ..+.+.+.+.+.+.+. | +.++.+|..+......... .++.+
T Consensus 65 ~~vp~~~~~~~v~~~i~~~l~~g~ivid~st-~~~~~~~~~~~~~~~~-g-----~~~vdapV~G~~~~a~~g~-~~~~g 136 (299)
T PRK12490 65 VMVPAGEVTESVIKDLYPLLSPGDIVVDGGN-SRYKDDLRRAEELAER-G-----IHYVDCGTSGGVWGLRNGY-CLMVG 136 (299)
T ss_pred EEecCchHHHHHHHHHhccCCCCCEEEECCC-CCchhHHHHHHHHHHc-C-----CeEEeCCCCCCHHHHhcCC-eEEec
Confidence 999987 789999999888888999999986 5554444555555432 3 3466777665533222223 35566
Q ss_pred CCHHHHHHHHHHHhcCCc---eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcC--
Q 012596 284 KDRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG-- 358 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~---~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~G-- 358 (460)
++.+.+++++++|+..+- ++++.++. |.+..+|+.+|.+......++.|++.++++.|
T Consensus 137 G~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ 199 (299)
T PRK12490 137 GDKEIYDRLEPVFKALAPEGPGYVHAGPV-----------------GSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFD 199 (299)
T ss_pred CCHHHHHHHHHHHHHhcCcCCcEEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 788999999999998875 56666653 34455566778888888999999999999999
Q ss_pred CCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhH---HHHHHHHHHcCCCChHHHHHH
Q 012596 359 AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTA---GAVIALAQKYNVKMPVLTAVA 435 (460)
Q Consensus 359 i~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~---g~vv~lA~~~gv~~P~~~~v~ 435 (460)
+|++.++++...+... .+..... ....+..+.... ......||. ++++++|++.|+++|+...+.
T Consensus 200 ld~~~~~~~~~~~~~~---~s~~l~~--~~~~~~~~~~~~-------~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~ 267 (299)
T PRK12490 200 FDVEDVARLWRNGSVI---RSWLLDL--TVKALAEDPKLA-------GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASL 267 (299)
T ss_pred CCHHHHHHHHcCCcHH---HHHHHHH--HHHHHhhCCChh-------hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 9988887642110000 0000000 112222221110 012234676 799999999999999999884
Q ss_pred -HHHh
Q 012596 436 -RIID 439 (460)
Q Consensus 436 -~ll~ 439 (460)
.++.
T Consensus 268 ~~~~~ 272 (299)
T PRK12490 268 FMRFA 272 (299)
T ss_pred HHHHH
Confidence 5443
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=232.80 Aligned_cols=271 Identities=14% Similarity=0.129 Sum_probs=201.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
...||||||+|.||..||.+|.++| ++|++|||++++++++.+.|. ..++++.+++++||+||+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G--~~v~v~dr~~~~~~~l~~~Ga--------------~~~~s~~e~a~~advVi~ 66 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSG--FKVQAFEISTPLMEKFCELGG--------------HRCDSPAEAAKDAAALVV 66 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEE
Confidence 3578999999999999999999999 999999999999999988653 456789999999999999
Q ss_pred ccch-hcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 206 AMPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 206 aVp~-~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+|. .++++++ +++.+.+++|+++|++++ +.+++.+.+.+.+.+. |. .+.++.+|.++...........++
T Consensus 67 ~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~ST-i~p~~~~~la~~l~~~-g~---~~~~lDaPVsGg~~~A~~G~L~im 141 (1378)
T PLN02858 67 VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRST-ILPLQLQKLEKKLTER-KE---QIFLVDAYVSKGMSDLLNGKLMII 141 (1378)
T ss_pred EcCChHHHHHHHhchhhHHhcCCCcCEEEECCC-CCHHHHHHHHHHHHhc-CC---ceEEEEccCcCCHHHHhcCCeEEE
Confidence 9996 4678887 467777888999999986 8887766777776654 31 144677776655433323344567
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEE-cCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 282 ASKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
.|++.+.+++++++|+.++-++++ .++. |.+..+|+.+|.+......++.|++.+|++.|++
T Consensus 142 vGG~~~~~~~~~p~l~~~g~~i~~~~G~~-----------------G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld 204 (1378)
T PLN02858 142 ASGRSDAITRAQPFLSAMCQKLYTFEGEI-----------------GAGSKVKMVNELLEGIHLVASAEAMALGVRAGIH 204 (1378)
T ss_pred EcCCHHHHHHHHHHHHHhcCceEEecCCC-----------------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 778899999999999998877764 3553 3445566777888888889999999999999999
Q ss_pred cccccccc--CCCceeeecccCCCccchHHHHhhC-----CCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHH
Q 012596 361 PATITGLS--GTGDIMLTCFVNLSRNRTVGVRLGS-----GEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA 433 (460)
Q Consensus 361 ~~~~~~~~--~~gd~~~t~~s~~srn~~~g~~l~~-----g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~ 433 (460)
++.++++. +.+... ...++ ...+.. +++++ ...||+++++++|++.|+++|+.+.
T Consensus 205 ~~~l~~vl~~s~g~s~------~~~~~--~~~~~~~d~~~~F~l~----------l~~KDl~la~~~A~~~g~~lpl~~~ 266 (1378)
T PLN02858 205 PWIIYDIISNAAGSSW------IFKNH--VPLLLKDDYIEGRFLN----------VLVQNLGIVLDMAKSLPFPLPLLAV 266 (1378)
T ss_pred HHHHHHHHhcCCccCH------HHHhh--hhHhhcCCCCCCchhH----------HHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99888752 222111 00111 112211 22332 2459999999999999999999999
Q ss_pred HHHHHh-------cCCCHHHHHHHHh
Q 012596 434 VARIID-------NELTPKKAVLELM 452 (460)
Q Consensus 434 v~~ll~-------~~~~~~~~~~~l~ 452 (460)
+.+++. ++.+....++.+.
T Consensus 267 a~~~~~~a~~~G~g~~D~sav~~~~~ 292 (1378)
T PLN02858 267 AHQQLISGSSSMQGDDTATSLAKVWE 292 (1378)
T ss_pred HHHHHHHHHhcCCCccChHHHHHHHH
Confidence 998884 3555666655443
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=191.26 Aligned_cols=274 Identities=14% Similarity=0.122 Sum_probs=182.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVi 204 (460)
|||+|||+|.||.+||.+|+++| ++|++|||++++++.+.+.|. ..+++++++++. +|+||
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g~--------------~~~~~~~e~~~~~~~~dvvi 64 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG--HEVVGYDRNPEAVEALAEEGA--------------TGADSLEELVAKLPAPRVVW 64 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCCC--------------eecCCHHHHHhhcCCCCEEE
Confidence 58999999999999999999999 999999999999988876542 345577776664 69999
Q ss_pred Eccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 205 laVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
+++|.. .++++++++.+.+++++++|+++++. +.+.+.+.+.+.+. | +.++..|..+......... .++.+
T Consensus 65 ~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~-g-----~~~~dapvsG~~~~a~~g~-~~~~g 136 (301)
T PRK09599 65 LMVPAGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEK-G-----IHFVDVGTSGGVWGLERGY-CLMIG 136 (301)
T ss_pred EEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHc-C-----CEEEeCCCCcCHHHHhcCC-eEEec
Confidence 999987 78999999988898999999998744 43334455555443 3 3455666665432221223 34556
Q ss_pred CCHHHHHHHHHHHhcCCc----eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH--c
Q 012596 284 KDRKLANAVQQLLASKHL----RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK--M 357 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~----~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a--~ 357 (460)
++.+.+++++++|+..+- ++.+.++. |.+..+|+.+|.+......++.|++.++++ .
T Consensus 137 G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~-----------------G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~ 199 (301)
T PRK09599 137 GDKEAVERLEPIFKALAPRAEDGYLHAGPV-----------------GAGHFVKMVHNGIEYGMMQAYAEGFELLEASRF 199 (301)
T ss_pred CCHHHHHHHHHHHHHHcccccCCeEeECCC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 789999999999998876 66766664 233344555666777778899999999999 9
Q ss_pred CCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHH-HHH
Q 012596 358 GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA-VAR 436 (460)
Q Consensus 358 Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~-v~~ 436 (460)
|+|++++.+....+... .+..... ....+.+......+.. .+.-.+|.+.++..|.+.|+++|.+.. ++.
T Consensus 200 gld~~~~~~~~~~~~~~---~s~~l~~--~~~~~~~~~~~~~~~~----~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~ 270 (301)
T PRK09599 200 DLDLAAVAEVWRRGSVI---RSWLLDL--TADALAEDPKLDEISG----YVEDSGEGRWTVEEAIDLAVPAPVIAAALFM 270 (301)
T ss_pred CCCHHHHHHHHhCCcHH---HHHHHHH--HHHHHhcCCCHHHHHH----HHHhhCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99998887642111000 0000000 1122222111111100 011134568999999999999999998 444
Q ss_pred HHh---cCCCHHHHHHHH
Q 012596 437 IID---NELTPKKAVLEL 451 (460)
Q Consensus 437 ll~---~~~~~~~~~~~l 451 (460)
.+. ....+...++.+
T Consensus 271 ~~~~~~~~~~~~~~~~a~ 288 (301)
T PRK09599 271 RFRSRQEDSFADKVVAAL 288 (301)
T ss_pred HHHhccCCCcHHHHHHHH
Confidence 332 333344444433
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=223.72 Aligned_cols=273 Identities=13% Similarity=0.136 Sum_probs=196.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+++|||||+|+||.+||.+|+++| ++|++|||++++++.+.+.|. ...+++.++++.||+||+|
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~Ga--------------~~~~s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSN--FSVCGYDVYKPTLVRFENAGG--------------LAGNSPAEVAKDVDVLVIM 387 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEEe
Confidence 479999999999999999999999 999999999999888877652 2345788888999999999
Q ss_pred cc-hhcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MP-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp-~~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|| +.++++++ .++.+.+++++++|++++ +.|++.+.+.+.+.+. + ..+.++.+|..+........+..++.
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ST-vsP~~~~~la~~l~~~-g---~g~~~lDAPVsGg~~~A~~G~L~imv 462 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGASIVLSST-VSPGFVIQLERRLENE-G---RDIKLVDAPVSGGVKRAAMGTLTIMA 462 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCCEEEECCC-CCHHHHHHHHHHHHhh-C---CCcEEEEccCCCChhhhhcCCceEEE
Confidence 99 56688887 346677788999999986 7777666666666652 1 13456777766554333333344566
Q ss_pred cCCHHHHHHHHHHHhcCCceEEE-cCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 283 SKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
+++.+.+++++++|+..+-++++ .++. |.+..+|+.+|.+......++.|++.++++.|+|+
T Consensus 463 gG~~~~~~~~~plL~~lg~~i~~~~g~~-----------------G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~ 525 (1378)
T PLN02858 463 SGTDEALKSAGSVLSALSEKLYVIKGGC-----------------GAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNT 525 (1378)
T ss_pred ECCHHHHHHHHHHHHHHhCcEEEeCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 67889999999999988877765 4554 33444556677777777899999999999999999
Q ss_pred ccccccc--CCCce-eeeccc--CCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHH
Q 012596 362 ATITGLS--GTGDI-MLTCFV--NLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR 436 (460)
Q Consensus 362 ~~~~~~~--~~gd~-~~t~~s--~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ 436 (460)
++++++. +.+.. +..... ...++| ..+++++ ...||+++++++|++.|+++|+.+.+.+
T Consensus 526 ~~l~evl~~s~g~s~~~~~~~~~~l~~d~------~~~f~l~----------l~~KDl~l~~~~a~~~g~~~pl~~~~~~ 589 (1378)
T PLN02858 526 RKLFDIISNAGGTSWMFENRVPHMLDNDY------TPYSALD----------IFVKDLGIVSREGSSRKIPLHLSTVAHQ 589 (1378)
T ss_pred HHHHHHHHhhcccChhhhhccchhhcCCC------CCCchhH----------HHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 9887742 21211 100000 001111 1122222 2459999999999999999999999888
Q ss_pred HHh-------cCCCHHHHHHHHhc
Q 012596 437 IID-------NELTPKKAVLELMS 453 (460)
Q Consensus 437 ll~-------~~~~~~~~~~~l~~ 453 (460)
++. ++.+....++.+..
T Consensus 590 ~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 590 LFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHhcCCCccChHHHHHHHHH
Confidence 884 45566666665543
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=181.35 Aligned_cols=276 Identities=21% Similarity=0.245 Sum_probs=209.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~a 200 (460)
|||+|||.|.+|...|..|++.| |+|+.+|.++++++.+++ |..+.|.|++. ...++.+++|.+++++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~-g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNK-GISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhC-CCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcC
Confidence 79999999999999999999999 999999999999999987 66677877763 123489999999999999
Q ss_pred cEEEEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012596 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE 270 (460)
Q Consensus 201 DiVilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e 270 (460)
|++|+||++. .++.+++.|.+.++..++||.=++ +.+.+.+.+.+.+.+..... .+.+.+.|.|.+|
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST-VPvGt~~~v~~~i~~~~~~~--~f~v~~NPEFLRE 154 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST-VPVGTTEEVRAKIREENSGK--DFEVASNPEFLRE 154 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC-CCCCchHHHHHHHHhhcccC--CceEecChHHhcC
Confidence 9999999852 467788899999987666666554 88888777777776654332 5678999999886
Q ss_pred Hhc----cCCeEEEEccCCHHHHHHHHHHHhcC---CceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 012596 271 LMN----KLPTAMVVASKDRKLANAVQQLLASK---HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV 343 (460)
Q Consensus 271 ~~~----g~~~~i~i~~~d~~~~~~l~~lL~~~---g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~ 343 (460)
..+ -.|..+++|..+....+.+++++... ..++..++ +...|+ .||..|.+.+.-
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~-~~~AE~-----------------IKyaaNafLAtK 216 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTD-LREAEL-----------------IKYAANAFLATK 216 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEec-chHHHH-----------------HHHHHHHHHHHH
Confidence 421 25677889887777788888888653 45555443 344443 456667788888
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHh-----hC-CCChHHHHhhcccceehhhhHHHH
Q 012596 344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRL-----GS-GEKLDDILSSMNQVAEGVSTAGAV 417 (460)
Q Consensus 344 ~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l-----~~-g~~~e~~~~~~~~~~eg~kd~g~v 417 (460)
...++|+..+|++.|+|..++.+-.|+ +.+.|..+ +. |.+. .||++++
T Consensus 217 IsFiNEia~ice~~g~D~~~V~~gIGl-------------D~RIG~~fl~aG~GyGGsCf-------------PKD~~AL 270 (414)
T COG1004 217 ISFINEIANICEKVGADVKQVAEGIGL-------------DPRIGNHFLNAGFGYGGSCF-------------PKDTKAL 270 (414)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCC-------------CchhhHhhCCCCCCCCCcCC-------------cHhHHHH
Confidence 899999999999999998777653332 12233222 11 2333 3899999
Q ss_pred HHHHHHcCCCChHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 012596 418 IALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLP 455 (460)
Q Consensus 418 v~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~~ 455 (460)
++.|+++|.+.++++++.+. ++.+++.+++.+.++-
T Consensus 271 ~~~a~~~~~~~~ll~avv~v--N~~qk~~~~~~i~~~~ 306 (414)
T COG1004 271 IANAEELGYDPNLLEAVVEV--NERRKDKLAEKILNHL 306 (414)
T ss_pred HHHHHhcCCchHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 99999999999999999886 5666777777666553
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=179.73 Aligned_cols=275 Identities=10% Similarity=0.068 Sum_probs=177.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh---hcCCCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e---a~~~aDiVi 204 (460)
|||+|||+|.||..||.+|+++| ++|++|||++++++.+.+.|.. ...++++ .+..+|+||
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g--~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~~~~~~~~~~dvIi 64 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG--HDCVGYDHDQDAVKAMKEDRTT--------------GVANLRELSQRLSAPRVVW 64 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCc--------------ccCCHHHHHhhcCCCCEEE
Confidence 58999999999999999999999 9999999999999988876532 1123433 346789999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
+|||+..++++++++.+.++++++||+++++...++ ....+.+.+. | +.++..|..+......... .++.++
T Consensus 65 ~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~t-~~~~~~~~~~-g-----~~~vda~vsGg~~~a~~G~-~~~~gG 136 (298)
T TIGR00872 65 VMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDS-LRRYKLLKEK-G-----IHLLDCGTSGGVWGRERGY-CFMIGG 136 (298)
T ss_pred EEcCchHHHHHHHHHHhhCCCCCEEEECCCCCcccH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCC-eeeeCC
Confidence 999999999999999999999999999998665543 2333333332 3 2355555554332221222 345566
Q ss_pred CHHHHHHHHHHHhcCCc---eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcC--C
Q 012596 285 DRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG--A 359 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~---~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~G--i 359 (460)
+.+.+++++++|+..+- .+.+.++. |....+|+.+|.+......++.|+..++++.| +
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~l 199 (298)
T TIGR00872 137 DGEAFARAEPLFADVAPEEQGYLYCGPC-----------------GSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDF 199 (298)
T ss_pred CHHHHHHHHHHHHHhcCcCCCEEEECCc-----------------cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 89999999999997664 35555553 22233444556666777889999999999984 6
Q ss_pred CccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHH--H
Q 012596 360 KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR--I 437 (460)
Q Consensus 360 ~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~--l 437 (460)
|++++.++-..+..+ .+..... ....+.++..++.+... +...++.+.++..|.+.|+++|.+..... .
T Consensus 200 d~~~~~~i~~~g~~~---~s~~l~~--~~~~~~~~~~~~~~~~~----~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~ 270 (298)
T TIGR00872 200 DIPEVARVWRRGSVI---RSWLLDL--TAIAFRESPDLAEFSGR----VSDSGEGRWTVIAAIDLGVPAPVIATSLQSRF 270 (298)
T ss_pred CHHHHHHHHcCCchh---HhHHHHH--HHHHHhcCCcHHHHHHH----HHhhccHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 887776541111100 0000000 01112222222222211 11234568899999999999999977332 1
Q ss_pred H-hcC-CCHHHHHHHHh
Q 012596 438 I-DNE-LTPKKAVLELM 452 (460)
Q Consensus 438 l-~~~-~~~~~~~~~l~ 452 (460)
. ... ..|..+++.++
T Consensus 271 ~~~~~~~~~~~~~~~~r 287 (298)
T TIGR00872 271 ASRDLDDFANKVLAALR 287 (298)
T ss_pred HhCCCCCcHHHHHHHHH
Confidence 1 222 34666666554
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=190.31 Aligned_cols=206 Identities=12% Similarity=0.086 Sum_probs=153.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC---CCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~---~aDiV 203 (460)
|++|||||+|.||+.||.+|+++| ++|++|||++++++.+.+.+.+..+ .+..+++++++++ ++|+|
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~--------~i~~~~s~~e~v~~l~~~d~I 70 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRG--FKISVYNRTYEKTEEFVKKAKEGNT--------RVKGYHTLEELVNSLKKPRKV 70 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhhhhcCC--------cceecCCHHHHHhcCCCCCEE
Confidence 468999999999999999999999 9999999999999988765321110 2345678888775 58999
Q ss_pred EEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 204 ilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|++|++ ..++++++++.++++++++||+++|+...++.+.. +.+.+. | +.++..|..+.+.+...... ++.
T Consensus 71 il~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~-G-----i~fldapVSGG~~gA~~G~~-lm~ 142 (470)
T PTZ00142 71 ILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEK-G-----ILYLGMGVSGGEEGARYGPS-LMP 142 (470)
T ss_pred EEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHc-C-----CeEEcCCCCCCHHHHhcCCE-EEE
Confidence 999775 67899999999999999999999998776654333 333332 3 34666666655433222233 555
Q ss_pred cCCHHHHHHHHHHHhcCCce------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-
Q 012596 283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT- 355 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~- 355 (460)
|++.+.+++++++|+..+-+ +.+.++. |.+.-+|+.+|.+.....+++.|++.+++
T Consensus 143 GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~-----------------GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~ 205 (470)
T PTZ00142 143 GGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPG-----------------SSGHYVKMVHNGIEYGDMQLISESYKLMKH 205 (470)
T ss_pred eCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCC-----------------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 66899999999999987655 4554542 34444566677778888899999999998
Q ss_pred HcCCCccccccc
Q 012596 356 KMGAKPATITGL 367 (460)
Q Consensus 356 a~Gi~~~~~~~~ 367 (460)
+.|++++++.++
T Consensus 206 ~~gl~~~~l~~v 217 (470)
T PTZ00142 206 ILGMSNEELSEV 217 (470)
T ss_pred hcCCCHHHHHHH
Confidence 799998877654
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-19 Score=184.55 Aligned_cols=277 Identities=10% Similarity=0.072 Sum_probs=188.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-C--CCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L--PENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-l--~~~i~a~~~~~ea~~~aDiV 203 (460)
.|||+|||+|.||..||..|++ | ++|++||+++++++.++ .|..+.+.++.. + ...+.++++.+ ++++||++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~--~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~-~~~~advv 80 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S--RQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIE-KIKECNFY 80 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C--CEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHH-HHcCCCEE
Confidence 5899999999999999999987 6 89999999999999998 554433322211 0 12355666665 57899999
Q ss_pred EEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhh-HHHHHHHHhCCC-CCCEEEEECcccHHHH
Q 012596 204 LHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRM-MSQIIPQALRNP-RQPFIALSGPSFALEL 271 (460)
Q Consensus 204 ilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~-l~e~l~~~lg~~-~~~~~v~~gP~~a~e~ 271 (460)
|+|||.. .+....++|.+.+++++++|..++ +.+.+.+. +...+.+..|.. ...+.+.+.|.+..+.
T Consensus 81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST-v~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G 159 (425)
T PRK15182 81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST-VYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPG 159 (425)
T ss_pred EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC-CCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCC
Confidence 9999954 344445678899999999998886 88876653 344444422321 1234455667665432
Q ss_pred h----ccCCeEEEEccCCHHHHHHHHHHHhcCC-ceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHH
Q 012596 272 M----NKLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346 (460)
Q Consensus 272 ~----~g~~~~i~i~~~d~~~~~~l~~lL~~~g-~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~ 346 (460)
. .+.+.. +++|.+.+..+.++++++... .......+.... +..|+.+|.+.++..++
T Consensus 160 ~a~~~~~~~~r-iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~A-----------------E~~Kl~~N~~~av~Ia~ 221 (425)
T PRK15182 160 DKKHRLTNIKK-ITSGSTAQIAELIDEVYQQIISAGTYKAESIKVA-----------------EAAKVIENTQRDLNIAL 221 (425)
T ss_pred cccccccCCCe-EEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 1 123333 455567788888999988643 123334444333 44456667788889999
Q ss_pred HHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCC
Q 012596 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426 (460)
Q Consensus 347 ~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv 426 (460)
++|+..+|++.|+|.+.+.+.++... ....+.+|. + .|.++. ||..+++..++++|+
T Consensus 222 ~NE~a~lae~~GiD~~~v~~a~~~~~--------~~~~~~pG~-v-GG~Clp-------------kD~~~L~~~a~~~g~ 278 (425)
T PRK15182 222 VNELAIIFNRLNIDTEAVLRAAGSKW--------NFLPFRPGL-V-GGHCIG-------------VDPYYLTHKSQGIGY 278 (425)
T ss_pred HHHHHHHHHHhCcCHHHHHHHhcCCC--------CcccCCCCc-c-cccccc-------------ccHHHHHHHHHhcCC
Confidence 99999999999999988876533211 011123344 3 244442 788899999999999
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHh
Q 012596 427 KMPVLTAVARIIDNELTPKKAVLELM 452 (460)
Q Consensus 427 ~~P~~~~v~~ll~~~~~~~~~~~~l~ 452 (460)
++++.+++.++ ++..|..+++.+.
T Consensus 279 ~~~l~~~a~~i--N~~~~~~v~~~~~ 302 (425)
T PRK15182 279 YPEIILAGRRL--NDNMGNYVSEQLI 302 (425)
T ss_pred CcHHHHHHHHH--HHHHHHHHHHHHH
Confidence 99999999987 4556666655443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=164.79 Aligned_cols=155 Identities=20% Similarity=0.230 Sum_probs=117.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||||||||+|.||..||.+|.++| ++|++|||++++++++.+.| ++.++++.|+++.+|+||+|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAEAG--------------AEVADSPAEAAEQADVVILC 64 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHHTT--------------EEEESSHHHHHHHBSEEEE-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHHhh--------------hhhhhhhhhHhhcccceEee
Confidence 689999999999999999999999 99999999999999998865 46778999999999999999
Q ss_pred cch-hcHHHHHHH--hhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 207 MPV-QFSSSFLEG--ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 207 Vp~-~~~~~vl~~--i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
||+ .++++++.+ +.+.+++++++|++++ ..+++.+.+.+.+.+. | +.++.+|..+...........++.+
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT-~~p~~~~~~~~~~~~~-g-----~~~vdapV~Gg~~~a~~g~l~~~~g 137 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPGKIIIDMST-ISPETSRELAERLAAK-G-----VRYVDAPVSGGPPGAEEGTLTIMVG 137 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---HHHHHHHHHHHHHT-T-----EEEEEEEEESHHHHHHHTTEEEEEE
T ss_pred cccchhhhhhhhhhHHhhccccceEEEecCC-cchhhhhhhhhhhhhc-c-----ceeeeeeeecccccccccceEEEcc
Confidence 997 678999998 9999999999999986 7777666666666543 3 3455555554432222223345666
Q ss_pred CCHHHHHHHHHHHhcCCceEE
Q 012596 284 KDRKLANAVQQLLASKHLRIS 304 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~ 304 (460)
++.+.+++++++|+..+-+++
T Consensus 138 G~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 138 GDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp S-HHHHHHHHHHHHHHEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCce
Confidence 789999999999998877766
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-19 Score=182.02 Aligned_cols=273 Identities=14% Similarity=0.101 Sum_probs=181.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~ 198 (460)
.+|||+|||+|.||..||..|+++| ++|++||+++++++.++..+ ...+.++.. . ...+.++++ ++
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~l~~~~~~g~l~~~~~----~~ 74 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGE-IHIVEPDLDMVVKTAVEGGYLRATTT----PE 74 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCC-CCcCCCCHHHHHHHHhhcCceeeecc----cc
Confidence 5689999999999999999999999 99999999999999876533 222222221 0 122344433 34
Q ss_pred CCcEEEEccch----------hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCC--------CCCCEE
Q 012596 199 GADYCLHAMPV----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--------PRQPFI 260 (460)
Q Consensus 199 ~aDiVilaVp~----------~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~--------~~~~~~ 260 (460)
+||+||+|||. ..+.+++++|.++++++++||..++ +.+.+.+.+...+.+.... ....+.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST-v~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~ 153 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST-SPVGATEQMAEWLAEARPDLTFPQQAGEQADIN 153 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC-CCCCHHHHHHHHHHHhccCCcccccccCCCCeE
Confidence 79999999997 4677788899999999999998885 8888777777666553111 012345
Q ss_pred EEECcccHHHH----hccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012596 261 ALSGPSFALEL----MNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN 336 (460)
Q Consensus 261 v~~gP~~a~e~----~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~ 336 (460)
+.+.|.+..+. ..+.+.. ++++.+.+..++++++|+..+-.+....++...+ ..|+.+
T Consensus 154 v~~~PE~~~~G~~~~~~~~~~~-vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae-----------------~~Kl~~ 215 (415)
T PRK11064 154 IAYCPERVLPGQVMVELIKNDR-VIGGMTPVCSARASELYKIFLEGECVVTNSRTAE-----------------MCKLTE 215 (415)
T ss_pred EEECCCccCCCChhhhhcCCCE-EEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHH-----------------HHHHHH
Confidence 67888654421 1223333 4566688999999999998764444445554444 445566
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHH
Q 012596 337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGA 416 (460)
Q Consensus 337 n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~ 416 (460)
|.+.++..+.++|+..+|++.|+|+..+.+.++....+ ....+|.-+ .|.++. ||..+
T Consensus 216 N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~ri--------~~l~pG~G~-GG~Clp-------------kD~~~ 273 (415)
T PRK11064 216 NSFRDVNIAFANELSLICADQGINVWELIRLANRHPRV--------NILQPGPGV-GGHCIA-------------VDPWF 273 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCCCc--------ccCCCCCCC-CCcccc-------------ccHHH
Confidence 77788889999999999999999998887654321111 001122212 233332 55555
Q ss_pred HHHHHHHcCCCChHHHHHHHHHhcCCCHHHHHHHH
Q 012596 417 VIALAQKYNVKMPVLTAVARIIDNELTPKKAVLEL 451 (460)
Q Consensus 417 vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l 451 (460)
+ ..+++...++.+++.++- +..+...++.+
T Consensus 274 L---~~~~~~~~~l~~~a~~~N--~~~~~~v~~~~ 303 (415)
T PRK11064 274 I---VAQNPQQARLIRTAREVN--DGKPHWVIDQV 303 (415)
T ss_pred H---HHhcCCccHHHHHHHHHH--HHhHHHHHHHH
Confidence 5 345677888888888763 44444444433
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=178.52 Aligned_cols=282 Identities=16% Similarity=0.210 Sum_probs=195.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-C-----CCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L-----PENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-l-----~~~i~a~~~~~ea~~~a 200 (460)
||||+|||+|++|..+|..|++.|.+++|+++|.++++++.+++.+.. .+.++.. + ..++.++++..+++++|
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~-~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLP-IYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCc-cCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 589999999999999999999986558899999999999999886532 2222221 1 23478889988889999
Q ss_pred cEEEEccchh---------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECc
Q 012596 201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP 265 (460)
Q Consensus 201 DiVilaVp~~---------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP 265 (460)
|++|+|||.. .+.++++.|.++++++++||.-++ +.+.+.+.+.+.+.+...+ ..+.+.+.|
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST-vp~Gtt~~~~~~l~~~~~g--~~f~v~~~P 156 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKG--INFQILSNP 156 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC-CCCChHHHHHHHHHhhCCC--CCeEEEECC
Confidence 9999999621 467788899999998888776554 7777766666666553211 356788999
Q ss_pred ccHHHHhc----cCCeEEEEccCC----HHHHHHHHHHHhcCC-ceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012596 266 SFALELMN----KLPTAMVVASKD----RKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN 336 (460)
Q Consensus 266 ~~a~e~~~----g~~~~i~i~~~d----~~~~~~l~~lL~~~g-~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~ 336 (460)
.+..+... -.+..+++|+.+ .+..+++++++...- -......++..+|..|.+ .
T Consensus 157 Erl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~-----------------e 219 (473)
T PLN02353 157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLA-----------------A 219 (473)
T ss_pred CccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHH-----------------H
Confidence 88764311 234456677764 335788888887542 123344566666666544 4
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHH
Q 012596 337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAG 415 (460)
Q Consensus 337 n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g 415 (460)
|.+.++..+.++|+..+|++.|+|...+.+.++....+ +.++ .+|..+ .|.++. ||..
T Consensus 220 N~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~ri-------g~~~l~PG~G~-GG~Clp-------------kD~~ 278 (473)
T PLN02353 220 NAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRI-------GPKFLNASVGF-GGSCFQ-------------KDIL 278 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCCcC-------CCCCCCCCCCC-CCcchh-------------hhHH
Confidence 56677888999999999999999987776543321110 0011 112222 233432 7889
Q ss_pred HHHHHHHHcCCC--ChHHHHHHHHHhcCCCHHHHHHHHh
Q 012596 416 AVIALAQKYNVK--MPVLTAVARIIDNELTPKKAVLELM 452 (460)
Q Consensus 416 ~vv~lA~~~gv~--~P~~~~v~~ll~~~~~~~~~~~~l~ 452 (460)
++...|+++|++ .++.+++.++ ++..+...++.+.
T Consensus 279 ~L~~~a~~~g~~~~~~l~~~~~~i--N~~~~~~vv~~~~ 315 (473)
T PLN02353 279 NLVYICECNGLPEVAEYWKQVIKM--NDYQKSRFVNRVV 315 (473)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHH--HHhhHHHHHHHHH
Confidence 999999999998 8888888865 4555666666554
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-18 Score=174.04 Aligned_cols=269 Identities=18% Similarity=0.162 Sum_probs=175.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-----CCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-----l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|.||..+|..|+. | ++|++||+++++++.+++ |....+.++.. ....+..+.+..++++++|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G--~~VigvD~d~~kv~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N--HEVVALDILPSRVAMLND-RISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C--CcEEEEECCHHHHHHHHc-CCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCE
Confidence 689999999999999988875 8 999999999999998886 33222322221 01234455667777899999
Q ss_pred EEEccchh-----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012596 203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL 271 (460)
Q Consensus 203 VilaVp~~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~ 271 (460)
||+|||.. ++++++++|.+ +++++++|..++ +.+.+.+.+.+.+.+ ..+..+|.+..+.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST-v~pgtt~~l~~~~~~--------~~v~~~PE~l~~G 146 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST-VPVGFTAAMHKKYRT--------ENIIFSPEFLREG 146 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee-cCCchHHHHHHHhhc--------CcEEECcccccCC
Confidence 99999954 46777888877 688888888775 888776555544432 1245688876542
Q ss_pred hc----cCCeEEEEccCCHHHHHHHHHHHhc--CCceEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Q 012596 272 MN----KLPTAMVVASKDRKLANAVQQLLAS--KHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVA 344 (460)
Q Consensus 272 ~~----g~~~~i~i~~~d~~~~~~l~~lL~~--~g~~v~-~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~ 344 (460)
.. -.+..+++|+ +.+..+++.++|.. .+-.+. ...++...|. .|+.+|.+.++..
T Consensus 147 ~a~~d~~~p~rvv~G~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~-----------------~Kl~~N~~~a~~I 208 (388)
T PRK15057 147 KALYDNLHPSRIVIGE-RSERAERFAALLQEGAIKQNIPTLFTDSTEAEA-----------------IKLFANTYLAMRV 208 (388)
T ss_pred cccccccCCCEEEEEc-CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHH-----------------HHHHHHHHHHHHH
Confidence 11 1233445554 45667888888853 221222 3345444444 4556677888889
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHH
Q 012596 345 QGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423 (460)
Q Consensus 345 ~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~ 423 (460)
+.++|+..+|+++|+|...+.+..+....+ +..+ .+|.-+ .|.++. ||..++...+
T Consensus 209 a~~NE~a~lae~~GiD~~eV~~a~~~d~ri-------~~~~l~pG~G~-GG~Clp-------------kD~~~L~~~~-- 265 (388)
T PRK15057 209 AYFNELDSYAESLGLNTRQIIEGVCLDPRI-------GNHYNNPSFGY-GGYCLP-------------KDTKQLLANY-- 265 (388)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHhcCCCCC-------CCccCCCCCCC-CCcChh-------------hhHHHHHHhc--
Confidence 999999999999999998887654321111 0010 122222 244442 5666775544
Q ss_pred cCCCChHHHHHHHHHhcCCCHHHHHHHHhc
Q 012596 424 YNVKMPVLTAVARIIDNELTPKKAVLELMS 453 (460)
Q Consensus 424 ~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~ 453 (460)
.+++.|+.+++.++ ++..|...++.+..
T Consensus 266 ~~~~~~l~~~~~~~--N~~~~~~~~~~~~~ 293 (388)
T PRK15057 266 QSVPNNLISAIVDA--NRTRKDFIADAILS 293 (388)
T ss_pred cCCCcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 57888999988876 55666666666654
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-18 Score=177.07 Aligned_cols=203 Identities=10% Similarity=0.080 Sum_probs=148.6
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCcEEEE
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYCLH 205 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDiVil 205 (460)
+|||||+|.||.+||.+|+++| ++|++|+|++++++.+.+.+.. + ..+..++++++++ +.+|+||+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G--~~V~v~drt~~~~~~l~~~~~~-----g----~~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG--FTVSVYNRTPEKTDEFLAEHAK-----G----KKIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHhhccC-----C----CCceecCCHHHHHhhcCCCCEEEE
Confidence 4899999999999999999999 9999999999999988865211 0 0123344566644 56899999
Q ss_pred ccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 206 AMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 206 aVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
|||+ ..++++++++.+++.++++||+++|+...++.+. .+.+.+. | +.++.+|..+...+...... ++.|+
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~-g-----i~fvdapVsGG~~gA~~G~~-im~GG 141 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAK-G-----ILFVGSGVSGGEEGARKGPS-IMPGG 141 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhc-C-----CEEEcCCCCCCHHHHhcCCc-CCCCC
Confidence 9997 6789999999999999999999998665554333 2333322 2 34677777665433222223 45667
Q ss_pred CHHHHHHHHHHHhcCCceE------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-Hc
Q 012596 285 DRKLANAVQQLLASKHLRI------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KM 357 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v------~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~-a~ 357 (460)
+.+.+++++++|+..+-++ .+.++. |.+.-+|+.+|.+.....+++.|++.+++ +.
T Consensus 142 ~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~-----------------GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~ 204 (467)
T TIGR00873 142 SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD-----------------GAGHYVKMVHNGIEYGDMQLICEAYDILKDGL 204 (467)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCceEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999766542 343432 34455666778888888999999999985 79
Q ss_pred CCCccccccc
Q 012596 358 GAKPATITGL 367 (460)
Q Consensus 358 Gi~~~~~~~~ 367 (460)
|++++.+.++
T Consensus 205 g~~~~~l~~v 214 (467)
T TIGR00873 205 GLSNEEIAEV 214 (467)
T ss_pred CCCHHHHHHH
Confidence 9998877654
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=153.60 Aligned_cols=252 Identities=13% Similarity=0.137 Sum_probs=163.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC----eEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQL----KVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~----~V~v~-~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|+||.+|+..|.++| + +|++| +|++++.+.+.+.| +..+++..++++++|+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g--~~~~~~i~v~~~r~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASG--VVPPSRISTADDSNPARRDVFQSLG--------------VKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCC--CCCcceEEEEeCCCHHHHHHHHHcC--------------CEEeCChHHHHhcCCE
Confidence 78999999999999999999998 6 89998 99998888776654 3455677788889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
||+|+|.+++.++++++.+.+.++++||++.+|+..+ .+.+.++.. . .+...|+.+.....+. +.+..+
T Consensus 65 Vil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~-------~l~~~~~~~--~-vvr~mP~~~~~~~~~~-~~l~~~ 133 (266)
T PLN02688 65 IILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLA-------DLQEWAGGR--R-VVRVMPNTPCLVGEAA-SVMSLG 133 (266)
T ss_pred EEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHH-------HHHHHcCCC--C-EEEECCCcHHHHhCce-EEEEeC
Confidence 9999999999999999988888899999998888654 233444431 1 2346788776654443 223333
Q ss_pred -cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 283 -SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 283 -~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
+.+.+.++.++++|+..|. +.+.++-. .+.+....|.+ +.+...+..++.|+ +.+.|+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~--------~d~~~~~~g~g-------~a~~~~~~~a~~ea---~~~~Gl~~ 194 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKL--------LDAVTGLSGSG-------PAYIFLAIEALADG---GVAAGLPR 194 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHH--------cchhHhhhcCH-------HHHHHHHHHHHHHH---HHHcCCCH
Confidence 3467889999999999998 55543211 11111111211 22345666777777 88899998
Q ss_pred cccccccCCCceeeecccCCCccchHHHHh-hCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhc
Q 012596 362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 362 ~~~~~~~~~gd~~~t~~s~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
+...++.. + +.. .....+ ..|...+++.+..- ..-| .....++..++.|+.-.+.+++.+.++.
T Consensus 195 ~~a~~~~~--~---~~~-------gs~~l~~~~~~~~~~l~~~v~-spgG--~t~~~l~~l~~~g~~~~~~~a~~~~~~r 259 (266)
T PLN02688 195 DVALSLAA--Q---TVL-------GAAKMVLETGKHPGQLKDMVT-SPGG--TTIAGVHELEKGGFRAALMNAVVAAAKR 259 (266)
T ss_pred HHHHHHHH--H---HHH-------HHHHHHHhcCCCHHHHHHhCC-CCch--HHHHHHHHHHHCChHHHHHHHHHHHHHH
Confidence 87765310 0 000 001111 22333333322110 1111 2345567777788888888888777654
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-16 Score=155.52 Aligned_cols=265 Identities=17% Similarity=0.153 Sum_probs=180.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG 199 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~ 199 (460)
.++|+|||+|.+|.++|..++++| ++|+.+|.++.+++.++.. ......++.. -...+++++|+++ ++.
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G--~~ViG~DIn~~~Vd~ln~G-~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~ 84 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAG--FKVIGVDINQKKVDKLNRG-ESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKE 84 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcC--CceEeEeCCHHHHHHHhCC-cceeecCcHHHHHHHHHhcCCceEecChhh-ccc
Confidence 489999999999999999999999 9999999999999999873 2211112221 1356889999988 479
Q ss_pred CcEEEEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHH-hCCC-CCCEEEEECccc
Q 012596 200 ADYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA-LRNP-RQPFIALSGPSF 267 (460)
Q Consensus 200 aDiVilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~-lg~~-~~~~~v~~gP~~ 267 (460)
||++|+|||.. .++...+.|++.|++|.++|.=++ +.|.+.+.+...+.+. -|-. ..++.+...|..
T Consensus 85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST-~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST-TPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC-CCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 99999999963 366777889999999998887665 7777766666666554 2211 134556666654
Q ss_pred HHH--H---hccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Q 012596 268 ALE--L---MNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL 342 (460)
Q Consensus 268 a~e--~---~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al 342 (460)
... . ....+ -+++|.+++..+....+++..--.+....+...+|+.|++-| ..+..
T Consensus 164 v~PG~~~~el~~~~--kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN-----------------~fRdV 224 (436)
T COG0677 164 VLPGNVLKELVNNP--KVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTEN-----------------TFRDV 224 (436)
T ss_pred cCCCchhhhhhcCC--ceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhh-----------------hhhHH
Confidence 321 0 01111 267888888888889998876555666777787887776554 55777
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHH
Q 012596 343 VAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQ 422 (460)
Q Consensus 343 ~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~ 422 (460)
.+++.+|+..+|.++|+|...+.+.+..- +.-..+.+|.-++ |.++. .|--+++..|+
T Consensus 225 NIALaNElali~~~~GIdvwevIeaAnt~--------P~~~~~~PGpGvG-GHCIp-------------vDP~fl~~ka~ 282 (436)
T COG0677 225 NIALANELALICNAMGIDVWEVIEAANTK--------PRVNIFYPGPGVG-GHCIP-------------VDPYFLTWKAP 282 (436)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHhccC--------CceeecCCCCCCC-Ccccc-------------cCchheeeccc
Confidence 88899999999999999976666543211 1011112222222 23321 12335666666
Q ss_pred HcCCCChHHHHHHHH
Q 012596 423 KYNVKMPVLTAVARI 437 (460)
Q Consensus 423 ~~gv~~P~~~~v~~l 437 (460)
++|+++.+.++..++
T Consensus 283 ~yg~~~rlI~tAreI 297 (436)
T COG0677 283 EYGLPARLIRTAREI 297 (436)
T ss_pred ccCCchHHHHHHHHH
Confidence 677777776666665
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.5e-15 Score=141.45 Aligned_cols=162 Identities=15% Similarity=0.224 Sum_probs=124.4
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCC-CCe-EEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKS-QLK-VYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~-~~~-V~v~~r~-~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
||+.+||+|||+|.||.+++..|.++|. ..+ +++++|+ +++.+.+.+.. ++..+++.+++++++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 67 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------------NVSTTTDWKQHVTSV 67 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------------CcEEeCChHHHHhcC
Confidence 5567899999999999999999998762 233 7788874 66677666531 134456788888999
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV 280 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~ 280 (460)
|+||+++|.+..+++++++.++++ +++||++.+|+..+ .+++.++.. ...++.+|+++.++..+.+....
T Consensus 68 DiViiavp~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~-------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 68 DTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGPS-------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred CEEEEecCHHHHHHHHHHHHhhcc-CCEEEEECCCCCHH-------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEee
Confidence 999999999999999999988776 67999999999875 355555432 23468999999998888655443
Q ss_pred EccCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 281 VASKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 281 i~~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
....+.+..+.++++|+..|..+...++
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~~e~ 165 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLCTEE 165 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEECHH
Confidence 4456788899999999999988876443
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.9e-15 Score=144.46 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=123.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
.+||+|||+|+||.+|+..|.++|. ..+|++|+|++++++.+.+ .| +..+++..+++++||+|
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g--------------~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG--------------ITITTNNNEVANSADIL 67 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC--------------cEEeCCcHHHHhhCCEE
Confidence 3689999999999999999999873 2479999999988887765 33 23455777778899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~- 282 (460)
|+|||.+.+.++++++.+.+++++++||+..|+..+ .+++.++.. .-.+...|+.+..++.|. +.+..+
T Consensus 68 iLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~-------~l~~~l~~~--~~vvR~MPN~~~~vg~g~-t~~~~~~ 137 (272)
T PRK12491 68 ILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIK-------STENEFDRK--LKVIRVMPNTPVLVGEGM-SALCFNE 137 (272)
T ss_pred EEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHH-------HHHHhcCCC--CcEEEECCChHHHHcCce-EEEEeCC
Confidence 999999999999999999888889999999999875 355555431 135789999988876663 222332
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
..+.+..+.++.+|+..|......++
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~~~~E~ 163 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTEVVNEK 163 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcHH
Confidence 23466788999999999988766554
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-15 Score=147.10 Aligned_cols=199 Identities=19% Similarity=0.223 Sum_probs=134.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC--CCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKK--SQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G--~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
+.|||+|||+|+||.+|+..|.++| ..++|++|+|++ ++++.+.+.. ++..+.++.++++++|+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------------g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-------------GVKGTHNKKELLTDANI 68 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-------------CceEeCCHHHHHhcCCE
Confidence 4579999999999999999999886 236899999975 4566665431 13455677788889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
||+|||++.+.++++++.+.++++++||++.+|+.+++ +.+.++.. ...+...|+.+.....+ .+ ++.+
T Consensus 69 Vilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~-------l~~~~~~~--~~v~r~mPn~~~~~~~~-~t-~~~~ 137 (279)
T PRK07679 69 LFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHS-------IRNLLQKD--VPIIRAMPNTSAAILKS-AT-AISP 137 (279)
T ss_pred EEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHH-------HHHHcCCC--CeEEEECCCHHHHHhcc-cE-EEee
Confidence 99999999999999999888888899999999998753 33333321 12355667666544333 23 2333
Q ss_pred cC--CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 283 SK--DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 283 ~~--d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+. +.+..+.++++|+..|..+...++.. +.+...+|.+ +.+...+..++.| .+++.|++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~---------~~~~a~~Gsg-------pa~~~~~~eal~e---~~~~~Gl~ 198 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSVVEEEDM---------HAVTALSGSG-------PAYIYYVVEAMEK---AAKKIGLK 198 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEeCHHHh---------hhHHHhhcCH-------HHHHHHHHHHHHH---HHHHcCCC
Confidence 32 36788999999999998776654421 1111111111 1123333444444 48899999
Q ss_pred ccccccc
Q 012596 361 PATITGL 367 (460)
Q Consensus 361 ~~~~~~~ 367 (460)
++...++
T Consensus 199 ~~~a~~~ 205 (279)
T PRK07679 199 EDVAKSL 205 (279)
T ss_pred HHHHHHH
Confidence 8776653
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=159.50 Aligned_cols=193 Identities=11% Similarity=0.056 Sum_probs=143.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCC---CcEEEEccchh-cH
Q 012596 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLG---ADYCLHAMPVQ-FS 212 (460)
Q Consensus 138 mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVilaVp~~-~~ 212 (460)
||..||.+|+++| ++|++|||++++++.+.+. |.. .++..+++++++++. +|+||+|||+. ++
T Consensus 1 MG~~mA~nL~~~G--~~V~v~nrt~~~~~~l~~~~g~~----------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v 68 (459)
T PRK09287 1 MGKNLALNIASHG--YTVAVYNRTPEKTDEFLAEEGKG----------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPV 68 (459)
T ss_pred CcHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhCCC----------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHH
Confidence 8999999999999 9999999999999988873 310 134566788887764 89999999975 68
Q ss_pred HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHH
Q 012596 213 SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292 (460)
Q Consensus 213 ~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l 292 (460)
++|++++.+.+.+|.+||+++|....++ +...+.+.+. | +.++..|..+.+.+...... ++.|++.+.++++
T Consensus 69 ~~Vi~~l~~~l~~GdiiID~gn~~~~~t-~~~~~~l~~~-G-----i~fvdapVSGG~~gA~~G~s-iM~GG~~~a~~~~ 140 (459)
T PRK09287 69 DAVIEQLLPLLEKGDIIIDGGNSNYKDT-IRREKELAEK-G-----IHFIGMGVSGGEEGALHGPS-IMPGGQKEAYELV 140 (459)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCCE-EEEeCCHHHHHHH
Confidence 9999999999999999999998554443 3333444432 3 34666666665433222233 4556689999999
Q ss_pred HHHHhcCCceE-------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-HcCCCcccc
Q 012596 293 QQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KMGAKPATI 364 (460)
Q Consensus 293 ~~lL~~~g~~v-------~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~-a~Gi~~~~~ 364 (460)
+++|+..+-++ .+.++. |.+.-+|+.+|.+.....+++.|++.+++ +.|++++.+
T Consensus 141 ~piL~~ia~~~~~g~~c~~~vG~~-----------------GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l 203 (459)
T PRK09287 141 APILEKIAAKVEDGEPCVTYIGPD-----------------GAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEI 203 (459)
T ss_pred HHHHHHHhhhhcCCCCceeeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999766553 444442 34455666778888888999999999999 589998877
Q ss_pred ccc
Q 012596 365 TGL 367 (460)
Q Consensus 365 ~~~ 367 (460)
.++
T Consensus 204 ~~v 206 (459)
T PRK09287 204 ADV 206 (459)
T ss_pred HHH
Confidence 654
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-14 Score=138.97 Aligned_cols=159 Identities=12% Similarity=0.167 Sum_probs=117.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|+||.+++..|.++|. ..+|++|+|++++.+.+.+... ++..+.+..+++.++|+||+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~------------g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP------------GIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC------------CeEEECCHHHHHHhCCEEEE
Confidence 589999999999999999999872 1379999999988777655310 23455677787889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-C
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K 284 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~-~ 284 (460)
|||++.+.++++++.++++++++||++++|+..+ .+.+.++. ..+...|+.+.....|. +.+..+. .
T Consensus 69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~-------~L~~~~~~----~~~r~~p~~~~~~~~G~-t~~~~g~~~ 136 (273)
T PRK07680 69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVE-------QLETLVPC----QVARIIPSITNRALSGA-SLFTFGSRC 136 (273)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC----CEEEECCChHHHHhhcc-EEEeeCCCC
Confidence 9999999999999999888889999999988543 34444442 13445566554333443 2223332 3
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChH
Q 012596 285 DRKLANAVQQLLASKHLRISTSSDVT 310 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~~~Di~ 310 (460)
+.+..+.++++|+..|..+...+++.
T Consensus 137 ~~~~~~~~~~ll~~~G~~~~i~e~~~ 162 (273)
T PRK07680 137 SEEDQQKLERLFSNISTPLVIEEDIT 162 (273)
T ss_pred CHHHHHHHHHHHHcCCCEEEEChHhc
Confidence 56678999999999998887776643
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-14 Score=140.58 Aligned_cols=255 Identities=16% Similarity=0.124 Sum_probs=158.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCccCCCCCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~-----------~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+|+|+|||+|.||+.||..|+++| ++|++||++++.++...+ .|.- .......+..++..++++.+
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~-~~~~~~~~~~~i~~~~~~~~ 78 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLL-DGEAPDAVLARIRVTDSLAD 78 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-chhhHHHHhcCeEEECcHHH
Confidence 468999999999999999999999 999999999887665432 2210 00000112345677889988
Q ss_pred hcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhc
Q 012596 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMN 273 (460)
Q Consensus 196 a~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~ 273 (460)
++++||+|+.|+|.. ....++.++.+..+++.++.+.+.+... ..+.+.+... ...+...|..+...
T Consensus 79 a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~-------~~la~~~~~~--~~~~~~hp~~p~~~-- 147 (308)
T PRK06129 79 AVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA-------SAFTEHLAGR--ERCLVAHPINPPYL-- 147 (308)
T ss_pred hhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCH-------HHHHHhcCCc--ccEEEEecCCCccc--
Confidence 889999999999975 3456677777777666666554443322 2233333221 12344444433211
Q ss_pred cCCeEEEEc---cCCHHHHHHHHHHHhcCCceEEEcC-ChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012596 274 KLPTAMVVA---SKDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (460)
Q Consensus 274 g~~~~i~i~---~~d~~~~~~l~~lL~~~g~~v~~~~-Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E 349 (460)
.+ .+.+. +.+++.++++++++...|..+...+ +..|. +. | .+...+++|
T Consensus 148 -~~-lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~-----i~----------------n----rl~~a~~~E 200 (308)
T PRK06129 148 -IP-VVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF-----VL----------------N----RLQGALLRE 200 (308)
T ss_pred -Cc-eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH-----HH----------------H----HHHHHHHHH
Confidence 11 22233 3678899999999999998876653 43321 11 1 134478899
Q ss_pred HHHHHHHcCCCcccccccc--CCCceeeecccCCCccchHHHHh-hCCCChHHHHhhcccceehhhhHHHHHHHHHHcCC
Q 012596 350 IRWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426 (460)
Q Consensus 350 ~~~la~a~Gi~~~~~~~~~--~~gd~~~t~~s~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv 426 (460)
++.++++.|++++.+.+.. +.|..... . ..+. -.++ ..|... .. ..+|..+..+++++.+.
T Consensus 201 A~~l~~~g~~~~~~id~~~~~~~g~~~~~-~----gp~~-~~d~~~~~g~~-~~---------~~k~~~l~~~~~~~~~~ 264 (308)
T PRK06129 201 AFRLVADGVASVDDIDAVIRDGLGLRWSF-M----GPFE-TIDLNAPGGVA-DY---------AQRYGPMYRRMAAERGQ 264 (308)
T ss_pred HHHHHHcCCCCHHHHHHHHHhccCCCccC-c----CHHH-HHhccccccHH-HH---------HHHHHHHHHhhccccCC
Confidence 9999999999998876542 22211100 0 1111 1111 112211 11 23788899999999999
Q ss_pred CChHHHHHHHHH
Q 012596 427 KMPVLTAVARII 438 (460)
Q Consensus 427 ~~P~~~~v~~ll 438 (460)
+.|+++...+-+
T Consensus 265 ~~~~~~~~~~~~ 276 (308)
T PRK06129 265 PVPWDGELVARV 276 (308)
T ss_pred CchhhHHHHHHH
Confidence 999997766543
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-15 Score=148.81 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=135.9
Q ss_pred CeEEEECcch--------------------HHHHHHHHHHhcCCCCeEEEEeCCHHH-----HHHHHhhcCCCccCCCCC
Q 012596 128 NKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPAV-----CQSINEKHCNCRYFPEQK 182 (460)
Q Consensus 128 ~kI~IIGaG~--------------------mG~~~A~~La~~G~~~~V~v~~r~~~~-----~~~l~~~g~~~~~~~~~~ 182 (460)
|||.|.|+|+ -|++||.+|+++| ++|++|||+++. .+.+.+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG--~~V~v~Dr~~~~l~~~~~~~l~~~G---------- 68 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAG--HDVVLAEPNRSILSEELWKKVEDAG---------- 68 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCC--CeEEEEECCHHHhhHHHHHHHHHCC----------
Confidence 6889999987 4889999999999 999999999873 33444333
Q ss_pred CCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC------
Q 012596 183 LPENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------ 255 (460)
Q Consensus 183 l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~------ 255 (460)
+.++++..+++++||+||+|+|... ++++++++.+.++++++||+++++ .+. ..++.+.+.++..
T Consensus 69 ----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~-~~~---~~s~~l~~~l~~~~~~~gi 140 (342)
T PRK12557 69 ----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTV-SPV---VLYYSLEGELRTKRKDVGI 140 (342)
T ss_pred ----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCC-CHH---HHHHHHHHHhcccccccCe
Confidence 4566688888899999999999887 899999999999999999998864 332 2223333333210
Q ss_pred --CCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc
Q 012596 256 --RQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN 333 (460)
Q Consensus 256 --~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k 333 (460)
..+..+..+|.++..+..|.++. ...+.+.+.+++++++|+..|.+++..+. + .+ ...|
T Consensus 141 ~~~~p~~v~Gae~g~l~Vm~gg~t~-~~~~~~~e~~e~v~~LL~a~G~~v~~~~~--g--~~--------------~~vk 201 (342)
T PRK12557 141 SSMHPAAVPGTPQHGHYVIAGKTTN-GTELATEEQIEKCVELAESIGKEPYVVPA--D--VV--------------SAVA 201 (342)
T ss_pred eecCCccccccccchheEEeCCCcc-cccCCCHHHHHHHHHHHHHcCCEEEEeCH--H--HH--------------HHHH
Confidence 11222233333333222222221 11234788899999999999988876652 2 12 2233
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 334 LGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 334 l~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
+.+|.+.++...++.|++.++++.|.+|..+.+
T Consensus 202 ~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~ 234 (342)
T PRK12557 202 DMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 345666677788889999999999988776543
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=134.10 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=141.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+|||+|||+|+||.+|+..|.++|. ..+|++.+|++++.+.+.+. |. ..+++..+++..+|+|
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~--------------~~~~~~~~~~~~advv 66 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGV--------------VTTTDNQEAVEEADVV 66 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCC--------------cccCcHHHHHhhCCEE
Confidence 4799999999999999999999982 36899999999988755543 21 1255777888999999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~- 282 (460)
|+|||.+..++++.++.+ ..++++|||+..|+..+ .+.+.++. .-.+...|+.+..+..|.. .+..+
T Consensus 67 ~LavKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~-------~l~~~l~~---~~vvR~MPNt~a~vg~g~t-~i~~~~ 134 (266)
T COG0345 67 FLAVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSIE-------TLERLLGG---LRVVRVMPNTPALVGAGVT-AISANA 134 (266)
T ss_pred EEEeChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHH-------HHHHHcCC---CceEEeCCChHHHHcCcce-eeecCc
Confidence 999999999999999988 77899999999999875 35666652 2357889999888777642 22221
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
..+.+..+.+.++|+..|..+.+.++.+.. +...+|. .+ +.+...+..+..-+.+.|++.+
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~E~~~da---------~TaisGS-------gP---Ayv~~~iEal~~agv~~Gl~~~ 195 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVEESLMDA---------VTALSGS-------GP---AYVFLFIEALADAGVRLGLPRE 195 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEechHHhhH---------HHHHhcC-------CH---HHHHHHHHHHHHHHHHcCCCHH
Confidence 235678889999999999888877654321 1111121 12 2333445555666778888876
Q ss_pred cccc
Q 012596 363 TITG 366 (460)
Q Consensus 363 ~~~~ 366 (460)
+-.+
T Consensus 196 ~A~~ 199 (266)
T COG0345 196 EARE 199 (266)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=147.36 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=135.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh----cCCCccCCCCCC--CCceEEeCCHHhhcCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK----HCNCRYFPEQKL--PENVIATTDAKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~----g~~~~~~~~~~l--~~~i~a~~~~~ea~~~ 199 (460)
..|||+|||+|.||++||..|+++| ++|++||++++.++.+.+. .....++....+ ..++..++++++++++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G--~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~ 80 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAG--IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG 80 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC
Confidence 3579999999999999999999999 9999999999877655321 000011111111 1236777899888999
Q ss_pred CcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCe
Q 012596 200 ADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPT 277 (460)
Q Consensus 200 aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~ 277 (460)
||+||.|+|... ...++.++.+.++++++|.+.+.|+... .+.+.+.. ....++..|..+... .+.
T Consensus 81 aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s-------~l~~~~~~--~~r~~~~hP~nP~~~---~~L 148 (495)
T PRK07531 81 ADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPS-------DLQEGMTH--PERLFVAHPYNPVYL---LPL 148 (495)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCC--cceEEEEecCCCccc---Cce
Confidence 999999999764 4456778888888888888877777653 22333322 123455555443321 122
Q ss_pred EEEEccC--CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHH-HHHHHHHHHHHHHH
Q 012596 278 AMVVASK--DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMA-ALVAQGCSEIRWLA 354 (460)
Q Consensus 278 ~i~i~~~--d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~-al~~~~~~E~~~la 354 (460)
..++++. +.+.+++++++|+..|......+. ..+|... .+....++|++.++
T Consensus 149 vevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k-------------------------~~~gfi~nrl~~a~~~EA~~L~ 203 (495)
T PRK07531 149 VELVGGGKTSPETIRRAKEILREIGMKPVHIAK-------------------------EIDAFVGDRLLEALWREALWLV 203 (495)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecC-------------------------CCcchhHHHHHHHHHHHHHHHH
Confidence 2233332 378999999999999987776542 1223333 23344469999999
Q ss_pred HHcCCCccccccc
Q 012596 355 TKMGAKPATITGL 367 (460)
Q Consensus 355 ~a~Gi~~~~~~~~ 367 (460)
++.|++++++.+.
T Consensus 204 ~~g~~s~~~id~~ 216 (495)
T PRK07531 204 KDGIATTEEIDDV 216 (495)
T ss_pred HcCCCCHHHHHHH
Confidence 9999998877653
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-13 Score=131.10 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=113.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
||||+|||+|+||..++..|.++|.. ++|.+|+|++++.+.+.+. | +.++.+..+++.++|+||
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g--------------~~~~~~~~~~~~~advVi 67 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYG--------------VRAATDNQEAAQEADVVV 67 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcC--------------CeecCChHHHHhcCCEEE
Confidence 68999999999999999999988621 4799999999888877764 2 234456777788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS- 283 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~- 283 (460)
+|+|...+.++++++.+.+ +++||++++|+..+ .+++.++.. .-.+..-|.++.....+. +.+..+.
T Consensus 68 l~v~~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~-------~l~~~~~~~--~~iv~~~P~~p~~~~~~~-~~i~~~~~ 135 (267)
T PRK11880 68 LAVKPQVMEEVLSELKGQL--DKLVVSIAAGVTLA-------RLERLLGAD--LPVVRAMPNTPALVGAGM-TALTANAL 135 (267)
T ss_pred EEcCHHHHHHHHHHHHhhc--CCEEEEecCCCCHH-------HHHHhcCCC--CcEEEecCCchHHHcCce-EEEecCCC
Confidence 9999999999999998876 57999999998643 344444421 123445677665544332 2222222
Q ss_pred CCHHHHHHHHHHHhcCCceEEEc
Q 012596 284 KDRKLANAVQQLLASKHLRISTS 306 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~ 306 (460)
.+.+..+.++.+|+..|..+...
T Consensus 136 ~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 136 VSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred CCHHHHHHHHHHHHhCCeEEEEC
Confidence 46788999999999999766554
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-13 Score=132.86 Aligned_cols=159 Identities=11% Similarity=0.151 Sum_probs=120.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+||+|||+|+||.+++..|.++|. .++|++|+|+. ++.+.+.... ..+.++.+..++++++|+|
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~------------~~~~~~~~~~e~~~~aDvV 68 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKY------------PTVELADNEAEIFTKCDHS 68 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHc------------CCeEEeCCHHHHHhhCCEE
Confidence 4789999999999999999998862 26899999864 3445444321 0134456777778899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~- 282 (460)
|+|+|.+.+.++++++.++++++++||++++|+..+ .+++.++. ...+...|+.+..++.|. +.+...
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~-------~l~~~~~~---~~vvR~MPN~~~~~g~g~-t~~~~~~ 137 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLD-------DLLEITPG---LQVSRLIPSLTSAVGVGT-SLVAHAE 137 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC---CCEEEEeCccHHHHhhhc-EEEecCC
Confidence 999999999999999999888888999999999875 34555543 135788999988877663 322222
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
..+.+..+.++.+|+..|..+...++
T Consensus 138 ~~~~~~~~~v~~l~~~~G~~~~v~E~ 163 (277)
T PRK06928 138 TVNEANKSRLEETLSHFSHVMTIREE 163 (277)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEchh
Confidence 23567788999999999988777654
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=135.80 Aligned_cols=202 Identities=19% Similarity=0.202 Sum_probs=133.0
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----cCCCccCCCC--CCCCceEEeCCHHhh
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYFPEQ--KLPENVIATTDAKTA 196 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-----g~~~~~~~~~--~l~~~i~a~~~~~ea 196 (460)
|.+++||+|||+|.||+.||..|+++| ++|++|+++++.++.+++. +.... .+. ....++..+++.+++
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVYAP--LGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHhhh--cccHHHHhhceEEeCCHHHH
Confidence 344689999999999999999999999 8999999999887776652 21000 000 011235667788888
Q ss_pred cCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc
Q 012596 197 LLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274 (460)
Q Consensus 197 ~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g 274 (460)
+++||+||+|||... ...++.++.+.++++++|++.+.|+... .+.+.++... . .+..-|..+... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~-------~l~~~~~~~~-~-~ig~h~~~p~~~--~ 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT-------AIAQAVTRPE-R-FVGTHFFTPADV--I 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH-------HHHhhcCCcc-c-EEEEccCCCCcc--C
Confidence 899999999999764 6778888888888888888888877643 2333332210 0 111112211111 1
Q ss_pred CCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012596 275 LPTAMVVAS--KDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (460)
Q Consensus 275 ~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~-~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~ 351 (460)
... .++.+ .+.+.++.+.++|+..|..+... .|..|..+ +| +....++|+.
T Consensus 146 ~l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~---------------------nr----~~~~~~~Ea~ 199 (311)
T PRK06130 146 PLV-EVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIA---------------------NR----IQHALAREAI 199 (311)
T ss_pred ceE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHH---------------------HH----HHHHHHHHHH
Confidence 122 23333 26789999999999999876655 35443211 11 2235689999
Q ss_pred HHHHHcCCCcccccc
Q 012596 352 WLATKMGAKPATITG 366 (460)
Q Consensus 352 ~la~a~Gi~~~~~~~ 366 (460)
.++++.|++++++..
T Consensus 200 ~l~~~g~~~~~~id~ 214 (311)
T PRK06130 200 SLLEKGVASAEDIDE 214 (311)
T ss_pred HHHHcCCCCHHHHHH
Confidence 999999999877654
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-13 Score=129.22 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=120.7
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+||| +|+||+++|..|+++| ++|++|+|++++++.+.+.... .+.......++..+ +..++++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~~~~~~l~~~~~~--~~~~~g~~~~~~~~-~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDLEKAEEAAAKALE--ELGHGGSDIKVTGA-DNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCHHHHHHHHHHHHh--hccccCCCceEEEe-ChHHHHhcCCEEEEE
Confidence 6899997 8999999999999999 9999999999888777654211 00000011122223 456778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccch----------hhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc--
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT----------LRMMSQIIPQALRNPRQPFIALSGPSFALELMNK-- 274 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~----------~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g-- 274 (460)
+|.+.+.++++++.+.+. +++||+++||+..+. ....++.+++.++.. .-.+..-|....+...+
T Consensus 76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~ 152 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVD 152 (219)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCC
Confidence 999999999999887765 489999999998620 123346677766531 01222234333332221
Q ss_pred --CCeEEEEccCCHHHHHHHHHHHhcC-CceEEEcCChH
Q 012596 275 --LPTAMVVASKDRKLANAVQQLLASK-HLRISTSSDVT 310 (460)
Q Consensus 275 --~~~~i~i~~~d~~~~~~l~~lL~~~-g~~v~~~~Di~ 310 (460)
....+.++|.|.+..+.+.++.+.. ||..+..+.+.
T Consensus 153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~ 191 (219)
T TIGR01915 153 DEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLE 191 (219)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchh
Confidence 1223457777888889999999998 99988766653
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=128.20 Aligned_cols=163 Identities=23% Similarity=0.266 Sum_probs=107.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~~a 200 (460)
|||+|||+|.+|..+|..|++.| ++|+.+|.++++++.+++ |..+.+.++.. . ..++.++++.++++.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~-g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNN-GELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHT-TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhh-ccccccccchhhhhccccccccchhhhhhhhhhhcc
Confidence 79999999999999999999999 999999999999999887 43333434331 1 36788999999989999
Q ss_pred cEEEEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhh-hHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLR-MMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 201 DiVilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~-~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
|++|+|||.. .+.++++.|.+.++++++||.-++ +.+.+.+ .+..++++..+.. ..+.+.+.|.+..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST-vppGtt~~~~~~ile~~~~~~-~~f~la~~PErl~ 155 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST-VPPGTTEELLKPILEKRSGKK-EDFHLAYSPERLR 155 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS-SSTTHHHHHHHHHHHHHCCTT-TCEEEEE------
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE-EEEeeehHhhhhhhhhhcccc-cCCeEEECCCccC
Confidence 9999999853 367788999999998888777665 8888766 4455555543322 4677888888765
Q ss_pred HHh----ccCCeEEEEccCCHHHHHHHHHH
Q 012596 270 ELM----NKLPTAMVVASKDRKLANAVQQL 295 (460)
Q Consensus 270 e~~----~g~~~~i~i~~~d~~~~~~l~~l 295 (460)
+.. ...+..++.|..+....++++++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 321 12455667777666666677664
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-13 Score=130.16 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=112.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.||++||..|.++|...+|++|+|+++.++.+.+.|.. ....+++++. ++|+||+||
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~-~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV-------------DEIVSFEELK-KCDVIFLAI 66 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC-------------cccCCHHHHh-cCCEEEEeC
Confidence 58999999999999999999998434799999999888777665431 1123566654 599999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEE-----ECcccHH-HHhccCCeEEEE
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-----SGPSFAL-ELMNKLPTAMVV 281 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~-----~gP~~a~-e~~~g~~~~i~i 281 (460)
|...+.+++.++.+ ++++++|+++.. .. ..+.+.+.+..+...+..... .||..+. ....|....++-
T Consensus 67 p~~~~~~~~~~l~~-l~~~~iv~d~gs--~k---~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~ 140 (275)
T PRK08507 67 PVDAIIEILPKLLD-IKENTTIIDLGS--TK---AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCD 140 (275)
T ss_pred cHHHHHHHHHHHhc-cCCCCEEEECcc--ch---HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEec
Confidence 99999999999988 888998888532 21 123334433221111111011 2232222 123444322211
Q ss_pred c-cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHH
Q 012596 282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN 320 (460)
Q Consensus 282 ~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkN 320 (460)
. +.+.+.++.++++|+..|.++...+.-.+.+..+++.|
T Consensus 141 ~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~ 180 (275)
T PRK08507 141 VEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISH 180 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhH
Confidence 1 24567889999999999999888776555555554444
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=126.78 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=112.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..|||+|||+|+||++++..|.+++. ..++++++|+++.. + +....++.+++.++|+|
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~--------------~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P--------------FVYLQSNEELAKTCDII 61 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C--------------eEEeCChHHHHHhCCEE
Confidence 34799999999999999999998862 23588888876421 1 12345677777899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~- 282 (460)
|+|+|++++.++++++.+++.+ ..||++.+|+..+ .+++.++.. ...+...|+++.....|. +.+...
T Consensus 62 ilavkp~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~-------~l~~~~~~~--~~vvr~mPn~p~~~g~g~-t~i~~~~ 130 (260)
T PTZ00431 62 VLAVKPDLAGKVLLEIKPYLGS-KLLISICGGLNLK-------TLEEMVGVE--AKIVRVMPNTPSLVGQGS-LVFCANN 130 (260)
T ss_pred EEEeCHHHHHHHHHHHHhhccC-CEEEEEeCCccHH-------HHHHHcCCC--CeEEEECCCchhHhccee-EEEEeCC
Confidence 9999999999999999988764 6789999999864 344554431 124678999987765542 222222
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
..+.+..+.++++|+..|..+...++
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~~v~E~ 156 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQEIKEK 156 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEChH
Confidence 23567789999999999998887655
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.8e-13 Score=130.85 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=112.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.||+.+|..|.++| ++|++|+++++..+.+.+.|... ...++. ++++++|+||+|+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERGLVD------------EASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCcc------------cccCCH-hHhcCCCEEEEcC
Confidence 68999999999999999999998 89999999998888777655310 122344 4578999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECccc-----HH-HHhccCCeEEEE
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF-----AL-ELMNKLPTAMVV 281 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~-----a~-e~~~g~~~~i~i 281 (460)
|...+.++++++.+.++++++|++++ ++.... .+.+.+... .++....+.|+.. +. .+..|....++.
T Consensus 66 p~~~~~~~~~~l~~~l~~~~ii~d~~-Svk~~~----~~~~~~~~~-~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p 139 (279)
T PRK07417 66 PIGLLLPPSEQLIPALPPEAIVTDVG-SVKAPI----VEAWEKLHP-RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP 139 (279)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEeCc-chHHHH----HHHHHHhhC-CceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence 99998899999999888887776655 343321 122222211 1111122334331 11 123444433222
Q ss_pred c-cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHH
Q 012596 282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALK 319 (460)
Q Consensus 282 ~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalk 319 (460)
. ..+.+.++.++++++..|.++...+...+....++..
T Consensus 140 ~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~s 178 (279)
T PRK07417 140 TENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALIS 178 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHc
Confidence 2 3467888999999999998887666544444444333
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=138.80 Aligned_cols=146 Identities=20% Similarity=0.279 Sum_probs=110.0
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCC---cccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDG---RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|+|+ |.++++||+.+... ...| ..++.++.+.| +|.+... +.++ ..|+|||||+|.||.
T Consensus 90 ~~gI~v~n~~~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~----~w~~~~~---~~~l--~g~~VgIIG~G~IG~ 159 (330)
T PRK12480 90 KHNIVISNVPS-YSPETIAEYSVSIALQLVRRFPDIERRVQAHDF----TWQAEIM---SKPV--KNMTVAIIGTGRIGA 159 (330)
T ss_pred HCCCEEEeCCC-CChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCc----ccccccC---cccc--CCCEEEEECCCHHHH
Confidence 57899999999 99999999999855 3333 34555555555 2433211 2234 467999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl-~~ 218 (460)
.+|..|...| ++|++|+++++..... +...+++++++++||+|++++|.+. +..++ ++
T Consensus 160 ~vA~~L~~~G--~~V~~~d~~~~~~~~~------------------~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~ 219 (330)
T PRK12480 160 ATAKIYAGFG--ATITAYDAYPNKDLDF------------------LTYKDSVKEAIKDADIISLHVPANKESYHLFDKA 219 (330)
T ss_pred HHHHHHHhCC--CEEEEEeCChhHhhhh------------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHH
Confidence 9999999888 9999999987532211 1123478899999999999999764 55544 56
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+.+.+++++++|++++|-..++
T Consensus 220 ~l~~mk~gavlIN~aRG~~vd~ 241 (330)
T PRK12480 220 MFDHVKKGAILVNAARGAVINT 241 (330)
T ss_pred HHhcCCCCcEEEEcCCccccCH
Confidence 7788999999999999988765
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=120.37 Aligned_cols=196 Identities=10% Similarity=0.093 Sum_probs=131.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDiVi 204 (460)
|+|+.||+|.||..|..+|.+.| |+|+.||++++.++++...|. ..++++++. +....+|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g--hdvV~yD~n~~av~~~~~~ga--------------~~a~sl~el~~~L~~pr~vW 64 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG--HDVVGYDVNQTAVEELKDEGA--------------TGAASLDELVAKLSAPRIVW 64 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC--CeEEEEcCCHHHHHHHHhcCC--------------ccccCHHHHHHhcCCCcEEE
Confidence 78999999999999999999999 999999999999999988763 222344443 45679999
Q ss_pred Eccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 205 laVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
++||.. .+..+++++++.+.++.+||+-.|.-..++.+.. +.+.++ |-.+.++....|+- +......++++
T Consensus 65 lMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~-~~l~~k-gi~flD~GTSGG~~-----G~~~G~~lMiG- 136 (300)
T COG1023 65 LMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRA-KLLAEK-GIHFLDVGTSGGVW-----GAERGYCLMIG- 136 (300)
T ss_pred EEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHH-HHHHhc-CCeEEeccCCCCch-----hhhcCceEEec-
Confidence 999986 7899999999999999999998776655543222 222222 22222222222222 12223344555
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
++.+.++++.++|+..... ++ | ..+.-.+|...=+|...|-.---+.++++|...+.++...|.
T Consensus 137 G~~~a~~~~~pif~~lA~g----e~--G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~ 200 (300)
T COG1023 137 GDEEAVERLEPIFKALAPG----ED--G--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDY 200 (300)
T ss_pred CcHHHHHHHHHHHHhhCcC----cC--c--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4889999999999953221 10 0 000001123333344456666667889999999999877653
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-13 Score=130.81 Aligned_cols=167 Identities=13% Similarity=0.176 Sum_probs=112.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhhc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTAL 197 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea~ 197 (460)
+||+|||+|.||..+|..|+++| ++|++||++++.++++.+. +......... ....++..++++++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 68999999999999999999999 9999999999988776532 1100000000 0123466778888889
Q ss_pred CCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhc
Q 012596 198 LGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMN 273 (460)
Q Consensus 198 ~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~~~ 273 (460)
++||+||.|+|... ...++.++.+.+++++++++.+.++.+.. +.+.+... .....++ .|.+..
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~-------l~~~~~~~~r~~g~h~~-~Pv~~~---- 147 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE-------IASFTKRPERVIAMHFF-NPVHKM---- 147 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH-------HHhhcCCcccEEEEecC-CCcccC----
Confidence 99999999999764 34567788888888887755444466642 22222211 0112223 454322
Q ss_pred cCCeEEEEccC---CHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 274 KLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 274 g~~~~i~i~~~---d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
+ .+.+.++ +.+.+++++++++..|..+....|..|
T Consensus 148 --~-Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G 185 (288)
T PRK09260 148 --K-LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG 185 (288)
T ss_pred --c-eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc
Confidence 2 2334443 789999999999999988877777544
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=138.38 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=118.0
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
++.++.|+|+|+ |+|+++||...... +.+...+|..|.+.|.. |. ......+.++ ..+++||||+|.+|
T Consensus 86 ~~~gI~Vtnvp~-~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~---~~-~~~~~~~~~l--~gktvGIiG~GrIG 158 (324)
T COG1052 86 KERGITVTNVPG-YSTEAVAEHAVALILALARRIHEGDRRVREGNWSL---SG-GPDPLLGFDL--RGKTLGIIGLGRIG 158 (324)
T ss_pred HHCCcEEEeCCC-CCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccc---cC-CcccccccCC--CCCEEEEECCCHHH
Confidence 467799999999 99999999998844 77778888888888844 11 1111223345 36899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE- 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~- 217 (460)
.++|+++. |++.+|..|+|.+. ....+.+ + .... +++++++.+|+|++.+|.+ .+..++.
T Consensus 159 ~avA~r~~--~Fgm~v~y~~~~~~--~~~~~~~-~------------~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~ 220 (324)
T COG1052 159 QAVARRLK--GFGMKVLYYDRSPN--PEAEKEL-G------------ARYV-DLDELLAESDIISLHCPLTPETRHLINA 220 (324)
T ss_pred HHHHHHHh--cCCCEEEEECCCCC--hHHHhhc-C------------ceec-cHHHHHHhCCEEEEeCCCChHHhhhcCH
Confidence 99999999 56699999999874 1111111 1 2233 4889999999999999964 5777774
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
+....++++.++|+++.|-..++ ..+.+.|+
T Consensus 221 ~~l~~mk~ga~lVNtaRG~~VDe-~ALi~AL~ 251 (324)
T COG1052 221 EELAKMKPGAILVNTARGGLVDE-QALIDALK 251 (324)
T ss_pred HHHHhCCCCeEEEECCCccccCH-HHHHHHHH
Confidence 56777899999999999977764 23334443
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-12 Score=124.32 Aligned_cols=190 Identities=15% Similarity=0.146 Sum_probs=128.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|||+|+||.+|+..|.+.|.. .++.+|+|++++.+.+.+... .+..+++..++++++|+||+|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~------------~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP------------KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC------------CceEeCCHHHHHHhCCEEEEE
Confidence 5899999999999999999998731 246899999988887766421 134556788888899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~ 286 (460)
+|.+.+.++++++. +.+++++|++..|+..+ .+++.++.. ...+...|........+ .+ .+...
T Consensus 69 v~p~~~~~vl~~l~--~~~~~~vis~~ag~~~~-------~l~~~~~~~--~~~~r~~P~~~~a~~~g-~t--~~~~~-- 132 (258)
T PRK06476 69 VRPQIAEEVLRALR--FRPGQTVISVIAATDRA-------ALLEWIGHD--VKLVRAIPLPFVAERKG-VT--AIYPP-- 132 (258)
T ss_pred eCHHHHHHHHHHhc--cCCCCEEEEECCCCCHH-------HHHHHhCCC--CCEEEECCCChhhhCCC-Ce--EecCC--
Confidence 99988999988773 46788999988777654 344444321 23466778766543332 22 23322
Q ss_pred HHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
.+.++++|+..|-.+...+. + .++.+...++ ..+.+...+.|+...+++.|++++...+
T Consensus 133 --~~~~~~l~~~lG~~~~~~~e-------~-~~d~~~a~~s-----------~~a~~~~~~~~~~~~~~~~Gl~~~~a~~ 191 (258)
T PRK06476 133 --DPFVAALFDALGTAVECDSE-------E-EYDLLAAASA-----------LMATYFGILETATGWLEEQGLKRQKARA 191 (258)
T ss_pred --HHHHHHHHHhcCCcEEECCh-------H-hccceeehhc-----------cHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 25789999998877765322 1 1222211111 1222335789999999999999876554
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-13 Score=110.34 Aligned_cols=93 Identities=26% Similarity=0.338 Sum_probs=76.6
Q ss_pred eEEEECcchHHHHHHHHHHhcC-CCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEEEE
Q 012596 129 KVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G-~~~~V~v~-~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil 205 (460)
||+|||+|+||.+++..|.++| ..++|.++ +|++++.+++.++.. +.+.. +..++++.+|+||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------------VQATADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------------TEEESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------------cccccCChHHhhccCCEEEE
Confidence 7999999999999999999987 24689955 999999988877531 23444 68888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
|||.+.+.+++.++ +...+++++|++.+|
T Consensus 68 av~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVKPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S-GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EECHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999999 666789999999876
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=119.98 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=116.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||+|+|+|+|+||+++|.+|+++| |+|++-+|+.+ ..+...+. ..+ .+.. .+++++.+.+|+||+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag--~eV~igs~r~~~~~~a~a~~-l~~----------~i~~-~~~~dA~~~aDVVvL 66 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG--HEVIIGSSRGPKALAAAAAA-LGP----------LITG-GSNEDAAALADVVVL 66 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC--CeEEEecCCChhHHHHHHHh-hcc----------cccc-CChHHHHhcCCEEEE
Confidence 689999999999999999999999 99999966554 44444332 110 1222 256778899999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc----c------hhhhHHHHHHHHhCCCCCCEEEEECcc--cHHHHh-
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL----N------TLRMMSQIIPQALRNPRQPFIALSGPS--FALELM- 272 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~----~------~~~~l~e~l~~~lg~~~~~~~v~~gP~--~a~e~~- 272 (460)
+||..++.+++.++...+. ++++|+++|.+.+ . .....++.+++.++... ++.+-. .+..+.
T Consensus 67 AVP~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ak----VVkAFn~i~a~~l~~ 141 (211)
T COG2085 67 AVPFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAK----VVKAFNTIPAAVLAD 141 (211)
T ss_pred eccHHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcc----hhhhhcccCHHHhcc
Confidence 9999999999999998876 8999999997421 1 12345678888776531 111111 111111
Q ss_pred ---ccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCCh
Q 012596 273 ---NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDV 309 (460)
Q Consensus 273 ---~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di 309 (460)
.+....+.+++.|.++.+.+.++.+..|++....+.+
T Consensus 142 ~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L 181 (211)
T COG2085 142 LAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPL 181 (211)
T ss_pred CCCcCCceeEEEecCcHHHHHHHHHHHHhcCcceeecccc
Confidence 1123456788889999999999999999998765543
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-12 Score=132.33 Aligned_cols=163 Identities=15% Similarity=0.242 Sum_probs=112.9
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+||| +|.||.++|..|.++| ++|++|+|+++.+..+.... ++..+++..++++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G--~~V~v~~r~~~~~~~~a~~~-------------gv~~~~~~~e~~~~aDvVIla 65 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG--FEVIVTGRDPKKGKEVAKEL-------------GVEYANDNIDAAKDADIVIIS 65 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC--CEEEEEECChHHHHHHHHHc-------------CCeeccCHHHHhccCCEEEEe
Confidence 6899998 8999999999999999 89999999987765554431 123455777788999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEEc-c
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVA-S 283 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~~~g~~~~i~i~-~ 283 (460)
+|...+.++++++.+.++++++|+++++ +-. .+.+.+.+.++.. .+....+.||..+ ...|....++.+ +
T Consensus 66 vp~~~~~~vl~~l~~~l~~~~iViDvsS-vK~----~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p~~~ 138 (437)
T PRK08655 66 VPINVTEDVIKEVAPHVKEGSLLMDVTS-VKE----RPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTPTEK 138 (437)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEEccc-ccH----HHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEecCCC
Confidence 9999999999999999999999999874 211 2234444444321 1111123345432 223433221111 1
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
.+.+.++.++++|+..|.+++..+.-.+.
T Consensus 139 ~~~~~~~~v~~ll~~~G~~v~~~~~e~HD 167 (437)
T PRK08655 139 RSNPWFDKVKNFLEKEGARVIVTSPEEHD 167 (437)
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCHHHHH
Confidence 35788899999999999998876654433
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-13 Score=120.24 Aligned_cols=115 Identities=18% Similarity=0.305 Sum_probs=87.7
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~ 209 (460)
|+|+|+|+||+.+|..|+++| ++|++++|++ +.+.++++|.......+...........+..+..+.+|+||+|||+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCC--CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 789999999999999999998 9999999999 8888988876433221111111112223332345789999999999
Q ss_pred hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 210 QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 210 ~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
.+++++++.+++++.+++.|+.++||++.. +.+.+.++
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~------~~l~~~~~ 115 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNE------EVLAEYFP 115 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSSSSHH------HHHHCHST
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCCCCcH------HHHHHHcC
Confidence 999999999999999999999999999875 45555554
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-12 Score=124.79 Aligned_cols=198 Identities=21% Similarity=0.246 Sum_probs=126.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc--CCCccCCCCCC---------CCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH--CNCRYFPEQKL---------PENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g--~~~~~~~~~~l---------~~~i~a~~~~~ 194 (460)
.++||+|||+|.||..+|..|+++| ++|++||++++.++++.+.- ....+.++..+ ..++..+++++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 3579999999999999999999999 99999999998776654320 00011111111 23567788998
Q ss_pred hhcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEE--EEECcccHHH
Q 012596 195 TALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALE 270 (460)
Q Consensus 195 ea~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~--v~~gP~~a~e 270 (460)
+++++||+||.|+|.. ....+++++.+.++++++|++.+.++.+. + +.+.+..+. .+. ....|.+
T Consensus 80 ~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~------~-~~~~~~~~~-r~vg~Hf~~p~~--- 148 (287)
T PRK08293 80 EAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS------Q-FAEATGRPE-KFLALHFANEIW--- 148 (287)
T ss_pred HHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH------H-HHhhcCCcc-cEEEEcCCCCCC---
Confidence 8889999999999965 46778889988888888876655555442 2 222222110 011 1122221
Q ss_pred HhccCCeEEEE--ccCCHHHHHHHHHHHhcCCceEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH
Q 012596 271 LMNKLPTAMVV--ASKDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGC 347 (460)
Q Consensus 271 ~~~g~~~~i~i--~~~d~~~~~~l~~lL~~~g~~v~~~-~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~ 347 (460)
.. +...++ ...+.+.++.+.+++...|...... .|..|.. ...+....+
T Consensus 149 --~~-~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi-------------------------~nRi~~~~~ 200 (287)
T PRK08293 149 --KN-NTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYI-------------------------LNSLLVPFL 200 (287)
T ss_pred --cC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHh-------------------------HHHHHHHHH
Confidence 11 111222 2356789999999999999775543 4543321 123445677
Q ss_pred HHHHHHHHHcCCCcccc
Q 012596 348 SEIRWLATKMGAKPATI 364 (460)
Q Consensus 348 ~E~~~la~a~Gi~~~~~ 364 (460)
+|++.+.+.--.+++++
T Consensus 201 ~ea~~l~~~g~a~~~~i 217 (287)
T PRK08293 201 SAALALWAKGVADPETI 217 (287)
T ss_pred HHHHHHHHcCCCCHHHH
Confidence 88888876644556544
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-11 Score=121.25 Aligned_cols=170 Identities=18% Similarity=0.260 Sum_probs=108.5
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HhhcCCCccCCCCCCCCceEEeCC
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTD 192 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l-----------~~~g~~~~~~~~~~l~~~i~a~~~ 192 (460)
|+.++||+|||+|.||..||..|+.+| ++|++||++++.++.. .+.|.-..... ......+.++++
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~ 77 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEA-DATLGRIRCTTN 77 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHhceEeeCC
Confidence 445689999999999999999999999 9999999998876532 22221000000 000112445556
Q ss_pred HHhhcCCCcEEEEccch--hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccH
Q 012596 193 AKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFA 268 (460)
Q Consensus 193 ~~ea~~~aDiVilaVp~--~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a 268 (460)
.+ ++++||+||.|||. .....++.++.+.++++++|++.+.|+.+.. +.+.++.. ...+.+...|..
T Consensus 78 ~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~-------l~~~~~~~~r~~g~h~~~pp~~- 148 (295)
T PLN02545 78 LE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR-------LASATQRPQQVIGMHFMNPPPI- 148 (295)
T ss_pred HH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCcceEEEeccCCccc-
Confidence 54 57999999999994 4456677888888888988887777776542 23322211 011112222221
Q ss_pred HHHhccCCeEEEEc--cCCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 269 LELMNKLPTAMVVA--SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 269 ~e~~~g~~~~i~i~--~~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
+.... ++. ..+.+.+++++++|+..|..+....|..|
T Consensus 149 -----~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g 187 (295)
T PLN02545 149 -----MKLVE-IIRGADTSDEVFDATKALAERFGKTVVCSQDYPG 187 (295)
T ss_pred -----CceEE-EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc
Confidence 11122 222 24788999999999999988877776543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-11 Score=120.84 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=125.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~-----------l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
.++||+|||+|.||..+|..|+++| ++|++||++++.+++ +.+.|..... .......++..+++.+
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~l~~~~~~~ 78 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA-DKEAALARITGTTDLD 78 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHH
Confidence 3578999999999999999999999 899999999987642 2233210000 0000112466677776
Q ss_pred hhcCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHh
Q 012596 195 TALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELM 272 (460)
Q Consensus 195 ea~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~ 272 (460)
+ +++||+||+|+|.+. ..+++.++.++++++++|++.+.|+... .+.+.++... -.+..-|..+..+.
T Consensus 79 ~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~-------~la~~~~~~~--r~ig~h~~~P~~~~ 148 (282)
T PRK05808 79 D-LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT-------ELAAATKRPD--KVIGMHFFNPVPVM 148 (282)
T ss_pred H-hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHHhhCCCc--ceEEeeccCCcccC
Confidence 5 689999999998644 3688899999999999988888777654 2333333210 11222222221111
Q ss_pred ccCCeEEEE-ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012596 273 NKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (460)
Q Consensus 273 ~g~~~~i~i-~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~ 351 (460)
.+ ..++. .+.+.+..+.+.++|+..|..+....|..|.. ...++...++|+.
T Consensus 149 ~~--vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~i-------------------------~~Ri~~~~~~ea~ 201 (282)
T PRK05808 149 KL--VEIIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFV-------------------------VNRILIPMINEAI 201 (282)
T ss_pred cc--EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccChH-------------------------HHHHHHHHHHHHH
Confidence 11 11121 23568899999999999998887767654321 1234556778888
Q ss_pred HHHHHcCCCccc
Q 012596 352 WLATKMGAKPAT 363 (460)
Q Consensus 352 ~la~a~Gi~~~~ 363 (460)
.+.+.--.++++
T Consensus 202 ~~~~~gv~~~~d 213 (282)
T PRK05808 202 FVLAEGVATAED 213 (282)
T ss_pred HHHHhCCCCHHH
Confidence 877543234443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-12 Score=128.31 Aligned_cols=176 Identities=15% Similarity=0.209 Sum_probs=118.7
Q ss_pred hhhhhhhcccceeeeecccc-chhccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccC
Q 012596 101 VKVAWEKLVRWSRTWRSKAK-TDILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF 178 (460)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~ 178 (460)
.+.-|...+++++....+.+ .+++..+++|+||| +|.||+.+|..|.++| ++|++|+++..
T Consensus 71 ~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G--~~V~~~d~~~~--------------- 133 (374)
T PRK11199 71 IEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSG--YQVRILEQDDW--------------- 133 (374)
T ss_pred HHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCC--CeEEEeCCCcc---------------
Confidence 44456566666665555443 33444568999999 9999999999999999 99999998631
Q ss_pred CCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC
Q 012596 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP 258 (460)
Q Consensus 179 ~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~ 258 (460)
+++++++.+||+||+|+|.....++++++.+ ++++++|++++. +-. .+.+.+.+..+..++.
T Consensus 134 ------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~S-vK~----~~~~~~~~~~~~~fvg 195 (374)
T PRK11199 134 ------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLTS-VKN----APLQAMLAAHSGPVLG 195 (374)
T ss_pred ------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECCC-ccH----HHHHHHHHhCCCCEEe
Confidence 1455667899999999999988899999988 889999999853 221 1222333333222222
Q ss_pred EEEEECcccHHHHhccCCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCChHHHHHH
Q 012596 259 FIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 259 ~~v~~gP~~a~e~~~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
...+.||.... ..+. .+++.+ .+.+.++.+.+++...|.++...+.-.+....
T Consensus 196 ~HPm~G~~~~~--~~~~--~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~ 249 (374)
T PRK11199 196 LHPMFGPDVGS--LAKQ--VVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNM 249 (374)
T ss_pred eCCCCCCCCcc--cCCC--EEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHH
Confidence 23455554321 1222 234443 35678899999999999998887655544433
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=122.45 Aligned_cols=171 Identities=15% Similarity=0.191 Sum_probs=111.1
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCC-ccCCCCCC--------CCceEEeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNC-RYFPEQKL--------PENVIATTDA 193 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~-~~~~~~~l--------~~~i~a~~~~ 193 (460)
|+..+||+|||+|.||..||..|+++| ++|++||++++.++.+.+. ..+. .+.+...+ ..++..++++
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 78 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL 78 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH
Confidence 445689999999999999999999999 9999999999877664321 0000 00000001 1346677777
Q ss_pred HhhcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC--CCEEEEECcccHH
Q 012596 194 KTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFAL 269 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~--~~~~v~~gP~~a~ 269 (460)
++ +++||+||+|+|.. ....++.++.+.+++++++++.+.++.+. .+.+.+..+. ....+ .-|....
T Consensus 79 ~~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s-------~la~~~~~~~r~~g~h~-~~p~~~~ 149 (292)
T PRK07530 79 ED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT-------RLASATDRPERFIGIHF-MNPVPVM 149 (292)
T ss_pred HH-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCcccEEEeec-cCCcccC
Confidence 54 78999999999974 34667888989999999988766666543 1333222110 01111 1232211
Q ss_pred HHhccCCeEEEE-ccCCHHHHHHHHHHHhcCCceEEEcCChH
Q 012596 270 ELMNKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVT 310 (460)
Q Consensus 270 e~~~g~~~~i~i-~~~d~~~~~~l~~lL~~~g~~v~~~~Di~ 310 (460)
....++. .+.+.+.++++.++|+..|..+.+..|..
T Consensus 150 -----~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p 186 (292)
T PRK07530 150 -----KLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP 186 (292)
T ss_pred -----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Confidence 1111222 24678999999999999998877777754
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=128.21 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=109.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh------cCCC----ccCCCC---CCCCceEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK------HCNC----RYFPEQ---KLPENVIATTD 192 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~------g~~~----~~~~~~---~l~~~i~a~~~ 192 (460)
+..||+|||+|.||+.+|..|+++| ++|++||++++.++...+. +... ...... .+..++..+++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 3578999999999999999999999 8999999999877643221 1100 000000 01223556666
Q ss_pred HHhhcCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC-EEEEECcccHH
Q 012596 193 AKTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFAL 269 (460)
Q Consensus 193 ~~ea~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~-~~v~~gP~~a~ 269 (460)
. +++++||+||+|+|.+. ...++.++.+.+++++++++.++|+... .+.+.+...... .....-|....
T Consensus 80 ~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~-------~la~~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 80 Y-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA-------EIATALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred H-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHH-------HHHhhcCCcccEEEEecCCCcccC
Confidence 6 46799999999999764 5778888988899999999888887653 223332221000 01111222111
Q ss_pred HHhccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 270 ELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 270 e~~~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
. ...++-+ ..+.+.++++.++++..|..+....|..|
T Consensus 152 ~-----~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pg 189 (291)
T PRK06035 152 K-----LIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPG 189 (291)
T ss_pred c-----cEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 0 0111111 13678899999999999988887777544
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=132.77 Aligned_cols=148 Identities=22% Similarity=0.261 Sum_probs=107.1
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCCc---ccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDGR---DRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|+|. |.++++||+.+... ...|+ .++.++.+.| .|.+... +.++ ..++|+|||+|.||.
T Consensus 90 ~~gi~v~n~~~-~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~----~~~~~~~---~~~l--~g~~VgIIG~G~IG~ 159 (332)
T PRK08605 90 KYNLIISNVPS-YSPESIAEFTVTQAINLVRHFNQIQTKVREHDF----RWEPPIL---SRSI--KDLKVAVIGTGRIGL 159 (332)
T ss_pred HCCCEEEeCCC-CChHHHHHHHHHHHHHHhcChHHHHHHHHhCCc----ccccccc---ccee--CCCEEEEECCCHHHH
Confidence 57899999999 99999999999855 44444 4444555555 2433221 2334 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl-~~ 218 (460)
.+|.+|++ +++.+|.+||++.... ... + +...+++++++++||+|++++|.+. .+.++ .+
T Consensus 160 ~vA~~L~~-~~g~~V~~~d~~~~~~--~~~-~--------------~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~ 221 (332)
T PRK08605 160 AVAKIFAK-GYGSDVVAYDPFPNAK--AAT-Y--------------VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNAD 221 (332)
T ss_pred HHHHHHHh-cCCCEEEEECCCccHh--HHh-h--------------ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHH
Confidence 99999954 3338999999876432 111 1 1233578899999999999999765 44444 34
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
..+.+++++++|++++|...++
T Consensus 222 ~l~~mk~gailIN~sRG~~vd~ 243 (332)
T PRK08605 222 LFKHFKKGAVFVNCARGSLVDT 243 (332)
T ss_pred HHhcCCCCcEEEECCCCcccCH
Confidence 6777899999999999988765
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=121.57 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=111.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||+|||+|.||..+|..|.+.|..++|++|+|+++..+.+.+.|.. .....+.+++++++|+||+|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~------------~~~~~~~~~~~~~aDvViia 73 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG------------DRVTTSAAEAVKGADLVILC 73 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC------------ceecCCHHHHhcCCCEEEEC
Confidence 479999999999999999999988334899999999888777665431 12334666778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEE----------CcccHH-HHhccC
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS----------GPSFAL-ELMNKL 275 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~----------gP~~a~-e~~~g~ 275 (460)
+|.....++++++.+.++++++|+++. ++... +.+.+.+.++. ...++. ||..+. ++..|.
T Consensus 74 vp~~~~~~v~~~l~~~l~~~~iv~dvg-s~k~~----~~~~~~~~~~~---~~~~v~~hPm~g~e~~G~~~a~~~l~~g~ 145 (307)
T PRK07502 74 VPVGASGAVAAEIAPHLKPGAIVTDVG-SVKAS----VIAAMAPHLPE---GVHFIPGHPLAGTEHSGPDAGFAELFENR 145 (307)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEeCc-cchHH----HHHHHHHhCCC---CCeEEeCCCCCCCcccchhhcCHHHHCCC
Confidence 999988899999988888888777653 23322 12223232221 111222 222211 233443
Q ss_pred CeEEEE-ccCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 276 PTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 276 ~~~i~i-~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
...+.. .+.+.+.++.+.++|+..|.++...+.-...
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD 183 (307)
T PRK07502 146 WCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHD 183 (307)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHh
Confidence 332222 2456788999999999999888775543333
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-11 Score=118.79 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=109.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi 204 (460)
++|||+|||+|.||..+|..|.+.| ++|++|++++.. +...+.| +...++.++++ .++|+||
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G--~~V~~~d~~~~~-~~a~~~g--------------v~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG--HTVLATSRSDYS-DIAAELG--------------VSFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECccHH-HHHHHcC--------------CeeeCCHHHHhhCCCCEEE
Confidence 4689999999999999999999988 899999998632 2222223 12345677765 4799999
Q ss_pred EccchhcHHHHHHHh-hhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH----hccCCeEE
Q 012596 205 HAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL----MNKLPTAM 279 (460)
Q Consensus 205 laVp~~~~~~vl~~i-~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~----~~g~~~~i 279 (460)
+|||...+.++++++ .+.++++++|+++..+-. .+.+.+.+.++.. . ..+..-|.++.+. ..+.. +
T Consensus 98 lavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~-----~~~~~~~~~l~~~-~-~~V~~HPmaG~e~~~~~~~~~~--~ 168 (304)
T PLN02256 98 LCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKE-----FPKNLLLQVLPEE-F-DILCTHPMFGPESGKGGWAGLP--F 168 (304)
T ss_pred EecCHHHHHHHHHhhhhhccCCCCEEEecCCchH-----HHHHHHHHhCCCC-C-eEEecCCCCCCCCCccccCCCe--E
Confidence 999999999999998 677888999999875211 2223455544321 1 1122233333321 22222 1
Q ss_pred EEc-------cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHH
Q 012596 280 VVA-------SKDRKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 280 ~i~-------~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
++. ..+.+.++.++++++..|.++...+--.+++..
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~v 211 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYA 211 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHH
Confidence 222 235678899999999999988876554555443
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-12 Score=129.22 Aligned_cols=151 Identities=11% Similarity=0.131 Sum_probs=109.9
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCC---cccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDG---RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|. +..+++||+.+... ...| ..++.++.+.|.. ........++ ..++|||||+|+||.
T Consensus 135 ~~gI~V~n~~g-~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~------~~~~~~~~~L--~gktVGIvG~G~IG~ 205 (385)
T PRK07574 135 EHGITVAEVTG-SNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNI------ADCVSRSYDL--EGMTVGIVGAGRIGL 205 (385)
T ss_pred HCCcEEEcCCC-CchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCc------ccccccceec--CCCEEEEECCCHHHH
Confidence 56899999998 88999999998865 4444 4455556665532 1111112234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-H
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-G 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~-~ 218 (460)
.+|++|..-| ++|.+|+|.....+.....+ +....+++++++.||+|++++|.+ .++.++. +
T Consensus 206 ~vA~~l~~fG--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~ 269 (385)
T PRK07574 206 AVLRRLKPFD--VKLHYTDRHRLPEEVEQELG--------------LTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDAD 269 (385)
T ss_pred HHHHHHHhCC--CEEEEECCCCCchhhHhhcC--------------ceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHH
Confidence 9999999777 99999999753222111211 233357899999999999999954 5778774 5
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 270 ~l~~mk~ga~lIN~aRG~iVDe 291 (385)
T PRK07574 270 VLSRMKRGSYLVNTARGKIVDR 291 (385)
T ss_pred HHhcCCCCcEEEECCCCchhhH
Confidence 6778999999999999877654
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-11 Score=119.14 Aligned_cols=150 Identities=14% Similarity=0.142 Sum_probs=103.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l-~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|+|||+|+||.++|.+|.+.| ++|++++++..+.... .+.| +... +.+++++.||+|+
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG--~~Vvv~~r~~~~s~~~A~~~G--------------~~~~-s~~eaa~~ADVVv 78 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSG--VDVVVGLREGSKSWKKAEADG--------------FEVL-TVAEAAKWADVIM 78 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCC--CEEEEEECCchhhHHHHHHCC--------------CeeC-CHHHHHhcCCEEE
Confidence 3589999999999999999999999 8999888875443332 2323 2222 7788899999999
Q ss_pred EccchhcHHHHH-HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-------HhccCC
Q 012596 205 HAMPVQFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-------LMNKLP 276 (460)
Q Consensus 205 laVp~~~~~~vl-~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e-------~~~g~~ 276 (460)
++||.....+++ +++.+.++++++| ++..|+.... .....+. ..+ .+...|..+.. .+.|.+
T Consensus 79 LaVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~-------~~~~p~~-~~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~ 148 (330)
T PRK05479 79 ILLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF-------GQIVPPA-DVD-VIMVAPKGPGHLVRREYEEGGGVP 148 (330)
T ss_pred EcCCHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh-------ceeccCC-CCc-EEEeCCCCCchhhhhhhhcCCCce
Confidence 999998888888 7799999988877 6777877642 2222222 122 34555766554 334444
Q ss_pred eEEEEcc-CCHHHHHHHHHHHhcCCce
Q 012596 277 TAMVVAS-KDRKLANAVQQLLASKHLR 302 (460)
Q Consensus 277 ~~i~i~~-~d~~~~~~l~~lL~~~g~~ 302 (460)
..+.+.. .+.+..+.+..++...|..
T Consensus 149 ~l~av~~d~t~~a~~~a~~l~~aiG~~ 175 (330)
T PRK05479 149 CLIAVHQDASGNAKDLALAYAKGIGGT 175 (330)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 3221221 2367788889999877644
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-12 Score=128.65 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=112.2
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcc-cceeeeeccccchhccCCCeEEEECcchHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLV-RWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
+.++.++|+|. |..+++||+..... +.....++.++.+.|.+.. .|...+ ..+.++ ..++|||||+|+||
T Consensus 88 ~~gI~v~n~~g-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~--~~g~~L--~gktvgIiG~G~IG 162 (333)
T PRK13243 88 RRGIYVTNTPG-VLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLM--FLGYDV--YGKTIGIIGFGRIG 162 (333)
T ss_pred HcCCEEEECCC-CChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccccc--ccccCC--CCCEEEEECcCHHH
Confidence 56899999998 99999999998854 4455567777788785311 121111 112334 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~ 217 (460)
..+|++|...| ++|.+|+|+..... ....+ +. ..+++++++.||+|++++|.+ .+..++ .
T Consensus 163 ~~vA~~l~~~G--~~V~~~d~~~~~~~-~~~~~--------------~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~ 224 (333)
T PRK13243 163 QAVARRAKGFG--MRILYYSRTRKPEA-EKELG--------------AE-YRPLEELLRESDFVSLHVPLTKETYHMINE 224 (333)
T ss_pred HHHHHHHHHCC--CEEEEECCCCChhh-HHHcC--------------CE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence 99999999887 89999999764321 11111 12 237888899999999999964 467766 4
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred HHHhcCCCCeEEEECcCchhcCH
Confidence 67788999999999999876654
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=124.77 Aligned_cols=164 Identities=17% Similarity=0.245 Sum_probs=106.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
++|+|||+|.||++||..|.++| ++|.+|+++++..+.....+.... . ..+++.++++++||+||+||
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~~~~~~--------~--~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARALGFGVI--------D--ELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHhcCCCC--------c--ccccCHHHHhcCCCEEEEeC
Confidence 47999999999999999999999 899999988765544433332110 0 12346777889999999999
Q ss_pred chhcHHHHHHHhhh-cCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEEC-----cccHH-HHhccCCeE
Q 012596 208 PVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSG-----PSFAL-ELMNKLPTA 278 (460)
Q Consensus 208 p~~~~~~vl~~i~~-~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~g-----P~~a~-e~~~g~~~~ 278 (460)
|...+.++++++.+ .++++++|.++. ++... +.+.+.+.++.. +.....+.| +..+. .+..+..+.
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~-SvK~~----i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~i 143 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVG-SVKGA----ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWV 143 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCc-cccHH----HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEE
Confidence 99999999999987 477787766654 34322 122333322211 000001222 22222 334555444
Q ss_pred EEEcc-CCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 279 MVVAS-KDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 279 i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
++... .+.+.++.++++|+..|..+...+.
T Consensus 144 l~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~ 174 (359)
T PRK06545 144 LTPDDHTDPDAVAELKDLLSGTGAKFVVLDA 174 (359)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence 33322 4678899999999999988865543
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-11 Score=118.56 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=124.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh---cC----CCccCCCCCCCCceEEeCCHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---HC----NCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~---g~----~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
..+||+|||+|.||..||..|+.+| ++|++||++++..+.+.+. .. ... ........++..+++++++++
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~l~~av~ 82 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANVANAWPALERQG-LAPGASPARLRFVATIEACVA 82 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChhhHHhhceecCCHHHHhc
Confidence 3578999999999999999999999 9999999998765543221 00 000 000112245677788989899
Q ss_pred CCcEEEEccchh-cH-HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC-CEEEEECcccHHHHhccC
Q 012596 199 GADYCLHAMPVQ-FS-SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-PFIALSGPSFALELMNKL 275 (460)
Q Consensus 199 ~aDiVilaVp~~-~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~-~~~v~~gP~~a~e~~~g~ 275 (460)
+||+|+.|+|.. .+ ..++.++.+.++++++|.+.+.|+... .+.+.+..+.. -..-...|.+...
T Consensus 83 ~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s-------~la~~~~~p~R~~g~HffnP~~~~p----- 150 (321)
T PRK07066 83 DADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPT-------DFYARATHPERCVVGHPFNPVYLLP----- 150 (321)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHH-------HHHHhcCCcccEEEEecCCccccCc-----
Confidence 999999999964 34 557788999999998666655555432 23333332111 1112233332221
Q ss_pred CeEEEEcc-CCHHHHHHHHHHHhcCCceEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHH
Q 012596 276 PTAMVVAS-KDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL 353 (460)
Q Consensus 276 ~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~-~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~l 353 (460)
..-++.+. .+++.++++.+++...|...... .|+.|.. . ..+....++|++.+
T Consensus 151 LVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi-----~--------------------NRl~~a~~~EA~~l 205 (321)
T PRK07066 151 LVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFI-----A--------------------DRLLEALWREALHL 205 (321)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHH-----H--------------------HHHHHHHHHHHHHH
Confidence 11112222 36789999999999999766554 5655421 1 23445567788777
Q ss_pred HHHcCCCcccc
Q 012596 354 ATKMGAKPATI 364 (460)
Q Consensus 354 a~a~Gi~~~~~ 364 (460)
.+.-..+++++
T Consensus 206 v~eGvas~edI 216 (321)
T PRK07066 206 VNEGVATTGEI 216 (321)
T ss_pred HHhCCCCHHHH
Confidence 66644555544
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.8e-12 Score=127.59 Aligned_cols=152 Identities=11% Similarity=0.094 Sum_probs=111.8
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.|+|+|. +...++||+.+... +.....++.++.+.|.. ......+.++ ..++|||||+|+||
T Consensus 141 ~~~gI~V~n~~g-~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~------~~~~~~~~~L--~gktVGIVG~G~IG 211 (386)
T PLN03139 141 AAAGLTVAEVTG-SNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNV------AGIAYRAYDL--EGKTVGTVGAGRIG 211 (386)
T ss_pred HHCCeEEEECCC-cCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCcc------ccccCCCcCC--CCCEEEEEeecHHH
Confidence 357899999998 99999999998854 44445566667776632 1111112334 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-hcHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~~~~vl-~ 217 (460)
..+|++|..-| .+|.+|++.....+...+.| +...++++++++.||+|++++|. ..+..++ .
T Consensus 212 ~~vA~~L~afG--~~V~~~d~~~~~~~~~~~~g--------------~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 275 (386)
T PLN03139 212 RLLLQRLKPFN--CNLLYHDRLKMDPELEKETG--------------AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK 275 (386)
T ss_pred HHHHHHHHHCC--CEEEEECCCCcchhhHhhcC--------------ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH
Confidence 99999999777 89999998753222222222 23345789999999999999995 4577777 4
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
++...+++++++|+++.|-..++
T Consensus 276 ~~l~~mk~ga~lIN~aRG~iVDe 298 (386)
T PLN03139 276 ERIAKMKKGVLIVNNARGAIMDT 298 (386)
T ss_pred HHHhhCCCCeEEEECCCCchhhH
Confidence 57788999999999999876653
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.3e-11 Score=118.32 Aligned_cols=202 Identities=13% Similarity=0.127 Sum_probs=139.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH---hhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK---TALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~---ea~~~aDiV 203 (460)
.+.||+||+|.||..+|.+++++| +.|.+|+|+.++.+++.++....+ ++..+.+++ ..++...-|
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G--~~VavyNRt~~ktd~f~~~~~~~k---------~i~~~~sieefV~~Le~PRkI 71 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHG--YTVAVYNRTTEKTDEFLAERAKGK---------NIVPAYSIEEFVASLEKPRKI 71 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcC--ceEEEEeCCHHHHHHHHHhCccCC---------CccccCcHHHHHHHhcCCceE
Confidence 468999999999999999999999 999999999999998877543211 122223444 446789999
Q ss_pred EEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccH-HHHhccCCeEEEE
Q 012596 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA-LELMNKLPTAMVV 281 (460)
Q Consensus 204 ilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a-~e~~~g~~~~i~i 281 (460)
+++|++ ..++.++++|+++|.++.+||+-.|....+|.+...+.-++ | +.++..-..+ ++.+...|. ++
T Consensus 72 ~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~--G-----i~FvG~GVSGGEeGA~~GPS--iM 142 (473)
T COG0362 72 LLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEK--G-----ILFVGMGVSGGEEGARHGPS--IM 142 (473)
T ss_pred EEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhc--C-----CeEEeccccccccccccCCC--cC
Confidence 999998 56899999999999999999999998888875554443322 2 2233222222 233333343 45
Q ss_pred ccCCHHHHHHHHHHHhcCCce-------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHH
Q 012596 282 ASKDRKLANAVQQLLASKHLR-------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~-------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la 354 (460)
-|++.++.+.++++|.....+ .+...| |..+=.|...|-.---=.+.++|++.+.
T Consensus 143 pGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~------------------GAGHfVKmVHNGIEYgDMQlIaE~Y~il 204 (473)
T COG0362 143 PGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPD------------------GAGHFVKMVHNGIEYGDMQLIAEAYDIL 204 (473)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCC------------------CCCceeeeeecCchHHHHHHHHHHHHHH
Confidence 567899999999999853222 222222 3333344445554444567889999998
Q ss_pred HH-cCCCcccccc
Q 012596 355 TK-MGAKPATITG 366 (460)
Q Consensus 355 ~a-~Gi~~~~~~~ 366 (460)
+. +|++.+.+.+
T Consensus 205 k~~lgls~~ei~~ 217 (473)
T COG0362 205 KDGLGLSAEEIAE 217 (473)
T ss_pred HHhcCCCHHHHHH
Confidence 87 7888665543
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-11 Score=125.74 Aligned_cols=197 Identities=15% Similarity=0.159 Sum_probs=126.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-----------hhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-----------EKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~-----------~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
..+||+|||+|.||..||..|+++| ++|++||++++.+++.. ++|.-... .-.....++..+++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE-ECERTLKRLIPVTDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHhccEEeCCHH
Confidence 3578999999999999999999999 99999999998776432 22210000 0001123567788887
Q ss_pred hhcCCCcEEEEccchh-cH-HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHH
Q 012596 195 TALLGADYCLHAMPVQ-FS-SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALE 270 (460)
Q Consensus 195 ea~~~aDiVilaVp~~-~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e 270 (460)
+ +.+||+||.|++.. .+ ..++.++.+.++++++|.+-+.++.+. . +.+.+..+ .... .+..|....
T Consensus 81 ~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~---~----iA~~~~~p~r~~G~-HFf~Papv~- 150 (503)
T TIGR02279 81 A-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT---A----IAAGLARPERVAGL-HFFNPAPVM- 150 (503)
T ss_pred H-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH---H----HHHhcCcccceEEE-eccCccccC-
Confidence 6 57999999999964 44 456677888888888777655555553 1 22222211 1111 122222111
Q ss_pred HhccCCeEEEEccC---CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH
Q 012596 271 LMNKLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGC 347 (460)
Q Consensus 271 ~~~g~~~~i~i~~~---d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~ 347 (460)
..+.+.++ +.+.++++.++++..|..+....|..|. +.| .+....+
T Consensus 151 ------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N--------------------rl~~~~~ 199 (503)
T TIGR02279 151 ------ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVN--------------------RVARPYY 199 (503)
T ss_pred ------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHH--------------------HHHHHHH
Confidence 12334444 7889999999999999888777765442 111 1224577
Q ss_pred HHHHHHHHHcCCCcccccc
Q 012596 348 SEIRWLATKMGAKPATITG 366 (460)
Q Consensus 348 ~E~~~la~a~Gi~~~~~~~ 366 (460)
+|++.++++.+++++++..
T Consensus 200 ~EA~~l~e~g~a~~~~ID~ 218 (503)
T TIGR02279 200 AEALRALEEQVAAPAVLDA 218 (503)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 8888888888887765543
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=123.83 Aligned_cols=197 Identities=18% Similarity=0.194 Sum_probs=125.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l-----------~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
..||+|||+|.||..||..|+++| ++|++||++++.+++. .+.|.-... .-...-.++..++++++
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE-QADAALARLRPVEALAD 83 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH
Confidence 478999999999999999999999 9999999999987663 222310000 00001134677788876
Q ss_pred hcCCCcEEEEccchh-cHHH-HHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHH
Q 012596 196 ALLGADYCLHAMPVQ-FSSS-FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALEL 271 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~~~~-vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~ 271 (460)
+.+||+||.||+.. .++. ++.++...+++++++.+-+.++.+. .+.+....+ ..... +..|....
T Consensus 84 -~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~-------~la~~~~~p~r~~G~h-ff~Pa~v~-- 152 (507)
T PRK08268 84 -LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT-------AIAAALKHPERVAGLH-FFNPVPLM-- 152 (507)
T ss_pred -hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCcccEEEEe-ecCCcccC--
Confidence 57999999999964 4554 5567777788888886555556664 133322211 01122 22232221
Q ss_pred hccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (460)
Q Consensus 272 ~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E 349 (460)
+...++.+ .+.+.++++.+++...|..+....|..|. +.| .+....++|
T Consensus 153 ----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N--------------------rll~~~~~E 203 (507)
T PRK08268 153 ----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGF-----IVN--------------------RAARPYYTE 203 (507)
T ss_pred ----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh-----HHH--------------------HHHHHHHHH
Confidence 11223333 47899999999999998877776764431 112 122347788
Q ss_pred HHHHHHHcCCCcccccc
Q 012596 350 IRWLATKMGAKPATITG 366 (460)
Q Consensus 350 ~~~la~a~Gi~~~~~~~ 366 (460)
++.++++.|++++++.+
T Consensus 204 a~~l~~~g~~~~~~iD~ 220 (507)
T PRK08268 204 ALRVLEEGVADPATIDA 220 (507)
T ss_pred HHHHHHcCCCCHHHHHH
Confidence 88888888887665543
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=115.95 Aligned_cols=149 Identities=16% Similarity=0.182 Sum_probs=105.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~-~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+||+|||+|+||.++|..|.+.| ++|+++++. .+..+.+.+.|. ... +..++++.+|+|++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG--~~Viv~~~~~~~~~~~a~~~Gv--------------~~~-s~~ea~~~ADiVvL 65 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG--LNVIVGLRKGGASWKKATEDGF--------------KVG-TVEEAIPQADLIMN 65 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC--CeEEEEECcChhhHHHHHHCCC--------------EEC-CHHHHHhcCCEEEE
Confidence 578999999999999999999999 788876654 344555544432 233 57778899999999
Q ss_pred ccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-H------hccCCe
Q 012596 206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-L------MNKLPT 277 (460)
Q Consensus 206 aVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e-~------~~g~~~ 277 (460)
++|++ +...+++++.+.++++. +|++..|+.... +...++.. . -.+...|+.+.. + +.|.+.
T Consensus 66 aVpp~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~-------~~~~~~~~-~-~VvrvmPn~p~~~vr~~~~~G~G~~~ 135 (314)
T TIGR00465 66 LLPDEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIHF-------VQIVPPKD-V-DVVMVAPKGPGTLVREEYKEGFGVPT 135 (314)
T ss_pred eCCcHhHHHHHHHHHHhhCCCCc-EEEEeCCccHhh-------ccccCCCC-C-cEEEECCCCCcHHHHHHhhcCCCeeE
Confidence 99988 66777778988888774 899999998652 33344431 2 246778887776 3 455433
Q ss_pred EEEEc-cCCHHHHHHHHHHHhcCCce
Q 012596 278 AMVVA-SKDRKLANAVQQLLASKHLR 302 (460)
Q Consensus 278 ~i~i~-~~d~~~~~~l~~lL~~~g~~ 302 (460)
.+.+. ..+.+..+.+..+|+..|..
T Consensus 136 l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 136 LIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 22122 23567788899999988765
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-12 Score=125.55 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=112.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+..++|+|.|. ....++||+..... +.....++.++++.|++ ....+.++ ..+++||||+|++|+
T Consensus 87 ~~gi~V~nap~-~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~--------~~~~g~el--~gkTvGIiG~G~IG~ 155 (324)
T COG0111 87 KRGILVVNAPG-GNAISVAELVLALLLALARRIPDADASQRRGEWDR--------KAFRGTEL--AGKTVGIIGLGRIGR 155 (324)
T ss_pred hcCCEEEeCCC-cchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc--------cccccccc--cCCEEEEECCCHHHH
Confidence 34699999999 88999999998844 67777777788887744 11223335 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-
Q 012596 141 AMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE- 217 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~- 217 (460)
.+|.++..-| .+|.+||+.. ..... .. .....++++++++.||+|++.+|.+ .++.++.
T Consensus 156 ~va~~l~afg--m~v~~~d~~~~~~~~~--~~--------------~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~ 217 (324)
T COG0111 156 AVAKRLKAFG--MKVIGYDPYSPRERAG--VD--------------GVVGVDSLDELLAEADILTLHLPLTPETRGLINA 217 (324)
T ss_pred HHHHHHHhCC--CeEEEECCCCchhhhc--cc--------------cceecccHHHHHhhCCEEEEcCCCCcchhcccCH
Confidence 9999999777 9999999933 21111 11 1233457999999999999999954 5788774
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....||+|+++|+++.|-..+.
T Consensus 218 ~~~a~MK~gailIN~aRG~vVde 240 (324)
T COG0111 218 EELAKMKPGAILINAARGGVVDE 240 (324)
T ss_pred HHHhhCCCCeEEEECCCcceecH
Confidence 45677899999999999977664
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=114.48 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=110.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH--HHHHHhhcCCCccCCCCCCCCceEEeCCH-HhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVIATTDA-KTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~--~~~l~~~g~~~~~~~~~~l~~~i~a~~~~-~ea~~~aDiV 203 (460)
+++|+|+|+|.||+.+|..|.++| +.|.+++++... .+.-.+.|.. + ..+.+. .+++..+|+|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g--~~v~i~g~d~~~~~~~~a~~lgv~--d----------~~~~~~~~~~~~~aD~V 68 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG--LVVRIIGRDRSAATLKAALELGVI--D----------ELTVAGLAEAAAEADLV 68 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC--CeEEEEeecCcHHHHHHHhhcCcc--c----------ccccchhhhhcccCCEE
Confidence 689999999999999999999999 888777776543 3332222321 0 111222 4567789999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCC--CCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--PRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~--~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+|||-..+.++++++.+.++++++|.++.. + ...+.+.+.+..+. ..++...+.||..-.....+. .+++
T Consensus 69 ivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S-~----K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~--~~vl 141 (279)
T COG0287 69 IVAVPIEATEEVLKELAPHLKKGAIVTDVGS-V----KSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENA--VVVL 141 (279)
T ss_pred EEeccHHHHHHHHHHhcccCCCCCEEEeccc-c----cHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCC--EEEE
Confidence 9999999999999999999999999998763 1 12334455555433 122223445553111222333 2334
Q ss_pred cc---CCHHHHHHHHHHHhcCCceEEEcCChHHHHH
Q 012596 282 AS---KDRKLANAVQQLLASKHLRISTSSDVTGVEI 314 (460)
Q Consensus 282 ~~---~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~ 314 (460)
.. .+.+.++++.+++...|.+++..+.-.++..
T Consensus 142 tp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~ 177 (279)
T COG0287 142 TPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRV 177 (279)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHH
Confidence 32 3467899999999999988887665455443
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=115.22 Aligned_cols=196 Identities=13% Similarity=0.148 Sum_probs=121.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~-----------l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+.||+|||+|.||..||..|+.+| ++|++||++++.+++ +.+.|..... .-.....++..+++++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~- 80 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER-ERDAALARLRFTTDLG- 80 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChh-hHHHHHhCeEeeCCHH-
Confidence 468999999999999999999999 999999999987665 2222211000 0001123566788885
Q ss_pred hcCCCcEEEEccchh-cH-HHHHHHhhhcC-CCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHH
Q 012596 196 ALLGADYCLHAMPVQ-FS-SSFLEGISDYV-DPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALEL 271 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~~-~~vl~~i~~~l-~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~-~~v~~gP~~a~e~ 271 (460)
.+++||+||.|+|.. .+ ..++..+.+.+ ++++++++.+.++.... +......+... ......|.....
T Consensus 81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~-------la~~~~~~~r~~g~hf~~P~~~~~- 152 (286)
T PRK07819 81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK-------LAAATKRPGRVLGLHFFNPVPVLP- 152 (286)
T ss_pred HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCccEEEEecCCCcccCc-
Confidence 479999999999964 44 44667777777 78999998887666542 22222211010 112222322111
Q ss_pred hccCCeEEEE-ccCCHHHHHHHHHHHh-cCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVV-ASKDRKLANAVQQLLA-SKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (460)
Q Consensus 272 ~~g~~~~i~i-~~~d~~~~~~l~~lL~-~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E 349 (460)
...++. ...+++.++++.+++. ..|..+....|..|.. ...+....++|
T Consensus 153 ----lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi-------------------------~nRi~~~~~~E 203 (286)
T PRK07819 153 ----LVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFV-------------------------VNALLVPYLLS 203 (286)
T ss_pred ----eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCChH-------------------------HHHHHHHHHHH
Confidence 112222 3457899999999987 4776666556644321 12345567788
Q ss_pred HHHHHHHcCCCccc
Q 012596 350 IRWLATKMGAKPAT 363 (460)
Q Consensus 350 ~~~la~a~Gi~~~~ 363 (460)
++.+.+.--.++++
T Consensus 204 a~~ll~eGv~~~~d 217 (286)
T PRK07819 204 AIRMVESGFATAED 217 (286)
T ss_pred HHHHHHhCCCCHHH
Confidence 88877533234444
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-11 Score=120.36 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=109.7
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.|+|.|+ |..+++||+..... +.....++.++++.|... +...+. +.++ ..++|||||+|++|
T Consensus 86 ~~~gI~V~n~~~-~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~--~~~~~~---g~~L--~gktvGIiG~G~IG 157 (323)
T PRK15409 86 TARKILLMHTPT-VLTETVADTLMALVLSTARRVVEVAERVKAGEWTAS--IGPDWF---GTDV--HHKTLGIVGMGRIG 157 (323)
T ss_pred HHCCCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccc--Cccccc---cCCC--CCCEEEEEcccHHH
Confidence 357899999999 99999999997744 555566777778877431 111111 2345 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~ 217 (460)
..+|+++. .+++.+|.+|++..... .....+ +.. .+++++++.||+|++++|.+ .++.++ .
T Consensus 158 ~~va~~l~-~~fgm~V~~~~~~~~~~-~~~~~~--------------~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~ 220 (323)
T PRK15409 158 MALAQRAH-FGFNMPILYNARRHHKE-AEERFN--------------ARY-CDLDTLLQESDFVCIILPLTDETHHLFGA 220 (323)
T ss_pred HHHHHHHH-hcCCCEEEEECCCCchh-hHHhcC--------------cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH
Confidence 99999987 23348999999864211 111111 122 37899999999999999954 577776 3
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 221 ~~l~~mk~ga~lIN~aRG~vVde 243 (323)
T PRK15409 221 EQFAKMKSSAIFINAGRGPVVDE 243 (323)
T ss_pred HHHhcCCCCeEEEECCCccccCH
Confidence 46778899999999999977654
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-11 Score=105.22 Aligned_cols=98 Identities=26% Similarity=0.302 Sum_probs=67.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+||+|||+|++|..++..|.++| +.|. +|+|+.+..+++...-. .. ...++.+.++++|++|
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag--~~v~~v~srs~~sa~~a~~~~~------------~~-~~~~~~~~~~~aDlv~ 73 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG--HEVVGVYSRSPASAERAAAFIG------------AG-AILDLEEILRDADLVF 73 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT--SEEEEESSCHH-HHHHHHC--T------------T------TTGGGCC-SEEE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCCcccccccccccc------------cc-cccccccccccCCEEE
Confidence 3589999999999999999999999 8887 55788776666654310 11 1235667889999999
Q ss_pred EccchhcHHHHHHHhhhc--CCCCCeEEEeccCCcc
Q 012596 205 HAMPVQFSSSFLEGISDY--VDPGLPFISLSKGLEL 238 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~--l~~~~iIV~~~~Gi~~ 238 (460)
++||++.+.++.++|... ..++++++.++-.++.
T Consensus 74 iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 74 IAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp E-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred EEechHHHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence 999999999999999877 7789999999854544
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=106.92 Aligned_cols=213 Identities=16% Similarity=0.163 Sum_probs=126.9
Q ss_pred CeEEEECcch--------------------HHHHHHHHHHhcCCCCeEEEEeCCHHHH-----HHHHhhcCCCccCCCCC
Q 012596 128 NKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPAVC-----QSINEKHCNCRYFPEQK 182 (460)
Q Consensus 128 ~kI~IIGaG~--------------------mG~~~A~~La~~G~~~~V~v~~r~~~~~-----~~l~~~g~~~~~~~~~~ 182 (460)
|||.|.|+|+ -|.+||.+|+++| |+|++|||+++.+ +.+.+.|
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAG--heV~V~Drnrsa~e~e~~e~LaeaG---------- 68 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAG--HDVVLAEPNREFMSDDLWKKVEDAG---------- 68 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCC--CEEEEEeCChhhhhhhhhHHHHHCC----------
Confidence 7899999997 4889999999999 9999999987644 3455554
Q ss_pred CCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhh-hHHHHHH---HHhCC-CC
Q 012596 183 LPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLR-MMSQIIP---QALRN-PR 256 (460)
Q Consensus 183 l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~-~l~e~l~---~~lg~-~~ 256 (460)
+..++++.++++++|+||+|+|.. ++++++.++.+.+++|+++|++++ +++++.. .+.+.++ +-+|. .+
T Consensus 69 ----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~ST-IsP~t~~~~~e~~l~~~r~d~~v~s~ 143 (341)
T TIGR01724 69 ----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCT-VSPVVLYYSLEKILRLKRTDVGISSM 143 (341)
T ss_pred ----CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCC-CCHHHHHHHHHHHhhcCccccCeecc
Confidence 345668889999999999999965 478898889999999999999986 7765422 2222222 11111 12
Q ss_pred CCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEE-cCChHHH--HHHHHHHHHHHHHHHHHh---
Q 012596 257 QPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST-SSDVTGV--EIAGALKNVLAIAAGIVV--- 330 (460)
Q Consensus 257 ~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~--~~~kalkNv~ai~~g~~~--- 330 (460)
+|.++-..|.+..-+..|.. ..--+-.+.++.+++.++-++.+-..+. ..|+.+. .++.++.-+. ..|+.+
T Consensus 144 HP~~vP~~~~~~~~~~~~~~-~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta~~--~~gil~y~~ 220 (341)
T TIGR01724 144 HPAAVPGTPQHGHYVIGGKP-TAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTAVA--LAGVLDYYY 220 (341)
T ss_pred CCCCCCCCCCCceeeecccc-ccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHHH--HHHHHHHHH
Confidence 33322222221110111110 0011113578899999999987766554 3344332 1333222111 112221
Q ss_pred -c-ccCCCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012596 331 -G-MNLGNN--SMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 331 -~-~kl~~n--~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+ ..++.+ .....+...+.-+..+-+..|++
T Consensus 221 ~~t~i~~ap~~~~~~~~~~~l~~~a~l~~~~Gi~ 254 (341)
T TIGR01724 221 VGTQIINAPKEMIEKQILMTLQTMASLVETSGVE 254 (341)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1 012222 22244556667777788888876
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.3e-11 Score=123.18 Aligned_cols=145 Identities=14% Similarity=0.202 Sum_probs=108.6
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|. +..+++||+..... +.....++.++++.|.+ .. ..+.++ ..++|||||+|++|.
T Consensus 96 ~~gI~V~n~pg-~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~------~~--~~~~~L--~gktvGIiG~G~IG~ 164 (409)
T PRK11790 96 KRGIPVFNAPF-SNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNK------SA--AGSFEV--RGKTLGIVGYGHIGT 164 (409)
T ss_pred hCCCEEEeCCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccc------cc--cCcccC--CCCEEEEECCCHHHH
Confidence 47899999999 99999999998854 44444556666666632 21 112334 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|+++..-| .+|.+|++.+... .+ .+....+++++++.||+|++++|.+ .+..++ .+
T Consensus 165 ~vA~~~~~fG--m~V~~~d~~~~~~-----~~-------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~ 224 (409)
T PRK11790 165 QLSVLAESLG--MRVYFYDIEDKLP-----LG-------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAE 224 (409)
T ss_pred HHHHHHHHCC--CEEEEECCCcccc-----cC-------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHH
Confidence 9999999766 9999999864210 00 1223457999999999999999964 577777 34
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 225 ~l~~mk~ga~lIN~aRG~~vde 246 (409)
T PRK11790 225 ELALMKPGAILINASRGTVVDI 246 (409)
T ss_pred HHhcCCCCeEEEECCCCcccCH
Confidence 6778899999999999977664
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.17 E-value=6e-11 Score=127.19 Aligned_cols=148 Identities=12% Similarity=0.180 Sum_probs=109.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|.|. +...++||+..... +.....++.++.+.|++. .+ .+.++ ..++|||||+|+||.
T Consensus 83 ~~gI~V~n~pg-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-----~~---~g~~l--~gktvgIiG~G~IG~ 151 (525)
T TIGR01327 83 ARGILVVNAPT-GNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK-----AF---MGTEL--YGKTLGVIGLGRIGS 151 (525)
T ss_pred HCCCEEEeCCC-cChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc-----cc---Ccccc--CCCEEEEECCCHHHH
Confidence 56899999998 99999999998844 444556666677766431 11 12334 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|++|..-| ++|++||+.... +...+.+ +...++++++++.||+|++++|.+ .++.++ .+
T Consensus 152 ~vA~~l~~fG--~~V~~~d~~~~~-~~~~~~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~ 214 (525)
T TIGR01327 152 IVAKRAKAFG--MKVLAYDPYISP-ERAEQLG--------------VELVDDLDELLARADFITVHTPLTPETRGLIGAE 214 (525)
T ss_pred HHHHHHHhCC--CEEEEECCCCCh-hHHHhcC--------------CEEcCCHHHHHhhCCEEEEccCCChhhccCcCHH
Confidence 9999999777 899999985321 1111211 233457899999999999999965 567766 35
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 215 ~l~~mk~ga~lIN~aRG~~vde 236 (525)
T TIGR01327 215 ELAKMKKGVIIVNCARGGIIDE 236 (525)
T ss_pred HHhcCCCCeEEEEcCCCceeCH
Confidence 5667899999999999876654
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.8e-11 Score=126.83 Aligned_cols=148 Identities=13% Similarity=0.175 Sum_probs=110.0
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.++|.|. +...++||+.+... +.....++.++.+.|++ .. ..+.++ ..++|||||+|+||
T Consensus 84 ~~~gI~V~n~p~-~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~------~~--~~g~~l--~gktvgIiG~G~IG 152 (526)
T PRK13581 84 TRRGIIVVNAPT-GNTISAAEHTIALMLALARNIPQAHASLKAGKWER------KK--FMGVEL--YGKTLGIIGLGRIG 152 (526)
T ss_pred HHCCCEEEeCCC-CChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCc------cC--cccccc--CCCEEEEECCCHHH
Confidence 367899999999 89999999998854 44444555666666643 11 112234 36899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~ 217 (460)
..+|++|..-| ++|++|++.... +.....+ +... +++++++.||+|++++|.+ .+..++ .
T Consensus 153 ~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~~g--------------~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~ 214 (526)
T PRK13581 153 SEVAKRAKAFG--MKVIAYDPYISP-ERAAQLG--------------VELV-SLDELLARADFITLHTPLTPETRGLIGA 214 (526)
T ss_pred HHHHHHHHhCC--CEEEEECCCCCh-hHHHhcC--------------CEEE-cHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence 99999999877 899999985421 1111212 2233 7889999999999999965 577777 4
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 215 ~~l~~mk~ga~lIN~aRG~~vde 237 (526)
T PRK13581 215 EELAKMKPGVRIINCARGGIIDE 237 (526)
T ss_pred HHHhcCCCCeEEEECCCCceeCH
Confidence 67788999999999999877654
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.7e-11 Score=119.90 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=108.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|.|. |..+++||+..... +.....++.++.+.|....-|. .......++ ..++|||||.|++|.
T Consensus 84 ~~gI~v~n~~g-~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~--~~~~~~~~L--~gktvGIiG~G~IG~ 158 (311)
T PRK08410 84 KKGIAVKNVAG-YSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFT--HISRPLGEI--KGKKWGIIGLGTIGK 158 (311)
T ss_pred hCCCEEEcCCC-CCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCcc--ccCcccccc--CCCEEEEECCCHHHH
Confidence 57899999999 99999999998854 5555567777777774311000 000112234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|+++..-| .+|..|+|..... ..+ +. ..+++++++.||+|++++|.+ .++.++ ++
T Consensus 159 ~vA~~~~~fg--m~V~~~d~~~~~~----~~~--------------~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 159 RVAKIAQAFG--AKVVYYSTSGKNK----NEE--------------YE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred HHHHHHhhcC--CEEEEECCCcccc----ccC--------------ce-eecHHHHhhcCCEEEEeCCCCchhhcccCHH
Confidence 9999998555 9999999864210 001 11 237899999999999999954 567766 34
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 218 ~~~~Mk~~a~lIN~aRG~vVDe 239 (311)
T PRK08410 218 ELKLLKDGAILINVGRGGIVNE 239 (311)
T ss_pred HHHhCCCCeEEEECCCccccCH
Confidence 6677899999999999977664
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=119.96 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=112.5
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.|+|+|+ +...++||+..... +.....++.++.+.|.+ |.+.+ ..+.++ ..++|||||+|.+|
T Consensus 106 ~~~gI~V~n~pg-~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~---~~~~~--~~g~~L--~gktvGIiG~G~IG 177 (386)
T PLN02306 106 NKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYEG---WLPHL--FVGNLL--KGQTVGVIGAGRIG 177 (386)
T ss_pred HHCCCEEEECCC-cCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcc---ccccc--cCCcCC--CCCEEEEECCCHHH
Confidence 357899999998 99999999999854 45555567777787742 43221 112334 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHH-HHHH-HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAV-CQSI-NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL 216 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~-~~~l-~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl 216 (460)
..+|++|.. +++.+|.+||+.... .+.. ...+......... +..+....+++++++.||+|++++|.+ .++.++
T Consensus 178 ~~vA~~l~~-~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li 254 (386)
T PLN02306 178 SAYARMMVE-GFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ--PVTWKRASSMEEVLREADVISLHPVLDKTTYHLI 254 (386)
T ss_pred HHHHHHHHh-cCCCEEEEECCCCchhhhhhhhhhcccccccccc--cccccccCCHHHHHhhCCEEEEeCCCChhhhhhc
Confidence 999999863 234899999987532 1111 1111100000000 001122357999999999999999954 577777
Q ss_pred H-HhhhcCCCCCeEEEeccCCccch
Q 012596 217 E-GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 217 ~-~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
. +....|++++++|+++.|-..++
T Consensus 255 n~~~l~~MK~ga~lIN~aRG~lVDe 279 (386)
T PLN02306 255 NKERLALMKKEAVLVNASRGPVIDE 279 (386)
T ss_pred CHHHHHhCCCCeEEEECCCccccCH
Confidence 3 46778899999999999877664
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=122.26 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=108.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||+|||+|.||.+++..|.+.|+.++|++|++++++++.+.+.|... ...++..++++++|+||+|
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVID------------RGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCC------------cccCCHHHHhcCCCEEEEC
Confidence 4789999999999999999999884357999999998877766655310 1234667778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC---CEEEEECccc-----HH-HHhccCCe
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ---PFIALSGPSF-----AL-ELMNKLPT 277 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~---~~~v~~gP~~-----a~-e~~~g~~~ 277 (460)
+|.+.+.++++++.++++++++|+++. |+.... .+.+.+.++.... +...+.|+.. +. +...+...
T Consensus 71 vp~~~~~~vl~~l~~~~~~~~ii~d~~-svk~~~----~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~ 145 (735)
T PRK14806 71 VPVLAMEKVLADLKPLLSEHAIVTDVG-STKGNV----VDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKV 145 (735)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEcC-CCchHH----HHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeE
Confidence 999999999999999888887776665 343222 2333333322100 0011122221 11 22234333
Q ss_pred EEEE-ccCCHHHHHHHHHHHhcCCceEEEcC
Q 012596 278 AMVV-ASKDRKLANAVQQLLASKHLRISTSS 307 (460)
Q Consensus 278 ~i~i-~~~d~~~~~~l~~lL~~~g~~v~~~~ 307 (460)
.++. ...+.+..+.++++|+..|.++...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 146 ILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 3332 23567788999999999998776653
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-09 Score=117.73 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=108.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi 204 (460)
++|||+|||+|.||..+|..|.+.| ++|++|+|+... +...+.| +...++.++++ .++|+||
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G--~~V~~~dr~~~~-~~A~~~G--------------v~~~~d~~e~~~~~aDvVi 113 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQG--HTVLAHSRSDHS-LAARSLG--------------VSFFLDPHDLCERHPDVIL 113 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHH-HHHHHcC--------------CEEeCCHHHHhhcCCCEEE
Confidence 3579999999999999999999998 899999998543 3333333 23345677744 5699999
Q ss_pred EccchhcHHHHHHHhh-hcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEE
Q 012596 205 HAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 205 laVp~~~~~~vl~~i~-~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
+|||...+.++++++. +.++++++|+++.+ +- ..+.+.+.+.++.. .+....+.||........+.. ..+
T Consensus 114 LavP~~~~~~vl~~l~~~~l~~g~iVvDv~S-vK----~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~--~~~ 186 (667)
T PLN02712 114 LCTSIISTENVLKSLPLQRLKRNTLFVDVLS-VK----EFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR--FVY 186 (667)
T ss_pred EcCCHHHHHHHHHhhhhhcCCCCeEEEECCC-Cc----HHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc--EEE
Confidence 9999999999999886 67888999999852 22 23344455544321 111223446653222122332 222
Q ss_pred c----cCC---HHHHHHHHHHHhcCCceEEEcCChHHHHHHH
Q 012596 282 A----SKD---RKLANAVQQLLASKHLRISTSSDVTGVEIAG 316 (460)
Q Consensus 282 ~----~~d---~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~k 316 (460)
. +.+ .+.++.+.+++...|.++...+--.+.....
T Consensus 187 ~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A 228 (667)
T PLN02712 187 EKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAA 228 (667)
T ss_pred eeccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHH
Confidence 2 222 2456777899999998888765544444333
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=117.44 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=106.6
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|+|. |..+++||+.+... +.....++.++++.|.....|.. ......++ ..++|||||.|.+|.
T Consensus 86 ~~gI~v~n~~g-~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~--~~~~~~~l--~gktvgIiG~G~IG~ 160 (314)
T PRK06932 86 ELGIAVKNVTG-YSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCY--FDYPITDV--RGSTLGVFGKGCLGT 160 (314)
T ss_pred hCCCEEEeCCC-CChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccc--cCCccccc--CCCEEEEECCCHHHH
Confidence 56899999998 99999999998844 44455666677777743111110 01111234 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|+++..-| .+|..|++.... .. . . ...+++++++.||+|++++|.+ .++.++ .+
T Consensus 161 ~va~~l~~fg--~~V~~~~~~~~~--~~---~--------------~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~ 218 (314)
T PRK06932 161 EVGRLAQALG--MKVLYAEHKGAS--VC---R--------------E-GYTPFEEVLKQADIVTLHCPLTETTQNLINAE 218 (314)
T ss_pred HHHHHHhcCC--CEEEEECCCccc--cc---c--------------c-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHH
Confidence 9999998555 899999875310 00 0 0 0137889999999999999954 567776 34
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 219 ~l~~mk~ga~lIN~aRG~~Vde 240 (314)
T PRK06932 219 TLALMKPTAFLINTGRGPLVDE 240 (314)
T ss_pred HHHhCCCCeEEEECCCccccCH
Confidence 6677899999999999977664
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=115.68 Aligned_cols=145 Identities=10% Similarity=0.126 Sum_probs=103.4
Q ss_pred CceeecCCCCCCCCCcccccccccc-ccCC---cccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHH
Q 012596 66 DNTIITPYPDDPDPEPVSAVSSEIR-TRDG---RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTA 141 (460)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~ 141 (460)
.++.+++.|+++...++||+.+... ...| ..++.++.+.|.. . ...++ ..++|||||+|+||..
T Consensus 83 ~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~------~----~~~~l--~g~tvgIvG~G~IG~~ 150 (312)
T PRK15469 83 PSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQP------L----PEYHR--EDFTIGILGAGVLGSK 150 (312)
T ss_pred CCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCC------C----CCCCc--CCCEEEEECCCHHHHH
Confidence 4677888887677889999998855 3333 3344455555522 1 11123 3589999999999999
Q ss_pred HHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-Hh
Q 012596 142 MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-GI 219 (460)
Q Consensus 142 ~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~-~i 219 (460)
+|++|..-| ++|++|++.++... +.. ......++++++++||+|++++|.+ .+..++. +.
T Consensus 151 vA~~l~afG--~~V~~~~~~~~~~~-----~~~-----------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~ 212 (312)
T PRK15469 151 VAQSLQTWG--FPLRCWSRSRKSWP-----GVQ-----------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQL 212 (312)
T ss_pred HHHHHHHCC--CEEEEEeCCCCCCC-----Cce-----------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHH
Confidence 999999877 99999998753211 100 0011237889999999999999964 5777774 46
Q ss_pred hhcCCCCCeEEEeccCCccch
Q 012596 220 SDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 220 ~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
...+++++++|++..|-..++
T Consensus 213 l~~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred HhcCCCCcEEEECCCccccCH
Confidence 777899999999999977664
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=116.01 Aligned_cols=149 Identities=12% Similarity=0.143 Sum_probs=108.2
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.++|.|. |..+++||+..... +.....++.++.+.|...-.+. .......++ ..++|||||+|++|
T Consensus 86 ~~~gI~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~--~~~~~~~~l--~gktvgIiG~G~IG 160 (317)
T PRK06487 86 RERGITVCNCQG-YGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFC--LLDFPIVEL--EGKTLGLLGHGELG 160 (317)
T ss_pred HHCCCEEEeCCC-CCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccc--cccCccccc--CCCEEEEECCCHHH
Confidence 356899999999 99999999998854 5555666777777774311000 001112234 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-hcHHHHHH-
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE- 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~~~~vl~- 217 (460)
..+|++|..-| .+|.+|+|.... .. .. ..+++++++.||+|++++|. ..++.++.
T Consensus 161 ~~vA~~l~~fg--m~V~~~~~~~~~------~~--------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~ 217 (317)
T PRK06487 161 GAVARLAEAFG--MRVLIGQLPGRP------AR--------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGA 217 (317)
T ss_pred HHHHHHHhhCC--CEEEEECCCCCc------cc--------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCH
Confidence 99999998555 899999986310 00 01 12688999999999999995 45777763
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 218 ~~~~~mk~ga~lIN~aRG~vVde 240 (317)
T PRK06487 218 RELALMKPGALLINTARGGLVDE 240 (317)
T ss_pred HHHhcCCCCeEEEECCCccccCH
Confidence 46677899999999999977664
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.6e-10 Score=101.83 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=101.3
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC----CccCCCCC------CCCceEEeCCHHhhcC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN----CRYFPEQK------LPENVIATTDAKTALL 198 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~----~~~~~~~~------l~~~i~a~~~~~ea~~ 198 (460)
||+|||+|.||..+|..++.+| ++|++||++++.++...+.-.. ........ ...++..++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 7999999999999999999999 9999999999865443221000 00000110 124678889999876
Q ss_pred CCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHhccC
Q 012596 199 GADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELMNKL 275 (460)
Q Consensus 199 ~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~~g~ 275 (460)
+||+||-++|.. .-.+++.++.+.+++++++.+.+.++.... +.+.+..+. .-..-+..|.+...+
T Consensus 78 ~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~-------la~~~~~p~R~ig~Hf~~P~~~~~l---- 146 (180)
T PF02737_consen 78 DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE-------LAAALSRPERFIGMHFFNPPHLMPL---- 146 (180)
T ss_dssp TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH-------HHTTSSTGGGEEEEEE-SSTTT--E----
T ss_pred hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH-------HHhccCcCceEEEEecccccccCce----
Confidence 999999999964 356789999999999999998887777642 233232211 111233445543211
Q ss_pred CeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 276 PTAMVVA-SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 276 ~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
.-++.+ ..+.+.++.+..++...|.......|
T Consensus 147 -VEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 147 -VEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp -EEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred -EEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 122223 24678899999999999888766554
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-09 Score=117.93 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=104.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVi 204 (460)
+.|||+|||+|.||..+|..|.+.| ++|++|+|+.+. +...+.| +...++.++++. .+|+||
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G--~~V~~~dr~~~~-~~a~~~G--------------v~~~~~~~el~~~~aDvVI 430 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG--HTVLAYSRSDYS-DEAQKLG--------------VSYFSDADDLCEEHPEVIL 430 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc--CEEEEEECChHH-HHHHHcC--------------CeEeCCHHHHHhcCCCEEE
Confidence 3589999999999999999999988 899999998643 3333333 223457777665 589999
Q ss_pred EccchhcHHHHHHHhhh-cCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHh-cc---CCe--
Q 012596 205 HAMPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELM-NK---LPT-- 277 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~-~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~-~g---~~~-- 277 (460)
+|||...+.++++++.. .+++++++++++.+-. ...+.+.+.++.. .. .+..-|.++.+.. .| .+.
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~-----~~~~~~~~~l~~~-~~-~v~~HPm~G~e~~~~G~~~~~~lf 503 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKE-----FPRNLFLQHLPQD-FD-ILCTHPMFGPESGKNGWNNLAFVF 503 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccH-----HHHHHHHHhccCC-Cc-eEeeCCCCCccccccchhhhhhhc
Confidence 99999999999988865 6788999999865321 2223444444321 11 1212333322211 11 110
Q ss_pred -EEEEccC--CHHHHHHHHHHHhcCCceEEEcCChHHHH
Q 012596 278 -AMVVASK--DRKLANAVQQLLASKHLRISTSSDVTGVE 313 (460)
Q Consensus 278 -~i~i~~~--d~~~~~~l~~lL~~~g~~v~~~~Di~g~~ 313 (460)
...+++. ..+.++.+.+++...|.+++..+--.++.
T Consensus 504 ~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~ 542 (667)
T PLN02712 504 DKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDW 542 (667)
T ss_pred cCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHH
Confidence 0112221 23456677799999998887765444443
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=104.71 Aligned_cols=191 Identities=17% Similarity=0.191 Sum_probs=126.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------CCCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------LPENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~------l~~~i~a~~~~~ea~~~a 200 (460)
|+||+.||+|.+|++....++-.-.+.+|+++|.+..++.+++...+ +.|.|+++ -.+++.+.+|.+.++.++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~l-piyepgldevv~~crgknlffstdiekai~ea 79 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKL-PIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA 79 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCC-cccCCCHHHHHHHhcCCceeeecchHHHhhhc
Confidence 47999999999999988888755444689999999888888776542 56777763 246778889999999999
Q ss_pred cEEEEccchh---------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECc
Q 012596 201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP 265 (460)
Q Consensus 201 DiVilaVp~~---------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP 265 (460)
|+||++|... .++++...|.+.....++++--++ +...+.+.+..++... .....+.+++.|
T Consensus 80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekst-vpv~aaesi~~il~~n--~~~i~fqilsnp 156 (481)
T KOG2666|consen 80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKST-VPVKAAESIEKILNHN--SKGIKFQILSNP 156 (481)
T ss_pred ceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeecc-ccchHHHHHHHHHhcC--CCCceeEeccCh
Confidence 9999987431 355666667776665666665443 4444333333344211 123457789999
Q ss_pred ccHHHHh----ccCCeEEEEccCCH----HHHHHHHHHHhcC-CceEEEcCChHHHHHHHHHHHH
Q 012596 266 SFALELM----NKLPTAMVVASKDR----KLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNV 321 (460)
Q Consensus 266 ~~a~e~~----~g~~~~i~i~~~d~----~~~~~l~~lL~~~-g~~v~~~~Di~g~~~~kalkNv 321 (460)
.+..|.. .-++..+.+||.+. .+++.+..++... ...-..+.+.+..+..|+..|.
T Consensus 157 eflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaana 221 (481)
T KOG2666|consen 157 EFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANA 221 (481)
T ss_pred HHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence 9876532 12455677887542 4566667777653 2223445566777777766654
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-10 Score=112.58 Aligned_cols=149 Identities=10% Similarity=0.173 Sum_probs=104.1
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
++..++++.+. ++ .++||+.+... +.....++.++.+.|.. . ...++ ..++|||||+|+||.
T Consensus 70 ~~~i~~~~~g~-~~-~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~------~----~~~~L--~gktvgIiG~G~IG~ 135 (303)
T PRK06436 70 ENVVLCSNAGA-YS-ISVAEHAFALLLAWAKNICENNYNMKNGNFKQ------S----PTKLL--YNKSLGILGYGGIGR 135 (303)
T ss_pred hCCeEEEcCCC-Cc-HHHHHHHHHHHHHHHcChHHHHHHHHcCCCCC------C----CCCCC--CCCEEEEECcCHHHH
Confidence 34566666543 54 69999999855 44555666666666632 1 12234 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|++|..-| ++|++|+|+... .+.. ....+++++++.||+|++++|.+ .++.++ .+
T Consensus 136 ~vA~~l~afG--~~V~~~~r~~~~------~~~~-------------~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~ 194 (303)
T PRK06436 136 RVALLAKAFG--MNIYAYTRSYVN------DGIS-------------SIYMEPEDIMKKSDFVLISLPLTDETRGMINSK 194 (303)
T ss_pred HHHHHHHHCC--CEEEEECCCCcc------cCcc-------------cccCCHHHHHhhCCEEEECCCCCchhhcCcCHH
Confidence 9999887667 999999987421 1110 11247889999999999999964 467766 34
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
....+++++++|+++.|-..++ ..+.+.+.
T Consensus 195 ~l~~mk~ga~lIN~sRG~~vd~-~aL~~aL~ 224 (303)
T PRK06436 195 MLSLFRKGLAIINVARADVVDK-NDMLNFLR 224 (303)
T ss_pred HHhcCCCCeEEEECCCccccCH-HHHHHHHH
Confidence 6677899999999999876654 23334443
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.1e-10 Score=112.54 Aligned_cols=158 Identities=10% Similarity=0.111 Sum_probs=104.1
Q ss_pred CCceeecCCCCCC---CCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcch
Q 012596 65 NDNTIITPYPDDP---DPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGS 137 (460)
Q Consensus 65 ~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~ 137 (460)
+.++.++|+|+ | ...++||..+... +.....++.++.+.| ... .+.++ ..++|||||+|.
T Consensus 103 ~~gi~v~n~~~-~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w------~~~----~~~~l--~gktvGIiG~G~ 169 (347)
T PLN02928 103 KHGIKVARIPS-EGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRL------GEP----IGDTL--FGKTVFILGYGA 169 (347)
T ss_pred hCCCEEEECCC-CCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCc------ccc----cccCC--CCCEEEEECCCH
Confidence 56899999998 6 4689999998854 333344454554444 221 12234 368999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH
Q 012596 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL 216 (460)
Q Consensus 138 mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl 216 (460)
||..+|++|..-| .+|++|+|+...... ...+........ +........+++++++.||+|++++|.+ .+..++
T Consensus 170 IG~~vA~~l~afG--~~V~~~dr~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li 244 (347)
T PLN02928 170 IGIELAKRLRPFG--VKLLATRRSWTSEPE-DGLLIPNGDVDD--LVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIV 244 (347)
T ss_pred HHHHHHHHHhhCC--CEEEEECCCCChhhh-hhhccccccccc--cccccCcccCHHHHHhhCCEEEECCCCChHhhccc
Confidence 9999999999777 899999987321111 000000000000 0000001247889999999999999954 466666
Q ss_pred -HHhhhcCCCCCeEEEeccCCccch
Q 012596 217 -EGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 217 -~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
.+....+++++++|+++.|-..++
T Consensus 245 ~~~~l~~Mk~ga~lINvaRG~lVde 269 (347)
T PLN02928 245 NDEFLSSMKKGALLVNIARGGLLDY 269 (347)
T ss_pred CHHHHhcCCCCeEEEECCCccccCH
Confidence 456777899999999999876654
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.4e-09 Score=105.90 Aligned_cols=158 Identities=13% Similarity=0.188 Sum_probs=103.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||+ |.||+.+|..|.+.. +++|+.||+..+ ...++++++++||+||
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi 56 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP-------------------------GSLDPATLLQRADVLI 56 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence 3579999999 999999999999752 389999998521 1125667789999999
Q ss_pred EccchhcHHHHHHHhhhc---CCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 205 HAMPVQFSSSFLEGISDY---VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~---l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
+|||...+.++++++.++ ++++++|.++.. += ..+.+.+.+. +...+....+.||.... ...+... ++.
T Consensus 57 lavPv~~~~~~l~~l~~~~~~l~~~~iVtDVgS-vK----~~i~~~~~~~-~~~fVG~HPMaG~E~s~-lf~g~~~-ilt 128 (370)
T PRK08818 57 FSAPIRHTAALIEEYVALAGGRAAGQLWLDVTS-IK----QAPVAAMLAS-QAEVVGLHPMTAPPKSP-TLKGRVM-VVC 128 (370)
T ss_pred EeCCHHHHHHHHHHHhhhhcCCCCCeEEEECCC-Cc----HHHHHHHHhc-CCCEEeeCCCCCCCCCc-ccCCCeE-EEe
Confidence 999999999999999876 789999988763 11 1122222221 11111222344554321 2344433 222
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHH
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA 317 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ka 317 (460)
.....+..+.++++++..|.++...+--.++.....
T Consensus 129 p~~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~ 164 (370)
T PRK08818 129 EARLQHWSPWVQSLCSALQAECVYATPEHHDRVMAL 164 (370)
T ss_pred CCCchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHH
Confidence 233445578899999999988887665555544433
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.6e-08 Score=94.46 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=100.9
Q ss_pred CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 153 LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 153 ~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
++|++|+|++++++.+.+.. ++.++++..++++++|+||+|||++.+.++++++.+.+.++++||++
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~-------------g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~ 76 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKEL-------------GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISI 76 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHc-------------CcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEe
Confidence 78999999998888776541 13455677787889999999999999999999998877778899999
Q ss_pred ccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCCh
Q 012596 233 SKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDV 309 (460)
Q Consensus 233 ~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~Di 309 (460)
..|+..+ .+.+.++.. ...+...|+.+..+..|. +.+..+. .+.+..+.++++|+..|..+...++.
T Consensus 77 ~agi~~~-------~l~~~~~~~--~~ivR~mPn~~~~~~~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~ 144 (245)
T TIGR00112 77 AAGVTLE-------KLSQLLGGT--RRVVRVMPNTPAKVGAGV-TAIAANANVSEEDRALVLALFKAVGEVVELPEAL 144 (245)
T ss_pred cCCCCHH-------HHHHHcCCC--CeEEEECCChHHHHhCCe-EEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence 9999875 355566531 135788999887776553 3333332 34567789999999999888776553
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=107.80 Aligned_cols=159 Identities=14% Similarity=0.259 Sum_probs=118.4
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
++..+.++|+|+ -.-.++||.++... +...+.+|.++.+.| . |..-|.. +... ..++|+|+|+|++|
T Consensus 104 ~krgI~V~nvp~-~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~---~~~~~~~--g~~~--~gK~vgilG~G~IG 174 (336)
T KOG0069|consen 104 RKRGIRVANVPD-VLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-G---WAGGWPL--GYDL--EGKTVGILGLGRIG 174 (336)
T ss_pred HhcCceEeccCC-cchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-c---ccCCccc--cccc--cCCEEEEecCcHHH
Confidence 567789999999 78889999988733 888899999999988 2 3333332 2223 35899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE- 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~- 217 (460)
..+|.+|..-| ..+..+.|++...+...+.+.. ..|.++.+..+|+|++++|.+ .+.++++
T Consensus 175 ~~ia~rL~~Fg--~~i~y~~r~~~~~~~~~~~~~~---------------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk 237 (336)
T KOG0069|consen 175 KAIAKRLKPFG--CVILYHSRTQLPPEEAYEYYAE---------------FVDIEELLANSDVIVVNCPLTKETRHLINK 237 (336)
T ss_pred HHHHHhhhhcc--ceeeeecccCCchhhHHHhccc---------------ccCHHHHHhhCCEEEEecCCCHHHHHHhhH
Confidence 99999999865 6777778876544444333211 126778889999999999965 5788875
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
++...++++.+||++..|-..+. +.+.+.+.
T Consensus 238 ~~~~~mk~g~vlVN~aRG~iide-~~l~eaL~ 268 (336)
T KOG0069|consen 238 KFIEKMKDGAVLVNTARGAIIDE-EALVEALK 268 (336)
T ss_pred HHHHhcCCCeEEEeccccccccH-HHHHHHHh
Confidence 57888999999999999876653 23344443
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=109.73 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=97.1
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMA 143 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A 143 (460)
+.++.|+|.|. +...++||+..... ...|+ .+.++ ..++|||||+|+||..+|
T Consensus 79 ~~gI~v~napg-~na~aVAE~v~~~lL~l~r~-----------------------~g~~l--~gktvGIIG~G~IG~~va 132 (381)
T PRK00257 79 EAGITWSSAPG-CNARGVVDYVLGSLLTLAER-----------------------EGVDL--AERTYGVVGAGHVGGRLV 132 (381)
T ss_pred HCCCEEEECCC-cChHHHHHHHHHHHHHHhcc-----------------------cCCCc--CcCEEEEECCCHHHHHHH
Confidence 56899999998 99999999988744 22221 01123 368999999999999999
Q ss_pred HHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-----cHHHHH-H
Q 012596 144 AHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-----FSSSFL-E 217 (460)
Q Consensus 144 ~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-----~~~~vl-~ 217 (460)
.+|..-| ++|.+||+..... .+ .. ...++++++++||+|++++|.+ .+..++ +
T Consensus 133 ~~l~a~G--~~V~~~Dp~~~~~-----~~-------------~~-~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~ 191 (381)
T PRK00257 133 RVLRGLG--WKVLVCDPPRQEA-----EG-------------DG-DFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE 191 (381)
T ss_pred HHHHHCC--CEEEEECCccccc-----cc-------------Cc-cccCHHHHHhhCCEEEEeCcCCCCccccccccCCH
Confidence 9999888 9999999754211 01 01 1237889899999999999964 366666 3
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 192 ~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 192 AFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred HHHhcCCCCeEEEECCCCcccCH
Confidence 46677899999999999877664
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-09 Score=109.56 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=97.1
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMA 143 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A 143 (460)
+.++.|+|.|. +...++||+..... ...|+ . +.++ ..++|||||+|+||+.+|
T Consensus 79 ~~gI~v~napg-~na~aVAE~~~~~lL~l~r~-------~----------------g~~L--~gktvGIIG~G~IG~~vA 132 (378)
T PRK15438 79 QAGIGFSAAPG-CNAIAVVEYVFSSLLMLAER-------D----------------GFSL--HDRTVGIVGVGNVGRRLQ 132 (378)
T ss_pred HCCCEEEECCC-cCchHHHHHHHHHHHHHhcc-------C----------------CCCc--CCCEEEEECcCHHHHHHH
Confidence 56899999998 99999999998744 22221 0 0123 468999999999999999
Q ss_pred HHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-----HHHHH-H
Q 012596 144 AHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-----SSSFL-E 217 (460)
Q Consensus 144 ~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-----~~~vl-~ 217 (460)
++|..-| .+|.+||+.... .+. . ....+++++++.||+|++++|.+. +..++ +
T Consensus 133 ~~l~a~G--~~V~~~dp~~~~------~~~------------~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~ 191 (378)
T PRK15438 133 ARLEALG--IKTLLCDPPRAD------RGD------------E-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE 191 (378)
T ss_pred HHHHHCC--CEEEEECCcccc------ccc------------c-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH
Confidence 9999877 999999975321 010 0 012378999999999999999543 56666 4
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 192 ~~l~~mk~gailIN~aRG~vVDe 214 (378)
T PRK15438 192 KLIRSLKPGAILINACRGAVVDN 214 (378)
T ss_pred HHHhcCCCCcEEEECCCchhcCH
Confidence 56777899999999999977664
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=100.06 Aligned_cols=171 Identities=19% Similarity=0.231 Sum_probs=107.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh---cC----CCccCCCC---CCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---HC----NCRYFPEQ---KLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~---g~----~~~~~~~~---~l~~~i~a~~~~~e 195 (460)
..+||+|||+|.||+.+|..++.+| ++|+++|++++.+++.... .+ ....+.+. ..-..+..++++.
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G--~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~- 78 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAG--YDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA- 78 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcC--CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-
Confidence 4689999999999999999999988 9999999997754332211 00 00001110 1123455556665
Q ss_pred hcCCCcEEEEccchh-c-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC-CCCEEEEECcccHHHHh
Q 012596 196 ALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQPFIALSGPSFALELM 272 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~-~~~~~v~~gP~~a~e~~ 272 (460)
++++||+||-+++.. . -.+++.++-.++++++++-+-+.++.+.. +.+....+ .........|.....+
T Consensus 79 ~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~-------ia~~~~rper~iG~HFfNP~~~m~L- 150 (307)
T COG1250 79 ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITE-------LAEALKRPERFIGLHFFNPVPLMPL- 150 (307)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHH-------HHHHhCCchhEEEEeccCCCCccee-
Confidence 579999999999964 3 46788999999999999888877777642 22222211 0111123444433211
Q ss_pred ccCCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 273 NKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 273 ~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
.-++-+. .+.+.++++.++..+.|..+....|..|
T Consensus 151 ----VEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG 186 (307)
T COG1250 151 ----VEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPG 186 (307)
T ss_pred ----EEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc
Confidence 1111221 3578899999999988854455455443
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-09 Score=109.04 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=128.7
Q ss_pred CeEEEECcchHHH-HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-CccCCCC---CCCCceEEeC--CHHh---hc
Q 012596 128 NKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CRYFPEQ---KLPENVIATT--DAKT---AL 197 (460)
Q Consensus 128 ~kI~IIGaG~mG~-~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~-~~~~~~~---~l~~~i~a~~--~~~e---a~ 197 (460)
|||.++|+|+||+ .++..|.++| ++|+++++++.++++++++|.- ....+.. ..-.++.... +.++ .+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~ 78 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAI 78 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHh
Confidence 7899999999998 5588999988 9999999999999999998741 1111111 1111233331 2222 34
Q ss_pred CCCcEEEEccchhcHHHHHHHhhhcCCCC--------CeEEEeccCCccchhhhHHHHHHHHh------------CCCCC
Q 012596 198 LGADYCLHAMPVQFSSSFLEGISDYVDPG--------LPFISLSKGLELNTLRMMSQIIPQAL------------RNPRQ 257 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i~~~l~~~--------~iIV~~~~Gi~~~~~~~l~e~l~~~l------------g~~~~ 257 (460)
.++|+|+++|+....+.+...|.+.+.+. -.|++|.||..+.. .+.+.+.+.. +-. .
T Consensus 79 ~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~--~L~~~V~~~~~~~~~~wi~~~~~f~-~ 155 (381)
T PRK02318 79 AEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTS--FLKKHVLKALSEDEKAWLEEHVGFV-D 155 (381)
T ss_pred cCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHH--HHHHHHHHhCCHHHHHHHHhcCCCC-C
Confidence 58899999999888777776665544332 37899999998753 3333332211 100 0
Q ss_pred CEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCC-----ceEEEcCChHHHHHHHHHHHH-HHH---HHHH
Q 012596 258 PFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKH-----LRISTSSDVTGVEIAGALKNV-LAI---AAGI 328 (460)
Q Consensus 258 ~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g-----~~v~~~~Di~g~~~~kalkNv-~ai---~~g~ 328 (460)
..+-..+|.... .+ .. .+.. +...+.+.+-++..+ ..+.+++|+...+|.|+..|. .+. ..|.
T Consensus 156 t~VDrI~P~~~~---~d-~~--~v~~--E~f~~wviE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~ 227 (381)
T PRK02318 156 SAVDRIVPAQKN---ED-PL--DVTV--EPFSEWIVDKTQFKGALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGY 227 (381)
T ss_pred cHHhcCCCCCCc---cC-Cc--cccc--ccceEEEEecccccCCCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHH
Confidence 111223341100 00 00 0000 000011111111111 257888999999999998653 222 2344
Q ss_pred Hhccc-----CCCcHHHHHHHHHHHHHHHHHH-HcCCCccc
Q 012596 329 VVGMN-----LGNNSMAALVAQGCSEIRWLAT-KMGAKPAT 363 (460)
Q Consensus 329 ~~~~k-----l~~n~~~al~~~~~~E~~~la~-a~Gi~~~~ 363 (460)
..|.+ +.+.....++...+.|+..++. +.|++++.
T Consensus 228 l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~g~~~~~ 268 (381)
T PRK02318 228 LKGYKTIREAILDPSIRAVVKGALEESGAVLIKKYGFDKEE 268 (381)
T ss_pred HcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcCCcCHHH
Confidence 33332 3355667889999999999995 56886543
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-08 Score=110.09 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=111.2
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCCC---CCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPEQ---KLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La-~~G~~~~V~v~~r~~~~~~~l~~~g-------~~~~~~~~~---~l~~~i~a~~~~~e 195 (460)
.+||+|||+|.||..+|..++ .+| ++|+++|.+++.+++..+.- .....+... ....++..+++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 380 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAG--IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR- 380 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-
Confidence 468999999999999999998 589 99999999987654432110 000000000 1124577888885
Q ss_pred hcCCCcEEEEccchh-c-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHh
Q 012596 196 ALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELM 272 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~ 272 (460)
++++||+||-++|.. . -.+++.++.+++++++++.+-+.++.... +.+.+..+. .-......|.+...
T Consensus 381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~-------la~~~~~p~r~~g~HffnP~~~~~-- 451 (699)
T TIGR02440 381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ-------IAAAASRPENVIGLHYFSPVEKMP-- 451 (699)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH-------HHHhcCCcccEEEEecCCccccCc--
Confidence 579999999999964 3 46788999999999999988877777642 233222211 11112223332211
Q ss_pred ccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 273 NKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 273 ~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
..-++.+ ..+++.++.+..++...|...+...|..|.
T Consensus 452 ---lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGf 489 (699)
T TIGR02440 452 ---LVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGF 489 (699)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccch
Confidence 1112222 235788999999999999887777786654
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.9e-09 Score=95.50 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=73.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|||||+|.+|..+|.+|..-| .+|++|+|...........+ + ...+++++++.||+|++
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~~~--------------~-~~~~l~ell~~aDiv~~ 97 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADEFG--------------V-EYVSLDELLAQADIVSL 97 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHTT--------------E-EESSHHHHHHH-SEEEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhccccc--------------c-eeeehhhhcchhhhhhh
Confidence 3689999999999999999999777 99999999986554333322 2 23488999999999999
Q ss_pred ccchh-cHHHHH-HHhhhcCCCCCeEEEeccCCccch
Q 012596 206 AMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 206 aVp~~-~~~~vl-~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
++|.+ .+..++ .+....+++++++|+++.|-..+.
T Consensus 98 ~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde 134 (178)
T PF02826_consen 98 HLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDE 134 (178)
T ss_dssp -SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-H
T ss_pred hhccccccceeeeeeeeeccccceEEEeccchhhhhh
Confidence 99954 455555 345677889999999999866653
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=88.96 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccC----CCcHHHHHHHHHHHHHHHHHHHcCCCccc--cccccCCCceeeecccCC
Q 012596 308 DVTGVEIAGALKNVLAIAAGIVVGMNL----GNNSMAALVAQGCSEIRWLATKMGAKPAT--ITGLSGTGDIMLTCFVNL 381 (460)
Q Consensus 308 Di~g~~~~kalkNv~ai~~g~~~~~kl----~~n~~~al~~~~~~E~~~la~a~Gi~~~~--~~~~~~~gd~~~t~~s~~ 381 (460)
||.+..|.|++.|....+.+...+..+ .+.....++...+.|+.+++++.|+..+. +.+. ....+....
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~-----~~~~~~~~~ 75 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEEA-----IERLIRSTP 75 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHH-----HHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHHH-----HHHHHHhcC
Confidence 678889999999976555444444433 34556789999999999999999976432 2211 000011111
Q ss_pred CccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhc
Q 012596 382 SRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 382 srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
....++-+|+.+|+++| .....|+++++|+++|+++|+++.+|++++.
T Consensus 76 ~~~~SM~~D~~~gr~tE-----------id~i~G~vv~~a~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 76 DNRSSMLQDIEAGRPTE-----------IDYINGYVVRLAKKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp TT--HHHHHHHTTB--S-----------HHHTHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred CccccHHHHHHHccccc-----------HHHHHHHHHHHHHHHCCCCcHHHHHHHHHHH
Confidence 12235678888887764 3467899999999999999999999999874
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-08 Score=109.30 Aligned_cols=171 Identities=14% Similarity=0.146 Sum_probs=112.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea 196 (460)
..||+|||+|.||..+|..++.+| ++|+++|++++.+++..+. ......+... ....+++.+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 389 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKG--VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG- 389 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence 468999999999999999999999 9999999998865432111 0000001110 11246788888854
Q ss_pred cCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHhc
Q 012596 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELMN 273 (460)
Q Consensus 197 ~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~~ 273 (460)
+++||+||-+++.. .-.+++.++.++++++++|.+-+.++.... +.+.+..+. .-...+..|.+...
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~-------la~~~~~p~r~~g~Hff~P~~~~~--- 459 (715)
T PRK11730 390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISL-------LAKALKRPENFCGMHFFNPVHRMP--- 459 (715)
T ss_pred hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH-------HHhhcCCCccEEEEecCCcccccc---
Confidence 79999999999964 346788999999999999888777776542 333333211 11112334432221
Q ss_pred cCCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 274 g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
..-++.+. .+++.++.+..++...|...+...|..|.
T Consensus 460 --lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 460 --LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred --eEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 11122222 36788999999999988777776776654
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-08 Score=95.37 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=133.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDiV 203 (460)
.+.||.||++.||..++.+.++.| +.|.+|+|+..+++.+.++..+ +.+ +--..++++. ++....|
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~G--f~v~~yNRT~skvD~flaneak-----~~~----i~ga~S~ed~v~klk~PR~i 74 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKG--FTVCAYNRTTSKVDEFLANEAK-----GTK----IIGAYSLEDFVSKLKKPRVI 74 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccC--ceEEEeccchHhHHHHHHHhhc-----CCc----ccCCCCHHHHHHhcCCCcEE
Confidence 378999999999999999999999 9999999999999887665322 111 1122355554 4678999
Q ss_pred EEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEE-ECcccHHHHhccCCeEEEE
Q 012596 204 LHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 204 ilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~-~gP~~a~e~~~g~~~~i~i 281 (460)
++.||+. .++.++++|.+++.+|.+||+-.|.-.++|.+...+..+. | +-++ .|..-++|.+.-.|. .+
T Consensus 75 illvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~--G-----ilfvG~GVSGGEEGAR~GPS--lM 145 (487)
T KOG2653|consen 75 ILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKK--G-----ILFVGSGVSGGEEGARYGPS--LM 145 (487)
T ss_pred EEEeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhc--C-----cEEEecCccCcccccccCCc--cC
Confidence 9999975 5888999999999999999998887777765554443322 3 1222 233323333333343 34
Q ss_pred ccCCHHHHHHHHHHHhcC-------CceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHH
Q 012596 282 ASKDRKLANAVQQLLASK-------HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~-------g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la 354 (460)
-|++.++...++++|... .-.+.+.++- |. +-.+| -.-++..||+ .+.+.|++.+.
T Consensus 146 pGg~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~-Ga--GhfVK-------MVHNGIEYGD-------MqLI~EaY~vl 208 (487)
T KOG2653|consen 146 PGGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEG-GA--GHFVK-------MVHNGIEYGD-------MQLICEAYDVL 208 (487)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCCCeeeecCC-CC--ccchh-------hhccCcccch-------HHHHHHHHHHH
Confidence 556788888899888742 2223333331 00 00001 0113444554 46889999999
Q ss_pred HH-cCCCcccccc
Q 012596 355 TK-MGAKPATITG 366 (460)
Q Consensus 355 ~a-~Gi~~~~~~~ 366 (460)
+. .|+.-+.+.+
T Consensus 209 k~~~gls~~eia~ 221 (487)
T KOG2653|consen 209 KSVLGLSNDEIAE 221 (487)
T ss_pred HHhcCCcHHHHHH
Confidence 98 7777655544
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-08 Score=108.24 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=112.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea 196 (460)
.+||+|||+|.||..+|..++.+| ++|+++|++++.+++..+. ......+... ....++..+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 389 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKG--TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG- 389 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence 578999999999999999999999 9999999999866543211 0000000000 11235777788854
Q ss_pred cCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHhc
Q 012596 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELMN 273 (460)
Q Consensus 197 ~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~~ 273 (460)
+++||+||-+|+.. .-.+++.++.+.+++++++.+-+.++.... +.+.+..+. .-......|.+...
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~-------ia~~~~~p~r~ig~Hff~P~~~~~--- 459 (714)
T TIGR02437 390 FDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISL-------LAKALKRPENFCGMHFFNPVHRMP--- 459 (714)
T ss_pred hcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCcccEEEEecCCCcccCc---
Confidence 79999999999964 346789999999999999988777776642 233332211 11112233433221
Q ss_pred cCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 274 KLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 274 g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
..-++.+ ..+++.++.+.+++...|.......|..|.
T Consensus 460 --lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 460 --LVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred --eEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 1111222 235788999999999998887777776553
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-08 Score=109.65 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=111.4
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCC---CCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPE---QKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La-~~G~~~~V~v~~r~~~~~~~l~~~-------g~~~~~~~~---~~l~~~i~a~~~~~e 195 (460)
.+||+|||+|.||..+|..++ .+| ++|+++|++++.+++..+. ......+.. .....++..+++.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAG--LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR- 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence 478999999999999999999 888 9999999998755432211 000000000 01124678888885
Q ss_pred hcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHh
Q 012596 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELM 272 (460)
Q Consensus 196 a~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~ 272 (460)
++++||+||-+++.. .-.+++.++.+++++++++.+-+.++.... +.+.+..+. .-...+..|.+...
T Consensus 386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~-------la~~~~~p~r~ig~Hff~P~~~~~-- 456 (708)
T PRK11154 386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ-------IAAAAARPEQVIGLHYFSPVEKMP-- 456 (708)
T ss_pred HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHHhcCcccceEEEecCCccccCc--
Confidence 579999999999964 346789999999999999988887777642 233222211 11112234433221
Q ss_pred ccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 273 NKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 273 ~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
..-++.+ ..+++.++.+..++...|.......|..|.
T Consensus 457 ---lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGf 494 (708)
T PRK11154 457 ---LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGF 494 (708)
T ss_pred ---eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCcH
Confidence 1122222 236788999999999888776666675543
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=99.61 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=74.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++|+|||+|+||.++|.+|.+.| ++|++|+|.....+.....|. .. .+++++++.||+|++
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G--~~ViV~~r~~~s~~~A~~~G~--------------~v-~sl~Eaak~ADVV~l 77 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSG--VEVVVGVRPGKSFEVAKADGF--------------EV-MSVSEAVRTAQVVQM 77 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCc--CEEEEEECcchhhHHHHHcCC--------------EE-CCHHHHHhcCCEEEE
Confidence 4589999999999999999999999 999999876433333333332 22 278899999999999
Q ss_pred ccchhcHHHHH-HHhhhcCCCCCeEEEeccCCccc
Q 012596 206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 206 aVp~~~~~~vl-~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
++|.....+++ +++.+.++++++++ .+-|+...
T Consensus 78 lLPd~~t~~V~~~eil~~MK~GaiL~-f~hgfni~ 111 (335)
T PRK13403 78 LLPDEQQAHVYKAEVEENLREGQMLL-FSHGFNIH 111 (335)
T ss_pred eCCChHHHHHHHHHHHhcCCCCCEEE-ECCCccee
Confidence 99986667777 46889999887554 55677653
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.7e-08 Score=108.15 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=112.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCCC---CCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPEQ---KLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g-------~~~~~~~~~---~l~~~i~a~~~~~e 195 (460)
...+|+|||+|.||..+|..++.+| ++|+++|++++.+++..+.- .....+... .....+..++|.+
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 410 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKG--LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS- 410 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCC--CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-
Confidence 3578999999999999999999999 99999999998765432210 000000000 1124677788886
Q ss_pred hcCCCcEEEEccchh-c-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC-CEEEEECcccHHHHh
Q 012596 196 ALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-PFIALSGPSFALELM 272 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~-~~~v~~gP~~a~e~~ 272 (460)
++++||+||-+|+.. . -.+++.++.+++++++++.+-+.++... .+.+.+..+.. -......|.+...
T Consensus 411 ~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p~r~ig~Hff~P~~~m~-- 481 (737)
T TIGR02441 411 GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK-------DIAAVSSRPEKVIGMHYFSPVDKMQ-- 481 (737)
T ss_pred HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCccceEEEeccCCcccCc--
Confidence 479999999999964 3 4678999999999999998877777664 23333332111 1112233433221
Q ss_pred ccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 273 NKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 273 ~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
..-++.+ ..+.+.++.+..++...|...+...|..|
T Consensus 482 ---LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG 518 (737)
T TIGR02441 482 ---LLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG 518 (737)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC
Confidence 1112222 23578899999999998888777777655
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=89.27 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=70.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|+|||.|..|.+.|.+|.+.| .+|++..|... ..++..+.|.. + .+.+|+++.+|+|+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG--~~V~Vglr~~s~s~~~A~~~Gf~--------------v-~~~~eAv~~aDvV~ 65 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSG--VNVIVGLREGSASWEKAKADGFE--------------V-MSVAEAVKKADVVM 65 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT-E--------------C-CEHHHHHHC-SEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC--CCEEEEecCCCcCHHHHHHCCCe--------------e-ccHHHHHhhCCEEE
Confidence 4589999999999999999999999 89999988876 56666666642 1 26788999999999
Q ss_pred EccchhcHHHHH-HHhhhcCCCCCeEEEeccCCc
Q 012596 205 HAMPVQFSSSFL-EGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 205 laVp~~~~~~vl-~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+.+|+....+++ ++|.+.+++|+.++- +-|+.
T Consensus 66 ~L~PD~~q~~vy~~~I~p~l~~G~~L~f-ahGfn 98 (165)
T PF07991_consen 66 LLLPDEVQPEVYEEEIAPNLKPGATLVF-AHGFN 98 (165)
T ss_dssp E-S-HHHHHHHHHHHHHHHS-TT-EEEE-SSSHH
T ss_pred EeCChHHHHHHHHHHHHhhCCCCCEEEe-CCcch
Confidence 999999999988 789999999987664 44554
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=94.99 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHH-------HHH----H-------HhhcCCCccCCCC---CCCCceEEeCC--HH
Q 012596 138 FGTAMAAHVANKKSQLKVYMLMRDPAV-------CQS----I-------NEKHCNCRYFPEQ---KLPENVIATTD--AK 194 (460)
Q Consensus 138 mG~~~A~~La~~G~~~~V~v~~r~~~~-------~~~----l-------~~~g~~~~~~~~~---~l~~~i~a~~~--~~ 194 (460)
||..+|..++.+| ++|++||++++. +++ + .+.|. +... ....++..+++ +.
T Consensus 1 MG~giA~~~a~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~----~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFAG--HDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGR----IDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhCC--CeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCC----CChhhHHHHHhCeEeecCcchH
Confidence 7999999999999 999999999842 111 1 11111 1000 11235666544 66
Q ss_pred hhcCCCcEEEEccchh-cH-HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHH
Q 012596 195 TALLGADYCLHAMPVQ-FS-SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALEL 271 (460)
Q Consensus 195 ea~~~aDiVilaVp~~-~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~-~~v~~gP~~a~e~ 271 (460)
+++++||+||.||+.. .+ ..++.++.+.+++++++.+.+.++... .+.+.+..+... ......|.+...
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~-------~la~~~~~p~r~~g~Hf~~Pp~~~~- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVT-------DLQRHVAHPERFLNAHWLNPAYLMP- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHH-------HHHhhcCCcccEEEEecCCccccCc-
Confidence 7789999999999964 34 457788888899999887666555443 233332211000 011122221110
Q ss_pred hccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350 (460)
Q Consensus 272 ~~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~ 350 (460)
..-++-+ +.+.+.++++.+++...|..+...+|..| +....+....++|+
T Consensus 147 ----lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G-------------------------fi~nri~~~~l~EA 197 (314)
T PRK08269 147 ----LVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG-------------------------YIVPRIQALAMNEA 197 (314)
T ss_pred ----eEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC-------------------------cchHHHHHHHHHHH
Confidence 0011111 34788999999999999988777676432 12345667789999
Q ss_pred HHHHHHcCCCcccccc
Q 012596 351 RWLATKMGAKPATITG 366 (460)
Q Consensus 351 ~~la~a~Gi~~~~~~~ 366 (460)
+.++++.|++++++..
T Consensus 198 l~l~e~g~~~~e~iD~ 213 (314)
T PRK08269 198 ARMVEEGVASAEDIDK 213 (314)
T ss_pred HHHHHhCCCCHHHHHH
Confidence 9999999999887654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.5e-07 Score=88.17 Aligned_cols=156 Identities=20% Similarity=0.211 Sum_probs=97.6
Q ss_pred HHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHhhh
Q 012596 142 MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD 221 (460)
Q Consensus 142 ~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~ 221 (460)
+|..|.++|..+.|+.||++++.++...+.|... ...++ .++++++|+||+|||...+.++++++.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~------------~~~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~ 67 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID------------EASTD-IEAVEDADLVVLAVPVSAIEDVLEEIAP 67 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS------------EEESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee------------eccCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhh
Confidence 6888999986689999999998887776666421 22333 4668999999999999999999999999
Q ss_pred cCCCCCeEEEeccCCccchhhhHHHHHHHHhC--CCCCCEEEEECcccHH------HHhccCCeEEEEcc-CCHHHHHHH
Q 012596 222 YVDPGLPFISLSKGLELNTLRMMSQIIPQALR--NPRQPFIALSGPSFAL------ELMNKLPTAMVVAS-KDRKLANAV 292 (460)
Q Consensus 222 ~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg--~~~~~~~v~~gP~~a~------e~~~g~~~~i~i~~-~d~~~~~~l 292 (460)
+++++++|++++. +- ..+.+.+.+.++ ..++....+.||.... +...|....++... .+.+.++.+
T Consensus 68 ~~~~~~iv~Dv~S-vK----~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~ 142 (258)
T PF02153_consen 68 YLKPGAIVTDVGS-VK----APIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV 142 (258)
T ss_dssp GS-TTSEEEE--S--C----HHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred hcCCCcEEEEeCC-CC----HHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence 9999999998763 21 133344555444 1123344566773211 22345443333232 345789999
Q ss_pred HHHHhcCCceEEEcCChHHHHHH
Q 012596 293 QQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 293 ~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
++++...|.++...+--.+....
T Consensus 143 ~~l~~~~Ga~~~~~~~eeHD~~~ 165 (258)
T PF02153_consen 143 EELWEALGARVVEMDAEEHDRIM 165 (258)
T ss_dssp HHHHHHCT-EEEE--HHHHHHHH
T ss_pred HHHHHHCCCEEEEcCHHHHHHHH
Confidence 99999999988776544444433
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.8e-08 Score=94.67 Aligned_cols=147 Identities=13% Similarity=0.201 Sum_probs=105.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
.++..+-|.|. |+|+++||+..... +-+..++-..+.+.|++ .-+ .+.+++ .+++||+|.|.+|+
T Consensus 91 e~gi~Vvn~P~-~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr------~~~--~G~el~--GKTLgvlG~GrIGs 159 (406)
T KOG0068|consen 91 ENGILVVNTPT-ANSRSAAELTIGLILSLARQIGQASASMKEGKWNR------VKY--LGWELR--GKTLGVLGLGRIGS 159 (406)
T ss_pred hCCeEEEeCCC-CChHHHHHHHHHHHHHHhhhcchhheeeecCceee------cce--eeeEEe--ccEEEEeecccchH
Confidence 46789999999 99999999987633 44444444455665543 322 234464 68999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-H
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-G 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~-~ 218 (460)
-.|.++..-| ..|+.||.-.. .+.....| ++.. +.+|++..||+|-+.+|.. .++.++. +
T Consensus 160 eVA~r~k~~g--m~vI~~dpi~~-~~~~~a~g--------------vq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~ 221 (406)
T KOG0068|consen 160 EVAVRAKAMG--MHVIGYDPITP-MALAEAFG--------------VQLV-SLEEILPKADFITLHVPLTPSTEKLLNDE 221 (406)
T ss_pred HHHHHHHhcC--ceEEeecCCCc-hHHHHhcc--------------ceee-eHHHHHhhcCEEEEccCCCcchhhccCHH
Confidence 9999999877 67877775321 12222223 2322 6889999999999999954 5777764 4
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++|..||++++|-..++
T Consensus 222 tfA~mKkGVriIN~aRGGvVDe 243 (406)
T KOG0068|consen 222 TFAKMKKGVRIINVARGGVVDE 243 (406)
T ss_pred HHHHhhCCcEEEEecCCceech
Confidence 5667889999999999876654
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.1e-07 Score=84.49 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=111.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHH-HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQS-INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~-l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
|+|+|||+|.|..+++..+.+.|. ...+..+..+...... +...|. ..+.+..+.++.+|+++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~--------------~~~~~n~~~~~~s~v~~ 66 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGV--------------KTVFTNLEVLQASDVVF 66 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCc--------------eeeechHHHHhhcccee
Confidence 689999999999999999999884 2344445443222222 343332 22223367788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS- 283 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~- 283 (460)
++||.+.+..++.++...+..+.+|+++.-|+...+ +.+.++. ..-.+...|+.+..+..|.. .+..+.
T Consensus 67 ~svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~-------l~~~l~~--~~rviRvmpNtp~~v~eg~s-v~~~g~~ 136 (267)
T KOG3124|consen 67 LSVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSS-------LESKLSP--PTRVIRVMPNTPSVVGEGAS-VYAIGCH 136 (267)
T ss_pred EeecchhHHHHhhcCccccccceEEEEEeecccHHH-------HHHhcCC--CCceEEecCCChhhhhcCcE-EEeeCCC
Confidence 999999999999999887777899999998887653 3444442 12346778888877766643 223332
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChH
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVT 310 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~ 310 (460)
...+..+.++++|+..|+.....++.+
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~evpE~~i 163 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCEEVPEKCI 163 (267)
T ss_pred cchhhHHHHHHHHHhcCcceeCcHHhh
Confidence 234566889999999999988877644
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=86.45 Aligned_cols=159 Identities=12% Similarity=0.103 Sum_probs=104.6
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADY 202 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDi 202 (460)
++...+|||||.|+||..+|..|.++| +.|...+|.+ .-+..++.|.. ..+.+.+.+ +..|+
T Consensus 49 ~k~tl~IaIIGfGnmGqflAetli~aG--h~li~hsRsd-yssaa~~yg~~--------------~ft~lhdlcerhpDv 111 (480)
T KOG2380|consen 49 WKATLVIAIIGFGNMGQFLAETLIDAG--HGLICHSRSD-YSSAAEKYGSA--------------KFTLLHDLCERHPDV 111 (480)
T ss_pred cccceEEEEEecCcHHHHHHHHHHhcC--ceeEecCcch-hHHHHHHhccc--------------ccccHHHHHhcCCCE
Confidence 344689999999999999999999999 9999999987 22222333321 112333333 57899
Q ss_pred EEEccchhcHHHHHHHhhhc-CCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC--CCEEEEECcccHHHHhccCCeEE
Q 012596 203 CLHAMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTAM 279 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~-l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~--~~~~v~~gP~~a~e~~~g~~~~i 279 (460)
|++||....++.++...-.. ++.++++++...--.++ .+.+.+.++... .-...+.||....+-.+|.+-.+
T Consensus 112 vLlctsilsiekilatypfqrlrrgtlfvdvlSvKefe-----k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVy 186 (480)
T KOG2380|consen 112 VLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEFE-----KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVY 186 (480)
T ss_pred EEEEehhhhHHHHHHhcCchhhccceeEeeeeecchhH-----HHHHHHhCccccceEeecCCcCCCcCCCccccCceEE
Confidence 99999999999988777554 77889988765422222 234455555421 11224578875554445544321
Q ss_pred E---Ec--cCCHHHHHHHHHHHhcCCceEE
Q 012596 280 V---VA--SKDRKLANAVQQLLASKHLRIS 304 (460)
Q Consensus 280 ~---i~--~~d~~~~~~l~~lL~~~g~~v~ 304 (460)
. ++ ....+.++.+.++|...|.+..
T Consensus 187 dkvRig~~~~r~ercE~fleIf~cegckmV 216 (480)
T KOG2380|consen 187 DKVRIGYAASRPERCEFFLEIFACEGCKMV 216 (480)
T ss_pred EEeeccccccchHHHHHHHHHHHhcCCeEE
Confidence 1 11 1237889999999998887754
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=85.60 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=68.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~-V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||||+|||+|.||..++..|.+.+.+.+ +.+||+++++++.+.+.. +....++.++++.++|+|++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-------------~~~~~~~~~ell~~~DvVvi 67 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-------------GAKACLSIDELVEDVDLVVE 67 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-------------CCeeECCHHHHhcCCCEEEE
Confidence 4799999999999999999987531245 558899998877766531 12345688887789999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
|+|.....++...+.+ .|..++.++.|
T Consensus 68 ~a~~~~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 68 CASVNAVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred cCChHHHHHHHHHHHH---cCCCEEEEchH
Confidence 9998888777666544 34445555544
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-06 Score=80.43 Aligned_cols=126 Identities=13% Similarity=0.261 Sum_probs=78.8
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|||. |.||..++..|.++| +.|+ +++||+||+|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g--~~v~----------------------------------------~~~~DlVila 38 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG--LGVY----------------------------------------IKKADHAFLS 38 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC--CEEE----------------------------------------ECCCCEEEEe
Confidence 68999999 999999999999999 7775 1468999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-cCC
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-SKD 285 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~-~~d 285 (460)
+|...+.++++++. .+|+++.. += ..+.+...+.+| ...+.||..+..... . ..++.. ..+
T Consensus 39 vPv~~~~~~i~~~~------~~v~Dv~S-vK----~~i~~~~~~~vg-----~HPMfGp~~a~~~lf-~-~~iv~~~~~~ 100 (197)
T PRK06444 39 VPIDAALNYIESYD------NNFVEISS-VK----WPFKKYSGKIVS-----IHPLFGPMSYNDGVH-R-TVIFINDISR 100 (197)
T ss_pred CCHHHHHHHHHHhC------CeEEeccc-cC----HHHHHhcCCEEe-----cCCCCCCCcCccccc-c-eEEEECCCCC
Confidence 99999888887764 25666542 11 011111111222 223447766542111 1 222232 334
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChHHHHHH
Q 012596 286 RKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
++..+.++++++ |.++...+--.+++..
T Consensus 101 ~~~~~~~~~l~~--G~~~~~~t~eeHD~~~ 128 (197)
T PRK06444 101 DNYLNEINEMFR--GYHFVEMTADEHDLLM 128 (197)
T ss_pred HHHHHHHHHHHc--CCEEEEeCHHHHHHHH
Confidence 566788999998 6677665544444433
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=85.60 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=67.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+++||||||+|.||..++..|.+...+++|. +|+|++++.+.+.+.... ....+++++++.++|+|+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~------------~~~~~~~eell~~~D~Vv 72 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR------------PPPVVPLDQLATHADIVV 72 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC------------CcccCCHHHHhcCCCEEE
Confidence 4589999999999999999998741126766 889998887766553110 123457888888999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+|.....++..... +.|..++..+.
T Consensus 73 i~tp~~~h~e~~~~aL---~aGk~Vi~~s~ 99 (271)
T PRK13302 73 EAAPASVLRAIVEPVL---AAGKKAIVLSV 99 (271)
T ss_pred ECCCcHHHHHHHHHHH---HcCCcEEEecc
Confidence 9999887777665544 34555555543
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-05 Score=75.75 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=103.7
Q ss_pred CCeEEEECcch--------------------HHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCC
Q 012596 127 TNKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQ 181 (460)
Q Consensus 127 ~~kI~IIGaG~--------------------mG~~~A~~La~~G~~~~V~v~~r~~~-----~~~~l~~~g~~~~~~~~~ 181 (460)
+|||+|.|+|+ -|..||..++++| |||++.+.+.+ +.+++...|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG--HDVVLaePn~d~~dd~~w~~vedAG--------- 69 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG--HDVVLAEPNRDIMDDEHWKRVEDAG--------- 69 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcC--CcEEeecCCccccCHHHHHHHHhcC---------
Confidence 48999999997 3788999999999 99999987654 345555544
Q ss_pred CCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccch-hhhHHHHHH---HHhCC-C
Q 012596 182 KLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNT-LRMMSQIIP---QALRN-P 255 (460)
Q Consensus 182 ~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~-~~~l~e~l~---~~lg~-~ 255 (460)
+.+++|-.++++.+++.++.+|-. .+-.+..+|.+++++|++|.+..+ +.+-. -..+...++ +-.|. +
T Consensus 70 -----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT-~sp~vLy~~LE~~Lr~kR~dVGvss 143 (340)
T COG4007 70 -----VEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCT-VSPVVLYYSLEGELRTKREDVGVSS 143 (340)
T ss_pred -----cEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEeccccc-CchhHHHHHhhhhhcCchhhcCccc
Confidence 566666677889999999999965 788899999999999998877554 33321 011111221 11121 1
Q ss_pred CCCEEEEECcccHHHHhccCCeE-EEEccCCHHHHHHHHHHHhcCCceEEEcC
Q 012596 256 RQPFIALSGPSFALELMNKLPTA-MVVASKDRKLANAVQQLLASKHLRISTSS 307 (460)
Q Consensus 256 ~~~~~v~~gP~~a~e~~~g~~~~-i~i~~~d~~~~~~l~~lL~~~g~~v~~~~ 307 (460)
.+|+++-+.|.+..-+..|+.+. ..+ ...++.+++.++.++.|..++..+
T Consensus 144 mHPAgvPGtp~h~~yviagr~t~g~el--ATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 144 MHPAGVPGTPQHGHYVIAGRSTEGKEL--ATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cCCCCCCCCCCCceEEEeccCCCceee--ccHHHHHHHHHHHHhcCCceEecC
Confidence 23332222232221111111111 111 246889999999999998887643
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.9e-06 Score=85.67 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=69.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|+|+|+|.||..+|..|...| .+|++++|++++.+.+.+.|.. ....+++.+.++++|+||.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARITEMGLI------------PFPLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCCe------------eecHHHHHHHhccCCEEEEC
Confidence 479999999999999999999888 8999999998876665544321 01123566778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|...+. .+..+.+++++++|++..
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 9976322 234455678899999875
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-06 Score=85.01 Aligned_cols=105 Identities=20% Similarity=0.311 Sum_probs=68.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||||+|||+|.||..+|..++..|.. +|+++|++++.++.....-.... ........++.+++.+ .+++||+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~--~~~~~~~~i~~~~d~~-~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAA--PVEGFDTKITGTNDYE-DIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhh--hhcCCCcEEEeCCCHH-HHCCCCEEEEC
Confidence 58999999999999999999998843 99999998875543221100000 0001122455556775 47999999998
Q ss_pred cc--h--------------hcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 207 MP--V--------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 207 Vp--~--------------~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+. . ....++++.|.++. ++.++|..+|-+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 63 2 12455666676766 456677777643
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=78.18 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=68.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++|+|+|+|.||..++..|.+.| .++|++|+|++++.+.+.+.... .+ . . ....+..++++++|+||+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~-~~-----~--~-~~~~~~~~~~~~~Dvvi~ 87 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE-LG-----I--A-IAYLDLEELLAEADLIIN 87 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh-cc-----c--c-eeecchhhccccCCEEEe
Confidence 3579999999999999999999885 27899999999887776654211 00 0 0 122356666789999999
Q ss_pred ccchhcH--HHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFS--SSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~--~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+|.... ..+... ...+++++++++++.
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~~~~v~D~~~ 117 (155)
T cd01065 88 TTPVGMKPGDELPLP-PSLLKPGGVVYDVVY 117 (155)
T ss_pred CcCCCCCCCCCCCCC-HHHcCCCCEEEEcCc
Confidence 9997653 222111 123567889998864
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-06 Score=89.93 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=57.6
Q ss_pred CeEEEECcchHHHHHHH--HH----HhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 128 NKVVVLGGGSFGTAMAA--HV----ANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~--~L----a~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+||+|||+|.||.+++. .+ +.+| ++|.+||++++.++.+..... .+.+....+.++..++|..+++++||
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g--~eV~L~Did~e~l~~~~~~~~--~~~~~~~~~~~I~~ttD~~eal~~AD 76 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSG--STIALMDIDEERLETVEILAK--KIVEELGAPLKIEATTDRREALDGAD 76 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCC--CEEEEECCCHHHHHHHHHHHH--HHHHhcCCCeEEEEeCCHHHHhcCCC
Confidence 58999999999998766 34 3344 799999999987776554321 11122223446778899999999999
Q ss_pred EEEEccch
Q 012596 202 YCLHAMPV 209 (460)
Q Consensus 202 iVilaVp~ 209 (460)
+||++++.
T Consensus 77 ~Vi~ai~~ 84 (423)
T cd05297 77 FVINTIQV 84 (423)
T ss_pred EEEEeeEe
Confidence 99999985
|
linked to 3D####ucture |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.27 E-value=6e-06 Score=82.84 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=68.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH--hhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN--EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~--~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|.||+.+|..|+..|.. +|+++|+.++..+... ...... .......++.+.|.++ +++||+||+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~----~~~~~~~i~~t~d~~~-~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASP----VGGFDTKVTGTNNYAD-TANSDIVVI 75 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhh----ccCCCcEEEecCCHHH-hCCCCEEEE
Confidence 6999999999999999999998832 8999999765433111 001000 0111235667788877 689999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++... .+++++++|.++. ++.++|..+|-.
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~ 121 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL 121 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 98731 2344556666664 567888888743
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.5e-06 Score=72.44 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=72.1
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|||+ |.+|..+|..|...+...++.++|++++.++.....-....+ ..+.+..+..+..+.+++||+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASA----PLPSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHH----GSTEEEEEEESSGGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhh----hcccccccccccccccccccEEEEe
Confidence 79999999 999999999999998767899999997755433221000000 0111233333445568999999998
Q ss_pred cch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 207 MPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 207 Vp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
.-. . .++++.+.|.++- ++.+++.++|-++ .+...+.+..+
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd-----~~t~~~~~~s~ 133 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD-----VMTYVAQKYSG 133 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH-----HHHHHHHHHHT
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH-----HHHHHHHHhhC
Confidence 732 1 1333445566665 5667777776433 34455555433
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.3e-06 Score=71.62 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=64.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|+|+ |.||..++..+.+.. ++++. ++++.++.. .|.....+.+.. +.++.++++++++++.+|++|-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~-~~~lv~~v~~~~~~~-----~g~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP-GFELVGAVDRKPSAK-----VGKDVGELAGIG-PLGVPVTDDLEELLEEADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST-TEEEEEEEETTTSTT-----TTSBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-CcEEEEEEecCCccc-----ccchhhhhhCcC-CcccccchhHHHhcccCCEEEE
Confidence 69999999 999999999999842 26655 667765210 011111111111 3345677899999999999998
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccch
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
++-...+.+.++...+ .+..+|..++|+..+.
T Consensus 74 fT~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~ 105 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALK---HGVPLVIGTTGFSDEQ 105 (124)
T ss_dssp ES-HHHHHHHHHHHHH---HT-EEEEE-SSSHHHH
T ss_pred cCChHHhHHHHHHHHh---CCCCEEEECCCCCHHH
Confidence 8855555555555444 3778888888997654
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-06 Score=82.57 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=59.5
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||.| .||.+||..|.++| +.|++|++... +++++++.||+||
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~g--atVtv~~~~t~----------------------------~l~e~~~~ADIVI 207 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAH--CSVTVVHSRST----------------------------DAKALCRQADIVV 207 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEECCCCC----------------------------CHHHHHhcCCEEE
Confidence 36899999996 99999999999999 99999987531 5777889999999
Q ss_pred Eccchh-cHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~-~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++.. .+.... +++|+++|+++
T Consensus 208 savg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 208 AAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred EecCChhcccHhh------ccCCcEEEEec
Confidence 999864 343332 77899999986
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.5e-05 Score=65.80 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=62.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiVi 204 (460)
+||+|||+|.+|......+.+...+.+|. ++|++++..+.+.+.. ++...+|.+++++ +.|+|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-------------GIPVYTDLEELLADEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-------------TSEEESSHHHHHHHTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-------------cccchhHHHHHHHhhcCCEEE
Confidence 58999999999999999998874335655 8899998888776542 1236678888876 789999
Q ss_pred EccchhcHHHHHHHhhh
Q 012596 205 HAMPVQFSSSFLEGISD 221 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~ 221 (460)
+++|.....+.+....+
T Consensus 68 I~tp~~~h~~~~~~~l~ 84 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALE 84 (120)
T ss_dssp EESSGGGHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHH
Confidence 99998876666655544
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.2e-06 Score=82.23 Aligned_cols=93 Identities=20% Similarity=0.318 Sum_probs=65.8
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+|+|||+|.||..++..+.. .+ ..+|++|+|++++.+.+.+.-.. . ...+.+.+++++++++||+|+.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~-~-------g~~~~~~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRA-Q-------GFDAEVVTDLEAAVRQADIISC 195 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHh-c-------CCceEEeCCHHHHHhcCCEEEE
Confidence 4789999999999999986654 23 27899999999988887764110 0 0124566788888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++++. ..++. .+.+++++. |++.
T Consensus 196 aT~s~--~pvl~--~~~l~~g~~-i~~i 218 (314)
T PRK06141 196 ATLST--EPLVR--GEWLKPGTH-LDLV 218 (314)
T ss_pred eeCCC--CCEec--HHHcCCCCE-EEee
Confidence 99875 22222 145678884 4443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=79.79 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+|++|||+|.+|..++..|.+.| .+|++++|++++.+...+.|... ...+++.+.+.++|+||.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~~G~~~------------~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITEMGLSP------------FHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCee------------ecHHHHHHHhCCCCEEEEC
Confidence 579999999999999999999988 89999999987766665544211 1113566778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|...+ -++....++++.+||++..
T Consensus 218 ~p~~~i---~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 218 IPALVL---TKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CChhhh---hHHHHHcCCCCcEEEEEcc
Confidence 986432 2344556778999999864
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=79.45 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||+|.||..++..|...| ..+|++++|++++.+.+.+. |. .+...++..+++.++|+||
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g~------------~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELGG------------NAVPLDELLELLNEADVVI 243 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcCC------------eEEeHHHHHHHHhcCCEEE
Confidence 3589999999999999999998865 26899999999888777664 21 1111234567778999999
Q ss_pred EccchhcHHHHHHHhhhcC-CCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYV-DPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l-~~~~iIV~~~~ 234 (460)
.|+++.....++..+.... .++.++|+++.
T Consensus 244 ~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 244 SATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred ECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 9999876644444443222 24678888875
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00021 Score=70.14 Aligned_cols=96 Identities=21% Similarity=0.323 Sum_probs=77.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~-~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.+||+|||.|+=|.+=|.+|.++| .+|++--|.... .+...+.|. .+ -+.+|+++.+|+|+
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSG--lnViiGlr~g~~s~~kA~~dGf--------------~V-~~v~ea~k~ADvim 79 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSG--LNVIIGLRKGSSSWKKAKEDGF--------------KV-YTVEEAAKRADVVM 79 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcC--CcEEEEecCCchhHHHHHhcCC--------------Ee-ecHHHHhhcCCEEE
Confidence 5689999999999999999999999 888877775544 455555553 22 26889999999999
Q ss_pred EccchhcHHHHHH-HhhhcCCCCCeEEEeccCCccc
Q 012596 205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 205 laVp~~~~~~vl~-~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+-+|+..-.++++ +|.+.+++|.. +..+-|+...
T Consensus 80 ~L~PDe~q~~vy~~~I~p~Lk~G~a-L~FaHGfNih 114 (338)
T COG0059 80 ILLPDEQQKEVYEKEIAPNLKEGAA-LGFAHGFNIH 114 (338)
T ss_pred EeCchhhHHHHHHHHhhhhhcCCce-EEecccccee
Confidence 9999999888887 89999998874 5556677653
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=80.30 Aligned_cols=105 Identities=22% Similarity=0.320 Sum_probs=68.4
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~--~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
-+.+||+|||+|.||..+|..++..|. .+|+++|++++.++ .+...+.. . -...+..+..+.|.+ ++++||+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~-~---~~~~~~~I~~~~d~~-~l~~aDi 77 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSN-V---IAGSNSKVIGTNNYE-DIAGSDV 77 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhh-h---ccCCCeEEEECCCHH-HhCCCCE
Confidence 345899999999999999999998884 47999999887542 22111110 0 001122466667775 5799999
Q ss_pred EEEccch---------------------hcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 203 CLHAMPV---------------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 203 VilaVp~---------------------~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
||++.-. ....++++.|.++. ++..++..+|-.
T Consensus 78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 9996611 01344556666665 455777777643
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-05 Score=79.57 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=69.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH--hhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN--EKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~--~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+.+||+|||+|.||..+|..++..|. .+|.++|++++.++... ..+.. .+ ......+..+++.+ ++++||+|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~-~~---~~~~~~i~~~~d~~-~l~~ADiV 77 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFS-TL---VGSNINILGTNNYE-DIKDSDVV 77 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhc-cc---cCCCeEEEeCCCHH-HhCCCCEE
Confidence 45799999999999999999998875 58999999876543211 11110 00 11122455556776 57999999
Q ss_pred EEcc--chh--------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAM--PVQ--------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaV--p~~--------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|++. +.. ...++.+.+.++. ++.++|..+|-.
T Consensus 78 Vitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 78 VITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 9998 321 2445566666664 566777777743
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-06 Score=75.22 Aligned_cols=95 Identities=24% Similarity=0.286 Sum_probs=63.4
Q ss_pred HHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccccc--CCCceeeecccCCCccchHHHHhhC-----CCChHHH
Q 012596 328 IVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRLGS-----GEKLDDI 400 (460)
Q Consensus 328 ~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~--~~gd~~~t~~s~~srn~~~g~~l~~-----g~~~e~~ 400 (460)
.+..+|+.+|.+......++.|++.++++.|+|++++.++. +.+... ..+++ ....+.+ +++++
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~------~~~~~-~~~~~~~~~~~~~f~l~-- 72 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSW------MLKNR-APRMILNGDFDPGFSLD-- 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBH------HHHHH-HHHHHHTTTTCSSSBHH--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCch------HHHhh-hhhhhhcccCCccchhH--
Confidence 34456777888888999999999999999999999988752 222111 01111 1112322 22332
Q ss_pred HhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 401 LSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 401 ~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
...||+++++++|++.|+++|+.+.+.+++.
T Consensus 73 --------~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~ 103 (122)
T PF14833_consen 73 --------LARKDLRLALDLAKEAGVPLPLGSAARQLYQ 103 (122)
T ss_dssp --------HHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred --------hhccHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3569999999999999999999999988885
|
... |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.8e-06 Score=84.66 Aligned_cols=95 Identities=17% Similarity=0.297 Sum_probs=71.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~------~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~ 199 (460)
+.++|+|||.|++|.+-|.+|...| ++|++--|.. +..+...+.|. .+ .+.+|+++.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSG--vnVvvglr~~~id~~~~s~~kA~~dGF--------------~v-~~~~Ea~~~ 97 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSG--LDISYALRKEAIAEKRASWRKATENGF--------------KV-GTYEELIPQ 97 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCcccc--ceeEEeccccccccccchHHHHHhcCC--------------cc-CCHHHHHHh
Confidence 4589999999999999999999999 8888554442 23333333332 11 368889999
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
||+|++.+|.+.-..+.+++.+++++++.+. .+-|+..
T Consensus 98 ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~-fsHGFni 135 (487)
T PRK05225 98 ADLVINLTPDKQHSDVVRAVQPLMKQGAALG-YSHGFNI 135 (487)
T ss_pred CCEEEEcCChHHHHHHHHHHHhhCCCCCEEE-ecCCcee
Confidence 9999999998876667789999999887654 4557664
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.8e-05 Score=76.58 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=68.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||+|||+|.+|..+|..|+..|...++.++|++++.++.....-.....+. .. ..+..+.|+++ +++||+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~--~~-~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL--KN-PKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC--CC-CEEEECCCHHH-hCCCCEEEEC
Confidence 47999999999999999999988865689999998765543322110011110 11 24566678876 7999999996
Q ss_pred cch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 207 MPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 207 Vp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
.-. . .++++.+.|.++ .++.+++..+|-.
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 532 1 133344556665 4567788777743
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=69.52 Aligned_cols=96 Identities=24% Similarity=0.333 Sum_probs=65.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+..++.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.... .. ..+...++..+.+.++|+||.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~------~~--~~~~~~~~~~~~~~~~DivI~ 81 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG------VN--IEAIPLEDLEEALQEADIVIN 81 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG------CS--EEEEEGGGHCHHHHTESEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc------cc--cceeeHHHHHHHHhhCCeEEE
Confidence 35899999999999999999999983 3599999999999988775310 00 012233566667789999999
Q ss_pred ccchhcH---HHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFS---SSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~---~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|.... ++.+....+. -.+++++.
T Consensus 82 aT~~~~~~i~~~~~~~~~~~---~~~v~Dla 109 (135)
T PF01488_consen 82 ATPSGMPIITEEMLKKASKK---LRLVIDLA 109 (135)
T ss_dssp -SSTTSTSSTHHHHTTTCHH---CSEEEES-
T ss_pred ecCCCCcccCHHHHHHHHhh---hhceeccc
Confidence 9997532 2222221111 14888885
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-05 Score=79.18 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=58.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~-r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..++|+||| .|.||.+||.+|.++| +.|++|+ |++ +++++++.||+|
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g--~tVtv~~~rT~-----------------------------~l~e~~~~ADIV 205 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAAN--ATVTIAHSRTR-----------------------------DLPAVCRRADIL 205 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCC--CEEEEECCCCC-----------------------------CHHHHHhcCCEE
Confidence 468999999 9999999999999999 9999995 543 456777899999
Q ss_pred EEccchhc-HHHHHHHhhhcCCCCCeEEEec
Q 012596 204 LHAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|++... +... ++++|+++|++.
T Consensus 206 Isavg~~~~v~~~------~lk~GavVIDvG 230 (296)
T PRK14188 206 VAAVGRPEMVKGD------WIKPGATVIDVG 230 (296)
T ss_pred EEecCChhhcchh------eecCCCEEEEcC
Confidence 99999654 3332 277899999975
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.8e-05 Score=76.32 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=68.9
Q ss_pred EEEECc-chHHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 130 VVVLGG-GSFGTAMAAHVANKK--SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 130 I~IIGa-G~mG~~~A~~La~~G--~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|+|||+ |.||..++..|+..| ...+|+++|+++++++.....-..... .. ...++..++|+.+++++||+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~--~~-~~~~i~~~~d~~~~~~~aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVE--PL-ADIKVSITDDPYEAFKDADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhh--hc-cCcEEEECCchHHHhCCCCEEEEC
Confidence 689999 999999999999877 446899999988765544332111000 11 123567778877889999999995
Q ss_pred cch----------------hcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~----------------~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
.-. ....++.+.+.++. ++.+++..+|
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tN 120 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSN 120 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 521 12455556666655 5677777776
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.9e-05 Score=78.77 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=62.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||||.|||+|.+|+..|..|+++|. .+|++.+|+.++++++..... +.+. ..+ .+.-.+.+.+++++.|+||.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~---~~v--D~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEA---LQV--DAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcccccee---EEe--cccChHHHHHHHhcCCEEEE
Confidence 5899999999999999999999984 799999999999999876531 1110 000 00111245577889999999
Q ss_pred ccchhcHHHHHH
Q 012596 206 AMPVQFSSSFLE 217 (460)
Q Consensus 206 aVp~~~~~~vl~ 217 (460)
+.|.+....+++
T Consensus 75 ~~p~~~~~~i~k 86 (389)
T COG1748 75 AAPPFVDLTILK 86 (389)
T ss_pred eCCchhhHHHHH
Confidence 999876555543
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.5e-05 Score=77.27 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=67.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|.+|...+..|.......+|.+|+|++++++.+.+.-.. +...+.++++++++++++|+|++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~--------~g~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD--------YEVPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--------hCCcEEEeCCHHHHhccCCEEEEe
Confidence 478999999999999776665432237899999999988877653110 011255678999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|+.. .++. ...+++|+.|..+.
T Consensus 200 T~s~~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 200 TPSRK--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecC
Confidence 99743 1111 23457888876654
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.5e-05 Score=75.08 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=63.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-HHh-hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-INE-KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~-l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|.+|+.+|..|+..|.-.+|.++|+++++++. ..+ .+... +.+ +..+ .+.+.+ .+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~----~~~i-~~~d~~-~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP-FVK----PVRI-YAGDYA-DCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccc-ccC----CeEE-eeCCHH-HhCCCCEEEE
Confidence 6899999999999999999998844589999999875542 111 11111 111 1122 245664 4799999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+++.. .++++.+.|.++- ++.+++..+|
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tN 117 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTN 117 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 98742 1334445566654 3455555555
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.5e-05 Score=74.60 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=65.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVila 206 (460)
+||+|||+|.+|.++|..|+..|..++|+++|+++++++.+...-....++ .+..... ..+.++ +++||+||++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~----~~~~~~i~~~~~~~-l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF----LPSPVKIKAGDYSD-CKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc----cCCCeEEEcCCHHH-hCCCCEEEEc
Confidence 489999999999999999999885458999999988766554321000000 0111222 245544 7899999998
Q ss_pred cchh----------------cHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 207 Vp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+... .+.++.+.|.++. ++.+++..+|-
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNP 119 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCh
Confidence 8641 1334445565554 46677777763
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.4e-05 Score=72.62 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=66.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCC---HHhh-cCCCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTD---AKTA-LLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~---~~ea-~~~aDi 202 (460)
|+|.|||+|.+|..+|..|.+.| |+|++++++++.+++......... .+.. .++ +.++ +.++|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~~~~~~---------~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLADELDTH---------VVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhhhcceE---------EEEecCCCHHHHHhcCCCcCCE
Confidence 78999999999999999999999 999999999998887444111100 0111 112 2333 568999
Q ss_pred EEEccchhcHHHHHHHhhhc-CCCCCeEEEecc
Q 012596 203 CLHAMPVQFSSSFLEGISDY-VDPGLPFISLSK 234 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~-l~~~~iIV~~~~ 234 (460)
++.++..+.+..++-.+... +....++.-..+
T Consensus 70 vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 70 VVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred EEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999998888877766533 444445554443
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.8e-05 Score=72.19 Aligned_cols=171 Identities=13% Similarity=0.210 Sum_probs=101.2
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCccCC--CC--CCCCceE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFP--EQ--KLPENVI 188 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~-----------~g~~~~~~~--~~--~l~~~i~ 188 (460)
|..+..|+|||+|.||+.+|...+.+| ++|.++|++++.+.+..+ .+....... ++ ..-..++
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg--~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSG--LNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcC--CceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 445678999999999999999999999 999999999886543322 111000000 00 0012355
Q ss_pred EeCCHHhhcCCCcEEEEccchh-c-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH--HhCCCCCCEEEEEC
Q 012596 189 ATTDAKTALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ--ALRNPRQPFIALSG 264 (460)
Q Consensus 189 a~~~~~ea~~~aDiVilaVp~~-~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~--~lg~~~~~~~v~~g 264 (460)
.+++..++++++|+||-++-.. . -..++++|....++++++.+-+..+... .+...+++ .+++ -.+..
T Consensus 86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt---~ia~~~~~~srf~G-----lHFfN 157 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLT---DIASATQRPSRFAG-----LHFFN 157 (298)
T ss_pred HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHH---HHHhhccChhhhce-----eeccC
Confidence 6678888899999999887642 3 4567888888888888776654433322 11111111 1211 12233
Q ss_pred cccHH---HHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 265 PSFAL---ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 265 P~~a~---e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
|.-.. |+..+. ...++.+..+..+=...|-......|..|
T Consensus 158 PvPvMKLvEVir~~-------~TS~eTf~~l~~f~k~~gKttVackDtpG 200 (298)
T KOG2304|consen 158 PVPVMKLVEVIRTD-------DTSDETFNALVDFGKAVGKTTVACKDTPG 200 (298)
T ss_pred CchhHHHhhhhcCC-------CCCHHHHHHHHHHHHHhCCCceeecCCCc
Confidence 33222 221111 12456777777776666766666666544
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.7e-05 Score=79.91 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=99.7
Q ss_pred cCCCCCCCCcEEEEeccCCCCCCcC---------CCCCceeecCCCCCCCCCccccccccccccCCcccchhhhhhhhhc
Q 012596 38 LPHFPTKNPTLVFTLNSSSGSATTN---------NNNDNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKL 108 (460)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 108 (460)
+-..|+.++.+.--+.--+-..||. ..+=+.-+.|+|+ +.-.+.+|...... .+.|+..
T Consensus 177 ~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d-~~tk~~aD~~~G~~-----------~s~~d~~ 244 (476)
T PTZ00075 177 LTKNPDKWTNLVKKIVGVSEETTTGVHRLYKMLKKGELLFPAINVND-SVTKSKFDNIYGCR-----------HSLIDGI 244 (476)
T ss_pred hhcCchhhhhhhhccEeeeecchHHHHHHHHHHHCCCCCceEEEeCC-cchHHHHHHHHHHH-----------HHHHHHH
Confidence 3345666766665554333333332 2234678889998 66666666533321 1122222
Q ss_pred ccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceE
Q 012596 109 VRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188 (460)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~ 188 (460)
+| ... ..-..++|+|||.|.+|..+|.+|...| .+|+++++++.+.......|. .
T Consensus 245 ~R------~~~---~~LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~~G~--------------~ 299 (476)
T PTZ00075 245 FR------ATD---VMIAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAMEGY--------------Q 299 (476)
T ss_pred HH------hcC---CCcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHhcCc--------------e
Confidence 21 111 1224689999999999999999999887 899999998765533333332 1
Q ss_pred EeCCHHhhcCCCcEEEEccchhcHHHHHH-HhhhcCCCCCeEEEeccC
Q 012596 189 ATTDAKTALLGADYCLHAMPVQFSSSFLE-GISDYVDPGLPFISLSKG 235 (460)
Q Consensus 189 a~~~~~ea~~~aDiVilaVp~~~~~~vl~-~i~~~l~~~~iIV~~~~G 235 (460)
. .+.+++++.+|+|++++.. ..++. +....++++.+++++..+
T Consensus 300 ~-~~leell~~ADIVI~atGt---~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 300 V-VTLEDVVETADIFVTATGN---KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred e-ccHHHHHhcCCEEEECCCc---ccccCHHHHhccCCCcEEEEcCCC
Confidence 1 2577888999999999743 33442 455668899999998765
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=6e-05 Score=75.43 Aligned_cols=99 Identities=20% Similarity=0.292 Sum_probs=63.8
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|+|||+|.||..+|..|+..|.. +|+++|++++..+...- .... ........+..+.|.+ ++++||+||+++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~----~~~~~~~~I~~t~d~~-~l~dADiVIit~ 74 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAA----PILGSDTKVTGTNDYE-DIAGSDVVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhh----hhcCCCeEEEEcCCHH-HhCCCCEEEEec
Confidence 68999999999999999988833 99999998765432111 1100 0001122455556765 479999999977
Q ss_pred ch----------------hcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 208 PV----------------QFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 208 p~----------------~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
.. ....+++++|.++. ++.++|..+|-
T Consensus 75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP 117 (300)
T cd01339 75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNP 117 (300)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 31 12445666677766 45566666663
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.1e-05 Score=72.53 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=64.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+|||+|+|+ |.||..++..+.+.. +.+++ +++++++..... . ..++...+|++++++++|+|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~-~~elvav~d~~~~~~~~~-~-------------~~~i~~~~dl~~ll~~~DvVi 65 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAE-DLELVAAVDRPGSPLVGQ-G-------------ALGVAITDDLEAVLADADVLI 65 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCcccccc-C-------------CCCccccCCHHHhccCCCEEE
Confidence 479999998 999999998888642 26665 577776533221 0 012334568888888899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccch
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
.+++.....+++....+ .|..+|.-+.|+..+.
T Consensus 66 d~t~p~~~~~~~~~al~---~G~~vvigttG~s~~~ 98 (257)
T PRK00048 66 DFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQ 98 (257)
T ss_pred ECCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence 88877666665544433 4555555567777654
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=68.28 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=63.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhc-CCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTAL-LGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiV 203 (460)
+.|+|+|+|+|+||..+|..|.+.| ++|+++|++++.++.+.+. +. ...+ .++.. .+||++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~~~~~~~~~~~~g~--------------~~v~-~~~l~~~~~Dv~ 89 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADINEEAVARAAELFGA--------------TVVA-PEEIYSVDADVF 89 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHcCC--------------EEEc-chhhccccCCEE
Confidence 4589999999999999999999999 9999999999888777654 21 1122 23333 379999
Q ss_pred EEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+-|..... ..+.++.+ + ..+|+.-.|+-.
T Consensus 90 vp~A~~~~I~~~~~~~l----~-~~~v~~~AN~~~ 119 (200)
T cd01075 90 APCALGGVINDDTIPQL----K-AKAIAGAANNQL 119 (200)
T ss_pred EecccccccCHHHHHHc----C-CCEEEECCcCcc
Confidence 96655443 34444444 2 457888777644
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.5e-05 Score=77.65 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=52.4
Q ss_pred CCeEEEECcchHHHHHHH--HHH-hcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAA--HVA-NKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~--~La-~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|+||+|||+|.||.+.+. .++ ..+. +.+|+++|+++++++.....-. ........+..+..++|..+++++||+
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~--~~~~~~~~~~~i~~ttD~~eal~dADf 78 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR--KLAESLGASAKITATTDRREALQGADY 78 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhcCCCeEEEEECCHHHHhCCCCE
Confidence 479999999999977665 554 1122 2689999999987653322100 000011112356778898888999999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||+++-
T Consensus 79 Vv~ti~ 84 (431)
T PRK15076 79 VINAIQ 84 (431)
T ss_pred EeEeee
Confidence 998764
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=78.28 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=69.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+|+|||+|.||..++..|...|. .+|++++|+.++++.+.+.... ... .+...++..+++.++|+||.|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~g------~~i--~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFPD------VEI--IYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhCC------Cce--EeecHhhHHHHHhcCCEEEEc
Confidence 5799999999999999999998882 3799999999998888764211 000 011224666778999999999
Q ss_pred cchhc---HHHHHHHhhhcC---CCCCeEEEecc
Q 012596 207 MPVQF---SSSFLEGISDYV---DPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~---~~~vl~~i~~~l---~~~~iIV~~~~ 234 (460)
+++.. ..+.++.+.+.- ....++|+++-
T Consensus 337 T~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 337 TSSETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred cCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 98643 455666653321 12247888763
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=74.26 Aligned_cols=94 Identities=11% Similarity=0.183 Sum_probs=67.5
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+++|||+|.+|...+..+.. .+. .+|.+|+|++++++++.+.-.. . ++..+...++.+++++++|+|+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~-~~v~v~~r~~~~a~~~~~~~~~-~------~~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDI-ERVRVYSRTFEKAYAFAQEIQS-K------FNTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCc-cEEEEECCCHHHHHHHHHHHHH-h------cCCcEEEeCCHHHHHhcCCEEEE
Confidence 4789999999999998887764 332 5899999999988877653100 0 01124456788888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|+.. .++. ..+++|+.|+.+.
T Consensus 199 aT~s~~--p~i~---~~l~~G~hV~~iG 221 (325)
T PRK08618 199 VTNAKT--PVFS---EKLKKGVHINAVG 221 (325)
T ss_pred ccCCCC--cchH---HhcCCCcEEEecC
Confidence 999763 2332 4567888877653
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=73.92 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=68.7
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
...++|+|+|+|.+|..+|..+...| .+|+++++++.+.......|. .+ .+.+++++.+|+||
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~~G~--------------~v-~~leeal~~aDVVI 255 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAMDGF--------------RV-MTMEEAAKIGDIFI 255 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHhcCC--------------Ee-CCHHHHHhcCCEEE
Confidence 34689999999999999999999888 899999999876544444332 11 14567788999999
Q ss_pred EccchhcHHHHHH-HhhhcCCCCCeEEEeccC
Q 012596 205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKG 235 (460)
Q Consensus 205 laVp~~~~~~vl~-~i~~~l~~~~iIV~~~~G 235 (460)
.++.. ..++. +....++++.++++...+
T Consensus 256 taTG~---~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 256 TATGN---KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ECCCC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence 98764 33443 356678889999988764
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=62.99 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=63.2
Q ss_pred eEEEECc-chHHHHHHHHHHhc-CCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCcEEE
Q 012596 129 KVVVLGG-GSFGTAMAAHVANK-KSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL 204 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~-~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVi 204 (460)
||+|+|+ |.+|..++..|.+. + +++..+ +++.+..+.+...+..... ... . ... .+.+ ..++|+||
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~--~~l~av~~~~~~~~~~~~~~~~~~~~---~~~-~--~~~~~~~~--~~~~DvV~ 70 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD--FEVVALAASARSAGKRVSEAGPHLKG---EVV-L--ELEPEDFE--ELAVDIVF 70 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC--ceEEEEEechhhcCcCHHHHCccccc---ccc-c--ccccCChh--hcCCCEEE
Confidence 6899995 99999999999985 4 677655 6554333333333211100 000 0 011 1222 24899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+|.....+++..+.+.+.+|+++|+++.-+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 71 LALPHGVSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred EcCCcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence 99999988887766666678899999998643
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00022 Score=71.86 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=63.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVil 205 (460)
.+||+|||+|.+|..+|..|+..|.-.++.++|++.++++.....-..... +..++.. +++.+ .+++||+||+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-----~~~~~~i~~~~~~-~~~~adivIi 79 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-----FTSPTKIYAGDYS-DCKDADLVVI 79 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-----ccCCeEEEeCCHH-HhCCCCEEEE
Confidence 579999999999999999999888434899999987765433321100000 1012233 34554 4799999999
Q ss_pred ccch--h--------------cHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPV--Q--------------FSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~--~--------------~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+.-. . .+.++++.+.++- ++..++..+|
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsN 123 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASN 123 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 6532 1 1233344444443 4567777766
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00018 Score=65.10 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=60.6
Q ss_pred hhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
.+|...+++.|+|.|.+|..+|..|...| ..|++++.+|-++-+....|. ++. +.+++++.+|
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~alqA~~dGf--------------~v~-~~~~a~~~ad 80 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIRALQAAMDGF--------------EVM-TLEEALRDAD 80 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHHHTT---------------EEE--HHHHTTT-S
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHHHHHhhhcCc--------------Eec-CHHHHHhhCC
Confidence 46656789999999999999999999988 899999999976544444442 332 5788999999
Q ss_pred EEEEccchhcH--HHHHHHhhhcCCCCCeEEEec
Q 012596 202 YCLHAMPVQFS--SSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 202 iVilaVp~~~~--~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++|.++-...+ .+-+ +.+++++++.++.
T Consensus 81 i~vtaTG~~~vi~~e~~----~~mkdgail~n~G 110 (162)
T PF00670_consen 81 IFVTATGNKDVITGEHF----RQMKDGAILANAG 110 (162)
T ss_dssp EEEE-SSSSSSB-HHHH----HHS-TTEEEEESS
T ss_pred EEEECCCCccccCHHHH----HHhcCCeEEeccC
Confidence 99999876542 3333 3467788877764
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00045 Score=65.13 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=69.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|+|++||+|++|..+...+-+.-.+. -|.+|||+.+++..+.+.-. ....+++++.+++.|+++-|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~-------------~~~~s~ide~~~~~DlvVEa 67 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG-------------RRCVSDIDELIAEVDLVVEA 67 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC-------------CCccccHHHHhhccceeeee
Confidence 68999999999999998887541123 47799999998887765311 01225788888999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
-..+++++...++.+ .|.-+|.++-|-..+
T Consensus 68 AS~~Av~e~~~~~L~---~g~d~iV~SVGALad 97 (255)
T COG1712 68 ASPEAVREYVPKILK---AGIDVIVMSVGALAD 97 (255)
T ss_pred CCHHHHHHHhHHHHh---cCCCEEEEechhccC
Confidence 999999887777654 344444455554443
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0002 Score=71.74 Aligned_cols=100 Identities=13% Similarity=0.176 Sum_probs=65.5
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~ 209 (460)
|+|||+|.+|+.+|..|+..|.-.+++++|+++++++.....-..... ... ...+..+++.+ .+++||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~--~~~-~~~i~~~~~~~-~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASA--FLA-TGTIVRGGDYA-DAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcc--ccC-CCeEEECCCHH-HhCCCCEEEEcCCC
Confidence 689999999999999999887556899999988766555432100000 001 12344445554 57999999998753
Q ss_pred h----------------cHHHHHHHhhhcCCCCCeEEEecc
Q 012596 210 Q----------------FSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 210 ~----------------~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
. .+.++.+.|.++. ++..++..+|
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sN 116 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSN 116 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 1 1344445566655 5667777776
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00021 Score=74.58 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=67.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|+|+|.+|..+|..|...| .+|+++++++.+.......|. .+ .+.+++++.+|+||.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~G~--------------~v-~~l~eal~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMDGF--------------RV-MTMEEAAELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhcCC--------------Ee-cCHHHHHhCCCEEEE
Confidence 5689999999999999999999888 899999999876544443332 11 246777889999999
Q ss_pred ccchhcHHHHHH-HhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLE-GISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~-~i~~~l~~~~iIV~~~~ 234 (460)
++.. ..++. .....++++.++++...
T Consensus 274 aTG~---~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 274 ATGN---KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCCC---HHHHHHHHHhcCCCCCEEEEcCC
Confidence 8754 33443 45667888998888753
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=72.74 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=66.8
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCHH--HHHHHHh--hcCCCccCCCCCCCCceEEeCCH
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPA--VCQSINE--KHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~-----~V~v~~r~~~--~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
|+.++||+|||+ |.+|..+|..|...+.-. ++.++|.++. +++.... .+... .+..++.++.+.
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~------~~~~~~~i~~~~ 74 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF------PLLAGVVITDDP 74 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh------hhcCCcEEecCh
Confidence 456789999998 999999999998766423 7999998542 2221110 01100 011123444445
Q ss_pred HhhcCCCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 194 KTALLGADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
.+.+++||+||++--. . .++++.+.|.++.+++.++|..+|-++
T Consensus 75 y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 75 NVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 4668999999986531 1 134455566666656778888887443
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00043 Score=68.14 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=74.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHH-HH-HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPA-VC-QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~-v~~r~~~-~~-~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
||||+|+| +|.||..++..+.+.. +.++. +++|... .. +.+.+.. +. .+.++.+++|++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~~~~~~~-------~~-~~~gv~~~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGTDAGELA-------GI-GKVGVPVTDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCCCHHHhc-------Cc-CcCCceeeCCHHHhcCCCCE
Confidence 37999999 6999999999998642 26665 5675422 11 1111100 00 01135566788886557899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
||.+++.....+.+..... .+..+|..+.|+..+..+.+.+..++ ....++.+|++.-
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l~~aA~~------~g~~v~~a~NfSl 129 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQELADLAEK------AGIAAVIAPNFSI 129 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHhc------CCccEEEECcccH
Confidence 9999988777666554433 46666766668876543333333222 1234666666554
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00028 Score=70.78 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=67.0
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|+|||+|.+|...+..+.. .+. .+|.+|+|++++++++.++-.. . ...+. .++.+++++++|+|+.
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~------~--~~~~~-~~~~~~av~~aDiVit 194 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARA------L--GPTAE-PLDGEAIPEAVDLVVT 194 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHh------c--CCeeE-ECCHHHHhhcCCEEEE
Confidence 4789999999999999999975 342 5799999999988887764210 0 01122 4678888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|+.. .++. ..+++|+.|..+.
T Consensus 195 aT~s~~--Pl~~---~~~~~g~hi~~iG 217 (304)
T PRK07340 195 ATTSRT--PVYP---EAARAGRLVVAVG 217 (304)
T ss_pred ccCCCC--ceeC---ccCCCCCEEEecC
Confidence 999764 2222 2357888777664
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00016 Score=75.87 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=66.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|||+|.||..++..|...|. .+|++++|++++++.+.+.... .+....+..+++.++|+||.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g~-----------~~~~~~~~~~~l~~aDvVI~ 248 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFGG-----------EAIPLDELPEALAEADIVIS 248 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcCC-----------cEeeHHHHHHHhccCCEEEE
Confidence 35799999999999999999998882 3799999999888777654210 11112355667789999999
Q ss_pred ccchhc---HHHHHHHhh-hcCCCCCeEEEecc
Q 012596 206 AMPVQF---SSSFLEGIS-DYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~---~~~vl~~i~-~~l~~~~iIV~~~~ 234 (460)
|+++.. ..+.++... ..-..+.+++++..
T Consensus 249 aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 249 STGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 998643 233333321 11123467888864
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00023 Score=74.52 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=67.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhc-------CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANK-------KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~-------G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
+..||+|||+ |.+|..+|..|+.. +.-.++.++|++.++++...-+-.... ..+...+.+..+..+.+
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa----~~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSL----YPLLREVSIGIDPYEVF 174 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhh----hhhcCceEEecCCHHHh
Confidence 4579999999 99999999999987 533478999998876553322110000 01112355444444568
Q ss_pred CCCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 198 LGADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 198 ~~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++||+||++--. . .++++.+.|.++..++.++|.++|-+
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 999999997532 1 13344445555445677888887744
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00038 Score=68.45 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=59.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||||+|||+|+||..++..|.+.. +.++. +++++.. .++..+.- ...+.+++|.+++..+.|+|+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~-~~~l~~v~~~~~~-~~~~~~~~-----------~~~~~~~~d~~~l~~~~DvVve 67 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDP-DLRVDWVIVPEHS-IDAVRRAL-----------GEAVRVVSSVDALPQRPDLVVE 67 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCC-CceEEEEEEcCCC-HHHHhhhh-----------ccCCeeeCCHHHhccCCCEEEE
Confidence 479999999999999999998753 25554 3444322 12111110 0023456778776456899999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
|++.....+...... +.|.-++..+.|
T Consensus 68 ~t~~~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 68 CAGHAALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred CCCHHHHHHHHHHHH---HcCCCEEEeChH
Confidence 999877666555443 346666666655
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00028 Score=70.75 Aligned_cols=96 Identities=11% Similarity=0.164 Sum_probs=68.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..|..-+..+..--.-.+|.+|+|++++++++.++-.. .+...+.+.+++++++++||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~-------~~~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK-------EFGVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH-------hcCCcEEEeCCHHHHHhcCCEEEEe
Confidence 478999999999999988887642225899999999998877654210 0112356678999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++.. .+++ .+.+++|+.|..+.
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiG 212 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAG 212 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecC
Confidence 99753 1111 23456787665543
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00037 Score=73.07 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=65.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+|+|||+|.||..++..|...|. .+|++++|+.++++.+.+.... ......+..+++.++|+||.|
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~-----------~~i~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG-----------EAVKFEDLEEYLAEADIVISS 247 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC-----------eEeeHHHHHHHHhhCCEEEEC
Confidence 4799999999999999999998873 5899999999887766653110 011123566778899999999
Q ss_pred cchhc---HHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQF---SSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~---~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+++.. ..+.++.....-+...+++++..
T Consensus 248 T~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 248 TGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred CCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 98643 23333332211112347888763
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00034 Score=70.36 Aligned_cols=107 Identities=14% Similarity=0.308 Sum_probs=63.7
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCcc-CCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~-~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|+|+ |.+|..++..|+..|...+|+++|+++ ..+.+......... +........+..+++.++ +++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~-~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK-SLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc-cccccccccchhhhchhccCCCcEEEECCCHHH-hCCCCEEEE
Confidence 79999998 999999999999988434699999954 11211111000000 000001113455556554 899999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++... .+.++.+.|.++. ++.++|..+|-++
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd 125 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 88521 1334445566655 4556666666444
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00042 Score=69.88 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=69.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..|..-+..+...-.-.+|.+|+|++++++++.+.-.. . ...+.+.++.++++++||+|+.|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~------~--~~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA------L--GFAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh------c--CCcEEEECCHHHHhcCCCEEEEe
Confidence 478999999999999988887643236899999999998877653210 0 12356678999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++.. .+++ .+.+++|+.|..+.
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iG 222 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVG 222 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecC
Confidence 99754 2221 23567888877664
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00019 Score=61.83 Aligned_cols=97 Identities=18% Similarity=0.304 Sum_probs=61.7
Q ss_pred eEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEEEE
Q 012596 129 KVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (460)
Q Consensus 129 kI~IIG-aG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil 205 (460)
||+||| .|.+|..+...|.+.- ..++. ++.++.+.-..+........ + ...+.+.+ +.++ +.++|+||+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp-~~e~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~~~~~~~~~~-~~~~Dvvf~ 72 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP-DFELVALVSSSRSAGKPLSEVFPHPK---G---FEDLSVEDADPEE-LSDVDVVFL 72 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS-TEEEEEEEESTTTTTSBHHHTTGGGT---T---TEEEBEEETSGHH-HTTESEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCC-CccEEEeeeeccccCCeeehhccccc---c---ccceeEeecchhH-hhcCCEEEe
Confidence 799999 9999999999999853 35654 55665522222222110000 0 01222333 4444 589999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|+|.....++...+. ++|..||+++.-+
T Consensus 73 a~~~~~~~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 73 ALPHGASKELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp -SCHHHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred cCchhHHHHHHHHHh---hCCcEEEeCCHHH
Confidence 999988887776663 4688999988644
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00015 Score=71.55 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=58.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||. |.||.+||..|.++| +.|++|... +.++++.++.||+||
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~g--atVtv~~s~----------------------------t~~l~~~~~~ADIVI 206 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKN--ATVTLTHSR----------------------------TRNLAEVARKADILV 206 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCC--CEEEEECCC----------------------------CCCHHHHHhhCCEEE
Confidence 3689999999 999999999999999 999999321 125777789999999
Q ss_pred Eccchhc-HHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~-~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++... +... ++++|+++|++.
T Consensus 207 ~avg~~~~v~~~------~ik~GavVIDvg 230 (284)
T PRK14179 207 VAIGRGHFVTKE------FVKEGAVVIDVG 230 (284)
T ss_pred EecCccccCCHH------HccCCcEEEEec
Confidence 9998654 3332 378899999985
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00028 Score=71.91 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=68.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..+..-...+..--.-.+|++|+|++++.+++.+.-.. ....+.++++++++++++|+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG--------PGLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh--------cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 478999999999988877665432226899999999988877654211 011356678999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++.....+++. +.+++|+.|..+.
T Consensus 201 T~S~~~~Pvl~~--~~lkpG~hV~aIG 225 (346)
T PRK07589 201 TADKTNATILTD--DMVEPGMHINAVG 225 (346)
T ss_pred cCCCCCCceecH--HHcCCCcEEEecC
Confidence 986542222221 4567888766553
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=73.05 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=67.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|+|+|.+|..+|..+...| .+|+++++++.+.......|. .. .+.+++++.+|+||.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~G~--------------~v-v~leEal~~ADVVI~ 315 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALMEGY--------------QV-LTLEDVVSEADIFVT 315 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhcCC--------------ee-ccHHHHHhhCCEEEE
Confidence 4689999999999999999999777 899999999865444433332 11 146778889999998
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
++....+ +..+....++++.+++++..
T Consensus 316 tTGt~~v--I~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 316 TTGNKDI--IMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCCCccc--hHHHHHhcCCCCCEEEEcCC
Confidence 7665432 11344566888999999876
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00038 Score=70.26 Aligned_cols=96 Identities=19% Similarity=0.329 Sum_probs=71.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
...++|||+|..+..-...+..--.-.+|.+|+|+++..+++.+.-.. .+...+.++++.++++++||+|+.|
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~~~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGGEAVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcCccceeccCHHHHhhcCCEEEEe
Confidence 468999999999999999887643225799999999988877653110 1112356778999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|+.. .++ ..+.+++|+.|..+.
T Consensus 203 T~s~~--Pil--~~~~l~~G~hI~aiG 225 (330)
T COG2423 203 TPSTE--PVL--KAEWLKPGTHINAIG 225 (330)
T ss_pred cCCCC--Cee--cHhhcCCCcEEEecC
Confidence 99876 222 135567888877665
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00032 Score=71.19 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=58.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|+|||+|.+|.+.+..|.....-.+|++|+|++++++++.+.-.. . +...+...+++++++.++|+|+.|
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-~------~g~~v~~~~d~~~al~~aDiVi~a 204 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-E------LGIPVTVARDVHEAVAGADIIVTT 204 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-c------cCceEEEeCCHHHHHccCCEEEEe
Confidence 478999999999999888887532126899999999998888764211 0 011245567888999999999999
Q ss_pred cchh
Q 012596 207 MPVQ 210 (460)
Q Consensus 207 Vp~~ 210 (460)
+|+.
T Consensus 205 T~s~ 208 (330)
T PRK08291 205 TPSE 208 (330)
T ss_pred eCCC
Confidence 9975
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00054 Score=69.97 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=65.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
+||+|||+|.+|+.+|..|+..+.-.++.++|.++++++.....-.....+.. ...+....+.++ +++||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~---~~~i~~~~dy~~-~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLP---RTKILASTDYAV-TAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCC---CCEEEeCCCHHH-hCCCCEEEECC
Confidence 69999999999999999999887545899999988655433221000000000 123443356666 79999999974
Q ss_pred ch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 208 PV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 208 p~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
-. . .+.++.+.|.++. ++.++|..+|-+
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPv 157 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPV 157 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCch
Confidence 31 1 1233444555543 566777777643
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=73.68 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=66.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+|.|||+|.+|...+..+...| .+|+++||++++++.+........+. ...-..++.+.+.++|+||.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~~v~~-------~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGGRIHT-------RYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCceeEe-------ccCCHHHHHHHHccCCEEEEc
Confidence 468999999999999999999988 78999999998877776542110000 000012345667899999999
Q ss_pred cch--hcHHHH-HHHhhhcCCCCCeEEEec
Q 012596 207 MPV--QFSSSF-LEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~--~~~~~v-l~~i~~~l~~~~iIV~~~ 233 (460)
++. .....+ -++....++++.+||+++
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 742 111121 234445567889998876
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00037 Score=73.47 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=59.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil 205 (460)
|+|.|+|+|.+|..++..|.+.| ++|+++++++++++.+.+ .+....+ .+. .-...+.++ +.++|.||+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~~~~~~~~~~~~~~~~-gd~------~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEERLRRLQDRLDVRTVV-GNG------SSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhhcCEEEEE-eCC------CCHHHHHHcCCCcCCEEEE
Confidence 68999999999999999999988 899999999998888765 2221110 110 000123333 678999999
Q ss_pred ccchhcHHHHHHHhhh
Q 012596 206 AMPVQFSSSFLEGISD 221 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~ 221 (460)
+++.......+....+
T Consensus 72 ~~~~~~~n~~~~~~~r 87 (453)
T PRK09496 72 VTDSDETNMVACQIAK 87 (453)
T ss_pred ecCChHHHHHHHHHHH
Confidence 9998776554444433
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00032 Score=71.11 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+|+|||+|.+|...+..|.....-..|.+|+|++++.+++.+.-.. .++..+...++.+++++ +|+|++|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSS-------VVGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHh-------hcCceEEEeCCHHHHhh-CCEEEEe
Confidence 478999999999999999998543125788999999988877654110 01123455678888886 9999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|+.. .+++ .+.+++|+.|..+.
T Consensus 201 Tps~~--P~~~--~~~l~~g~hV~~iG 223 (326)
T PRK06046 201 TPSRK--PVVK--AEWIKEGTHINAIG 223 (326)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecC
Confidence 99753 1111 23457788766654
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0002 Score=72.14 Aligned_cols=98 Identities=19% Similarity=0.321 Sum_probs=61.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..|..-+..+...-.-.+|.+|+|++++++++.+.-.. +...+..++|+++++++||+|+.|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~--------~~~~v~~~~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD--------LGVPVVAVDSAEEAVRGADIIVTA 199 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC--------CCTCEEEESSHHHHHTTSSEEEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc--------ccccceeccchhhhcccCCEEEEc
Confidence 368999999999999988887642236899999999988887764211 112467788999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+++.....+++ ...+++|+.|..+..
T Consensus 200 T~s~~~~P~~~--~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 200 TPSTTPAPVFD--AEWLKPGTHINAIGS 225 (313)
T ss_dssp ---SSEEESB---GGGS-TT-EEEE-S-
T ss_pred cCCCCCCcccc--HHHcCCCcEEEEecC
Confidence 99765211121 246778888777653
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0017 Score=66.38 Aligned_cols=101 Identities=19% Similarity=0.304 Sum_probs=63.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH-hhcCCCcEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK-TALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~-ea~~~aDiVi 204 (460)
|+||+|||+ |.+|..++..|.+.. +++++.+.++.+..+.+.+..... .+. ....+. +.+ ....++|+||
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p-~~elv~v~~~~~~g~~l~~~~~~~---~~~---~~~~~~-~~~~~~~~~vD~Vf 73 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP-EVEIVAVTSRSSAGKPLSDVHPHL---RGL---VDLVLE-PLDPEILAGADVVF 73 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC-CceEEEEECccccCcchHHhCccc---ccc---cCceee-cCCHHHhcCCCEEE
Confidence 589999997 999999999999763 367765544333222232221100 000 001111 121 2346899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
+|+|.....++...+.+ .|..||+++..+-.
T Consensus 74 ~alP~~~~~~~v~~a~~---aG~~VID~S~~fR~ 104 (343)
T PRK00436 74 LALPHGVSMDLAPQLLE---AGVKVIDLSADFRL 104 (343)
T ss_pred ECCCcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence 99999887777666544 57899999876544
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0012 Score=64.42 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~-~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiV 203 (460)
.+||+|||+|+||..++..|.+.+. +.++. +++|++++.+++... +.+.+++++. ...+|+|
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~---------------~~~~~~l~~ll~~~~DlV 66 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR---------------VALLDGLPGLLAWRPDLV 66 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc---------------CcccCCHHHHhhcCCCEE
Confidence 4799999999999999999976431 24444 667777666665432 2345678885 5789999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+-|-....+.+....+.. .|.-++.++-|-..+
T Consensus 67 VE~A~~~av~e~~~~iL~---~g~dlvv~SvGALaD 99 (267)
T PRK13301 67 VEAAGQQAIAEHAEGCLT---AGLDMIICSAGALAD 99 (267)
T ss_pred EECCCHHHHHHHHHHHHh---cCCCEEEEChhHhcC
Confidence 999999988888777654 355555566554443
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00074 Score=70.33 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=68.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
...+|+|+|+|.+|..++..+...| .+|+++++++.+.+.....|. ... +.+++++.+|+||.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~G~--------------~~~-~~~e~v~~aDVVI~ 263 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAMEGY--------------EVM-TMEEAVKEGDIFVT 263 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhcCC--------------EEc-cHHHHHcCCCEEEE
Confidence 4679999999999999999999888 799999999887776665553 111 34567789999999
Q ss_pred ccchhcHHHHHH-HhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLE-GISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~-~i~~~l~~~~iIV~~~~ 234 (460)
|+.... ++. .....++++.+++++..
T Consensus 264 atG~~~---~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 264 TTGNKD---IITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCCCHH---HHHHHHHhcCCCCcEEEEeCC
Confidence 876433 333 34667888999888764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00016 Score=68.06 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=31.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+..||+|+|+|.||+.+|..|++.|. .+++++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 35799999999999999999999993 269999988
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00056 Score=70.75 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=67.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..++.|||+|-||...|..|.++|. .+|++.+|+.+++..+.++-. . .+...+++.+.+.++|+||.+
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~-~----------~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG-A----------EAVALEELLEALAEADVVISS 245 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC-C----------eeecHHHHHHhhhhCCEEEEe
Confidence 4789999999999999999999985 689999999999998887521 0 112234666778999999999
Q ss_pred cchhc--H-HHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQF--S-SSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~--~-~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+.+.. + .+.++...+. ++.-++|++..
T Consensus 246 Tsa~~~ii~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 246 TSAPHPIITREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred cCCCccccCHHHHHHHHhc-ccCeEEEEecC
Confidence 87542 2 3333333221 12246788764
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00039 Score=68.52 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+++.|+|+|.+|.+++..|++.| ++|++++|+.++++.+.+.-.. .+ .+...+..+....++|+||.|
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g--~~v~v~~R~~~~~~~la~~~~~---~~------~~~~~~~~~~~~~~~DivIna 185 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKAD--CNVIIANRTVSKAEELAERFQR---YG------EIQAFSMDELPLHRVDLIINA 185 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhh---cC------ceEEechhhhcccCccEEEEC
Confidence 578999999999999999999998 8999999998887777653110 00 011211112233579999999
Q ss_pred cchhc---HHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQF---SSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~---~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|..- ..++. -....++++.+++++.-
T Consensus 186 tp~gm~~~~~~~~-~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 186 TSAGMSGNIDEPP-VPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCCCCC-CCHHHcCCCCEEEEecc
Confidence 99742 21110 01234667888998864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00057 Score=69.09 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=63.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCHHH--HHHHHh--hcCCCccCCCCCCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPAV--CQSINE--KHCNCRYFPEQKLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~-----~V~v~~r~~~~--~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (460)
.+||+|||+ |.+|..+|..|+..|.-. ++.++|..+.. ++.... .+... .+..++.+..+..+.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~------~~~~~~~i~~~~~~~ 75 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF------PLLAEIVITDDPNVA 75 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc------cccCceEEecCcHHH
Confidence 479999999 999999999999877423 79999985421 221111 01100 011123444444456
Q ss_pred cCCCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 197 LLGADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 197 ~~~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+++||+||++--. . .++++.+.|.++.+++.++|.++|-+
T Consensus 76 ~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 76 FKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 8999999997532 1 13444556666664567777777743
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00065 Score=68.24 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=63.5
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe---CCHHhhcCCCcEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~---~~~~ea~~~aDiV 203 (460)
|||+|||+ |++|+.+|..|+..+.-.++.++|.+ +++ |...+ +.+-..+..+..+ +|+.+.+++||+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~-----g~alD-L~~~~~~~~i~~~~~~~~~y~~~~daDiv 72 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP-----GVAAD-LSHINTPAKVTGYLGPEELKKALKGADVV 72 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc-----eeehH-hHhCCCcceEEEecCCCchHHhcCCCCEE
Confidence 69999999 99999999999988754589999987 211 11000 0000011234432 2334568999999
Q ss_pred EEccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|++.-. . .+.++.+.|.++ .++.++|..+|-++
T Consensus 73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvD 121 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVN 121 (310)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchh
Confidence 987532 1 123344455555 46788888888554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0009 Score=67.22 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=62.2
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCcEEEEcc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHAM 207 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVilaV 207 (460)
||+|||+|.+|..+|..|+..+.-.++.++|.++++++.....-.....+ ....++.+ +.+.+ .+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~---~~~~~~~i~~~~y~-~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATAL---TYSTNTKIRAGDYD-DCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhcc---CCCCCEEEEECCHH-HhCCCCEEEECC
Confidence 79999999999999999998875458999999876543222110000000 00112233 34554 479999999975
Q ss_pred ch----hcH--------------HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 208 PV----QFS--------------SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 208 p~----~~~--------------~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
-. ... +++.+.+.++- ++.+++..+|-+
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPv 122 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPL 122 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcH
Confidence 32 112 22223344444 567788777744
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00058 Score=68.93 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCH---HhhcCC
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDA---KTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~--~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea~~~ 199 (460)
+|.||+|||+ |.+|+.+|..|+..+...++.++|++....+ .+.. ... ...+...++. .+++++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~--~~~--------~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSH--IDT--------PAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhh--cCc--------CceEEEecCCCchHHHhCC
Confidence 5789999999 9999999999996665468999999432211 1111 000 1123333231 467899
Q ss_pred CcEEEEccch--h--------------cHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 200 ADYCLHAMPV--Q--------------FSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 200 aDiVilaVp~--~--------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
||+||++.-. . .+.++++.+.++ .++.+++..+|+++.
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 9999987632 1 122233344443 456688888887664
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00035 Score=70.21 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=48.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+++||+|||+|+||...+..+.++. +.+++ +|++++ +.+. + .. .+....+..+.+.++|+|
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~p-d~ELVgV~dr~~~~~~~---~-~~------------~v~~~~d~~e~l~~iDVV 64 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQP-DMELVGVFSRRGAETLD---T-ET------------PVYAVADDEKHLDDVDVL 64 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCC-CcEEEEEEcCCcHHHHh---h-cC------------CccccCCHHHhccCCCEE
Confidence 4589999999999999999998652 26766 678875 3221 1 11 112234566667889999
Q ss_pred EEccchhc
Q 012596 204 LHAMPVQF 211 (460)
Q Consensus 204 ilaVp~~~ 211 (460)
++|+|+..
T Consensus 65 iIctPs~t 72 (324)
T TIGR01921 65 ILCMGSAT 72 (324)
T ss_pred EEcCCCcc
Confidence 99999754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00045 Score=63.21 Aligned_cols=74 Identities=26% Similarity=0.284 Sum_probs=56.9
Q ss_pred CCCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~m-G~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||+|.| |..++..|.+.| .+|++.+|+.+ ++.+.+.++|+||
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g--~~V~v~~r~~~----------------------------~l~~~l~~aDiVI 92 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRN--ATVTVCHSKTK----------------------------NLKEHTKQADIVI 92 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC--CEEEEEECCch----------------------------hHHHHHhhCCEEE
Confidence 3589999999997 888999999988 78999998742 3445678999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
.++++..+ +-. +.++++.++|++..
T Consensus 93 sat~~~~i--i~~---~~~~~~~viIDla~ 117 (168)
T cd01080 93 VAVGKPGL--VKG---DMVKPGAVVIDVGI 117 (168)
T ss_pred EcCCCCce--ecH---HHccCCeEEEEccC
Confidence 99998542 111 23456788888864
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0014 Score=66.35 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=65.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCH--HHHHHHH--hhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDP--AVCQSIN--EKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~-----~V~v~~r~~--~~~~~l~--~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+..||+|||+ |.+|..+|..|...+.-. ++.++|..+ ++++... -.+....+. .++.+..+..+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~------~~~~i~~~~~~ 75 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL------AGVVATTDPEE 75 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc------CCcEEecChHH
Confidence 4579999998 999999999999887423 799999854 2222111 111110111 12233334445
Q ss_pred hcCCCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 196 ALLGADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 196 a~~~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
.+++||+||++--. . .++++.++|.++.+++.+++..+|-+
T Consensus 76 ~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 76 AFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 68999999987532 1 14455566777765577888777743
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00078 Score=62.87 Aligned_cols=97 Identities=27% Similarity=0.329 Sum_probs=63.6
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--CC---HHhhcCC
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--TD---AKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~--~~---~~ea~~~ 199 (460)
+.+++.|+|+ |.+|..++..|++.| ++|++++|+.++++.+.+.-. ..+ + ..+... .+ ..+++.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g--~~V~l~~R~~~~~~~l~~~l~-~~~--~----~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG--ARVVLVGRDLERAQKAADSLR-ARF--G----EGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHH-hhc--C----CcEEEeeCCCHHHHHHHHhc
Confidence 3579999996 999999999999988 899999999988777654310 000 0 011111 12 2456789
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|+||.+++.... .........+++.+++++.
T Consensus 98 ~diVi~at~~g~~--~~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 98 ADVVFAAGAAGVE--LLEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CCEEEECCCCCce--echhhhcccCceeEEEEcc
Confidence 9999999996553 1111122233466788765
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00067 Score=68.78 Aligned_cols=94 Identities=20% Similarity=0.353 Sum_probs=66.2
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+++|||+|.+|...+..|.. .+. .+|++|+|++++++++.+.-.. . +...+...++++++++++|+|+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i-~~v~V~~R~~~~a~~~a~~~~~-~------~g~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDI-RSARIWARDSAKAEALALQLSS-L------LGIDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCc-cEEEEECCCHHHHHHHHHHHHh-h------cCceEEEeCCHHHHhccCCEEEE
Confidence 4689999999999999999974 442 5799999999988887654110 0 01124456788888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
|+|+.. .++. ...+++++.+..+
T Consensus 201 aT~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 201 TTPSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred ecCCCC--cEec--HHHcCCCcEEEee
Confidence 999743 1111 1345677766543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0016 Score=64.96 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=61.1
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTAL--- 197 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~--- 197 (460)
||+++||||||+|.+|..+...+.+.. +.++. +++++++.. +..++.|.. ...++.++.+
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~~-~velvAVvdid~es~gla~A~~~Gi~-------------~~~~~ie~LL~~~ 66 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRSE-HLEPGAMVGIDPESDGLARARRLGVA-------------TSAEGIDGLLAMP 66 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcCC-CcEEEEEEeCChhhHHHHHHHHcCCC-------------cccCCHHHHHhCc
Confidence 446689999999999999888887643 25665 778887532 233333321 1123566655
Q ss_pred --CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 198 --LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 198 --~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+.|+||++++.....+......+ .|..+|+.+
T Consensus 67 ~~~dIDiVf~AT~a~~H~e~a~~a~e---aGk~VID~s 101 (302)
T PRK08300 67 EFDDIDIVFDATSAGAHVRHAAKLRE---AGIRAIDLT 101 (302)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHH---cCCeEEECC
Confidence 468999999998766665544433 467777665
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00052 Score=71.68 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=57.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||.|||+|.||..++..|+..|. .++++++|+.++++.+.+.... ..+...++..+.+.++|+||.|
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~----------~~~~~~~~l~~~l~~aDiVI~a 249 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRN----------ASAHYLSELPQLIKKADIIIAA 249 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcC----------CeEecHHHHHHHhccCCEEEEC
Confidence 4799999999999999999999883 4799999999988888764210 0112234556778899999999
Q ss_pred cchhc
Q 012596 207 MPVQF 211 (460)
Q Consensus 207 Vp~~~ 211 (460)
+++..
T Consensus 250 T~a~~ 254 (414)
T PRK13940 250 VNVLE 254 (414)
T ss_pred cCCCC
Confidence 98643
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.015 Score=59.61 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=136.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-CccC-CCC------CCCCceE---EeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CRYF-PEQ------KLPENVI---ATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~-~~~~-~~~------~l~~~i~---a~~~~~e 195 (460)
|.+|.|+|+|..+--+|..|.+.+ .+.|-+.+|...+.+++-+.-.+ ...+ ... .+...+. +..+.++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~ 79 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEE 79 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHH
Confidence 468999999999999999999876 35799999977665544332110 0000 000 0111111 3457788
Q ss_pred hcCCCcEEEEccchhcHHHHHHHhh-hcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEE---EECcccHH--
Q 012596 196 ALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA---LSGPSFAL-- 269 (460)
Q Consensus 196 a~~~aDiVilaVp~~~~~~vl~~i~-~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v---~~gP~~a~-- 269 (460)
...+.|.+|+|||+++..+|+++|. +.++.=..+|-++..++.. ..+...+.+. +. ...+.. ..|.+...
T Consensus 80 i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~--~lv~~~l~~~-~~-~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 80 IEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSH--LLVKGFLNDL-GP-DAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred hcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchH--HHHHHHHHhc-CC-CceEEEeecccccceeccC
Confidence 8888999999999999999999984 3454445666677666653 2444555443 21 111111 11221111
Q ss_pred -----HHhccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHH--------HHHHHHHHHHH--HHHhcc
Q 012596 270 -----ELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIA--------GALKNVLAIAA--GIVVGM 332 (460)
Q Consensus 270 -----e~~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~--------kalkNv~ai~~--g~~~~~ 332 (460)
.+..|....+-+|+ .+.....++..+|+..|+.+...+....+|.. .++.|-.++.. +-...-
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~ 235 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP 235 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence 01112222334554 34567899999999999999888876666533 22334333321 111111
Q ss_pred ----cC---C--CcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 333 ----NL---G--NNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 333 ----kl---~--~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
|+ | ......-+...-.|+..+..++|+++-.
T Consensus 236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~N 275 (429)
T PF10100_consen 236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFN 275 (429)
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcch
Confidence 11 1 2344555777889999999999987433
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=66.43 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=64.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiVil 205 (460)
+||+|||+|.+|+++|..|...+...++.++|+.++..+-.... ..+-. ........+.. +.+ .++++|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D---L~~~~-~~~~~~~~i~~~~~y~-~~~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD---LSHAA-APLGSDVKITGDGDYE-DLKGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc---hhhcc-hhccCceEEecCCChh-hhcCCCEEEE
Confidence 69999999999999999998877656999999985433211110 00000 00111233333 344 4799999999
Q ss_pred cc--chh--------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 206 AM--PVQ--------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 206 aV--p~~--------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+- |.. .+.++.+++.++.+ +.+++..+|-++
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD 122 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVD 122 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHH
Confidence 76 321 13334445555544 677777777544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0014 Score=57.57 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||.+||+| .|..+|..|++.| ++|+.+|.+++.++.+++.+..... .+. +..++ +.-+++|+|--.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~~~~v~-dDl-------f~p~~-~~y~~a~liysi 84 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLGLNAFV-DDL-------FNPNL-EIYKNAKLIYSI 84 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhCCeEEE-CcC-------CCCCH-HHHhcCCEEEEe
Confidence 4789999999 9999999999999 9999999999988888776542110 111 01122 346789999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
=|...+..-+-.+++.+.-+-+|..+++
T Consensus 85 rpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 85 RPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 8987776666677777765555555553
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0034 Score=64.02 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=63.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCcc--CCCCC--C-CCceEEeCCHHhhcCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRY--FPEQK--L-PENVIATTDAKTALLG 199 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~--~~~~~--l-~~~i~a~~~~~ea~~~ 199 (460)
|+||||+|+|.||..++..+.+.. +.+|+ +++++++....+.++ |.. .| ++... + ...+.+..+.++...+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~-d~eLvav~d~~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP-DMELVGVAKTKPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC-CcEEEEEECCChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCChhHhhcc
Confidence 479999999999999999988653 36766 455565545444442 321 11 01000 1 1245566677777788
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+|+||.|++.....+...... +.|..+|..
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~ 108 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYE---KAGVKAIFQ 108 (341)
T ss_pred CCEEEECCCchhhHHHHHHHH---HCCCEEEEc
Confidence 999999999876665554333 235555543
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=65.88 Aligned_cols=77 Identities=30% Similarity=0.422 Sum_probs=55.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.-.. . .+. ..+...++..+.+.++|+||-|
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~-~-~~~----~~~~~~~~~~~~~~~aDiVIna 199 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNA-R-FPA----ARATAGSDLAAALAAADGLVHA 199 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHh-h-CCC----eEEEeccchHhhhCCCCEEEEC
Confidence 4789999999999999999999883 3799999999988887653100 0 000 0122223444556889999999
Q ss_pred cchh
Q 012596 207 MPVQ 210 (460)
Q Consensus 207 Vp~~ 210 (460)
+|..
T Consensus 200 Tp~G 203 (284)
T PRK12549 200 TPTG 203 (284)
T ss_pred CcCC
Confidence 9853
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0049 Score=58.17 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=55.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||+|.+|...+..|.+.| .+|++++++.. .+..+...+. ..+. .-.-.. +.+.++|+||
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~~~~-i~~~---------~~~~~~-~~l~~adlVi 75 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVEEGK-IRWK---------QKEFEP-SDIVDAFLVI 75 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHhCCC-EEEE---------ecCCCh-hhcCCceEEE
Confidence 3579999999999999999999999 89999987642 3344443321 1110 000012 2367899999
Q ss_pred EccchhcHHHHHHHh
Q 012596 205 HAMPVQFSSSFLEGI 219 (460)
Q Consensus 205 laVp~~~~~~vl~~i 219 (460)
.|+.+..+...+...
T Consensus 76 aaT~d~elN~~i~~~ 90 (202)
T PRK06718 76 AATNDPRVNEQVKED 90 (202)
T ss_pred EcCCCHHHHHHHHHH
Confidence 999988876655444
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=67.14 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=63.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCcEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVi 204 (460)
|||+|+|+ |.+|..+.+.|.+.- ..++. ++++++...+.+.+.... +.+. ....+. .+.++...++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP-~~el~~l~~s~~sagk~~~~~~~~---l~~~---~~~~~~~~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHP-EVEITYLVSSRESAGKPVSEVHPH---LRGL---VDLNLEPIDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC-CceEEEEeccchhcCCChHHhCcc---cccc---CCceeecCCHHHhhcCCCEEE
Confidence 68999998 999999999999762 36777 546554222222221110 0010 011121 14455556899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+|+|.....++...+.+ .|..||+++..+-
T Consensus 74 ~alP~~~s~~~~~~~~~---~G~~VIDlS~~fR 103 (346)
T TIGR01850 74 LALPHGVSAELAPELLA---AGVKVIDLSADFR 103 (346)
T ss_pred ECCCchHHHHHHHHHHh---CCCEEEeCChhhh
Confidence 99999887777666543 5788999986543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=66.03 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCCeEEEECcchHH-HHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--Cc
Q 012596 126 RTNKVVVLGGGSFG-TAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG-~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD 201 (460)
+++||||||+|.++ ...+..+.+.+.. .-|.++|+++++++++.+.... + ...+|.++++++ .|
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~---------~---~~~~~~~~ll~~~~iD 69 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI---------A---KAYTDLEELLADPDID 69 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC---------C---cccCCHHHHhcCCCCC
Confidence 57899999999555 5678888776511 2366889999998888775211 1 355688888875 69
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
+|++++|.....++... .+..|.. |-|-|-+..
T Consensus 70 ~V~Iatp~~~H~e~~~~---AL~aGkh-Vl~EKPla~ 102 (342)
T COG0673 70 AVYIATPNALHAELALA---ALEAGKH-VLCEKPLAL 102 (342)
T ss_pred EEEEcCCChhhHHHHHH---HHhcCCE-EEEcCCCCC
Confidence 99999998765554422 2333443 334555543
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0018 Score=65.10 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=63.9
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--C-CHHhhcCCCcEEE
Q 012596 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--T-DAKTALLGADYCL 204 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~--~-~~~ea~~~aDiVi 204 (460)
||+|||+ |++|+.+|..|+..+...++.++|+++.. |...+ +.+...+..+..+ + ++.++++++|+||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-------g~a~D-L~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-------GVAAD-LSHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-------EEEch-hhcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 7999999 99999999999988754589999987621 21100 1111111234442 2 2356789999999
Q ss_pred Eccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 205 HAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 205 laVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++.-. . .+.++.+.|.++ .++.++|..+|-++
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvD 120 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVN 120 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchh
Confidence 87632 1 123344455555 46788898888554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0037 Score=56.55 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=53.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|.|||+|.+|..-+..|.+.| ++|++++.+ ..+.+.+.+ ..... . ... ...+ +.++|+||.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp~--~~~~l~~l~-~i~~~-----~---~~~-~~~d-l~~a~lVia 76 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSPE--ICKEMKELP-YITWK-----Q---KTF-SNDD-IKDAHLIYA 76 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCc--cCHHHHhcc-CcEEE-----e---ccc-Chhc-CCCceEEEE
Confidence 3589999999999999999999999 999999643 334444321 00000 0 000 1222 678999999
Q ss_pred ccchhcHHHHHHHh
Q 012596 206 AMPVQFSSSFLEGI 219 (460)
Q Consensus 206 aVp~~~~~~vl~~i 219 (460)
++.+..+...+...
T Consensus 77 aT~d~e~N~~i~~~ 90 (157)
T PRK06719 77 ATNQHAVNMMVKQA 90 (157)
T ss_pred CCCCHHHHHHHHHH
Confidence 99988776655444
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0031 Score=72.44 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=57.0
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCe-------------EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-e
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLK-------------VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-T 190 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~-------------V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~ 190 (460)
.+++||+|||+|.||...+..|++.. +.+ |++.|++.+.++++.+...+.. .+.. .
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~-~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~---------~v~lDv 636 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVK-TISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE---------AVQLDV 636 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCc-CccccccccccccccEEEEECCCHHHHHHHHHhcCCCc---------eEEeec
Confidence 34679999999999999999999764 133 8899999988887766321100 1222 3
Q ss_pred CCHHhh---cCCCcEEEEccchhcHHHHH
Q 012596 191 TDAKTA---LLGADYCLHAMPVQFSSSFL 216 (460)
Q Consensus 191 ~~~~ea---~~~aDiVilaVp~~~~~~vl 216 (460)
.|.+++ ++++|+||.|+|......++
T Consensus 637 ~D~e~L~~~v~~~DaVIsalP~~~H~~VA 665 (1042)
T PLN02819 637 SDSESLLKYVSQVDVVISLLPASCHAVVA 665 (1042)
T ss_pred CCHHHHHHhhcCCCEEEECCCchhhHHHH
Confidence 354443 36799999999976444433
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00038 Score=65.57 Aligned_cols=261 Identities=14% Similarity=0.117 Sum_probs=137.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH----H-------HHhhcCCCccCCCCCCC---CceEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ----S-------INEKHCNCRYFPEQKLP---ENVIATTD 192 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~----~-------l~~~g~~~~~~~~~~l~---~~i~a~~~ 192 (460)
.-||+|+|.|-+|+.+|..++..| ++|.+||..++++. . +.+.|.- + +.+... .-+..+++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~G--yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~l-r--Gnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSG--YQVQLYDILEKQLQTALENVEKELRKLEEHGLL-R--GNLSADEQLALISGTTS 77 (313)
T ss_pred ccceeEeecccccchHHHHHhccC--ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhh-c--cCccHHHHHHHHhCCcc
Confidence 469999999999999999999999 99999999887542 1 2222210 0 011100 11345678
Q ss_pred HHhhcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012596 193 AKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE 270 (460)
Q Consensus 193 ~~ea~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e 270 (460)
+.|+++++=.|--|+|.. .-..++.++-..+.+.+++-+.+..+.+. ..++-+... .-+.+.-|..+--
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS---~~s~gL~~k------~q~lvaHPvNPPy 148 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPS---KFSAGLINK------EQCLVAHPVNPPY 148 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChH---HHhhhhhhh------hheeEecCCCCCc
Confidence 999999998899999964 23556677777777766665555445443 122222111 1122233321110
Q ss_pred HhccCCeEEEEcc-CCHHHHHHHHHHHhcCCceEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012596 271 LMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (460)
Q Consensus 271 ~~~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~-~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~ 348 (460)
.. -...++.+. ..++.+++-++++.+.|-+.. ....+.|. . - ..+-.+.++
T Consensus 149 fi--PLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf-----~-----------------l---nriq~Ailn 201 (313)
T KOG2305|consen 149 FI--PLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGF-----A-----------------L---NRIQYAILN 201 (313)
T ss_pred cc--chheeccCCCCChhHHHHHHHHHHHhCCCCcccccccccc-----e-----------------e---ccccHHHHH
Confidence 00 001112222 246788999999998875533 33333221 0 0 112245667
Q ss_pred HHHHHHHHcCCCccccccc--cCCCceee---ecccCCCcc----chHHHHhhCCCChHHHHhhcccceehhhhHHHHHH
Q 012596 349 EIRWLATKMGAKPATITGL--SGTGDIML---TCFVNLSRN----RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIA 419 (460)
Q Consensus 349 E~~~la~a~Gi~~~~~~~~--~~~gd~~~---t~~s~~srn----~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~ 419 (460)
|..++...-++...++-.+ .|+|-.+. .+.- ..-| ..+-.+...| +..+.+.||...+.. |-..+.+
T Consensus 202 e~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET-~HLNA~Gv~dYf~Rys~~--I~aV~~t~GpiP~~~-d~~t~~k 277 (313)
T KOG2305|consen 202 ETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLET-AHLNAEGVADYFKRYSAG--ITAVLKTMGPIPDFT-DRKTANK 277 (313)
T ss_pred HHHHHHHccCcchhhHHHHHhcCCCcchhcccchhh-hhcCcHHHHHHHHHhhhh--HHHHHHHcCCCCCCc-chhHHHH
Confidence 8877776655553332111 23332110 0000 0001 0111222221 122344444444432 4567788
Q ss_pred HHHHcCCCChHHH
Q 012596 420 LAQKYNVKMPVLT 432 (460)
Q Consensus 420 lA~~~gv~~P~~~ 432 (460)
++++.+-.+|+-.
T Consensus 278 v~~ql~~~v~~d~ 290 (313)
T KOG2305|consen 278 VAEQLEPKVSLDN 290 (313)
T ss_pred HHHHHhhccCchh
Confidence 8888888888766
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=61.29 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 45799999999999999999999994 4799999873
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0035 Score=63.20 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=61.5
Q ss_pred CeEEEECc-chHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--eCCHHhhcCCCcEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiV 203 (460)
|||+|||+ |.+|.+++..|.. .+..++++++++++. .+ +...+ +........+.. .+++.+.++++|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~-----g~alD-l~~~~~~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TP-----GVAVD-LSHIPTAVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Cc-----ceehh-hhcCCCCceEEEeCCCCHHHHcCCCCEE
Confidence 79999999 9999999998855 333478999998753 11 11000 000000012222 34655678999999
Q ss_pred EEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|+|.-.. .+.++++.+.++ .++.+++..+|-.+
T Consensus 74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 9987421 123344445554 45678888887443
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0045 Score=63.16 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=58.8
Q ss_pred ccCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C
Q 012596 124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G 199 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~ 199 (460)
|++++||||||+|.||.. .+..+.+.. +.+++ +++++++++. +.. + .+.+++|.+++++ +
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~-~~~l~av~d~~~~~~~---~~~------~------~~~~~~~~~ell~~~~ 64 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTP-GLELAAVSSSDATKVK---ADW------P------TVTVVSEPQHLFNDPN 64 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCC-CCEEEEEECCCHHHHH---hhC------C------CCceeCCHHHHhcCCC
Confidence 334579999999999984 455565532 26666 7888876443 110 0 1235678888885 5
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
.|+|++|+|.....++..... +.|..|+ +-|-+.
T Consensus 65 vD~V~I~tp~~~H~~~~~~al---~aGkhVl-~EKPla 98 (346)
T PRK11579 65 IDLIVIPTPNDTHFPLAKAAL---EAGKHVV-VDKPFT 98 (346)
T ss_pred CCEEEEcCCcHHHHHHHHHHH---HCCCeEE-EeCCCC
Confidence 799999999876555443332 2354444 455444
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0023 Score=58.48 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=49.7
Q ss_pred EEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccc
Q 012596 130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (460)
Q Consensus 130 I~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (460)
|.|+|+ |.+|..++..|.+.| ++|+++.|++++.+. ..+. ........ -.++..++++++|.||.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~~--~~~~--~~~~~d~~-----d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSKAED--SPGV--EIIQGDLF-----DPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGHHH--CTTE--EEEESCTT-----CHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchhccc--cccc--ccceeeeh-----hhhhhhhhhhhcchhhhhhh
Confidence 789996 999999999999999 999999999987765 2221 11100000 00234667889999999997
Q ss_pred h
Q 012596 209 V 209 (460)
Q Consensus 209 ~ 209 (460)
.
T Consensus 70 ~ 70 (183)
T PF13460_consen 70 P 70 (183)
T ss_dssp S
T ss_pred h
Confidence 4
|
... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0026 Score=64.36 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=63.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCCH--HHHHHHHhhcCCCccCCCC--CCCCceEEeCCHHhhc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDP--AVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTAL 197 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~-----~~V~v~~r~~--~~~~~l~~~g~~~~~~~~~--~l~~~i~a~~~~~ea~ 197 (460)
.||+|+|+ |.+|+.++..|+..+.- .++.++|+++ +.++.... .+.+. .+.....+..+..+.+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~------Dl~d~~~~~~~~~~i~~~~~~~~ 74 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM------ELQDCAFPLLKGVVITTDPEEAF 74 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee------ehhhhcccccCCcEEecChHHHh
Confidence 38999999 99999999999986641 2599999986 43221110 00010 0111233444555678
Q ss_pred CCCcEEEEccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 198 LGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 198 ~~aDiVilaVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++||+||++--. . .++++..+|.++..++.++|.++|-+
T Consensus 75 ~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 75 KDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred CCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 999999986522 1 13444556666654667777777644
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0072 Score=51.10 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=59.5
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hh-hcCCCcEEEE
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADYCLH 205 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~aDiVil 205 (460)
|.|+|.|.+|..++..|.+.+ .+|++++++++.++.+.+.|....+ ++. .+. ++ -++++|.|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~~~~i~-gd~---------~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELREEGVEVIY-GDA---------TDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTSEEEE-S-T---------TSHHHHHHTTGGCESEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhccccccc-ccc---------hhhhHHhhcCccccCEEEE
Confidence 679999999999999999965 6999999999999999887743111 110 122 11 2468999999
Q ss_pred ccchhcHHH-HHHHhhhcCCCCCeEEE
Q 012596 206 AMPVQFSSS-FLEGISDYVDPGLPFIS 231 (460)
Q Consensus 206 aVp~~~~~~-vl~~i~~~l~~~~iIV~ 231 (460)
+++.....- ++..+.... +...++.
T Consensus 69 ~~~~d~~n~~~~~~~r~~~-~~~~ii~ 94 (116)
T PF02254_consen 69 LTDDDEENLLIALLARELN-PDIRIIA 94 (116)
T ss_dssp ESSSHHHHHHHHHHHHHHT-TTSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHC-CCCeEEE
Confidence 999765443 333344433 3344443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0027 Score=64.35 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=64.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCC-----CCeEEEEeCCHH--HHHHHHhhcCCCccCCCC--CCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPA--VCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~-----~~~V~v~~r~~~--~~~~l~~~g~~~~~~~~~--~l~~~i~a~~~~~ea 196 (460)
..||+|+|+ |.+|+.++..|...+. +.+|.++|+++. .++ |...+ +.+. .+..++....+..++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~-----g~~~D-l~d~~~~~~~~~~~~~~~~~~ 75 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALE-----GVVME-LQDCAFPLLKSVVATTDPEEA 75 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccc-----ceeee-hhhccccccCCceecCCHHHH
Confidence 468999999 9999999999998552 148999999652 121 11100 0010 011234445666677
Q ss_pred cCCCcEEEEccch----hc------------HHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 197 LLGADYCLHAMPV----QF------------SSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 197 ~~~aDiVilaVp~----~~------------~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+++||+||++--. .. +.++.+.|.++.+++.++|..+|-+
T Consensus 76 l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (325)
T cd01336 76 FKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA 131 (325)
T ss_pred hCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH
Confidence 8999999986521 11 2344456666665677777777743
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0045 Score=63.97 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=64.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEE--eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYML--MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~-----~V~v~--~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
..||+|||+ |++|..+|..|+..+.-. .++++ |++.++++...-.-.... ..+..++.++++..+.++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a----~~~~~~v~i~~~~y~~~k 119 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSL----YPLLREVSIGIDPYEVFE 119 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhh----hhhcCceEEecCCHHHhC
Confidence 479999999 999999999999877411 24444 777776543322100000 001123554444445689
Q ss_pred CCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 199 GADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 199 ~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+||+||++--. . .++++...|.++.+++.++|.++|-+
T Consensus 120 daDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv 173 (387)
T TIGR01757 120 DADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC 173 (387)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence 99999996422 1 13344455666665777888887744
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0067 Score=60.20 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=57.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+||||||+|.||..++..+.+.. +.++. +++++++.. +..++.|.. ...++.+++++ +.|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~-~~elvaV~d~d~es~~la~A~~~Gi~-------------~~~~~~e~ll~~~dIDa 67 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSE-HLEMVAMVGIDPESDGLARARELGVK-------------TSAEGVDGLLANPDIDI 67 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCC-CcEEEEEEeCCcccHHHHHHHHCCCC-------------EEECCHHHHhcCCCCCE
Confidence 68999999999999887777543 25655 678887642 222223321 12346666654 5899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|++++|.....+...... +.|..+++..
T Consensus 68 V~iaTp~~~H~e~a~~al---~aGk~VIdek 95 (285)
T TIGR03215 68 VFDATSAKAHARHARLLA---ELGKIVIDLT 95 (285)
T ss_pred EEECCCcHHHHHHHHHHH---HcCCEEEECC
Confidence 999999876655544433 3466666543
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0032 Score=64.09 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..+|.|||+|.+|+.+|..|+++|. ..++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 45799999999999999999999994 3799999875
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0034 Score=62.16 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=64.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+++.|+|+|.+|.+++..|+..|. .+|++++|+.++++.+.+..... . .+....+..+.+.++|+||-|
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~---~------~~~~~~~~~~~~~~~DivIna 192 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGAL---G------KAELDLELQEELADFDLIINA 192 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhc---c------ceeecccchhccccCCEEEEC
Confidence 4689999999999999999998873 58999999999888876642110 0 011111333556789999999
Q ss_pred cchhcHHH--HHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSS--FLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~--vl~~i~~~l~~~~iIV~~~ 233 (460)
+|..-... ...-....++++..++++.
T Consensus 193 Tp~g~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 193 TSAGMSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 99643211 0000113345677777775
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0025 Score=65.90 Aligned_cols=100 Identities=20% Similarity=0.356 Sum_probs=63.4
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
++|||+|+|+ |..|..+.+.|.++. .++|+.+.+++..-+.+...+.... +.... .+.. .+..+ ++++|+||
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~saG~~i~~~~~~l~---~~~~~-~~~~-~~~~~-~~~~DvVf 109 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKAGQSFGSVFPHLI---TQDLP-NLVA-VKDAD-FSDVDAVF 109 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhcCCCchhhCcccc---Ccccc-ceec-CCHHH-hcCCCEEE
Confidence 3579999996 999999999999873 3789988886543322222221100 01111 0111 12222 47899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+|.....+++..+ ..+..||+++.-.
T Consensus 110 ~Alp~~~s~~i~~~~----~~g~~VIDlSs~f 137 (381)
T PLN02968 110 CCLPHGTTQEIIKAL----PKDLKIVDLSADF 137 (381)
T ss_pred EcCCHHHHHHHHHHH----hCCCEEEEcCchh
Confidence 999998666666554 3578899987543
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0043 Score=66.19 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=67.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC---CCCc-eEEe-CC--------H
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPEN-VIAT-TD--------A 193 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~---l~~~-i~a~-~~--------~ 193 (460)
..|+.|+|+|.+|...+..+...| ..|++++++.++.+.+++.|.....++... -... .+.. .+ .
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 369999999999999999999888 789999999988877776654321111000 0000 0111 11 2
Q ss_pred HhhcCCCcEEEEcc-----chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 194 KTALLGADYCLHAM-----PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 194 ~ea~~~aDiVilaV-----p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+.++++|+||.++ |... =+.++..+.+++|.+||+++
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~--Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPK--LITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCe--eehHHHHhhCCCCCEEEEee
Confidence 34467899999988 3321 12344566788899999875
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0027 Score=65.67 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=49.9
Q ss_pred EEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEe--CCHHhhcCCCcEEE
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIAT--TDAKTALLGADYCL 204 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~--~~~~ea~~~aDiVi 204 (460)
|.|+|+|.+|..++..|++.+. + +|++.+|+.++++++.+. +.+.... .+.+. .++.++++++|+||
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~-~~~v~va~r~~~~~~~~~~~~~~~~~~~~-------~~d~~~~~~l~~~~~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP-FEEVTVADRNPEKAERLAEKLLGDRVEAV-------QVDVNDPESLAELLRGCDVVI 72 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC-E-EEEEEESSHHHHHHHHT--TTTTEEEE-------E--TTTHHHHHHHHTTSSEEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCC-CCcEEEEECCHHHHHHHHhhccccceeEE-------EEecCCHHHHHHHHhcCCEEE
Confidence 7899999999999999999862 3 899999999998888753 2111110 00011 12456788999999
Q ss_pred Eccchhc
Q 012596 205 HAMPVQF 211 (460)
Q Consensus 205 laVp~~~ 211 (460)
-|++...
T Consensus 73 n~~gp~~ 79 (386)
T PF03435_consen 73 NCAGPFF 79 (386)
T ss_dssp E-SSGGG
T ss_pred ECCccch
Confidence 9998653
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0028 Score=64.41 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=58.1
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCC
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGA 200 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~a 200 (460)
|++|+||+|+|+ |.+|.-+.+.|.+.++. .++..+... +.+ |.... +.+. .+.+.. +..+ ++++
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a------G~~l~-~~~~----~l~~~~~~~~~-~~~v 67 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA------GHSVP-FAGK----NLRVREVDSFD-FSQV 67 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC------CCeec-cCCc----ceEEeeCChHH-hcCC
Confidence 456789999996 99999999999976621 233344332 211 21111 1111 122221 2233 4789
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|++|+++|......++..+.+ .|..+|+++.
T Consensus 68 D~vFla~p~~~s~~~v~~~~~---~G~~VIDlS~ 98 (336)
T PRK05671 68 QLAFFAAGAAVSRSFAEKARA---AGCSVIDLSG 98 (336)
T ss_pred CEEEEcCCHHHHHHHHHHHHH---CCCeEEECch
Confidence 999999997655555555433 4778999875
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0027 Score=62.88 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=57.6
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||.|. +|.++|..|.+.| ..|+++.+.. .++.+.++.||+||
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~g--atVtv~~s~t----------------------------~~l~~~~~~ADIVI 206 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKN--ASVTILHSRS----------------------------KDMASYLKDADVIV 206 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHHHhhCCEEE
Confidence 358999999988 9999999999888 8999988643 14556678999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++...+ +. ..++++++++|++.
T Consensus 207 sAvg~p~~---i~--~~~vk~gavVIDvG 230 (286)
T PRK14175 207 SAVGKPGL---VT--KDVVKEGAVIIDVG 230 (286)
T ss_pred ECCCCCcc---cC--HHHcCCCcEEEEcC
Confidence 99987542 11 13467899999875
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0036 Score=64.73 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=67.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+++|||+|..|..-...++.-.. -.+|.+|+|++++++++.++-.. .+++. ..+.++++.++++++||+|+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~--~~~~~---~~v~~~~s~~eav~~ADIVvt 229 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAE--TYPQI---TNVEVVDSIEEVVRGSDIVTY 229 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH--hcCCC---ceEEEeCCHHHHHcCCCEEEE
Confidence 4789999999999999998876321 15899999999988877653210 01110 125677899999999999999
Q ss_pred ccchhc----HHHHHHHhhhcCCCCCeEEE
Q 012596 206 AMPVQF----SSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 206 aVp~~~----~~~vl~~i~~~l~~~~iIV~ 231 (460)
|+++.. ...+++ .+.+++|+.|+.
T Consensus 230 aT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 230 CNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred ccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 997532 112221 245678877764
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0046 Score=65.15 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=63.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH----hhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK----TALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~----ea~~~aDi 202 (460)
+++|.|+|+|.+|..++..|.+.| ++|++++++++.++.+.+.+.....+.+. .++.+ ..++++|.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~--~~v~vid~~~~~~~~~~~~~~~~~~i~gd--------~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG--YSVKLIERDPERAEELAEELPNTLVLHGD--------GTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHCCCCeEEECC--------CCCHHHHHhcCCccCCE
Confidence 589999999999999999999988 89999999999888887754221111000 01221 12468999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEE
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
|+++++.....-++..+...+....+++
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 9999987654444433444444444443
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0045 Score=62.58 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEE---eCCHHhhcCCC
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~--~l~~~g~~~~~~~~~~l~~~i~a---~~~~~ea~~~a 200 (460)
..||+|||+ |.+|+.+|..|+..+...++.++|+++...+ .+.... ....+.. .+|..++++++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~----------~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHIN----------TPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCC----------cCceEEEEeCCCCHHHHcCCC
Confidence 469999999 9999999999997775458999998762111 111100 0112332 23456778999
Q ss_pred cEEEEccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 201 DYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 201 DiVilaVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|+||++.-. . .+.++++.+.++- ++.+++..+|-++
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD 139 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVN 139 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence 999996531 1 1223334444443 6778888888655
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0034 Score=62.34 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=54.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe---CCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~---~~~~ea~~~aDiV 203 (460)
.+++.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.-.. . ..+... ++..+.+.++|+|
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~-~--------~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQ-V--------GVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhh-c--------CcceeccchhhhhhcccCCCEE
Confidence 4789999999999999999999883 4799999999998888764210 0 001111 1233455789999
Q ss_pred EEccchh
Q 012596 204 LHAMPVQ 210 (460)
Q Consensus 204 ilaVp~~ 210 (460)
|-|+|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999964
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0041 Score=57.26 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 68999999999999999999994 3699999886
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0049 Score=61.70 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=60.8
Q ss_pred EECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch--
Q 012596 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-- 209 (460)
Q Consensus 132 IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-- 209 (460)
|||+|.+|..+|..|+..+.-.++.++|++.++++.....-..... .++.++.+..+..+.+++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS----FLPTPKKIRSGDYSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc----ccCCCeEEecCCHHHHCCCCEEEECCCCCC
Confidence 6999999999999999887545799999987654433221000000 0112233333333558999999997532
Q ss_pred --h------------cHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 210 --Q------------FSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 210 --~------------~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
. .+.++.+.|.++ .++.+++..+|-
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 133444556554 466778877763
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.002 Score=61.22 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..+|+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 45799999999999999999999995 4699999883
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0059 Score=49.27 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=29.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR 160 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r 160 (460)
..++++|+|+|.+|..++..|.+.+ ..+|++|+|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 3579999999999999999999984 268888876
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=59.09 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=86.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVi 204 (460)
|+||+|+| .|.-|.-+.+.|+.+. +.++..+..+...-+.+.+.+.+.....+ ++ +.. -+.++. ..+||+||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp-~ve~~~~ss~~~~g~~~~~~~p~l~g~~~--l~--~~~-~~~~~~~~~~~DvvF 75 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHP-DVELILISSRERAGKPVSDVHPNLRGLVD--LP--FQT-IDPEKIELDECDVVF 75 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCC-CeEEEEeechhhcCCchHHhCcccccccc--cc--ccc-CChhhhhcccCCEEE
Confidence 68999999 6999999999999764 35666666554333344443333221111 11 111 133332 45699999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC-----CEEEEECcccHHHHhccCCeEE
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-----PFIALSGPSFALELMNKLPTAM 279 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~-----~~~v~~gP~~a~e~~~g~~~~i 279 (460)
+|+|.....+++.++.. .+..||+++.-.-.... +.-++..|.... .-.+.+=|..-.+-.++..-.-
T Consensus 76 lalPhg~s~~~v~~l~~---~g~~VIDLSadfR~~d~----~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIA 148 (349)
T COG0002 76 LALPHGVSAELVPELLE---AGCKVIDLSADFRLKDP----EVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIA 148 (349)
T ss_pred EecCchhHHHHHHHHHh---CCCeEEECCcccccCCH----HHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEee
Confidence 99999887777666543 46669999864433211 122222232110 1122223443332222221111
Q ss_pred EEccCCHHHHHHHHHHHhc
Q 012596 280 VVASKDRKLANAVQQLLAS 298 (460)
Q Consensus 280 ~i~~~d~~~~~~l~~lL~~ 298 (460)
..|+-.+...-.+.++++.
T Consensus 149 nPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 149 NPGCYPTAAILALAPLVKA 167 (349)
T ss_pred CCCchHHHHHHHHHHHHHc
Confidence 2445566777788899886
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0061 Score=66.35 Aligned_cols=93 Identities=12% Similarity=0.269 Sum_probs=64.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hh-hcCCCcEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~aDiV 203 (460)
-+|.|+|+|.+|..+++.|.+.| ++|+++|.|+++++.+++.|.+..+ .|. ++. ++ -++++|.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~~g~~~i~-GD~---------~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRERGIRAVL-GNA---------ANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHCCCeEEE-cCC---------CCHHHHHhcCccccCEE
Confidence 57999999999999999999999 9999999999999998876542111 110 122 11 14689999
Q ss_pred EEccchhcHH-HHHHHhhhcCCCCCeEEEec
Q 012596 204 LHAMPVQFSS-SFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp~~~~~-~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++++++... .++..+.... ++..++.-.
T Consensus 486 iv~~~~~~~~~~iv~~~~~~~-~~~~iiar~ 515 (558)
T PRK10669 486 LLTIPNGYEAGEIVASAREKR-PDIEIIARA 515 (558)
T ss_pred EEEcCChHHHHHHHHHHHHHC-CCCeEEEEE
Confidence 9999876533 3444444433 444555443
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.007 Score=66.47 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=66.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH---h-hcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK---T-ALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~---e-a~~~aDi 202 (460)
.++|.|+|.|.+|..+++.|.+.| ++++++|.|+++++.+++.|... +++|. ++++ + -+++||.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDa---------t~~~~L~~agi~~A~~ 467 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK--MRITVLERDISAVNLMRKYGYKV-YYGDA---------TQLELLRAAGAEKAEA 467 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhCCCeE-EEeeC---------CCHHHHHhcCCccCCE
Confidence 468999999999999999999998 89999999999999988766432 22211 1221 1 1468999
Q ss_pred EEEccchhcHH-HHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSS-SFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~-~vl~~i~~~l~~~~iIV~~~ 233 (460)
++++++++... .++..+++.. |+..|+.-.
T Consensus 468 vv~~~~d~~~n~~i~~~~r~~~-p~~~IiaRa 498 (601)
T PRK03659 468 IVITCNEPEDTMKIVELCQQHF-PHLHILARA 498 (601)
T ss_pred EEEEeCCHHHHHHHHHHHHHHC-CCCeEEEEe
Confidence 99999987544 4444445443 454555433
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0042 Score=66.25 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=53.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++++|+|+|.+|.+++..|++.| .+|++++|+.++++.+.+.. +.. .....+..+ +.++|+||.
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G--~~V~i~~R~~~~~~~la~~~-~~~----------~~~~~~~~~-l~~~DiVIn 396 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAG--AELLIFNRTKAHAEALASRC-QGK----------AFPLESLPE-LHRIDIIIN 396 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh-ccc----------eechhHhcc-cCCCCEEEE
Confidence 3578999999999999999999999 89999999998887776531 100 000112222 468999999
Q ss_pred ccchhc
Q 012596 206 AMPVQF 211 (460)
Q Consensus 206 aVp~~~ 211 (460)
|+|...
T Consensus 397 atP~g~ 402 (477)
T PRK09310 397 CLPPSV 402 (477)
T ss_pred cCCCCC
Confidence 999653
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.1 Score=52.10 Aligned_cols=229 Identities=15% Similarity=0.175 Sum_probs=132.2
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC--CCccCCCC-----CCCCceE---EeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC--NCRYFPEQ-----KLPENVI---ATTDA 193 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~--~~~~~~~~-----~l~~~i~---a~~~~ 193 (460)
|+.|.++.++|+|...--+|.-|...| +..+-+++|...+-+++.+.-. ...++.+. .+..++. ...++
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~ 79 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDL 79 (431)
T ss_pred CCcccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhH
Confidence 345789999999999999999999988 3678888876544444433210 01122111 0111121 23578
Q ss_pred HhhcCCCcEEEEccchhcHHHHHHHhh-hcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEE---------
Q 012596 194 KTALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS--------- 263 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~~~~vl~~i~-~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~--------- 263 (460)
+++..+.+-+|+|||+++..+++++|- +.++.-+.+|.++..++.. ..+...+. .+|. .+.|++
T Consensus 80 a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn--~lv~~~mn-k~~~---daeViS~SsY~~dTk 153 (431)
T COG4408 80 AQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSN--LLVQNLMN-KAGR---DAEVISLSSYYADTK 153 (431)
T ss_pred HHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEeccccccc--HHHHHHHh-hhCC---CceEEEeehhcccce
Confidence 888889999999999999999999873 4444333444444445433 12222332 2342 222221
Q ss_pred -----CcccHHHHhccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHH--------HHHHHHHHHHH
Q 012596 264 -----GPSFALELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA--------LKNVLAIAAGI 328 (460)
Q Consensus 264 -----gP~~a~e~~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ka--------lkNv~ai~~g~ 328 (460)
-|.++-.- +....+-+|+ ++...++.+..+|...|+.+...+.....|-... +.|-.++. .+
T Consensus 154 ~id~~~p~~alTk--avKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~-ai 230 (431)
T COG4408 154 YIDAEQPNRALTK--AVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQ-AI 230 (431)
T ss_pred eecccCcchHHHH--HHhHheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHH-HH
Confidence 13332211 1111234554 3567789999999999999998887666553221 12222221 11
Q ss_pred Hhcc-------cC-----CCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 329 VVGM-------NL-----GNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 329 ~~~~-------kl-----~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
-... |+ ....+..-++..-.|+.++..++|+.+-
T Consensus 231 f~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~i 276 (431)
T COG4408 231 FYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEI 276 (431)
T ss_pred hCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 1111 11 1234455567777999999999998743
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0049 Score=62.68 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=60.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+|||+|+| .|..|..+.+.|++.++. .++..+.+.++.-+.+.- .+ ..+...+...+.++++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~--------~g----~~i~v~d~~~~~~~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF--------KG----KELKVEDLTTFDFSGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee--------CC----ceeEEeeCCHHHHcCCCEEE
Confidence 47999999 799999999999997731 245777665432222211 11 11222221122357899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+|.....++...+.+ .|..||+++.
T Consensus 69 ~A~g~g~s~~~~~~~~~---~G~~VIDlS~ 95 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAA---AGAVVIDNSS 95 (334)
T ss_pred ECCChHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999887777665533 5778998875
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0067 Score=58.25 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=31.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|+|+|.+|+.+|..|++.|. .+++++|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 35799999999999999999999995 4788887664
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0037 Score=57.40 Aligned_cols=70 Identities=16% Similarity=0.294 Sum_probs=47.7
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+||| .|..|+.+..-..++| |+|+.+.|++.+.... ++.... ...+.--+...+.+.+.|+||.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG--HeVTAivRn~~K~~~~--~~~~i~-------q~Difd~~~~a~~l~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG--HEVTAIVRNASKLAAR--QGVTIL-------QKDIFDLTSLASDLAGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC--CeeEEEEeChHhcccc--ccceee-------cccccChhhhHhhhcCCceEEEe
Confidence 7999999 6999999999999999 9999999999766432 221110 00011001223456778888877
Q ss_pred cc
Q 012596 207 MP 208 (460)
Q Consensus 207 Vp 208 (460)
.-
T Consensus 70 ~~ 71 (211)
T COG2910 70 FG 71 (211)
T ss_pred cc
Confidence 64
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0087 Score=51.31 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=54.1
Q ss_pred CeEEEEC----cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 128 NKVVVLG----GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIG----aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
++|+||| .|.+|..+...|.++| ++|+.++.....+ .++....++.|.-...|++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G--~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDla 59 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG--YEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLA 59 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC--CEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEE
Confidence 4799999 7999999999999988 8999887654211 1345566777733789999
Q ss_pred EEccchhcHHHHHHHhhhc
Q 012596 204 LHAMPVQFSSSFLEGISDY 222 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~ 222 (460)
++++|...+.++++++...
T Consensus 60 vv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 60 VVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp EE-S-HHHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHHc
Confidence 9999999999999988764
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.005 Score=64.74 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=64.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc--------CCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~--------G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (460)
+++||+|+|+|.||..++..|.++ |.+.+|. +++|+.++.+ +.. . ....+++|.++.
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~-----~~~--------~-~~~~~~~d~~~l 67 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR-----GVD--------L-PGILLTTDPEEL 67 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc-----CCC--------C-cccceeCCHHHH
Confidence 458999999999999999988654 2124443 6788865432 110 0 113456788887
Q ss_pred cC--CCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 197 LL--GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 197 ~~--~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
+. +.|+|+.+++... ..+. +...++.|.-+|+..+.........+.+..+
T Consensus 68 l~d~~iDvVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~ 120 (426)
T PRK06349 68 VNDPDIDIVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAE 120 (426)
T ss_pred hhCCCCCEEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHH
Confidence 75 4799999987532 2222 3344556777776655443332333434433
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.016 Score=59.20 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=59.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhc--------CCCCeEE-EEeCC----------HHHHHHHHhhcCCCccCCCCCCCCce
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRD----------PAVCQSINEKHCNCRYFPEQKLPENV 187 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~--------G~~~~V~-v~~r~----------~~~~~~l~~~g~~~~~~~~~~l~~~i 187 (460)
.+||+|+|+|.||..++..|.+. |.+.+|+ ++|++ .+.+....+.......+ + ..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~-----~-~~ 75 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADY-----P-EG 75 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccC-----c-cc
Confidence 47999999999999999999765 3225555 55653 22333332221111101 0 01
Q ss_pred EEeCCHHhhc--CCCcEEEEccchhcH--HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 188 IATTDAKTAL--LGADYCLHAMPVQFS--SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 188 ~a~~~~~ea~--~~aDiVilaVp~~~~--~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
..+.+.++++ .+.|+|+.|+|+... +...+.+...+..|..||+..++.
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~p 128 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGP 128 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHH
Confidence 1234677766 368999999997432 222233344555677777765543
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0026 Score=58.14 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=64.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCC----------C-ceEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLP----------E-NVIATTDAK 194 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~-~~~l~----------~-~i~a~~~~~ 194 (460)
..||.|+|+|+.|..-+..|..-| .+|+.++..++..+.+...+....... ..... . .......+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 479999999999999999999988 999999999988777766543211110 00000 0 000112345
Q ss_pred hhcCCCcEEEEccc--hhcHHHHH-HHhhhcCCCCCeEEEec
Q 012596 195 TALLGADYCLHAMP--VQFSSSFL-EGISDYVDPGLPFISLS 233 (460)
Q Consensus 195 ea~~~aDiVilaVp--~~~~~~vl-~~i~~~l~~~~iIV~~~ 233 (460)
+.++.+|+||.+.- ......++ ++..+.++++.+|++++
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 56778999998654 32233322 34445567899999986
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0036 Score=67.90 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+..||.|+|+|.+|+..|..|++.|. .+++++|.+
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GV-g~ItlVD~D 371 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGV-RHITFVDNG 371 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCC
Confidence 35799999999999999999999996 367788754
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.032 Score=52.73 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||.|.+|..-+..|.+.| .+|++++.+.. .++.+.+.| +.....+ .-... .+.++|+||.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~~~-~i~~~~~---------~~~~~-dl~~~~lVi~ 75 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAEQG-GITWLAR---------CFDAD-ILEGAFLVIA 75 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHHcC-CEEEEeC---------CCCHH-HhCCcEEEEE
Confidence 579999999999999999999999 89999987653 445555543 1111000 00222 3678999999
Q ss_pred ccchhcHHH
Q 012596 206 AMPVQFSSS 214 (460)
Q Consensus 206 aVp~~~~~~ 214 (460)
++....+..
T Consensus 76 at~d~~ln~ 84 (205)
T TIGR01470 76 ATDDEELNR 84 (205)
T ss_pred CCCCHHHHH
Confidence 988764433
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.013 Score=56.17 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCC----HHHH-------HHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRD----PAVC-------QSINEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~--~V~v~~r~----~~~~-------~~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
.+||.|+|+|.+|..++..|.+.|. . +|+++||+ .++. +.+.+.. + . ... ..++
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~-----~----~~~--~~~l 91 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKET-N-----P----EKT--GGTL 91 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHh-c-----c----Ccc--cCCH
Confidence 4799999999999999999999883 3 69999998 3332 2222210 0 0 001 1256
Q ss_pred HhhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEecc
Q 012596 194 KTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
.++++++|++|-+++... .+++++.+ .++.+++.++|
T Consensus 92 ~~~l~~~dvlIgaT~~G~~~~~~l~~m----~~~~ivf~lsn 129 (226)
T cd05311 92 KEALKGADVFIGVSRPGVVKKEMIKKM----AKDPIVFALAN 129 (226)
T ss_pred HHHHhcCCEEEeCCCCCCCCHHHHHhh----CCCCEEEEeCC
Confidence 567788999999997332 23444333 35667777775
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0063 Score=60.24 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=57.9
Q ss_pred CCCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~m-G~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||.|.+ |.+++..|.+.| ..|+++.... .++.+.++.+|+||
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~--atVt~~hs~t----------------------------~~l~~~~~~ADIVV 206 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAG--ATVTICHSKT----------------------------RDLAAHTRQADIVV 206 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEecCCC----------------------------CCHHHHhhhCCEEE
Confidence 3689999999998 999999999988 8999875321 25667789999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++.... +. ..++++|+++|++.
T Consensus 207 ~avG~~~~---i~--~~~ik~gavVIDVG 230 (285)
T PRK14189 207 AAVGKRNV---LT--ADMVKPGATVIDVG 230 (285)
T ss_pred EcCCCcCc---cC--HHHcCCCCEEEEcc
Confidence 99995442 21 26678999999875
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.01 Score=60.06 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCCHHH--HHHHHhhcCCCccCCCC--CCCCceEEeCCHHhhcC
Q 012596 129 KVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDPAV--CQSINEKHCNCRYFPEQ--KLPENVIATTDAKTALL 198 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~G~~-----~~V~v~~r~~~~--~~~l~~~g~~~~~~~~~--~l~~~i~a~~~~~ea~~ 198 (460)
||+|||+ |.+|+.+|..|+..+.- .++.++|+++.. ++.... .+.+. .+...+..+++..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~------Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM------ELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe------ehhcccchhcCceeccCChHHHhC
Confidence 6999999 99999999999976631 159999986432 211100 00000 01112333334445689
Q ss_pred CCcEEEEccch----hc------------HHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 199 GADYCLHAMPV----QF------------SSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 199 ~aDiVilaVp~----~~------------~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+||+||++--. .. ++++.+.|.++..++.++|..+|-++
T Consensus 75 ~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD 129 (324)
T TIGR01758 75 DVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN 129 (324)
T ss_pred CCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 99999986532 11 33444556665446677777777443
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0057 Score=61.44 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=50.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||.|.| .|.+|+.++..|.++| ++|++.+|+.+....+...+..... .+ +.-.++..++++++|+||.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~~~~~l~~~~v~~v~-~D------l~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLRKASFLKEWGAELVY-GD------LSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChHHhhhHhhcCCEEEE-CC------CCCHHHHHHHHCCCCEEEEC
Confidence 6899999 5999999999999999 9999999987655444333321100 01 11112356678899999987
Q ss_pred cc
Q 012596 207 MP 208 (460)
Q Consensus 207 Vp 208 (460)
+.
T Consensus 72 ~~ 73 (317)
T CHL00194 72 ST 73 (317)
T ss_pred CC
Confidence 65
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.029 Score=54.47 Aligned_cols=145 Identities=20% Similarity=0.224 Sum_probs=85.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHh-hcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINE-KHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~--~~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+|||+|.|+ |+||..+.+.+.+.. +.++. .++|..... ....+ .|.. +..+.+++++.....++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~-~~~L~aa~~~~~~~~~g~d~ge~~g~~---------~~gv~v~~~~~~~~~~~D 71 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP-DLELVAAFDRPGSLSLGSDAGELAGLG---------LLGVPVTDDLLLVKADAD 71 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC-CceEEEEEecCCccccccchhhhcccc---------ccCceeecchhhcccCCC
Confidence 689999998 999999999999875 35544 567765311 00000 0110 113445566777778999
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
++|=.+-...+.+.++...+ .+..+|.-++|+..+..+.+.+..++ +.++.+|++.--+. +
T Consensus 72 V~IDFT~P~~~~~~l~~~~~---~~~~lVIGTTGf~~e~~~~l~~~a~~--------v~vv~a~NfSiGvn--------l 132 (266)
T COG0289 72 VLIDFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQLEKLREAAEK--------VPVVIAPNFSLGVN--------L 132 (266)
T ss_pred EEEECCCchhhHHHHHHHHH---cCCCeEEECCCCCHHHHHHHHHHHhh--------CCEEEeccchHHHH--------H
Confidence 99965544544444433332 35566777889998764444444332 24667777654210 0
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEE
Q 012596 282 ASKDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
-....++..++|. ++.++.
T Consensus 133 ---l~~l~~~aak~l~--~~DiEI 151 (266)
T COG0289 133 ---LFKLAEQAAKVLD--DYDIEI 151 (266)
T ss_pred ---HHHHHHHHHHhcC--CCCEEe
Confidence 1245677777777 455543
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=61.77 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=68.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC--CC-CCCc-eE-EeCCH--------
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE--QK-LPEN-VI-ATTDA-------- 193 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~--~~-l~~~-i~-a~~~~-------- 193 (460)
..||.|+|+|.+|...+..+...| .+|+++|+++++.+...+.|......+. .. .... ++ .+.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 579999999999999988888888 7899999999988888877653111100 00 0000 00 11111
Q ss_pred HhhcCCCcEEEEccchhc--HHHH-HHHhhhcCCCCCeEEEec
Q 012596 194 KTALLGADYCLHAMPVQF--SSSF-LEGISDYVDPGLPFISLS 233 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~--~~~v-l~~i~~~l~~~~iIV~~~ 233 (460)
.+.++++|+||.|+-... ...+ .++..+.++++..|+++.
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122357999999986432 2233 366667788899888875
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0099 Score=59.02 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=55.7
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||.|. +|.+++..|.+.| ..|++++|... ++.+.++++|+||
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~g--atVtv~~~~t~----------------------------~L~~~~~~aDIvI 207 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNAN--ATVTICHSRTQ----------------------------NLPELVKQADIIV 207 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC--CEEEEEeCCch----------------------------hHHHHhccCCEEE
Confidence 457999999998 9999999999988 79999987321 3445568999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++... .+. .+.++++++++++.
T Consensus 208 ~AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 208 GAVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred EccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 9996322 111 24577899998874
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0089 Score=57.59 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=35.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+..||.|+|+|.+|+.++..|++.|. .+++++|.+.-....++
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~ 68 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQTPELSNLN 68 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCccChhhhc
Confidence 35789999999999999999999996 47999998764444443
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=64.69 Aligned_cols=92 Identities=18% Similarity=0.338 Sum_probs=65.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH----hhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK----TALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~----ea~~~aDi 202 (460)
..+|.|+|.|.+|..+++.|.++| .+++++|.|+++++.+++.|... +++|. ++++ .-++++|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDa---------t~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRKFGMKV-FYGDA---------TRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhcCCeE-EEEeC---------CCHHHHHhcCCCcCCE
Confidence 468999999999999999999998 89999999999999998876432 22221 1221 12458999
Q ss_pred EEEccchhcHH-HHHHHhhhcCCCCCeEEE
Q 012596 203 CLHAMPVQFSS-SFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 203 VilaVp~~~~~-~vl~~i~~~l~~~~iIV~ 231 (460)
+++++.++... .++..++++. |+..++.
T Consensus 468 vvv~~~d~~~n~~i~~~ar~~~-p~~~iia 496 (621)
T PRK03562 468 LINAIDDPQTSLQLVELVKEHF-PHLQIIA 496 (621)
T ss_pred EEEEeCCHHHHHHHHHHHHHhC-CCCeEEE
Confidence 99999976543 3444444443 4444444
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=60.20 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=62.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..++|.|+|+ |.||+.+++.|++. |. .++++++|+.++++.+.++.... .+ .+..+++.++|+|
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv-~~lilv~R~~~rl~~La~el~~~------------~i-~~l~~~l~~aDiV 219 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGV-AELLLVARQQERLQELQAELGGG------------KI-LSLEEALPEADIV 219 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCC-CEEEEEcCCHHHHHHHHHHhccc------------cH-HhHHHHHccCCEE
Confidence 3579999999 89999999999854 42 58999999988777776532100 01 2566788899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+.++...... ++. ...++++.+++++.
T Consensus 220 v~~ts~~~~~-~I~--~~~l~~~~~viDiA 246 (340)
T PRK14982 220 VWVASMPKGV-EID--PETLKKPCLMIDGG 246 (340)
T ss_pred EECCcCCcCC-cCC--HHHhCCCeEEEEec
Confidence 9887653210 010 02235678888876
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0048 Score=61.01 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=67.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.-||+|||.|.+|+--|+...--| -+|++.|++.+++..+..... +..+ ...-...+++++..+|+||-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~~rv~~--------~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFGGRVHT--------LYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhCceeEE--------EEcCHHHHHHHhhhccEEEE
Confidence 368999999999999888887555 899999999887766554311 1000 00011356778899999997
Q ss_pred ccc--h-hcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMP--V-QFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp--~-~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|- - .+-.=+.+++.+.++||++||++.
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 763 2 222334566677789999999874
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0035 Score=58.08 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=48.0
Q ss_pred eEEEECcchHHHHH--HHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 129 KVVVLGGGSFGTAM--AAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 129 kI~IIGaG~mG~~~--A~~La~~G-~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
||+|||+|..-.+. -..+.... . ..++.++|.++++++.+.+.... +......+..+..++|.+++++++|+||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~--~~~~~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARR--MVEEAGADLKVEATTDRREALEGADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHH--HHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHH--HHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence 89999999876553 22333221 1 24799999999876643321100 0011112335788999999999999999
Q ss_pred Eccchh
Q 012596 205 HAMPVQ 210 (460)
Q Consensus 205 laVp~~ 210 (460)
.++-..
T Consensus 79 ~~irvG 84 (183)
T PF02056_consen 79 NQIRVG 84 (183)
T ss_dssp E---TT
T ss_pred EEeeec
Confidence 988654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.017 Score=58.97 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=52.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+..||+|||+ .||...+..+.+...+.+++ +++++.++++++.++. ++...+|.++++.+.|+++
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~-------------gi~~y~~~eell~d~Di~~ 67 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL-------------GVPLYCEVEELPDDIDIAC 67 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh-------------CCCccCCHHHHhcCCCEEE
Confidence 3579999999 68999999888753125655 7899999888887742 1224468999888889998
Q ss_pred Eccch
Q 012596 205 HAMPV 209 (460)
Q Consensus 205 laVp~ 209 (460)
+++|+
T Consensus 68 V~ipt 72 (343)
T TIGR01761 68 VVVRS 72 (343)
T ss_pred EEeCC
Confidence 88864
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=51.39 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 68999999999999999999994 3799998774
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0069 Score=60.22 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=27.7
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
||.|+|+|.+|+.+|..|++.|. .+++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence 68999999999999999999996 367777754
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0094 Score=60.59 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=61.2
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCC
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGA 200 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~a 200 (460)
|++.+||+|||+ |..|.-+.+.|.+..+ ..++..+..... .|.... +.+. .+.+. ++++. ..++
T Consensus 1 ~~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s-------aG~~~~-~~~~----~~~v~-~~~~~~~~~~ 67 (336)
T PRK08040 1 MSEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEES-------AGETLR-FGGK----SVTVQ-DAAEFDWSQA 67 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc-------CCceEE-ECCc----ceEEE-eCchhhccCC
Confidence 345689999996 9999999999998432 246666654432 122211 1111 23332 23232 3689
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|++|+|+|.....++...+.+ .|..+|+++.
T Consensus 68 Dvvf~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 98 (336)
T PRK08040 68 QLAFFVAGREASAAYAEEATN---AGCLVIDSSG 98 (336)
T ss_pred CEEEECCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 999999998877666665533 5788999875
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.011 Score=62.01 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=33.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
+.++|.|||.|.+|.++|..|.+.| ++|+++|+++..
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G--~~V~g~D~~~~~ 38 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKG--VYVIGVDKSLEA 38 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCC--CEEEEEeCCccc
Confidence 4578999999999999999999999 899999987653
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0079 Score=57.13 Aligned_cols=97 Identities=12% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCeEEEECcchHHHHHHHHHH--hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La--~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (460)
..+|+|||+|.+|..++..+. ..| +++. ++|++++...... .+. .+...+++.+.++ ++|
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g--~~ivgv~D~d~~~~~~~i---------~g~----~v~~~~~l~~li~~~~iD 148 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRG--FKIVAAFDVDPEKIGTKI---------GGI----PVYHIDELEEVVKENDIE 148 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCC--cEEEEEEECChhhcCCEe---------CCe----EEcCHHHHHHHHHHCCCC
Confidence 468999999999999998643 334 6766 6787764331100 010 0111235556554 499
Q ss_pred EEEEccchhcHHHHHHHhh-----hcCCCCCeEEEeccCCcc
Q 012596 202 YCLHAMPVQFSSSFLEGIS-----DYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~-----~~l~~~~iIV~~~~Gi~~ 238 (460)
.|++|+|.....++.+.+. ..+....+.+++..|+..
T Consensus 149 ~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v 190 (213)
T PRK05472 149 IGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIV 190 (213)
T ss_pred EEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEE
Confidence 9999999877666554433 223323344455555543
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=50.89 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=57.4
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|.|+| .+..|..++..|.+.| ..|++++++. .++++.++.||+|+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~g--atV~~~~~~t----------------------------~~l~~~v~~ADIVv 76 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDG--ATVYSCDWKT----------------------------IQLQSKVHDADVVV 76 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEE
Confidence 468999999 6678999999999988 8999887542 15667789999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ ++ .+++++|+++++..
T Consensus 77 sAtg~~~~---i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 77 VGSPKPEK---VP--TEWIKPGATVINCS 100 (140)
T ss_pred EecCCCCc---cC--HHHcCCCCEEEEcC
Confidence 99987643 11 35678999999765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.013 Score=59.70 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=32.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|||+|.+|+.+|..|+++|. .+++++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 35799999999999999999999994 3899999874
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.031 Score=57.21 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=60.6
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-HHhhcCCCccCCCCCC-CCceEEe-CCHHhhcCCCc
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-INEKHCNCRYFPEQKL-PENVIAT-TDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~-l~~~g~~~~~~~~~~l-~~~i~a~-~~~~ea~~~aD 201 (460)
+++||+|+| .|.+|..+...|.+.. ..+++++.+++....+ +........| .+..- ...+.+. .++++ +.++|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p-~~el~~~~~s~~~~G~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~D 78 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHP-WFEVTALAASERSAGKTYGEAVRWQLD-GPIPEEVADMEVVSTDPEA-VDDVD 78 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCC-CceEEEEEcChhhcCCccccccccccc-ccccccccceEEEeCCHHH-hcCCC
Confidence 358999998 8999999999999764 2578877555533211 1100000000 00000 0112222 24444 57899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+||.|+|......+.+.+.. .|..+|+++.
T Consensus 79 vVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 79 IVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred EEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 99999998766665554433 4677888774
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.017 Score=59.55 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=31.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..+|.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 35799999999999999999999995 4799999873
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.011 Score=62.21 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=49.3
Q ss_pred CeEEEECcchHHHH--HHHHHHhcC--C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGTA--MAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~--~A~~La~~G--~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|.. .. +...|.... . ..+|+++|.++++.+.+..... ++......+-.+..++|.++|+++||+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~--~~~~~~g~~~~v~~Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK--ILFKENYPEIKFVYTTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhhCCCeEEEEECCHHHHhCCCCE
Confidence 79999999985 21 222333221 1 2689999999987654332110 011111123357889999999999999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||.+.-
T Consensus 78 Vi~~ir 83 (437)
T cd05298 78 VFAQIR 83 (437)
T ss_pred EEEEee
Confidence 998764
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.027 Score=57.50 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=48.9
Q ss_pred CCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+.||||||+|.++.. .+..+.....+.+|. ++|++++.. +..+.. + .+.+.+|.+++++ +.|+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~------~------~~~~~~~~~ell~~~~iD~ 67 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIY------S------HIHFTSDLDEVLNDPDVKL 67 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhc------C------CCcccCCHHHHhcCCCCCE
Confidence 468999999997753 344443321125665 788887543 333221 0 1234568888885 5799
Q ss_pred EEEccchhcHHHHHHH
Q 012596 203 CLHAMPVQFSSSFLEG 218 (460)
Q Consensus 203 VilaVp~~~~~~vl~~ 218 (460)
|++|+|.....++...
T Consensus 68 V~I~tp~~~H~~~~~~ 83 (344)
T PRK10206 68 VVVCTHADSHFEYAKR 83 (344)
T ss_pred EEEeCCchHHHHHHHH
Confidence 9999998765554433
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.014 Score=59.89 Aligned_cols=110 Identities=17% Similarity=0.295 Sum_probs=63.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cC-CCccCCC--C----------CCCCceE---
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HC-NCRYFPE--Q----------KLPENVI--- 188 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~-~~~~~~~--~----------~l~~~i~--- 188 (460)
+..||+|||+|..|+.++..|++.|. -+++++|.+.-....++.+ |. ....++. . .+...+.
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~ 253 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP 253 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence 35799999999999999999999996 4788888663211111111 00 0000000 0 0011121
Q ss_pred --EeCCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 189 --ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 189 --a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
+..+..+.+.++|+||.|+-....+.++...... .+..+|++..|+..
T Consensus 254 ~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~~ 303 (393)
T PRK06153 254 EYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLEL 303 (393)
T ss_pred ecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeeccee
Confidence 1112223467899999999887777766554432 25677777655543
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.019 Score=56.81 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=56.9
Q ss_pred CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||-|. +|.++|..|.+.| ..|+++.+.. .++.+.++.+|+||.
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAG--CTVTVCHRFT----------------------------KNLRHHVRNADLLVV 208 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC--CeEEEEECCC----------------------------CCHHHHHhhCCEEEE
Confidence 68999999999 9999999999888 8999987542 256677889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++..... + ...++++|+++|++.
T Consensus 209 avG~p~~---v--~~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---I--PGEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---c--cHHHcCCCcEEEEcc
Confidence 9953331 1 125678899999975
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.033 Score=56.79 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=57.8
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~-~r~~~~~~~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aDiVi 204 (460)
|||+|+|+ |.||..++..|.+.. ..+|+.+ ++..+..+.+.+......| .+..- ...+.+.+...+...++|+||
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~-~~~l~~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP-YFELAKVVASPRSAGKRYGEAVKWIEP-GDMPEYVRDLPIVEPEPVASKDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CceEEEEEEChhhcCCcchhhcccccc-CCCccccceeEEEeCCHHHhccCCEEE
Confidence 58999995 999999999998765 2577755 4443221212111000000 00000 011222221223457899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+|......+...+.. .|..+|+++.
T Consensus 79 ~a~p~~~s~~~~~~~~~---~G~~VIDlsg 105 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAE---AGKPVFSNAS 105 (341)
T ss_pred EeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 99998876666654433 4777888764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.032 Score=45.96 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=56.7
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La-~~G~~~~-V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi 202 (460)
..+|+|+|+|++|.+++..+. ..| +. +.++|.++++. |. .+ .++.+..+.+++.+. .|+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g--~~i~~~~dv~~~~~------G~--------~i-~gipV~~~~~~l~~~~~i~i 65 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRG--FGIVAVFDVDPEKI------GK--------EI-GGIPVYGSMDELEEFIEIDI 65 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHC--ECEEEEEEECTTTT------TS--------EE-TTEEEESSHHHHHHHCTTSE
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcC--CCCEEEEEcCCCcc------Cc--------EE-CCEEeeccHHHhhhhhCCCE
Confidence 468999999999999885444 334 55 45788887422 11 01 134555566665554 999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++||+....+++.++.+. .=..|++++
T Consensus 66 aii~VP~~~a~~~~~~~~~~--gIk~i~nft 94 (96)
T PF02629_consen 66 AIITVPAEAAQEVADELVEA--GIKGIVNFT 94 (96)
T ss_dssp EEEES-HHHHHHHHHHHHHT--T-SEEEEES
T ss_pred EEEEcCHHHHHHHHHHHHHc--CCCEEEEeC
Confidence 99999999888888776552 113455554
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.014 Score=61.19 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=49.1
Q ss_pred CeEEEECcchH-HHHHHHHHHhcC--C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 128 NKVVVLGGGSF-GTAMAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~m-G~~~A~~La~~G--~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|||+|||+|.. ..-+...|.... . ..+|.++|.++++.+.+.+... ++......+-.+..++|.++|+++||+|
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~--~~~~~~g~~~~v~~ttD~~~Al~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK--RYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 69999999983 212333333222 1 2689999999976654322110 0000111123577899999999999999
Q ss_pred EEccc
Q 012596 204 LHAMP 208 (460)
Q Consensus 204 ilaVp 208 (460)
|...-
T Consensus 79 i~~ir 83 (425)
T cd05197 79 INQFR 83 (425)
T ss_pred EEeee
Confidence 98773
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.023 Score=51.61 Aligned_cols=73 Identities=23% Similarity=0.331 Sum_probs=50.8
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||-+ .+|.+++..|.+.| ..|+++.... .++++.++.||+||
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~--atVt~~h~~T----------------------------~~l~~~~~~ADIVV 84 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKG--ATVTICHSKT----------------------------KNLQEITRRADIVV 84 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TTS----------------------------SSHHHHHTTSSEEE
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCC--CeEEeccCCC----------------------------CcccceeeeccEEe
Confidence 46899999987 59999999999998 8999876543 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++..... +. ...+++|+++|++.
T Consensus 85 sa~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 85 SAVGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp E-SSSTT----B---GGGS-TTEEEEE--
T ss_pred eeeccccc---cc--cccccCCcEEEecC
Confidence 99985443 11 35678899999875
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.017 Score=53.10 Aligned_cols=80 Identities=15% Similarity=0.315 Sum_probs=52.9
Q ss_pred CCCeEEEECcchHHHHHHHHH-H-hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHV-A-NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~L-a-~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
++.++.|||+|++|.+++..- . ++| .+++ ++|.+++.+ |.... + + .+.--++++..++ +.
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~--~~iv~~FDv~~~~V------G~~~~---~--v--~V~~~d~le~~v~~~dv 147 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNG--MKIVAAFDVDPDKV------GTKIG---D--V--PVYDLDDLEKFVKKNDV 147 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcC--ceEEEEecCCHHHh------CcccC---C--e--eeechHHHHHHHHhcCc
Confidence 467999999999999998754 2 455 6655 889888633 21111 1 1 1222345555555 78
Q ss_pred cEEEEccchhcHHHHHHHhh
Q 012596 201 DYCLHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~ 220 (460)
|+.|+|||+..-.++.+.+.
T Consensus 148 ~iaiLtVPa~~AQ~vad~Lv 167 (211)
T COG2344 148 EIAILTVPAEHAQEVADRLV 167 (211)
T ss_pred cEEEEEccHHHHHHHHHHHH
Confidence 99999999877777666653
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.038 Score=46.17 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=55.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+..+|.|||.|.+|..=+..|.+.| .+|++++.+.+..+ .... . .....++.+.++|+|++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~~~~~~----~~i~------------~-~~~~~~~~l~~~~lV~~ 66 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG--AKVTVISPEIEFSE----GLIQ------------L-IRREFEEDLDGADLVFA 66 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESSEHHHH----TSCE------------E-EESS-GGGCTTESEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCchhhhh----hHHH------------H-HhhhHHHHHhhheEEEe
Confidence 4579999999999999999999999 99999999851111 1110 0 11223345788999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++....+.+.+...... ..++++..
T Consensus 67 at~d~~~n~~i~~~a~~---~~i~vn~~ 91 (103)
T PF13241_consen 67 ATDDPELNEAIYADARA---RGILVNVV 91 (103)
T ss_dssp -SS-HHHHHHHHHHHHH---TTSEEEET
T ss_pred cCCCHHHHHHHHHHHhh---CCEEEEEC
Confidence 99887766544443332 23555543
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.059 Score=57.10 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=65.8
Q ss_pred CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
..++|+|||+ |.+|..+..+|.+.|+.-+|+.++...+.+ .++.+..+++++-+..|
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~~~D 66 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPDPVD 66 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCCCCC
Confidence 4578999999 889999999999988323677666543211 02334457777666789
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
++++++|...+.+++++..+. .- ..+|.++.|+..
T Consensus 67 lavi~vp~~~~~~~l~e~~~~-gv-~~~vi~s~gf~e 101 (447)
T TIGR02717 67 LAVIVVPAKYVPQVVEECGEK-GV-KGAVVITAGFKE 101 (447)
T ss_pred EEEEecCHHHHHHHHHHHHhc-CC-CEEEEECCCccc
Confidence 999999999999998887653 22 244556777754
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.065 Score=54.31 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=57.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhc-CCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTAL-LGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~-~~aDiVi 204 (460)
..+|+|+|+|.+|..-.......| .+|+.++|++++.+..++.|....+ ... .+..+.+ +.+|+||
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i----------~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVI----------NSSDSDALEAVKEIADAII 234 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCcEEE----------EcCCchhhHHhHhhCcEEE
Confidence 579999999988885444444467 8999999999999888887753111 111 1222222 2399999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.+++...+...++.+ +++-.++.+
T Consensus 235 ~tv~~~~~~~~l~~l----~~~G~~v~v 258 (339)
T COG1064 235 DTVGPATLEPSLKAL----RRGGTLVLV 258 (339)
T ss_pred ECCChhhHHHHHHHH----hcCCEEEEE
Confidence 999944455554443 344444443
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.027 Score=55.86 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+..||.|||+|.+|+.++..|+++|. ..++++|.+.-
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCCc
Confidence 45799999999999999999999996 47888987753
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.03 Score=52.62 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 4799999999999999999999996 5799999875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.013 Score=56.81 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+..||.|+|+|.+|+.++..|++.|. .+++++|.+.-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCcc
Confidence 35799999999999999999999996 47889988754
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.021 Score=59.04 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+..||.|+|+|.+|+.++..|++.|. -+++++|++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 45799999999999999999999995 379999988
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.021 Score=59.87 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=49.3
Q ss_pred CeEEEECcchHHH-HHHHHHHhcC--C-CCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGT-AMAAHVANKK--S-QLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~-~~A~~La~~G--~-~~~V~v~~r~-~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|..-+ .+...|+... . ..+|.++|.+ +++++.+..... ++......+..+..++|.+++++++|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~--~~~~~~~~~~~v~~t~d~~~al~gadf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK--RMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 7999999999643 2333344321 1 2689999999 776544322110 000011112357788999999999999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||++.-
T Consensus 79 Vi~~~~ 84 (419)
T cd05296 79 VFTQIR 84 (419)
T ss_pred EEEEEe
Confidence 998763
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.037 Score=58.34 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=47.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHH----HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVC----QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-~~~----~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
+.++|.|+|+|.+|.++|..|++.| ++|++++++. +.+ +++.+.|.. +...+...+...++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~ 69 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGELGIE------------LVLGEYPEEFLEGV 69 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCE------------EEeCCcchhHhhcC
Confidence 3579999999999999999999999 9999999975 223 223222321 11112223345679
Q ss_pred cEEEEccc
Q 012596 201 DYCLHAMP 208 (460)
Q Consensus 201 DiVilaVp 208 (460)
|+||.+.-
T Consensus 70 d~vv~~~g 77 (450)
T PRK14106 70 DLVVVSPG 77 (450)
T ss_pred CEEEECCC
Confidence 99999765
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.028 Score=57.40 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=57.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiV 203 (460)
.+||+|+| .|..|..+.+.|.+.++ ..++.++...... |....+ .+. .+.+.+ +. +.+.++|+|
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsa-------Gk~~~~-~~~----~~~v~~~~~-~~~~~~D~v 73 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSA-------GKKVTF-EGR----DYTVEELTE-DSFDGVDIA 73 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCC-------CCeeee-cCc----eeEEEeCCH-HHHcCCCEE
Confidence 58999999 69999999999998762 1245444433211 111110 111 122222 33 345789999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+|+|.....++...+.+ .|..||+++.
T Consensus 74 f~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 101 (344)
T PLN02383 74 LFSAGGSISKKFGPIAVD---KGAVVVDNSS 101 (344)
T ss_pred EECCCcHHHHHHHHHHHh---CCCEEEECCc
Confidence 999998877776665433 5788999885
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.026 Score=56.27 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=48.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCH---HHHHHHHhhcCCCccCCCCCCC-CceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDP---AVCQSINEKHCNCRYFPEQKLP-ENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~-V~v~~r~~---~~~~~l~~~g~~~~~~~~~~l~-~~i~a~~~~~ea~~~aD 201 (460)
.+++.|+|+|.+|.+++..|++.| .+ |++++|+. ++++++.+.- ...+ +..... ..+.-.++..+.++.+|
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G--~~~V~I~~R~~~~~~~a~~l~~~l-~~~~-~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDG--AKEITIFNIKDDFYERAEQTAEKI-KQEV-PECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCchHHHHHHHHHHHH-hhcC-CCceeEEechhhhhHHHhhhccCC
Confidence 468999999999999999999998 65 99999986 5555544321 0000 000000 00000012233456789
Q ss_pred EEEEccch
Q 012596 202 YCLHAMPV 209 (460)
Q Consensus 202 iVilaVp~ 209 (460)
+||-++|.
T Consensus 202 ilINaTp~ 209 (289)
T PRK12548 202 ILVNATLV 209 (289)
T ss_pred EEEEeCCC
Confidence 99999885
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.064 Score=53.44 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=50.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH---HHHHHHHhhcCCCccCCCCCCCCceEEeC-----CHHhhcC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP---AVCQSINEKHCNCRYFPEQKLPENVIATT-----DAKTALL 198 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~---~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-----~~~ea~~ 198 (460)
.+++.|||+|..+.+++..|+..|. .+|++++|++ ++++.+.+.- +..+ ...+...+ .+.+.+.
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~-~~~~------~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRV-NENT------DCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHh-hhcc------CceEEEechhhhhhhhhhcc
Confidence 4689999999999999999998883 4899999994 4666665531 1000 00111111 1223456
Q ss_pred CCcEEEEccch
Q 012596 199 GADYCLHAMPV 209 (460)
Q Consensus 199 ~aDiVilaVp~ 209 (460)
++|+||-++|.
T Consensus 196 ~aDivINaTp~ 206 (288)
T PRK12749 196 SADILTNGTKV 206 (288)
T ss_pred cCCEEEECCCC
Confidence 78999999985
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.036 Score=54.92 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=56.5
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||.| .+|.++|..|.+.| ..|+++.... .++.+.++.||+||
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~g--AtVtv~hs~t----------------------------~~l~~~~~~ADIvV 205 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAG--ASVSVCHILT----------------------------KDLSFYTQNADIVC 205 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC--CEEEEEeCCc----------------------------HHHHHHHHhCCEEE
Confidence 36899999999 99999999999988 8999885322 14556678999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 206 ~AvG~p~~---i--~~~~vk~GavVIDvG 229 (285)
T PRK14191 206 VGVGKPDL---I--KASMVKKGAVVVDIG 229 (285)
T ss_pred EecCCCCc---C--CHHHcCCCcEEEEee
Confidence 99975443 1 123567899999875
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.21 Score=47.81 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=54.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||.|.+|..=+..|.+.| .+|+++...-. .+..+.+.+. .... ... . +..+ +.++++||.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~~~-i~~~-----~r~---~-~~~d-l~g~~LVia 91 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKYGN-LKLI-----KGN---Y-DKEF-IKDKHLIVI 91 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhCCC-EEEE-----eCC---C-ChHH-hCCCcEEEE
Confidence 578999999999999999999998 89999987532 3444444331 1110 000 0 2333 578999999
Q ss_pred ccchhcHHHHHHHhh
Q 012596 206 AMPVQFSSSFLEGIS 220 (460)
Q Consensus 206 aVp~~~~~~vl~~i~ 220 (460)
|+....+..-+....
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999877766554443
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.031 Score=56.95 Aligned_cols=90 Identities=18% Similarity=0.311 Sum_probs=58.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHh-cCCCCe---EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCC
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVAN-KKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~-~G~~~~---V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~a 200 (460)
.+||||||+ |.+|.-|.+.|.+ .. .+ +.++..... .|.... +.+. .+.+. .+.++ +.++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~--f~v~~l~~~aS~~s-------aGk~~~-~~~~----~l~v~~~~~~~-~~~~ 69 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETK--FNIAEVTLLSSKRS-------AGKTVQ-FKGR----EIIIQEAKINS-FEGV 69 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCC--CCcccEEEEECccc-------CCCCee-eCCc----ceEEEeCCHHH-hcCC
Confidence 479999996 9999999999995 44 55 555654421 122211 1111 12222 24444 5789
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|++|+|+|.....++...+.+ .|..+|+++.
T Consensus 70 Divf~a~~~~~s~~~~~~~~~---~G~~VID~Ss 100 (347)
T PRK06728 70 DIAFFSAGGEVSRQFVNQAVS---SGAIVIDNTS 100 (347)
T ss_pred CEEEECCChHHHHHHHHHHHH---CCCEEEECch
Confidence 999999998877777665433 5789999875
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.024 Score=53.99 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=51.6
Q ss_pred EEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 130 I~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~--~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|+|+|+ |.+|..++..|.+.+ ++|+++.|+.. ..+.+.+.|..... .+ + .-.+++.++++++|.||++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~--~~V~~l~R~~~~~~~~~l~~~g~~vv~-~d--~----~~~~~l~~al~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG--FSVRALVRDPSSDRAQQLQALGAEVVE-AD--Y----DDPESLVAALKGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--GCEEEEESSSHHHHHHHHHHTTTEEEE-S---T----T-HHHHHHHHTTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCC--CCcEEEEeccchhhhhhhhcccceEee-cc--c----CCHHHHHHHHcCCceEEee
Confidence 789996 999999999999988 99999999864 45666666542110 00 0 0112456678999999999
Q ss_pred cch
Q 012596 207 MPV 209 (460)
Q Consensus 207 Vp~ 209 (460)
++.
T Consensus 72 ~~~ 74 (233)
T PF05368_consen 72 TPP 74 (233)
T ss_dssp SSC
T ss_pred cCc
Confidence 993
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.037 Score=53.77 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=31.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 35799999999999999999999996 4788888764
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.043 Score=54.42 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=63.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--eCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiVi 204 (460)
.+++.|+|+|-.+.+++..|++.|. .++++++|+.++++++.+....... .+.. ..+.+. ..++|+||
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~~--------~~~~~~~~~~~~-~~~~dliI 195 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELGA--------AVEAAALADLEG-LEEADLLI 195 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhccc--------cccccccccccc-ccccCEEE
Confidence 4789999999999999999999993 5799999999998888764221000 0111 112222 22689999
Q ss_pred EccchhcH----HHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFS----SSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~----~~vl~~i~~~l~~~~iIV~~~ 233 (460)
-++|..-. ...+. ...++++.++.++.
T Consensus 196 NaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 196 NATPVGMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred ECCCCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 99995321 11222 34566777887775
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.053 Score=50.90 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|+|+|.+|+.++..|+..|. ..++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 35799999999999999999999996 4799998764
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.23 Score=47.11 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||.|.+|..=+..|.+.| .+|+++.... .....+.+.+.- ... .-.-++++ +.++++||.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g--a~v~Vvs~~~~~el~~~~~~~~i-~~~---------~~~~~~~~-~~~~~lvia 78 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG--ADVTVVSPEFEPELKALIEEGKI-KWI---------EREFDAED-LDDAFLVIA 78 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC--CEEEEEcCCccHHHHHHHHhcCc-chh---------hcccChhh-hcCceEEEE
Confidence 579999999999999999999999 8999998775 455555554420 100 00113444 456999999
Q ss_pred ccchhcHHHHHHH
Q 012596 206 AMPVQFSSSFLEG 218 (460)
Q Consensus 206 aVp~~~~~~vl~~ 218 (460)
|+.+..+.+-+.+
T Consensus 79 At~d~~ln~~i~~ 91 (210)
T COG1648 79 ATDDEELNERIAK 91 (210)
T ss_pred eCCCHHHHHHHHH
Confidence 9998776554433
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.037 Score=56.77 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 35799999999999999999999996 4788998775
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.025 Score=58.88 Aligned_cols=81 Identities=27% Similarity=0.319 Sum_probs=50.6
Q ss_pred CCCeEEEECcchHHHHH--HHHHHhc-CC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGGGSFGTAM--AAHVANK-KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~--A~~La~~-G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+++||+|||+|+.+.+- ..-|.+. .. ..++.++|.++++.+.+...- .++....-.+-.+..++|.++|+++||
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~--~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILA--KKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHH--HHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 56899999999987652 2222221 11 268999999987655221100 001111112335778899999999999
Q ss_pred EEEEccc
Q 012596 202 YCLHAMP 208 (460)
Q Consensus 202 iVilaVp 208 (460)
+|+.+.-
T Consensus 80 fVi~~~r 86 (442)
T COG1486 80 FVITQIR 86 (442)
T ss_pred EEEEEEe
Confidence 9998874
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.067 Score=51.91 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=32.7
Q ss_pred hccCCCeEEEECcchHHHHHHHHHHhcCC-----C----CeEEEEeCCH
Q 012596 123 ILERTNKVVVLGGGSFGTAMAAHVANKKS-----Q----LKVYMLMRDP 162 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~~A~~La~~G~-----~----~~V~v~~r~~ 162 (460)
++.+..||.|||+|.+|+.++..|++.|. + .+++++|.+.
T Consensus 7 ~~~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 7 LLSRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred HHhCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 34567899999999999999999999741 1 3889999765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.038 Score=61.19 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+||+|||+|..|...|..|++.| ++|++|++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCC
Confidence 3689999999999999999999999 8999999875
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.029 Score=57.26 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=57.0
Q ss_pred eEEEEC-cchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEEEE
Q 012596 129 KVVVLG-GGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (460)
Q Consensus 129 kI~IIG-aG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil 205 (460)
||+|+| .|..|..+.+.|.++++. .++.++.+.+..-+.+.. .+. .+...+ +. +.+.++|+||+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~--------~~~----~~~~~~~~~-~~~~~~D~v~~ 67 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF--------KGK----ELEVNEAKI-ESFEGIDIALF 67 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee--------CCe----eEEEEeCCh-HHhcCCCEEEE
Confidence 689999 899999999999987721 234455555422111111 110 122221 23 33578999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|++.....++...+.+ .|..||+++.
T Consensus 68 a~g~~~s~~~a~~~~~---~G~~VID~ss 93 (339)
T TIGR01296 68 SAGGSVSKEFAPKAAK---CGAIVIDNTS 93 (339)
T ss_pred CCCHHHHHHHHHHHHH---CCCEEEECCH
Confidence 9999887777665533 5778898774
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.075 Score=45.18 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHHhcCC--CCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcEEEEc
Q 012596 134 GGGSFGTAMAAHVANKKS--QLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCLHA 206 (460)
Q Consensus 134 GaG~mG~~~A~~La~~G~--~~~V~-v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiVila 206 (460)
|+|.||..++..|.+... +.+|. +++|+ ... ....... ....+++.++.+. +.|+||-|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-------------DEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-------------HSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-------------cccccCCHHHHhcCcCCCEEEEC
Confidence 899999999999987630 14555 66777 100 0111100 1235568888877 89999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
..+..+.+.+... ++.|.-+|++++|...
T Consensus 67 t~~~~~~~~~~~~---L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 67 TSSEAVAEYYEKA---LERGKHVVTANKGALA 95 (117)
T ss_dssp SSCHHHHHHHHHH---HHTTCEEEES-HHHHH
T ss_pred CCchHHHHHHHHH---HHCCCeEEEECHHHhh
Confidence 8777766655444 4468889998887554
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.046 Score=52.82 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=34.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS 167 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~ 167 (460)
++|+|.|+|+ |.+|..++..|.+.| ++|+++.|+++....
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~ 56 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG--FAVKAGVRDVDKAKT 56 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC--CEEEEEecCHHHHHH
Confidence 3689999995 999999999999998 999999999876543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.033 Score=43.99 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=30.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
||.|||+|..|.-+|..|++.| .+|+++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccch
Confidence 6899999999999999999999 99999998763
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.046 Score=56.85 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=55.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCC----------CCCCceEE-----
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPENVIA----- 189 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~----------~l~~~i~a----- 189 (460)
+..||.|||+|.+|+.++..|++.|. .+++++|.+.-....+..+-. .....+.. .+.+.+.+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 35799999999999999999999996 378888876422222221100 00000000 01111111
Q ss_pred --e-CCHHhhcCCCcEEEEccchhcHHHHHHHhhh
Q 012596 190 --T-TDAKTALLGADYCLHAMPVQFSSSFLEGISD 221 (460)
Q Consensus 190 --~-~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~ 221 (460)
. .+..+.++++|+||.|+-....+..+.++..
T Consensus 120 ~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~ 154 (392)
T PRK07878 120 RLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAV 154 (392)
T ss_pred cCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHH
Confidence 1 1234567789999998877666666665543
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.057 Score=53.34 Aligned_cols=73 Identities=26% Similarity=0.320 Sum_probs=57.1
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.+ ..|.++|..|...| ..|+++.+... ++.+.++.||+||
T Consensus 151 ~Gk~V~ViGrs~~vGrpla~lL~~~~--atVtv~hs~t~----------------------------~L~~~~~~ADIvI 200 (279)
T PRK14178 151 AGKRAVVVGRSIDVGRPMAALLLNAD--ATVTICHSKTE----------------------------NLKAELRQADILV 200 (279)
T ss_pred CCCEEEEECCCccccHHHHHHHHhCC--CeeEEEecChh----------------------------HHHHHHhhCCEEE
Confidence 35899999999 99999999999888 89998876531 4666778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++...+ +. ..++++|+++|++.
T Consensus 201 ~Avgk~~l---v~--~~~vk~GavVIDVg 224 (279)
T PRK14178 201 SAAGKAGF---IT--PDMVKPGATVIDVG 224 (279)
T ss_pred ECCCcccc---cC--HHHcCCCcEEEEee
Confidence 99974322 11 23358899999975
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.022 Score=59.25 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=31.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+|.|||+|.+|.+.|..|+++| ++|+++++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 58999999999999999999999 8999999875
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.026 Score=49.41 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=30.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..||+|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 4689999999999999999999995 4799999875
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.1 Score=52.96 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=51.3
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHh-hcCCCcc-CCC--CCC-CCceEEeCCHHhhcCCCcEE
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINE-KHCNCRY-FPE--QKL-PENVIATTDAKTALLGADYC 203 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~-~g~~~~~-~~~--~~l-~~~i~a~~~~~ea~~~aDiV 203 (460)
|||+|.|.||...++.+.+.. +.+|+ +.|.+++....+.. .|....+ +++ ..+ ..++.+..++++++.++|+|
T Consensus 1 VaInG~GrIGr~varav~~~~-d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV 79 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD-DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV 79 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC-CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence 689999999999999987653 36766 44555654444443 2321111 111 011 12355566788888999999
Q ss_pred EEccchhc
Q 012596 204 LHAMPVQF 211 (460)
Q Consensus 204 ilaVp~~~ 211 (460)
+.|+|...
T Consensus 80 ve~Tp~~~ 87 (333)
T TIGR01546 80 VDATPGGI 87 (333)
T ss_pred EECCCCCC
Confidence 99999653
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.059 Score=53.16 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=51.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHH---hhcCCCcEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAK---TALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~---ea~~~aDiV 203 (460)
.||+|||.|.+-...-....+.|.+..|..+|++++..+..++--.. ...+...+.+ +.|.. .-+.++|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~-----~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVAS-----DLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh-----cccccCCeEEEecchhccccccccCCEE
Confidence 49999999999887655555544336788999999865433221000 0011122332 22332 225689999
Q ss_pred EEccchh----cHHHHHHHhhhcCCCCCeEEE
Q 012596 204 LHAMPVQ----FSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 204 ilaVp~~----~~~~vl~~i~~~l~~~~iIV~ 231 (460)
+++--.. .-.++++.+.+++++|+.|+-
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 9986654 678899999999999987664
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.089 Score=52.28 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=51.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiVi 204 (460)
.+++.|+|+|..|.+++..|++.|. .+|++++|+.++++++.+.- +..+ +.. .+...+ +..+.+..+|+||
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~-~~~~-~~~----~~~~~~~~~~~~~~~~~divI 199 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVI-NNAV-GRE----AVVGVDARGIEDVIAAADGVV 199 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHH-hhcc-Ccc----eEEecCHhHHHHHHhhcCEEE
Confidence 4689999999999999999999883 47999999999888886541 1000 000 011111 1223346789999
Q ss_pred Eccch
Q 012596 205 HAMPV 209 (460)
Q Consensus 205 laVp~ 209 (460)
=++|.
T Consensus 200 NaTp~ 204 (283)
T PRK14027 200 NATPM 204 (283)
T ss_pred EcCCC
Confidence 88884
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.2 Score=49.95 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=66.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCe-EEEEeCC--HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG-- 199 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~-V~v~~r~--~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~-- 199 (460)
+..||.|.|. |.+|..+..+|.+.| ++ |+.+++. .+.+ .++.+..+.+++-+.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g--~~~v~pVnp~~~~~~v-------------------~G~~~y~sv~dlp~~~~ 65 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYG--TNIVGGVTPGKGGTTV-------------------LGLPVFNTVAEAVEATG 65 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCC--CCEEEEECCCCCCCeE-------------------eCeeccCCHHHHhhccC
Confidence 4579999996 889999999999887 54 4344443 2111 124455678776665
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
.|++++++|...+.+++++..+. .-..+|-++.|+..+..+.+.+..++
T Consensus 66 ~DlAvi~vp~~~v~~~l~e~~~~--gvk~avI~s~Gf~~~~~~~l~~~a~~ 114 (291)
T PRK05678 66 ANASVIYVPPPFAADAILEAIDA--GIDLIVCITEGIPVLDMLEVKAYLER 114 (291)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 89999999999999988886552 11244555677764322234444433
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.13 Score=50.07 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=68.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~--~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.-||.|+|.|.+|.+.|..+...|.-.++.++|.++++++ .+--++... + .-.+++....|... -+++++||
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~-f----~~~~~V~~~~Dy~~-sa~S~lvI 93 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSA-F----LSTPNVVASKDYSV-SANSKLVI 93 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccc-c----ccCCceEecCcccc-cCCCcEEE
Confidence 5799999999999999999988886568999999887543 222222110 1 11235666556654 47899999
Q ss_pred Eccchhc------------HHHHHHHhhhc---CCCCCeEEEeccCCcc
Q 012596 205 HAMPVQF------------SSSFLEGISDY---VDPGLPFISLSKGLEL 238 (460)
Q Consensus 205 laVp~~~------------~~~vl~~i~~~---l~~~~iIV~~~~Gi~~ 238 (460)
++.-..+ .-++++.|.+. ..|+++++-.+|-++.
T Consensus 94 iTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDi 142 (332)
T KOG1495|consen 94 ITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDI 142 (332)
T ss_pred EecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHH
Confidence 9875421 11233444332 3478888888886553
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.019 Score=58.15 Aligned_cols=107 Identities=10% Similarity=0.123 Sum_probs=58.3
Q ss_pred CeEEEECcchHHHHHHHHHHhc------CCCCeEE-EEeCCHHHHHHHHhhcCCCcc----CCCCCCCCceEEe-CCHHh
Q 012596 128 NKVVVLGGGSFGTAMAAHVANK------KSQLKVY-MLMRDPAVCQSINEKHCNCRY----FPEQKLPENVIAT-TDAKT 195 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~------G~~~~V~-v~~r~~~~~~~l~~~g~~~~~----~~~~~l~~~i~a~-~~~~e 195 (460)
|||+|+|.|++|..++..|.+. |.+.+|+ +.|++.... +..|++... .....+. ..... -+.++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~---~~~Gldl~~l~~~~~~g~l~-~~~~~~~~~~~ 76 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYY---NERGLDIGKIISYKEKGRLE-EIDYEKIKFDE 76 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCccc---CCcCCChHHHHHHHhcCccc-cCCCCcCCHHH
Confidence 5899999999999999999873 4334544 556553211 111211100 0000000 00000 13444
Q ss_pred hc-CCCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 196 AL-LGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 196 a~-~~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
.+ .++|+||-|+++... ......+.+.++.|.-+|...+|...
T Consensus 77 ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA 121 (326)
T PRK06392 77 IFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLA 121 (326)
T ss_pred HhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHH
Confidence 32 468999999985321 12234445566678889988887654
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.094 Score=51.63 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+..+|.|+|+|.+|+..|..|++.|. .+++++|.+.-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI-GAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCEe
Confidence 35799999999999999999999996 47999997753
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.18 Score=50.75 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=61.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC--cE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA--DY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~-~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a--Di 202 (460)
..|+||+|+|.|+.-+++.|.-.-. +|.|+ +.+|+.+++.++.+.+. +| +.++..+.++++++. |+
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~---------~~-~~k~y~syEeLakd~~vDv 75 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHN---------IP-NPKAYGSYEELAKDPEVDV 75 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcC---------CC-CCccccCHHHHhcCCCcCE
Confidence 4689999999999999999974321 36666 77898888888877542 22 345667888888764 99
Q ss_pred EEEccchhcHHHHHHHhh
Q 012596 203 CLHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~ 220 (460)
|.++.|..+..+++--++
T Consensus 76 Vyi~~~~~qH~evv~l~l 93 (351)
T KOG2741|consen 76 VYISTPNPQHYEVVMLAL 93 (351)
T ss_pred EEeCCCCccHHHHHHHHH
Confidence 999999877666554443
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=52.62 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=55.9
Q ss_pred CCeEEEECc-chHHHHHHHHHH-hcCCCCe---EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVA-NKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La-~~G~~~~---V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|++|||||+ |.+|.-|.+.|. ... .+ +.+++... .|.....+.+... .+....+.++ +.++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~--f~~~~l~~~ss~~--------sg~~~~~f~g~~~--~v~~~~~~~~-~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEND--FDLIEPVFFSTSQ--------AGGAAPSFGGKEG--TLQDAFDIDA-LKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCC--CCcCcEEEecchh--------hCCcccccCCCcc--eEEecCChhH-hcCCC
Confidence 479999996 999999998554 444 44 66654432 1211111222111 1121123333 57899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCC--CeEEEecc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~--~iIV~~~~ 234 (460)
++|+|+|.....++...+.+ .| .++|+.+.
T Consensus 68 ivf~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss 99 (369)
T PRK06598 68 IIITCQGGDYTNEVYPKLRA---AGWQGYWIDAAS 99 (369)
T ss_pred EEEECCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 99999998877777666544 46 56888774
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.067 Score=56.78 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-----~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
.+||+|+|+|.-|.++|..|.+.| ++|+++|+++. ..+.+.+.|.. +....+..+.+.++|
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~------------~~~~~~~~~~~~~~d 79 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVK------------LVLGENYLDKLDGFD 79 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCE------------EEeCCCChHHhccCC
Confidence 468999999999999999999999 99999997642 12345444431 111112223357899
Q ss_pred EEEEc
Q 012596 202 YCLHA 206 (460)
Q Consensus 202 iVila 206 (460)
+||.+
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 99887
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.092 Score=52.86 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=55.1
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++||+||| .|..|.-+.+.|.++. ..++.....+... . + .+.++...++|+||+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~---------~------------~---~~~~~~~~~~DvvFl 56 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRK---------D------------A---AARRELLNAADVAIL 56 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCC---------c------------c---cCchhhhcCCCEEEE
Confidence 57999999 7999999999999875 2344433322210 0 0 122334568999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+|.....++..++.+ .|..||+++.
T Consensus 57 alp~~~s~~~~~~~~~---~g~~VIDlSa 82 (313)
T PRK11863 57 CLPDDAAREAVALIDN---PATRVIDAST 82 (313)
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEECCh
Confidence 9998877776666543 5788999875
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.07 Score=54.15 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=32.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.++|.|||+|-||...++.|.++|. .+|++.+|+.+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~-~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGY-SRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence 4799999999999999999999984 47999999973
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.08 Score=56.71 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=47.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|.|+|+|..|.+.+..|...| .+|+++|+.+...+.+.+.|.. + .......+.+.++|+||.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~~~~~l~~~g~~--~----------~~~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPDALRPHAERGVA--T----------VSTSDAVQQIADYALVVTS 77 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHhCCCE--E----------EcCcchHhHhhcCCEEEEC
Confidence 478999999999999999999998 8999999876655555444431 1 1111223345788999886
Q ss_pred c
Q 012596 207 M 207 (460)
Q Consensus 207 V 207 (460)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.029 Score=57.87 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=33.7
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|++.++|.|||+|..|.++|..|++.| ++|++++|.+.
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~ 38 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAE 38 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCcc
Confidence 344579999999999999999999999 89999998753
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.06 Score=54.58 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=32.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQ 166 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~ 166 (460)
||||.|.|+ |.+|+.++..|.++ | ++|+.++|+.+...
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~--~~V~~~~r~~~~~~ 40 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD--WEVYGMDMQTDRLG 40 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC--CeEEEEeCcHHHHH
Confidence 478999997 99999999999876 5 89999999765443
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.095 Score=55.90 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS 167 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~ 167 (460)
++||.|+|+|..|.++|..|.+.| ++|+++|++.....+
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~ 53 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELG--CDVVVADDNETARHK 53 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC--CEEEEECCChHHHHH
Confidence 578999999999999999999999 899999987654433
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.12 Score=49.36 Aligned_cols=96 Identities=10% Similarity=-0.070 Sum_probs=58.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCH----------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP----------AVCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~----------~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
+.++|+|.|.|++|..+|..|.+.| . .|.+.|.+. +.++...+.+.- ..++. .... +.+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G--~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~-~~~~~------~~~~-~~~ 91 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG--GKVLAVSDPDGYIYDPGITTEELINYAVALGGS-ARVKV------QDYF-PGE 91 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCc-cccCc------cccc-Ccc
Confidence 3689999999999999999999998 5 455778777 555555444321 11111 0111 111
Q ss_pred hh-cCCCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 195 TA-LLGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 195 ea-~~~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+. -.+||+++-|.....+ .+....+ + -.+|+--.|+-
T Consensus 92 ~l~~~~~DVlipaA~~~~i~~~~a~~l----~-a~~V~e~AN~p 130 (217)
T cd05211 92 AILGLDVDIFAPCALGNVIDLENAKKL----K-AKVVAEGANNP 130 (217)
T ss_pred cceeccccEEeeccccCccChhhHhhc----C-ccEEEeCCCCC
Confidence 21 1379999999887653 3333333 2 34666666643
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.28 Score=48.97 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=64.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhh---cCCCc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTA---LLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea---~~~aD 201 (460)
...+|+.||+|..|..-...+++...+..++.+|.+++..+..++.-.. ...+...+.+. .|..+. ..+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-----~~gL~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-----DPDLSKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-----ccCccCCcEEEECchhhcccccCCcC
Confidence 4589999999999876655555443235799999999876655442110 00111223321 222221 36899
Q ss_pred EEEEccc----hhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 202 YCLHAMP----VQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 202 iVilaVp----~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+|++.+= ...-..+++.+.+.+++|.+++.-
T Consensus 198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999852 134577899999999998876653
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.066 Score=59.46 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+||+|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4579999999999999999999999 9999999864
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.28 Score=48.19 Aligned_cols=45 Identities=11% Similarity=0.344 Sum_probs=40.1
Q ss_pred cCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 125 ~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
++++++.|-| .+.+|..+|..|+++| ++|+++.|+.++++++.++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g--~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG--YNLILVARREDKLEALAKE 49 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHH
Confidence 3467899999 6899999999999999 9999999999999888764
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.092 Score=51.86 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=49.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
.++.|+|+|..+.+++..|++.|. .+|++++|+.++.+.+.+.- .. ....+.. ...+|+||-|+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~~a~~la~~~-~~------------~~~~~~~--~~~~dlvINaT 186 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF-TDGTIVARNEKTGKALAELY-GY------------EWRPDLG--GIEADILVNVT 186 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHh-CC------------cchhhcc--cccCCEEEECC
Confidence 589999999999999999999883 36999999999888887641 00 0000111 24589999999
Q ss_pred ch
Q 012596 208 PV 209 (460)
Q Consensus 208 p~ 209 (460)
|.
T Consensus 187 p~ 188 (272)
T PRK12550 187 PI 188 (272)
T ss_pred cc
Confidence 84
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.43 Score=47.51 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi 202 (460)
+..||.|.| .|.+|..+-.+|...| .+ .+|..++.+ +.. . -.++.+..+..++-+. .|+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g--~~-~v~~V~p~~-------~~~--~------v~G~~~y~sv~dlp~~~~~Dl 66 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYG--TN-IVGGVTPGK-------GGT--T------VLGLPVFDSVKEAVEETGANA 66 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCC--CC-EEEEECCCC-------Ccc--e------ecCeeccCCHHHHhhccCCCE
Confidence 457899999 7999999999999888 66 555555520 000 0 0134455677776555 799
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+++++|...+.+++++.... . -..+|-++.|+...
T Consensus 67 avi~vpa~~v~~~l~e~~~~-G-vk~avIis~Gf~e~ 101 (286)
T TIGR01019 67 SVIFVPAPFAADAIFEAIDA-G-IELIVCITEGIPVH 101 (286)
T ss_pred EEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCHH
Confidence 99999999999988887552 1 12445567787543
|
ATP citrate lyases appear to form an outgroup. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.13 Score=54.77 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|||+|..|..+|..|.+.| ++|+++++.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 468999999999999999999999 8999999654
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=51.62 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=55.9
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++|||.|. +|.++|..|.+.| ..|+++.... .++.+..+.||+||
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvv 212 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRN--ATVSVCHVFT----------------------------DDLKKYTLDADILV 212 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCC--CEEEEEeccC----------------------------CCHHHHHhhCCEEE
Confidence 368999999999 9999999999888 8999887432 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++--... + -..++++|+++|++.
T Consensus 213 ~AvG~p~~---i--~~~~vk~gavVIDvG 236 (287)
T PRK14176 213 VATGVKHL---I--KADMVKEGAVIFDVG 236 (287)
T ss_pred EccCCccc---c--CHHHcCCCcEEEEec
Confidence 97753321 1 123678899999875
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.087 Score=52.05 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||-| .+|.++|..|.++| ..|+++.... .++.+..+.||+||
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~--AtVti~hs~T----------------------------~~l~~~~~~ADIvV 205 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNAN--ATVDICHIFT----------------------------KDLKAHTKKADIVI 205 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEE
Confidence 36899999988 89999999999888 8899764321 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 206 ~AvGkp~~---i--~~~~vk~gavvIDvG 229 (281)
T PRK14183 206 VGVGKPNL---I--TEDMVKEGAIVIDIG 229 (281)
T ss_pred EecCcccc---c--CHHHcCCCcEEEEee
Confidence 99975443 1 134577899999875
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.037 Score=56.59 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=33.7
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|.++++|+|||+|.-|.++|..|++.| ++|+++++.++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE 38 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 445689999999999999999999999 89999998753
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.04 Score=57.20 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=31.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+|+|||+|.+|.+.|..|++.| ++|++++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence 68999999999999999999999 89999999753
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.015 Score=48.21 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=56.3
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhh
Q 012596 333 NLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVS 412 (460)
Q Consensus 333 kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~k 412 (460)
|+..|.+.++..+.++|+..+|+++|+|...+.+..+....+. ..-..+|..+ .|..+. |
T Consensus 8 K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~------~~~~~pg~g~-GG~Clp-------------k 67 (96)
T PF00984_consen 8 KYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG------PHYLRPGPGF-GGSCLP-------------K 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT------SSS-S-SSS---SSCHH-------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc------cccCCCCCCC-CCcchh-------------h
Confidence 4445677888899999999999999999877765422211000 0000111111 234442 7
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 413 TAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 413 d~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
|...++..++++|++.++++.+.+.
T Consensus 68 D~~~L~~~~~~~g~~~~ll~~~~~~ 92 (96)
T PF00984_consen 68 DPYALIYLAKELGYPPQLLEAVINI 92 (96)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 8899999999999999999888765
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.15 Score=51.21 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=54.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.||+|+| .|..|.-+.+.|++.. +.++.....+.. . . ..+.++.++++|++|+|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~---------~--------------~-~~~~~~~~~~~D~vFla 56 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR---------K--------------D-AAERAKLLNAADVAILC 56 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc---------c--------------C-cCCHhHhhcCCCEEEEC
Confidence 4899999 7999999999999764 234443322211 0 0 01344556789999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|.....++...+. ..+..||+++.
T Consensus 57 lp~~~s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 57 LPDDAAREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred CCHHHHHHHHHHHH---hCCCEEEECCh
Confidence 99887776665553 35788999885
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.18 Score=42.32 Aligned_cols=84 Identities=15% Similarity=-0.004 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHH-HH
Q 012596 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS-FL 216 (460)
Q Consensus 138 mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~-vl 216 (460)
-+..++..|.+.| .+|.++|..-........ +. ..++...+++.++++++|+||++++-..... -.
T Consensus 18 p~~~l~~~L~~~g--~~V~~~DP~v~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 18 PALELIEELKERG--AEVSVYDPYVDEEEIKEL-GK----------LEGVEVCDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp HHHHHHHHHHHTT---EEEEE-TTSHHHHHHHH-CH----------HHCEEEESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred HHHHHHHHHHHCC--CEEEEECCccChHHHHhh-CC----------ccceEEecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 4567899999999 899999986543332221 00 0135667789999999999999999776554 24
Q ss_pred HHhhhcCCCCCeEEEecc
Q 012596 217 EGISDYVDPGLPFISLSK 234 (460)
Q Consensus 217 ~~i~~~l~~~~iIV~~~~ 234 (460)
+.+...++++.+|+++-+
T Consensus 85 ~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp HHHHHHSCSSEEEEESSS
T ss_pred HHHHHhcCCCCEEEECcc
Confidence 566666767788888765
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.08 Score=49.41 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=59.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCC-CceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP-ENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~-~~i~a~~~~~ea~~~aDiV 203 (460)
..++|+||| ...+|.++|..|.+.| ..|++++.+.... ... +...++. ..+ .+ ...++.+.++.||+|
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~--AtVti~~~~~~~~--~~~-~~~~~hs---~t~~~~--~~~~l~~~~~~ADIV 130 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDG--ARVYSVDINGIQV--FTR-GESIRHE---KHHVTD--EEAMTLDCLSQSDVV 130 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEEecCcccc--ccc-ccccccc---cccccc--hhhHHHHHhhhCCEE
Confidence 468999999 5568999999999988 8999997553211 000 0000000 000 00 001256778999999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|.+++..... + =.+++++|+++|++.
T Consensus 131 IsAvG~~~~~--i--~~d~ik~GavVIDVG 156 (197)
T cd01079 131 ITGVPSPNYK--V--PTELLKDGAICINFA 156 (197)
T ss_pred EEccCCCCCc--c--CHHHcCCCcEEEEcC
Confidence 9999865431 0 134567899999975
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.11 Score=51.91 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=55.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCH---HhhcCCCc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDA---KTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea~~~aD 201 (460)
..++|+|+|+|-+|+ ||..++++ ++++|+++++... +-+.++..|.. .| +..+.|. +++...-|
T Consensus 181 pG~~vgI~GlGGLGh-~aVq~AKA-MG~rV~vis~~~~kkeea~~~LGAd-~f---------v~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGH-MAVQYAKA-MGMRVTVISTSSKKKEEAIKSLGAD-VF---------VDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCcEEEEecCcccch-HHHHHHHH-hCcEEEEEeCCchhHHHHHHhcCcc-ee---------EEecCCHHHHHHHHHhhc
Confidence 458999999999887 67777776 3499999999874 44455545532 11 1222233 22334457
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.++-++.+. .+..++.+..+++.+-.+|.+
T Consensus 249 g~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 249 GGIDTVSNL-AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred Ccceeeeec-cccchHHHHHHhhcCCEEEEE
Confidence 777777743 222334444555554444443
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.16 Score=48.75 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=59.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeC----------CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMR----------DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r----------~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
+.++|+|.|.|++|..++..|.+.| ..|+ +.|. +.+.+.++.+.......+++ . ... +.+
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g--~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~-----~-~~~-~~~ 100 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAG--AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPG-----A-ERI-TNE 100 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCC-----c-eec-CCc
Confidence 3589999999999999999999998 8888 6666 55555555443222111111 1 111 111
Q ss_pred hh-cCCCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 195 TA-LLGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 195 ea-~~~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+. -.+||+++-|.+...+ .+-+..+. -.+|+-..|+-
T Consensus 101 ~i~~~~~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~ 139 (227)
T cd01076 101 ELLELDCDILIPAALENQITADNADRIK-----AKIIVEAANGP 139 (227)
T ss_pred cceeecccEEEecCccCccCHHHHhhce-----eeEEEeCCCCC
Confidence 21 1379999998876553 44444442 24666666643
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.12 Score=51.18 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++.+.++.||+||
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~--atVt~chs~t----------------------------~~l~~~~~~ADIvI 206 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNEN--ATVTYCHSKT----------------------------KNLAELTKQADILI 206 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEEeCCc----------------------------hhHHHHHHhCCEEE
Confidence 468999999 6778999999999888 8999885422 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 207 ~AvG~p~~---i--~~~~ik~gavVIDvG 230 (284)
T PRK14190 207 VAVGKPKL---I--TADMVKEGAVVIDVG 230 (284)
T ss_pred EecCCCCc---C--CHHHcCCCCEEEEee
Confidence 99975542 1 134567899999875
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.1 Score=55.61 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=31.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.+||+|||+|..|...|..|++.| ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCC
Confidence 3579999999999999999999998 8999998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.065 Score=55.28 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=48.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aDi 202 (460)
+.|||.|.|+ |-+|+.++..|.++ | ++|++++|+.+....+...+.. ...++..+ ...+.-..+..++++++|+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g--~~V~~l~r~~~~~~~l~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETP--HKVLALDVYNDKIKHLLEPDTV-PWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCC--CEEEEEecCchhhhhhhccccc-cCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 3589999995 99999999999987 5 8999999887655544322110 00001100 0011101134456778999
Q ss_pred EEEcc
Q 012596 203 CLHAM 207 (460)
Q Consensus 203 VilaV 207 (460)
||-+.
T Consensus 90 ViHlA 94 (386)
T PLN02427 90 TINLA 94 (386)
T ss_pred EEEcc
Confidence 99765
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.11 Score=54.00 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=56.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCC----------CCCCc--eEE---
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPEN--VIA--- 189 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~----------~l~~~--i~a--- 189 (460)
+..||.|||+|.+|+.++..|+++|. -.++++|.+.-....++.+-. +....+.. .+.+. +.+
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 35799999999999999999999996 468888876422222221100 00001000 01111 111
Q ss_pred --e-CCHHhhcCCCcEEEEccchhcHHHHHHHhh
Q 012596 190 --T-TDAKTALLGADYCLHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 190 --~-~~~~ea~~~aDiVilaVp~~~~~~vl~~i~ 220 (460)
+ .+..+.+.++|+||.|+-....+.++..+.
T Consensus 116 ~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 116 RLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred ccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1 123455788999999988777766666554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.2 Score=51.23 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=56.9
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCC-ccCCCCCCCCceEEeCCHHhhc--CCCcEEEE
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNC-RYFPEQKLPENVIATTDAKTAL--LGADYCLH 205 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~-~~~~~~~l~~~i~a~~~~~ea~--~~aDiVil 205 (460)
++.|+|+|.||...+..+...|. .+|++.|+++++++..++.+... ...+... .......+.- ..+|++|-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-----~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGADVVVNPSED-----DAGAEILELTGGRGADVVIE 244 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCeEeecCccc-----cHHHHHHHHhCCCCCCEEEE
Confidence 79999999999998777777773 57888899999888777633211 1100000 0000011111 35999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEE
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~ 231 (460)
|+-.. ..+++....++++-.++.
T Consensus 245 ~~G~~---~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 245 AVGSP---PALDQALEALRPGGTVVV 267 (350)
T ss_pred CCCCH---HHHHHHHHHhcCCCEEEE
Confidence 99833 344455555565554443
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.11 Score=50.19 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 68999999999999999999996 4788888765
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.083 Score=58.93 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC----------CCCc--eEEe---
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK----------LPEN--VIAT--- 190 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~----------l~~~--i~a~--- 190 (460)
+..||+|+|+| +|+..|..|++.|.--+++++|.+.-....++........++..+ +.+. +.+.
T Consensus 106 ~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 106 GRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred hcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 35799999999 999999999999830268888866422222222110101110000 1111 1111
Q ss_pred ---CCHHhhcCCCcEEEEccchhcHHHHHHHh
Q 012596 191 ---TDAKTALLGADYCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 191 ---~~~~ea~~~aDiVilaVp~~~~~~vl~~i 219 (460)
++.++.+.++|+||-|+-....+.++...
T Consensus 185 i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 185 LTEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred CCHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 24566778999999999987777666554
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.91 Score=43.40 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=53.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+.++|||.|..|.+...+....+ +... +..|++++++.+.+--. . +.. |.+...+-.+++|+
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~--~~cs~i~srS~~~a~~LaE~~~---------a-~p~----d~~~~ael~~~vfv 73 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVV--VACSAISSRSRDRAQNLAETYV---------A-PPL----DVAKSAELLLLVFV 73 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchh--eeehhhhhcCHHHHhhchhccC---------C-Ccc----chhhChhhhceEEe
Confidence 478999999999999555555444 3333 34577777666544211 0 111 22222234688899
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
-+|......+... ....++++++.|+
T Consensus 74 ~vpd~~~s~vaa~--~~~rpg~iv~HcS 99 (289)
T COG5495 74 DVPDALYSGVAAT--SLNRPGTIVAHCS 99 (289)
T ss_pred cchHHHHHHHHHh--cccCCCeEEEEcc
Confidence 9987744443322 2345889999987
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.15 Score=54.23 Aligned_cols=66 Identities=23% Similarity=0.214 Sum_probs=46.0
Q ss_pred CCCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+.++|.|||+|..|.+ +|+.|.+.| ++|+++|.... ..+.+.+.|... ....+. +.+.++|+|
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G--~~V~~~D~~~~~~~~~l~~~gi~~------------~~~~~~-~~~~~~d~v 70 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLG--YKVSGSDLKESAVTQRLLELGAII------------FIGHDA-ENIKDADVV 70 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCC--CeEEEECCCCChHHHHHHHCCCEE------------eCCCCH-HHCCCCCEE
Confidence 3578999999999999 799999999 99999997643 333454444311 001122 345689999
Q ss_pred EEc
Q 012596 204 LHA 206 (460)
Q Consensus 204 ila 206 (460)
|++
T Consensus 71 v~s 73 (461)
T PRK00421 71 VYS 73 (461)
T ss_pred EEC
Confidence 885
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.14 Score=50.82 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=56.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++||| ...+|.++|..|.+.+ ..|+++.... .++++..+.||+||
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~--aTVtichs~T----------------------------~~l~~~~~~ADIvI 203 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLRED--ATVTLAHSKT----------------------------QDLPAVTRRADVLV 203 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5678999999999887 8899875432 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 204 sAvGkp~~---i--~~~~vk~GavVIDVG 227 (287)
T PRK14173 204 VAVGRPHL---I--TPEMVRPGAVVVDVG 227 (287)
T ss_pred EecCCcCc---c--CHHHcCCCCEEEEcc
Confidence 99975432 1 135578899999874
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.16 Score=54.55 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=45.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~--~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.++|.|+|.|..|.++|+.|.+.| ++|+++|.... ..+.+.+.+.... +.......+.+.++|+||
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~~~~L~~~~~~~~----------~~~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPNLAALRAELPDAE----------FVGGPFDPALLDGVDLVA 74 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchhHHHHHhhcCCcE----------EEeCCCchhHhcCCCEEE
Confidence 468999999999999999999999 99999997542 2334544432111 111111233456889999
Q ss_pred Ec
Q 012596 205 HA 206 (460)
Q Consensus 205 la 206 (460)
.+
T Consensus 75 ~s 76 (498)
T PRK02006 75 LS 76 (498)
T ss_pred EC
Confidence 86
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.061 Score=55.47 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.++|.|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence 4589999999999999999999999 8999999875
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.17 Score=54.83 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=38.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
.+++.|+|+|.+|.+++..|++.| .+|++++|+.++++.+.+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G--~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKG--ARVVIANRTYERAKELADA 421 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHH
Confidence 468999999999999999999999 7999999998888877653
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.4 Score=45.26 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=34.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l 168 (460)
+++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG--AKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChhHHHHH
Confidence 478999995 999999999999999 8999999998765543
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.094 Score=58.26 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+||+|||+|..|...|..|++.| ++|+++++.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~ 226 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANE 226 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 579999999999999999999999 9999999764
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.11 Score=56.21 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=36.5
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
..+.|.|.|+ |.+|..++..|++.| ++|++++|+.++.+.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGVRSAQRAESLV 121 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 4578999996 999999999999999 99999999988776554
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.17 Score=53.29 Aligned_cols=34 Identities=29% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|+|+|.+|.++|..|++.| ++|+++|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCC
Confidence 468999999999999999999999 9999999764
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.16 Score=50.19 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=56.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++||| ...+|.+++..|.++| ..|+++.... .++.+..+.||+||
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~--AtVt~chs~T----------------------------~~l~~~~~~ADIvI 206 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNEN--ATVTICHSKT----------------------------KNLKEVCKKADILV 206 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5678999999999888 8899886432 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 207 sAvGkp~~---i--~~~~ik~gavVIDvG 230 (278)
T PRK14172 207 VAIGRPKF---I--DEEYVKEGAIVIDVG 230 (278)
T ss_pred EcCCCcCc---c--CHHHcCCCcEEEEee
Confidence 99985443 1 134578899999873
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.16 Score=50.34 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=55.7
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI 204 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHD--ATVTIAHSKT----------------------------RNLKQLTKEADILV 204 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEECCCC----------------------------CCHHHHHhhCCEEE
Confidence 358999999 5578999999999888 8899875321 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++.-..+ + -.+++++|+++|++.
T Consensus 205 ~AvG~p~~---i--~~~~vk~GavVIDvG 228 (282)
T PRK14169 205 VAVGVPHF---I--GADAVKPGAVVIDVG 228 (282)
T ss_pred EccCCcCc---c--CHHHcCCCcEEEEee
Confidence 99985443 1 134577899999874
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.066 Score=55.58 Aligned_cols=46 Identities=33% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhc-CCCC-eEEEEeCCH
Q 012596 111 WSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANK-KSQL-KVYMLMRDP 162 (460)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~-G~~~-~V~v~~r~~ 162 (460)
|++.|.+.. ..+.-.|.|||+|.+|.+.|..|++. | . +|+++++..
T Consensus 18 ~~~~~~~~~----~~~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~ 65 (407)
T TIGR01373 18 WKPAWRSPE----PKPTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGW 65 (407)
T ss_pred CCcccCCCC----CCccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEccc
Confidence 888887654 22345799999999999999999985 7 5 899999863
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.063 Score=54.89 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+|.|||+|..|.+.|..|+++| ++|+++.+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 68999999999999999999999 89999998764
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.16 Score=50.67 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=55.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.| ..|+++.... .++.+..+.||+||
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvI 206 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAAN--ATVTIAHSRT----------------------------QDLASITREADILV 206 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 358999999 5678999999999988 8899874321 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++..... + -..++++|+++|++.
T Consensus 207 sAvGkp~~---i--~~~~ik~gavVIDvG 230 (297)
T PRK14186 207 AAAGRPNL---I--GAEMVKPGAVVVDVG 230 (297)
T ss_pred EccCCcCc---c--CHHHcCCCCEEEEec
Confidence 99985432 1 135678899999875
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.12 Score=52.14 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=52.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHH---HHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCCC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVC---QSINEKHCNCRYFPEQK-LPENVIATTDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~---~~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~a 200 (460)
.+++|+|-| .|.+|+.+...|..+| |.|....|+++.- +.+.+...... ... +...+....+..+++.+|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG--Y~V~gtVR~~~~~k~~~~L~~l~~a~~---~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG--YTVRGTVRDPEDEKKTEHLRKLEGAKE---RLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC--CEEEEEEcCcchhhhHHHHHhcccCcc---cceEEeccccccchHHHHHhCC
Confidence 358999999 6999999999999999 9999999998752 22333211100 000 011223345678889999
Q ss_pred cEEEEcc
Q 012596 201 DYCLHAM 207 (460)
Q Consensus 201 DiVilaV 207 (460)
|.||.+-
T Consensus 80 dgVfH~A 86 (327)
T KOG1502|consen 80 DGVFHTA 86 (327)
T ss_pred CEEEEeC
Confidence 9999753
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.4 Score=45.79 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=36.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+.++|.|.| .|.+|..++..|++.| ++|++++|+++..+.+.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG--AKVVIADLNDEAAAAAA 45 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 457899999 6999999999999999 99999999987665543
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.15 Score=54.14 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=35.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH 172 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g 172 (460)
.+||.|||.|..|.+.|..|.+.| ++|+++|+.+.....+.+.|
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~~~~l~~~g 52 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGG--AEVIAWDDNPASRAKAAAAG 52 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEECCChhhHHHHHhcC
Confidence 468999999999999999999999 99999998754444444444
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.044 Score=54.56 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=46.5
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||.|.|+ |.+|..++..|++.| ++|++++|+++....+...+. ... ...+.-.+++.++++++|+||.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~-----~~D~~~~~~l~~~~~~~d~vi~~ 71 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG--EEVRVLVRPTSDRRNLEGLDV--EIV-----EGDLRDPASLRKAVAGCRALFHV 71 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC--CEEEEEEecCccccccccCCc--eEE-----EeeCCCHHHHHHHHhCCCEEEEe
Confidence 58999995 999999999999999 999999998654332221111 100 00011012345566789999876
Q ss_pred cc
Q 012596 207 MP 208 (460)
Q Consensus 207 Vp 208 (460)
..
T Consensus 72 a~ 73 (328)
T TIGR03466 72 AA 73 (328)
T ss_pred ce
Confidence 53
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.17 Score=50.04 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=56.7
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~~l~~~~~~ADIvI 207 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMN--ATVTLCHSKT----------------------------QNLPSIVRQADIIV 207 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 6678999999999888 8999886432 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++..... + -.+++++|+++|++.
T Consensus 208 sAvGk~~~---i--~~~~ik~gavVIDvG 231 (284)
T PRK14177 208 GAVGKPEF---I--KADWISEGAVLLDAG 231 (284)
T ss_pred EeCCCcCc---c--CHHHcCCCCEEEEec
Confidence 99985443 1 135578899999974
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.18 Score=49.84 Aligned_cols=73 Identities=25% Similarity=0.241 Sum_probs=56.0
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~--ATVt~chs~T----------------------------~dl~~~~k~ADIvI 206 (282)
T PRK14180 157 EGAYAVVVGASNVVGKPVSQLLLNAK--ATVTTCHRFT----------------------------TDLKSHTTKADILI 206 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHhhhcCEEE
Confidence 368999999 5578999999999888 8999886432 25666678999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -..++++|+++|++.
T Consensus 207 sAvGkp~~---i--~~~~vk~gavVIDvG 230 (282)
T PRK14180 207 VAVGKPNF---I--TADMVKEGAVVIDVG 230 (282)
T ss_pred EccCCcCc---C--CHHHcCCCcEEEEec
Confidence 99985443 1 124577899999874
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.47 Score=45.41 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=36.4
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.++|.|.|+ |.+|..+|..|++.| ++|++.+|+++.++.+.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~ 46 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG--GIVIAADIDKEALNELLE 46 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEecChHHHHHHHH
Confidence 4578999995 899999999999999 899999999877665543
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.18 Score=49.92 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=56.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~nl~~~~~~ADIvI 205 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAG--ATVSVCHIKT----------------------------KDLSLYTRQADLII 205 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 5568999999999887 8999876432 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -..++++|+++|++.
T Consensus 206 sAvGkp~~---i--~~~~vk~GavVIDvG 229 (282)
T PRK14166 206 VAAGCVNL---L--RSDMVKEGVIVVDVG 229 (282)
T ss_pred EcCCCcCc---c--CHHHcCCCCEEEEec
Confidence 99985443 1 134577899999874
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.11 Score=53.00 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=57.6
Q ss_pred CCeEEEECcchHHHHHHHHHHh--------cCCCCeEE-EEeCCHHH-------HHHHHh---hcCCCccCCCCCCCCce
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN--------KKSQLKVY-MLMRDPAV-------CQSINE---KHCNCRYFPEQKLPENV 187 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~--------~G~~~~V~-v~~r~~~~-------~~~l~~---~g~~~~~~~~~~l~~~i 187 (460)
.++|+|+|.|++|+.++..|.+ .|.+..|. +.+++... .+++.+ .+..... ++...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~-----~~~~~ 76 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSN-----WGNDY 76 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhh-----ccccc
Confidence 4799999999999999999987 34223444 44543211 111111 1100000 00000
Q ss_pred EE-eCCHHhhc--CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 188 IA-TTDAKTAL--LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 188 ~a-~~~~~ea~--~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
.. ..+.++.+ .++|+||-++......++.. ..+..+..+|...+|..
T Consensus 77 ~~~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~---~al~~G~~VVtanK~~l 126 (336)
T PRK08374 77 EVYNFSPEEIVEEIDADIVVDVTNDKNAHEWHL---EALKEGKSVVTSNKPPI 126 (336)
T ss_pred cccCCCHHHHHhcCCCCEEEECCCcHHHHHHHH---HHHhhCCcEEECCHHHH
Confidence 00 11555655 47999999887655544443 34456888888888743
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.18 Score=57.79 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
..+||+|||+|.-|...|..|++.| |+|++|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccc
Confidence 4689999999999999999999999 999999964
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.19 Score=50.77 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=59.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC--------CCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKK--------SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA--- 193 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G--------~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~--- 193 (460)
+.+||+|+|.|.+|+.++..|.+++ .+..|. +.+|+...... ..+.+. -...++.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~--~~~~~~-----------~~~~~~~~~~ 68 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRD--LDLLNA-----------EVWTTDGALS 68 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccc--ccccch-----------hhheeccccc
Confidence 5689999999999999999999863 123333 34555432220 011100 0011121
Q ss_pred --Hhh--cCCCcEEEEccch--hcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 194 --KTA--LLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 194 --~ea--~~~aDiVilaVp~--~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
.+. ..+.|+|+-+++. ...+. ++.+.+.++.|..+|+.-|+...
T Consensus 69 ~~~~~~~~~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA 118 (333)
T COG0460 69 LGDEVLLDEDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLA 118 (333)
T ss_pred ccHhhhccccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhH
Confidence 222 2467899988886 33454 66677778888888887765543
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.07 Score=54.96 Aligned_cols=35 Identities=34% Similarity=0.418 Sum_probs=32.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|++|.|||+|..|.+.|..|++.| ++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Confidence 578999999999999999999999 89999998754
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.42 Score=49.06 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=56.6
Q ss_pred CeEEEECc-chHHHHHHHHHH-hcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVA-NKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La-~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+||||+|+ |.+|..|...|. +..+. .++.+++.... .|... .+.+... .+...++. +...+.|++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s-------~g~~~-~f~~~~~--~v~~~~~~-~~~~~vDivf 69 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQL-------GQAAP-SFGGTTG--TLQDAFDI-DALKALDIII 69 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhh-------CCCcC-CCCCCcc--eEEcCccc-ccccCCCEEE
Confidence 58999997 999999999999 65532 34455554321 12111 1112211 22222222 2467899999
Q ss_pred EccchhcHHHHHHHhhhcCCCC--CeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~--~iIV~~~~ 234 (460)
+|.++...+.+.....+ .| .++|+.+.
T Consensus 70 fa~g~~~s~~~~p~~~~---aG~~~~VIDnSS 98 (366)
T TIGR01745 70 TCQGGDYTNEIYPKLRE---SGWQGYWIDAAS 98 (366)
T ss_pred EcCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 99998877666655443 46 67888764
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.15 Score=51.59 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=66.9
Q ss_pred hhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
++|...+++.|.|.|-.|...|.+|...| .+|.++..+|-++-+..=.|. ++. ..+++++.+|
T Consensus 204 n~liaGK~vVV~GYG~vGrG~A~~~rg~G--A~ViVtEvDPI~AleA~MdGf--------------~V~-~m~~Aa~~gD 266 (420)
T COG0499 204 NVLLAGKNVVVAGYGWVGRGIAMRLRGMG--ARVIVTEVDPIRALEAAMDGF--------------RVM-TMEEAAKTGD 266 (420)
T ss_pred ceeecCceEEEecccccchHHHHHhhcCC--CeEEEEecCchHHHHHhhcCc--------------EEE-EhHHhhhcCC
Confidence 37767799999999999999999999777 999999999854433332332 332 3567788999
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
++|.++-...+-.. +=...++++.++.+.. -++.+
T Consensus 267 ifiT~TGnkdVi~~--eh~~~MkDgaIl~N~G-HFd~E 301 (420)
T COG0499 267 IFVTATGNKDVIRK--EHFEKMKDGAILANAG-HFDVE 301 (420)
T ss_pred EEEEccCCcCccCH--HHHHhccCCeEEeccc-cccee
Confidence 99999886553211 1123356676665543 14443
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.44 Score=45.03 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=35.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++|.|+|+ |.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEG--YKVAITARDQKELEEAAA 48 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC--CEEEEeeCCHHHHHHHHH
Confidence 368999985 999999999999988 899999999876655443
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.45 Score=53.14 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=68.3
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC---CCCEEEEECcc-----cHH-HHhc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP---RQPFIALSGPS-----FAL-ELMN 273 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~---~~~~~v~~gP~-----~a~-e~~~ 273 (460)
||+|+|...+.++++++.++++++++|.++.. += ..+.+.+.+.++.. +++...+.|+. .+. ++.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~S-vK----~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~ 75 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGS-TK----SDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYV 75 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCc-cc----HHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhC
Confidence 68999999999999999999999999988753 11 12333333333211 11112233333 222 3445
Q ss_pred cCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHH
Q 012596 274 KLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA 317 (460)
Q Consensus 274 g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ka 317 (460)
|....++.. ..+.+.++.+++++...|.++...+.-.+++...+
T Consensus 76 ~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~ 120 (673)
T PRK11861 76 GRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAA 120 (673)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHH
Confidence 554433322 23577899999999999988887665555554433
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.19 Score=49.80 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=55.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++|||- ..+|.++|..|.+.+ ..|+++.... .++.+.++.||+||
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI 205 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNEN--ATVTIAHSRT----------------------------KDLPQVAKEADILV 205 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 3689999995 568999999999888 8999875321 25677788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 206 ~AvG~~~~---i--~~~~vk~GavVIDvG 229 (284)
T PRK14170 206 VATGLAKF---V--KKDYIKPGAIVIDVG 229 (284)
T ss_pred EecCCcCc---c--CHHHcCCCCEEEEcc
Confidence 99985443 1 134577899999874
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.13 Score=56.05 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
..++|+|||+|..|...|..|++.| ++|+++++.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence 4689999999999999999999999 899999864
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.43 Score=48.17 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=58.7
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCC--CCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~-V~v~~r~~~~~~~l~~~g~~~~~~~~~--~l~~~i~a~~~~~ea~~~aDi 202 (460)
++||||+| .|.+|..|...|.+..+..+ +.++...+.. |.....+.+. ..+..+ .+.. ..+++|+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSa-------G~~~~~f~~~~~~v~~~~---~~~~-~~~~~Di 69 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSA-------GKKYIEFGGKSIGVPEDA---ADEF-VFSDVDI 69 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccccc-------CCccccccCccccCcccc---cccc-ccccCCE
Confidence 47999998 79999999999999654444 5555554422 2210111111 111111 1222 2468999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|.|.+....+++...+.+ .|.++|+.+.
T Consensus 70 vf~~ag~~~s~~~~p~~~~---~G~~VIdnsS 98 (334)
T COG0136 70 VFFAAGGSVSKEVEPKAAE---AGCVVIDNSS 98 (334)
T ss_pred EEEeCchHHHHHHHHHHHH---cCCEEEeCCc
Confidence 9999998777777666654 4788888664
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.17 Score=49.61 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=36.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+++|.|.|+ |.+|..+|..|++.| ++|++.+|+++..+.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G--~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG--WRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 467999997 999999999999999 999999999887766554
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.088 Score=53.87 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=32.6
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+++++|+|||+|.+|.+.|..|++.| .+|+++++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCc
Confidence 34689999999999999999999999 8999999765
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.14 Score=49.88 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=36.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
++++|.|.|+ |.+|..++..|++.| ++|++.+|+.+.++.+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG--YTVYGAARRVDKMEDLA 44 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 4578999995 899999999999999 99999999987666554
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.21 Score=49.78 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=55.8
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+.| ..|+++.... .++++.++.||+||
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~--ATVtvchs~T----------------------------~nl~~~~~~ADIvv 215 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKAD--ATVTVVHSRT----------------------------PDPESIVREADIVI 215 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5568999999999888 8999885421 25677789999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++.... ++. .+++++|+++|++.
T Consensus 216 ~AvGk~~---~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 216 AAAGQAM---MIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred EcCCCcC---ccC--HHHcCCCCEEEEee
Confidence 9997532 111 35678899999875
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.18 Score=57.48 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=47.5
Q ss_pred ccCCCeEEEECcchHHHHH-HHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFGTAM-AAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~-A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|+++++|.|||+|..|.+. |+.|.+.| ++|+++|.+.. ..+.+.+.|.. + ..-.+. +.+.++|
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G--~~V~~sD~~~~~~~~~L~~~gi~--~----------~~g~~~-~~~~~~d 65 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG--YSVSGSDLSEGKTVEKLKAKGAR--F----------FLGHQE-EHVPEDA 65 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC--CeEEEECCCCChHHHHHHHCCCE--E----------eCCCCH-HHcCCCC
Confidence 5567789999999999997 99999999 99999997542 34445554431 1 111122 3456789
Q ss_pred EEEEc
Q 012596 202 YCLHA 206 (460)
Q Consensus 202 iVila 206 (460)
+||.+
T Consensus 66 ~vV~S 70 (809)
T PRK14573 66 VVVYS 70 (809)
T ss_pred EEEEC
Confidence 99875
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.075 Score=55.21 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=34.6
Q ss_pred hccCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 123 ILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 123 ~~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
.+.++|||.|+|+ |.+|..++..|.+.| ++|++++|+...
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G--~~V~~l~R~~~~ 96 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRG--YNVVAVAREKSG 96 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEEechhh
Confidence 3445789999996 999999999999999 999999998754
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.8 Score=45.56 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|+|+|.+|+.+|.+|+.+|. ..++++|.+.
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCc
Confidence 4799999999999999999999996 4799998764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.086 Score=54.21 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc---CCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANK---KSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~---G~~~~V~v~~r~ 161 (460)
++++|.|||+|..|.++|..|++. | ++|+++++.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 568999999999999999999998 8 999999984
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.55 Score=44.60 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=35.5
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+++++.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG--WDLALVARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 3568999995 999999999999999 89999999987655544
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.15 Score=51.80 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=48.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH--HHhh-cC--CCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS--INEK-HC--NCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~--l~~~-g~--~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
+++|.|.|+ |.+|+.++..|.++| ++|++.+|+.+.... +... +. ...++ ...+.-..+..++++++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~~~~~~~~~ 82 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG--YTVKGTVRNPDDPKNTHLRELEGGKERLILC-----KADLQDYEALKAAIDGC 82 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCchhhhHHHHHHhhCCCCcEEEE-----ecCcCChHHHHHHHhcC
Confidence 578999997 999999999999999 999999997653211 1111 00 00110 00111112445667889
Q ss_pred cEEEEccc
Q 012596 201 DYCLHAMP 208 (460)
Q Consensus 201 DiVilaVp 208 (460)
|+||.+..
T Consensus 83 d~Vih~A~ 90 (342)
T PLN02214 83 DGVFHTAS 90 (342)
T ss_pred CEEEEecC
Confidence 99998764
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.61 Score=44.99 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=35.1
Q ss_pred CCCeEEEECc-c-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-G-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+.+++.|.|+ | .+|.+++..|++.| ++|++.+|+.+..+...
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~ 59 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEG--ARVVISDIHERRLGETA 59 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 4578999997 6 69999999999999 89999999887655443
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.22 Score=49.56 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=56.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~--aTVt~chs~T----------------------------~~l~~~~~~ADIvV 208 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGEN--CTVTTVHSAT----------------------------RDLADYCSKADILV 208 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5678999999999888 8999876432 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -..++++|+++|++.
T Consensus 209 sAvGkp~~---i--~~~~ik~gaiVIDVG 232 (294)
T PRK14187 209 AAVGIPNF---V--KYSWIKKGAIVIDVG 232 (294)
T ss_pred EccCCcCc---c--CHHHcCCCCEEEEec
Confidence 99985443 1 134567899999874
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.18 Score=50.14 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
.++|.|.| +|-+|+.++..|.+.| ++|++++|+.+.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g--~~V~~~~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRG--YTVKATVRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCC--CEEEEEEcCCCc
Confidence 47899999 5999999999999999 999999987643
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.15 Score=51.35 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCCC
Confidence 68999999999999999999996 4799998764
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.12 Score=39.69 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=26.6
Q ss_pred EECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 132 IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|||+|.-|.+.|..|++.| ++|+++++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCc
Confidence 8999999999999999998 9999999876
|
... |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.092 Score=54.04 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.++|..|+++| .+|+++++.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAG--ASVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCC
Confidence 358999999999999999999999 8999999864
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.25 Score=48.89 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=55.6
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~--AtVtichs~T----------------------------~nl~~~~~~ADIvI 205 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERH--ATVTIAHSRT----------------------------ADLAGEVGRADILV 205 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 5678999999999888 8899875321 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++.-... + -.+++++|+++|++.
T Consensus 206 ~AvGk~~~---i--~~~~ik~gaiVIDvG 229 (282)
T PRK14182 206 AAIGKAEL---V--KGAWVKEGAVVIDVG 229 (282)
T ss_pred EecCCcCc---c--CHHHcCCCCEEEEee
Confidence 99975332 1 134578899999874
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.23 Score=49.19 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=55.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHh--cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVAN--KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~--~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..++++||| .+.+|.+++..|.+ .+ ..|+++.... .++.+..+.||+
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~~~--atVtvchs~T----------------------------~~l~~~~k~ADI 206 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRPIGLLLTRRSEN--ATVTLCHTGT----------------------------RDLAAHTRRADI 206 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHhhccCC--CEEEEeCCCC----------------------------CCHHHHHHhCCE
Confidence 368999999 56789999999998 55 7898875431 256677889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.++....+ + -..++++|+++|++.
T Consensus 207 vV~AvGkp~~---i--~~~~ik~GavVIDvG 232 (284)
T PRK14193 207 IVAAAGVAHL---V--TADMVKPGAAVLDVG 232 (284)
T ss_pred EEEecCCcCc---c--CHHHcCCCCEEEEcc
Confidence 9999975432 1 135678899999874
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.25 Score=49.00 Aligned_cols=73 Identities=18% Similarity=0.314 Sum_probs=55.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~--ATVtichs~T----------------------------~~L~~~~~~ADIvV 207 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKEN--CSVTICHSKT----------------------------HNLSSITSKADIVV 207 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5568999999999888 8899875321 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++..... + -..++++|+++|++.
T Consensus 208 ~AvGkp~~---i--~~~~vk~GavVIDvG 231 (288)
T PRK14171 208 AAIGSPLK---L--TAEYFNPESIVIDVG 231 (288)
T ss_pred EccCCCCc---c--CHHHcCCCCEEEEee
Confidence 99974431 1 134578899999874
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.22 Score=50.79 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=56.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.||| ...+|.++|..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 230 ~GK~vvVIGRS~iVGkPLa~LL~~~~--ATVTicHs~T----------------------------~nl~~~~r~ADIVI 279 (364)
T PLN02616 230 KGKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT----------------------------KNPEEITREADIII 279 (364)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCC--CeEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 6678999999999988 8899875321 25667789999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 280 sAvGkp~~---i--~~d~vK~GAvVIDVG 303 (364)
T PLN02616 280 SAVGQPNM---V--RGSWIKPGAVVIDVG 303 (364)
T ss_pred EcCCCcCc---C--CHHHcCCCCEEEecc
Confidence 99975443 1 135578899999864
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.23 Score=50.41 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=55.8
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+++ ..|+++.... .++.+..+.||+||
T Consensus 213 ~GK~vvVIGRS~iVGkPla~LL~~~~--ATVTicHs~T----------------------------~nl~~~~~~ADIvI 262 (345)
T PLN02897 213 AGKNAVVIGRSNIVGLPMSLLLQRHD--ATVSTVHAFT----------------------------KDPEQITRKADIVI 262 (345)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5568999999999888 8899875422 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++.-..+ + -.+++++|+++|++.
T Consensus 263 sAvGkp~~---v--~~d~vk~GavVIDVG 286 (345)
T PLN02897 263 AAAGIPNL---V--RGSWLKPGAVVIDVG 286 (345)
T ss_pred EccCCcCc---c--CHHHcCCCCEEEEcc
Confidence 99975442 1 134578899999874
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.11 Score=51.93 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=29.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.+|+|||+|.-|.++|..|+++| ++|+++++.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcc--cccccchhccc
Confidence 47999999999999999999999 99999998753
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=93.27 E-value=4.4 Score=39.93 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=91.3
Q ss_pred ceEEeCCHHhhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEEC
Q 012596 186 NVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSG 264 (460)
Q Consensus 186 ~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~g 264 (460)
++++++|-.|+++++|++|+-+|-.. ...+++.+.+++++|++|.+..+ +.+- .+...++. ++...+.+. ..-
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCT-Ipt~---~ly~ilE~-l~R~DvgVs-S~H 199 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACT-IPTT---KFAKIFED-LGREDLNVT-SYH 199 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEecccc-CChH---HHHHHHHh-hCcccCCee-ccC
Confidence 56778887889999999999999655 67899999999999998877553 4442 23334433 343211111 111
Q ss_pred cccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEE-cCChHHH--HHHHHHHHHHHHHHHHHh----cc-cCCC
Q 012596 265 PSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST-SSDVTGV--EIAGALKNVLAIAAGIVV----GM-NLGN 336 (460)
Q Consensus 265 P~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~--~~~kalkNv~ai~~g~~~----~~-kl~~ 336 (460)
|.-.-+ ..++ .++.-+=.+.++.+++.++-++.+-..+. ..|+.+. .++.++.-+. ..|+.+ +. .++.
T Consensus 200 PaaVPg-t~~q-~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv~--~aGiL~Y~~~~t~IlgA 275 (340)
T TIGR01723 200 PGCVPE-MKGQ-VYIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAIV--YAGLLAYRDAVTKILGA 275 (340)
T ss_pred CCCCCC-CCCc-eEeecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHHH--HHHHHHHHHHHHHHhcC
Confidence 211111 1121 22322334688999999999987655543 3443331 1333322111 012211 11 1222
Q ss_pred c--HHHHHHHHHHHHHHHHHHHcCCC
Q 012596 337 N--SMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 337 n--~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+ .....+..++.-+..+-+..|++
T Consensus 276 P~~miq~qa~eaL~tmasLme~~GI~ 301 (340)
T TIGR01723 276 PADFAQMMADEALTQIHNLMEEKGID 301 (340)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2 22244555667777777888876
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.18 Score=58.29 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=31.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+||+|||+|.-|.+.|..|++.| |+|++|++..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCC
Confidence 689999999999999999999999 9999999764
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.11 Score=53.10 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..|.|||+|.+|.+.|..|++.| ++|+++++..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEeccc
Confidence 357999999999999999999999 8999999874
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.74 Score=44.06 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=34.8
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
|+|.|.|+ |.+|..++..|++.| ++|++.+|+++.++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG--HKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH
Confidence 68999995 999999999999999 89999999987665554
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.82 Score=43.90 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=35.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|.|+ |.+|..++..|++.| ++|++.+|+.+..+.+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~ 51 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLG--ADVLIVARDADALAQARD 51 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 468899985 899999999999999 899999999877665543
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.66 Score=46.02 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=36.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+.+..+.+.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G--~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG--ATVVAVARREDLLDAVAD 82 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 478999996 999999999999999 999999999877665544
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.13 Score=51.34 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=29.6
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+|+|||+|..|.+.|..|++.| ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeec
Confidence 5899999999999999999999 999999987
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.1 Score=53.77 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+|.|||+|..|.++|..|++.| ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence 58999999999999999999999 89999997653
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.11 Score=53.55 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 468999999999999999999999 9999999753
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.8 Score=43.45 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=35.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG--ATVAFNDGLAAEARELA 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 478999996 999999999999999 89999999987665443
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.22 Score=48.71 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=37.2
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.+
T Consensus 2 ~~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 2 SSMKTWLITGVSSGFGRALAQAALAAG--HRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCCCEEEEecCCChHHHHHHHHHHhCc--CEEEEEeCCHHHHHHHHh
Confidence 34578999995 899999999999999 999999999877665544
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.29 Score=48.60 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=55.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..++++||| ...+|.++|..|.+.|. +..|+++.... .++.+.++.||+
T Consensus 152 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T----------------------------~~l~~~~~~ADI 203 (287)
T PRK14181 152 HGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS----------------------------ENLTEILKTADI 203 (287)
T ss_pred CCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC----------------------------CCHHHHHhhCCE
Confidence 368999999 55689999999998721 16888765321 256777889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.++....+ + -.+++++|+++|++.
T Consensus 204 vV~AvG~p~~---i--~~~~ik~GavVIDvG 229 (287)
T PRK14181 204 IIAAIGVPLF---I--KEEMIAEKAVIVDVG 229 (287)
T ss_pred EEEccCCcCc---c--CHHHcCCCCEEEEec
Confidence 9999975432 1 135678899999874
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.11 Score=54.13 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=31.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+|.|||+|..|.++|..|+++| ++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCc
Confidence 68999999999999999999999 89999998763
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.31 Score=51.48 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=33.2
Q ss_pred hccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+|+..-.|+|||.|..|.++|+.|.+.| ++|+++|..+
T Consensus 2 ~~~~~~~~~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~ 39 (448)
T PRK03803 2 LMQSDGLHIVVGLGKTGLSVVRFLARQG--IPFAVMDSRE 39 (448)
T ss_pred ccccCCeEEEEeecHhHHHHHHHHHhCC--CeEEEEeCCC
Confidence 4555568999999999999999999999 9999999754
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.12 Score=53.70 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=31.6
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
|...+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 34568999999999999999999999 999999985
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.17 Score=53.30 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=32.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
+|||+|+|+|.-|.+.++.|.+.| .+|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCc
Confidence 689999999999999999999999 999999966543
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.34 Score=48.36 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=54.4
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~----~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
..++|+||| ...+|.++|..|.+ .+ ..|+++.... .++.+.++.|
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--atVt~~hs~t----------------------------~~l~~~~~~A 207 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANLMLQKLKESN--CTVTICHSAT----------------------------KDIPSYTRQA 207 (295)
T ss_pred CCCEEEEECCCCcchHHHHHHHHhccccCC--CEEEEEeCCc----------------------------hhHHHHHHhC
Confidence 468999999 55689999999987 45 7888876543 1466778899
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+||.++....+ + -..++++|+++|++.
T Consensus 208 DIvI~Avg~~~l---i--~~~~vk~GavVIDVg 235 (295)
T PRK14174 208 DILIAAIGKARF---I--TADMVKPGAVVIDVG 235 (295)
T ss_pred CEEEEecCccCc---c--CHHHcCCCCEEEEee
Confidence 999999965432 1 124458899999875
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.33 Score=48.21 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=54.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~----~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
..++++||| ...+|.+++..|.+ .+ ..|+++.... .++.+.++.|
T Consensus 156 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--AtVt~~hs~t----------------------------~~l~~~~~~A 205 (286)
T PRK14184 156 AGKKAVVVGRSNIVGKPLALMLGAPGKFAN--ATVTVCHSRT----------------------------PDLAEECREA 205 (286)
T ss_pred CCCEEEEECCCccchHHHHHHHhCCcccCC--CEEEEEeCCc----------------------------hhHHHHHHhC
Confidence 368999999 56789999999998 55 7888876542 1566778899
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+||.++....+ +. .+++++|+++|++.
T Consensus 206 DIVI~AvG~p~l---i~--~~~vk~GavVIDVG 233 (286)
T PRK14184 206 DFLFVAIGRPRF---VT--ADMVKPGAVVVDVG 233 (286)
T ss_pred CEEEEecCCCCc---CC--HHHcCCCCEEEEee
Confidence 999999975443 11 23457899999875
|
|
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.65 Score=40.75 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=72.6
Q ss_pred hhccCCCeEEEECcc----hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 122 DILERTNKVVVLGGG----SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG----~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
+++.+.++|+++|+- .-+-..+..|.++| ++|+=++..-.- +.+. | -++..++.+.-
T Consensus 11 ~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~G--Y~ViPVNP~~~~-~eiL--G--------------~k~y~sL~dIp 71 (140)
T COG1832 11 EILKSAKTIAVVGASDKPDRPSYRVAKYLQQKG--YRVIPVNPKLAG-EEIL--G--------------EKVYPSLADIP 71 (140)
T ss_pred HHHHhCceEEEEecCCCCCccHHHHHHHHHHCC--CEEEeeCcccch-HHhc--C--------------chhhhcHHhCC
Confidence 345566899999984 67888999999999 999988874321 1111 1 13445777877
Q ss_pred CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccch
Q 012596 198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+..|+|-+..++..+.+++++.... +..++-+|-|+.+++
T Consensus 72 e~IDiVdvFR~~e~~~~i~~eal~~---~~kv~W~QlGi~n~e 111 (140)
T COG1832 72 EPIDIVDVFRRSEAAPEVAREALEK---GAKVVWLQLGIRNEE 111 (140)
T ss_pred CCCcEEEEecChhhhHHHHHHHHhh---CCCeEEEecCcCCHH
Confidence 7899999999999999988876553 467788999998863
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.92 Score=44.86 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=65.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhc----CCC-----CeEEEEeCCHH------HHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATT 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~----G~~-----~~V~v~~r~~~------~~~~l~~~g~~~~~~~~~~l~~~i~a~~ 191 (460)
..||.|+|+|+-|..+|..|.+. |.. .+++++|+.-- .+...+..-.. . ... .-..
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~-----~--~~~--~~~~ 95 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFAR-----K--DEE--KEGK 95 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHh-----h--cCc--ccCC
Confidence 47999999999999999999887 631 37888887521 01111110000 0 000 1124
Q ss_pred CHHhhcC--CCcEEEEcc--chhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 192 DAKTALL--GADYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 192 ~~~ea~~--~aDiVilaV--p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++.|+++ ++|++|=+. +.-..+++++.+.++.+ .-+|..++|-..
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~-~PIIFaLSNPt~ 144 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE-RPIIFALSNPTS 144 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC-CCEEEECCCcCC
Confidence 7889998 889888654 34467888888887653 568888888443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.25 Score=50.16 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=48.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.++|.|.|+ |.+|+.++..|++.| ++|++++|+.+..+.+..........+... +...+.-.....++++++|.||
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG--YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC--CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 578999995 999999999999999 999999988655443322100000000000 0001111123456677899998
Q ss_pred Ecc
Q 012596 205 HAM 207 (460)
Q Consensus 205 laV 207 (460)
.+.
T Consensus 83 H~A 85 (351)
T PLN02650 83 HVA 85 (351)
T ss_pred EeC
Confidence 765
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.3 Score=52.00 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..++|+|||+|..|...|..|++.| ++|+++++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 3579999999999999999999999 8999999764
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.13 Score=53.50 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..+|.|||+|..|.++|..|++.| ++|+++++.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence 368999999999999999999999 99999998754
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.13 Score=53.23 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=31.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+++|.|||+|..|.++|..|+++| ++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 478999999999999999999999 999999997
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.95 Score=43.95 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=35.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+.++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAG--AAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 4579999996 899999999999999 89999999987655443
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.14 Score=53.05 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhc--CCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~--G~~~~V~v~~r~~ 162 (460)
+.+|.|||+|.+|.++|..|++. | .+|+++++..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g--~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPG--ARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCC--CeEEEEeCCC
Confidence 36899999999999999999998 8 8999999875
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.1 Score=51.29 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=31.0
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
+|.|+|+ |.+|+.++..|.+.| ++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g--~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS--VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC--CcEEEEeCCCcc
Confidence 5889997 999999999999999 999999999764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.14 Score=52.86 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.+|.|||+|..|.++|..|++.| .+|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAG--LSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCC
Confidence 468999999999999999999999 8999999864
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.14 Score=54.57 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..++|+|||+|.-|.+.|..|.+.| ++|+++.++..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~ 44 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQ 44 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 4589999999999999999999999 89999998764
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.75 Score=44.05 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=35.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|.|+ |.+|..++..|++.| ++|++.+|+++..+++.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG--AAVAIADLNQDGANAVAD 49 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 468999997 999999999999999 899999999876555443
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.13 Score=54.38 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=32.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..++++|||||.-|.+.|+.|.+.| ++|+++.|+..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCC--CCceEEEecCC
Confidence 3579999999999999999999999 99999998764
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.15 Score=52.92 Aligned_cols=34 Identities=29% Similarity=0.613 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|||+|.-|.++|..|++.| ++|+++++.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCC
Confidence 578999999999999999999999 9999999765
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.55 Score=45.81 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=63.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhc----CCC-----CeEEEEeCCH------HHHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATT 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~----G~~-----~~V~v~~r~~------~~~~~l~~~g~~~~~~~~~~l~~~i~a~~ 191 (460)
..||.|+|+|.-|..+|..|.+. |.. .+++++|+.- +.....++.-... .. + .....
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~----~~--~--~~~~~ 96 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARK----TN--P--EKDWG 96 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBS----SS--T--TT--S
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhcc----Cc--c--ccccc
Confidence 47999999999999999999988 852 4688888752 1111111110000 00 0 01114
Q ss_pred CHHhhcCCC--cEEEEcc--chhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 192 DAKTALLGA--DYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 192 ~~~ea~~~a--DiVilaV--p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++.|+++.+ |++|=+. +.-..+++++.+.++.. .-+|..++|-..
T Consensus 97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e-rPIIF~LSNPt~ 145 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE-RPIIFPLSNPTP 145 (255)
T ss_dssp SHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS-SEEEEE-SSSCG
T ss_pred CHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC-CCEEEECCCCCC
Confidence 788988887 9888653 45568899999888754 567888888544
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.1 Score=45.33 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=56.2
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+|.|+|+|.+|...+..+++ .| ...|+++++++++.+.+++.+. .+ ...+..+. ..+|+||=
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~~~~--~~-----------~~~~~~~~-~g~d~viD 228 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSFADE--TY-----------LIDDIPED-LAVDHAFE 228 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhhcCc--ee-----------ehhhhhhc-cCCcEEEE
Confidence 5689999999999988777765 33 1579999999887776654221 00 01111121 24799998
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
++........++...+.++++..++.+
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 887432333444455556666555543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.93 Score=43.66 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=34.7
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
|+|.|.|+ |.+|.+++..|++.| ++|++.+|+++..+.+.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~ 42 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG--ARVVISSRNEENLEKALK 42 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 68899995 789999999999999 899999999876655443
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.21 Score=52.91 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=32.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.++|+|||+|.-|.+-|..|+++| |+|+++.+.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~ 157 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVAL 157 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCC
Confidence 489999999999999999999999 99999987653
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.91 Score=46.09 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=57.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC---CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR---DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r---~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..+|.|+|+|.+|...+..+...| .+|+++++ ++++.+.+.+.|.......+ ..+ . +. ......|+|
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~----~~~--~-~~-~~~~~~d~v 242 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGATYVNSSK----TPV--A-EV-KLVGEFDLI 242 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCEEecCCc----cch--h-hh-hhcCCCCEE
Confidence 468999999999999988887778 78999998 56666666665542110000 000 0 01 112468999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
|-++.... .+.+....++++..++.+
T Consensus 243 id~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 243 IEATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred EECcCCHH---HHHHHHHHccCCcEEEEE
Confidence 99997542 223333445555555544
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.23 Score=50.56 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=52.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeC---CHHhhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATT---DAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~-~~~l~~~g~~~~~~~~~~l~~~i~a~~---~~~ea~~~aDi 202 (460)
+++|||||.|..|..|+..-.+-| ++|.++|.+++. +..+....... ..+ .+.++++.||+
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG--~~v~vLdp~~~~PA~~va~~~i~~-------------~~dD~~al~ela~~~DV 65 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLG--IKVIVLDPDADAPAAQVADRVIVA-------------AYDDPEALRELAAKCDV 65 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcC--CEEEEecCCCCCchhhcccceeec-------------CCCCHHHHHHHHhhCCE
Confidence 478999999999999999998888 999999987652 22222221110 112 35667789999
Q ss_pred E---EEccchhcHHHHHHH
Q 012596 203 C---LHAMPVQFSSSFLEG 218 (460)
Q Consensus 203 V---ilaVp~~~~~~vl~~ 218 (460)
| |--||.+.++.+...
T Consensus 66 iT~EfE~V~~~aL~~l~~~ 84 (375)
T COG0026 66 ITYEFENVPAEALEKLAAS 84 (375)
T ss_pred EEEeeccCCHHHHHHHHhh
Confidence 8 446777666655443
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.31 Score=48.00 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=56.5
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.++ +|.+|+..|...+ ..|+++.... .++.+..+.+|+++
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~n--aTVtvcHs~T----------------------------~~l~~~~k~ADIvv 204 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNAN--ATVTVCHSRT----------------------------KDLASITKNADIVV 204 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCC--CEEEEEcCCC----------------------------CCHHHHhhhCCEEE
Confidence 368999999775 6999999999988 8999886532 25666778999999
Q ss_pred Eccchhc-HHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~-~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++--.. +. .+++++|+++|+..
T Consensus 205 ~AvG~p~~i~------~d~vk~gavVIDVG 228 (283)
T COG0190 205 VAVGKPHFIK------ADMVKPGAVVIDVG 228 (283)
T ss_pred EecCCccccc------cccccCCCEEEecC
Confidence 9997543 22 46778899999864
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.31 Score=46.14 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=35.4
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
||+.|.|+ |.+|..++..|++.| ++|++.+|+.++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g--~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG--HKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 57899986 899999999999999 999999999877765543
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.32 Score=49.47 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=34.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
.|||.|.| +|.+|+.++..|++.| ++|++.+|+.+..+.+.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~ 51 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDPAKSLHLL 51 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence 58999999 5999999999999999 89999999876554443
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.29 Score=49.80 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=33.1
Q ss_pred hccCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 123 ILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 123 ~~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..++|||.|.|+ |.+|+.++..|.+.| ++|++++|..
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~ 49 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFS 49 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 3345689999995 999999999999998 8999999854
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=2.9 Score=41.11 Aligned_cols=159 Identities=15% Similarity=0.185 Sum_probs=90.5
Q ss_pred ceEEeCCHHhhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC------CCC
Q 012596 186 NVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQP 258 (460)
Q Consensus 186 ~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~------~~~ 258 (460)
++++++|-.|+++++|++|+-+|-.. ...+++.+.+++++|++|.+..+ +.+- .+...+.+ ++.. +++
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCT-Ipt~---~ly~~le~-l~R~DvgIsS~HP 202 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACT-IPTT---KFAKIFKD-LGRDDLNVTSYHP 202 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecccc-CCHH---HHHHHHHH-hCcccCCeeccCC
Confidence 56778777888999999999999655 68899999999999998877553 4432 33344443 3432 222
Q ss_pred EEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEE-cCChHHH--HHHHHHHHHHHHHHHHHh----c
Q 012596 259 FIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST-SSDVTGV--EIAGALKNVLAIAAGIVV----G 331 (460)
Q Consensus 259 ~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~--~~~kalkNv~ai~~g~~~----~ 331 (460)
.++-..| |+. .+.-+-.+.++.+++.++-++.+-..+. ..|+.+. .++.++.-+. ..|+.+ +
T Consensus 203 aaVPgt~--------Gq~-~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VTAv~--~aGiL~Y~~~~ 271 (342)
T PRK00961 203 GAVPEMK--------GQV-YIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVTAIV--YAGILAYRDAV 271 (342)
T ss_pred CCCCCCC--------Cce-ecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHHH--HHHHHHHHHHH
Confidence 2221111 221 1111224678999999999987655543 3444332 1333322111 012211 1
Q ss_pred c-cCCCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012596 332 M-NLGNN--SMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 332 ~-kl~~n--~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
. .++.+ .....+..++.-+..|-+..|++
T Consensus 272 tqIlgAP~~mie~qa~eaL~tmasLme~~GI~ 303 (342)
T PRK00961 272 TQILGAPADFAQMMADEALTQITALMREEGID 303 (342)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 1 12222 22344556667777777888876
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.16 Score=52.89 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~ 163 (460)
|||+|||+|.-|.++|..|+++| + +|+++.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g--~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHS--HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC--CCCEEEEecCCc
Confidence 68999999999999999999987 5 8999998764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.35 Score=46.27 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=34.9
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
++|.|.|+ |.+|..++..|++.| ++|++++|+.+..+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g--~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG--YRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHhHHHH
Confidence 47999998 999999999999999 89999999987665443
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.38 Score=48.02 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=54.7
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..++|+||| ...+|.++|..|.+.|. +..|+++.... .++.+..+.||+
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T----------------------------~~l~~~~~~ADI 211 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS----------------------------KNLARHCQRADI 211 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC----------------------------cCHHHHHhhCCE
Confidence 368999999 66789999999998720 16788774321 256677889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.++.-..+ + -..++++|+++|++.
T Consensus 212 vVsAvGkp~~---i--~~~~ik~gavVIDvG 237 (297)
T PRK14168 212 LIVAAGVPNL---V--KPEWIKPGATVIDVG 237 (297)
T ss_pred EEEecCCcCc---c--CHHHcCCCCEEEecC
Confidence 9999864432 1 134578899999874
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.17 Score=53.70 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=33.6
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||++++|.|||+|.-|.+.|..|+++| ++|+++..++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~ 37 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADP 37 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 567789999999999999999999998 8999998765
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.31 Score=49.14 Aligned_cols=77 Identities=27% Similarity=0.455 Sum_probs=47.5
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC--CCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC--NCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~--~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
+.++|.|.|+ |.+|+.++..|++.|..++|++++|+......+.+... +..++ ...+.-..+..++++++|+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v-----~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFF-----IGDVRDKERLTRALRGVDY 77 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEE-----EccCCCHHHHHHHHhcCCE
Confidence 4578999995 99999999999987523689999988765444432210 01100 0001101133455678999
Q ss_pred EEEcc
Q 012596 203 CLHAM 207 (460)
Q Consensus 203 VilaV 207 (460)
||.+.
T Consensus 78 Vih~A 82 (324)
T TIGR03589 78 VVHAA 82 (324)
T ss_pred EEECc
Confidence 99754
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.84 Score=44.50 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCC---------CeEEEEeCCHH------HHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQ---------LKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATT 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~---------~~V~v~~r~~~------~~~~l~~~g~~~~~~~~~~l~~~i~a~~ 191 (460)
..||.|+|+|+-|..+|..|.+.+.. .+++++|+.-- ......+.- .+|. ..-....
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~--~~~~------~~~~~~~ 96 (254)
T cd00762 25 EHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHL--ARFA------NPERESG 96 (254)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHH--HHHc------CcccccC
Confidence 47999999999999999999887631 26777776521 010000000 0000 0001124
Q ss_pred CHHhhcC--CCcEEEEcc--chhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 192 DAKTALL--GADYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 192 ~~~ea~~--~aDiVilaV--p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++.|+++ ++|++|=.. |.-..+++++.+.++. +.-+|..++|-..
T Consensus 97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 145 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEIN-ERPVIFALSNPTS 145 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcC-CCCEEEECCCcCC
Confidence 7889998 899887543 4446788888887765 3568888888443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.27 Score=54.68 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=30.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||+|+|+|.+|+..+..|++.|. -+++++|.+.
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GV-G~l~LvD~D~ 77 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGI-GRFHIADFDQ 77 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCC-CeEEEEcCCE
Confidence 45899999999999999999999996 3677777654
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.1 Score=42.67 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=35.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
.+++.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g--~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG--ASVVVADINAEGAERVA 47 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 478999997 999999999999999 99999999876554443
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.28 Score=49.85 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC----HHHHHHHHhhc---CCCc---cCCCCCC---CCceEEe--C
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD----PAVCQSINEKH---CNCR---YFPEQKL---PENVIAT--T 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~----~~~~~~l~~~g---~~~~---~~~~~~l---~~~i~a~--~ 191 (460)
++||||.|+|++|..+.+.|.+.++..++.++..+ .+.+..+-+.- .... ...+..+ .+.+.+. .
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER 80 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 46999999999999999999876422345555332 22233332211 0000 0001111 1233333 2
Q ss_pred CHHhhc---CCCcEEEEccchhcHHHHHH
Q 012596 192 DAKTAL---LGADYCLHAMPVQFSSSFLE 217 (460)
Q Consensus 192 ~~~ea~---~~aDiVilaVp~~~~~~vl~ 217 (460)
++++.- .++|+||.|+.....++...
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~ 109 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGE 109 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHH
Confidence 454432 38999999998776555443
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.3 Score=42.41 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=37.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
..++|.|.|+ |.+|..++..|++.| ++|++.+|++++++.+.+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAG--AKVVLASRRVERLKELRA 51 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3578999996 999999999999999 899999999887765544
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.78 Score=43.66 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=30.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G--~~V~~~~r~~ 40 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAG--AHVVVNYRQK 40 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 478999996 999999999999999 8999998875
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.38 Score=55.07 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=31.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||+|||+|.+|+.++..|++.|. -+++++|.+.
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGV-G~I~L~D~D~ 366 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGI-GNFNLADFDA 366 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCCE
Confidence 45899999999999999999999996 3677887664
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.18 Score=51.78 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
|.+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKG--IKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCC--CeEEEecCC
Confidence 468999999999999999999999 899999975
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.47 Score=52.18 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.++|.|||+|..|...|..|.+.| ++|+++++.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4578999999999999999999999 9999998764
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.59 Score=49.40 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=29.8
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||.|||+|..|.+.|..|.+.| ++|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCC
Confidence 7999999999999999999999 9999999764
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.31 Score=49.10 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=31.8
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
++++|.|.| +|-+|+.++..|.+.| ++|++..|+.+
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g--~~V~~~~r~~~ 44 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG--YAVNTTVRDPE 44 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence 357899999 8999999999999999 89988888764
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.21 Score=51.70 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCC
Confidence 368999999999999999999999 9999999876
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.2 Score=51.66 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..++|.|||+|..|...|..|+++| ++|+++++.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCc
Confidence 3578999999999999999999999 89999997763
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=2.2 Score=42.99 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=69.3
Q ss_pred cCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--C
Q 012596 125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--A 200 (460)
Q Consensus 125 ~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--a 200 (460)
.+..||.|-| .|.-|+.-+..+.+.| .+|+ .++... .|.. +. ..++.+.++..|+.+. +
T Consensus 27 ~~~t~v~vqGitg~~g~~h~~~~~~yg--t~iv~GV~Pgk--------gg~~---v~----~~Gvpvy~sv~ea~~~~~~ 89 (317)
T PTZ00187 27 NKNTKVICQGITGKQGTFHTEQAIEYG--TKMVGGVNPKK--------AGTT---HL----KHGLPVFATVKEAKKATGA 89 (317)
T ss_pred cCCCeEEEecCCChHHHHHHHHHHHhC--CcEEEEECCCC--------CCce---Ee----cCCccccCCHHHHhcccCC
Confidence 4457999999 5999999999999999 6655 444332 0100 00 0124456788888776 8
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
|+.+++||...+.+++.+..+. .=..+|.++.|+.......+.+.++
T Consensus 90 D~avI~VPa~~v~dai~Ea~~a--GI~~~ViiteGfpe~d~~~l~~~~~ 136 (317)
T PTZ00187 90 DASVIYVPPPHAASAIIEAIEA--EIPLVVCITEGIPQHDMVKVKHALL 136 (317)
T ss_pred CEEEEecCHHHHHHHHHHHHHc--CCCEEEEECCCCchhhHHHHHHHHh
Confidence 9999999999888877665442 1135677788887654333334443
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.69 Score=48.34 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=58.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCC----------HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRD----------PAVCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~----------~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
+.++|+|.|.|++|...|..|.+.| ..|+ +.|.+ .+.+.+..+.+.....+++ ....+..+
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~------a~~i~~~e 276 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEKG--GKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPG------GDPIDPDD 276 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhcccc------ceEecCcc
Confidence 3589999999999999999999999 7888 66665 4444333333222221111 11111111
Q ss_pred hhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 195 TALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 195 ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
-...+||+++-|--... ..+-+..+ +-.+|+-..||-.
T Consensus 277 ~l~~~~DvliP~Al~~~I~~~na~~i-----~ak~I~egAN~p~ 315 (410)
T PLN02477 277 ILVEPCDVLIPAALGGVINKENAADV-----KAKFIVEAANHPT 315 (410)
T ss_pred ceeccccEEeeccccccCCHhHHHHc-----CCcEEEeCCCCCC
Confidence 12348999987754333 33334443 2357777777654
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.2 Score=45.11 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=57.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDi 202 (460)
..+|.|+|+|.+|...+..+...| . .|++.++++++.+.+.+.|........ ..+..+.. ...|+
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~---------~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREMGADKLVNPQ---------NDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHcCCcEEecCC---------cccHHHHhccCCCCCE
Confidence 468999999999999888777777 5 688899999888877776643111000 00111211 24799
Q ss_pred EEEccchhc-HHHHHHHhhhcCCCCCeEEEe
Q 012596 203 CLHAMPVQF-SSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 203 VilaVp~~~-~~~vl~~i~~~l~~~~iIV~~ 232 (460)
||-++.... +...+ +.++++..++.+
T Consensus 239 vid~~G~~~~~~~~~----~~l~~~G~iv~~ 265 (343)
T PRK09880 239 SFEVSGHPSSINTCL----EVTRAKGVMVQV 265 (343)
T ss_pred EEECCCCHHHHHHHH----HHhhcCCEEEEE
Confidence 999887532 33333 344555566554
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.48 Score=54.77 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+||+|||+|.-|...|..|++.| ++|+++++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEeccc
Confidence 3579999999999999999999999 9999999754
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.24 Score=47.67 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..||.|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 4789999999999999999999996 4799999775
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.21 Score=51.41 Aligned_cols=34 Identities=35% Similarity=0.621 Sum_probs=31.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|.-|.+.|..|+++| ++|+++++.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCC
Confidence 468999999999999999999999 9999999864
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.42 Score=47.58 Aligned_cols=75 Identities=25% Similarity=0.271 Sum_probs=55.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..++|+||| ...+|.+++..|.+.|. +..|+++.... .++.+..+.||+
T Consensus 156 ~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADI 207 (293)
T PRK14185 156 SGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADI 207 (293)
T ss_pred CCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCE
Confidence 368999999 56789999999998731 26788774321 256677789999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.++....+ + -.+++++|+++|++.
T Consensus 208 vIsAvGkp~~---i--~~~~vk~gavVIDvG 233 (293)
T PRK14185 208 IIAALGQPEF---V--KADMVKEGAVVIDVG 233 (293)
T ss_pred EEEccCCcCc---c--CHHHcCCCCEEEEec
Confidence 9999985443 1 135678899999874
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.3 Score=43.07 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=34.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|.| .|.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 45 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKG--YLVIATMRNPEKQENLLS 45 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHH
Confidence 35678888 5899999999999999 999999999876655543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=1.3 Score=42.24 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=36.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
..++|.|.|+ |.+|..+|..|++.| ++|++.+|+++..+.+.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 47 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAA 47 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 3478999995 899999999999999 899999999876555443
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.3 Score=44.94 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=36.2
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G--~~Vvl~~R~~~~l~~~~~ 49 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRG--ARLVLAARDEEALQAVAE 49 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 468999997 899999999999999 899999999887665543
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.1 Score=40.40 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=50.2
Q ss_pred CCeEEEEC-c-chHHHHHHHHHHhcCCCCeEEEEeCCHH-------HHHHH----HhhcCCCccCCCCCCCCceEEeCCH
Q 012596 127 TNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRDPA-------VCQSI----NEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 127 ~~kI~IIG-a-G~mG~~~A~~La~~G~~~~V~v~~r~~~-------~~~~l----~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
.+||++|| . +++..+++..+++-| .+|+++....- .++.. .+.| ..+..++++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g------------~~i~~~~~~ 67 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFG--MEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG------------GKITITDDI 67 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTT--SEEEEESSGGGGGSHHHHHHHHHHHHHHHHT------------TEEEEESSH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcC--CEEEEECCCcccCCCCHHHHHHHHHHHHHhC------------CCeEEEeCH
Confidence 47999999 4 899999999999988 88888876551 12111 1222 246778999
Q ss_pred HhhcCCCcEEEEccch
Q 012596 194 KTALLGADYCLHAMPV 209 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~ 209 (460)
+++++++|+|..-.-.
T Consensus 68 ~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 68 EEALKGADVVYTDRWQ 83 (158)
T ss_dssp HHHHTT-SEEEEESSS
T ss_pred HHhcCCCCEEEEcCcc
Confidence 9999999999876543
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.4 Score=44.68 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~ 50 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRG--AKVVLLARGEEGLEALAA 50 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 467999995 999999999999999 899999999876665543
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.21 Score=51.01 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.|.|||+|.+|.+.|..|++.| .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--CeEEEEeccC
Confidence 5899999999999999999999 8999999853
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=2 Score=45.59 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=51.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|.|||.|.++..=+..|.+.| .+|+++...- +.+..+.+.|. ..+.. .. -...+ ++++++||
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~~~~-i~~~~-----~~----~~~~d-l~~~~lv~ 77 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWADAGM-LTLVE-----GP----FDESL-LDTCWLAI 77 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHhCCC-EEEEe-----CC----CChHH-hCCCEEEE
Confidence 3589999999999999999999998 8999997653 23444444331 11100 00 02233 67899999
Q ss_pred EccchhcHHH
Q 012596 205 HAMPVQFSSS 214 (460)
Q Consensus 205 laVp~~~~~~ 214 (460)
.|+.+..+..
T Consensus 78 ~at~d~~~n~ 87 (457)
T PRK10637 78 AATDDDAVNQ 87 (457)
T ss_pred ECCCCHHHhH
Confidence 9998765443
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.6 Score=49.24 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.++|.|+|.|..|.+.|+.|++.| ++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g--~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG--AEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCC
Confidence 468999999999999999999999 89999997653
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.22 Score=51.51 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G--~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAG--VDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 468999999999999999999999 8999999864
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.4 Score=42.26 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=34.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l 168 (460)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~ 50 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDPAKLAAA 50 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH
Confidence 478999995 999999999999999 8999999998765544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 460 | ||||
| 1evy_A | 366 | Crystal Structure Of Leishmania Mexicana Glycerol-3 | 1e-49 | ||
| 3k96_A | 356 | 2.1 Angstrom Resolution Crystal Structure Of Glycer | 7e-47 | ||
| 1z82_A | 335 | Crystal Structure Of Glycerol-3-Phosphate Dehydroge | 2e-40 | ||
| 1x0x_A | 354 | Co-Structure Of Homo Sapiens Glycerol-3-Phosphate D | 2e-27 | ||
| 1wpq_A | 349 | Ternary Complex Of Glycerol 3-Phosphate Dehydrogena | 3e-27 | ||
| 1x0v_A | 354 | Crystal Structure Of Homo Sapien Glycerol-3-Phospha | 4e-27 | ||
| 2pla_A | 349 | Crystal Structure Of Human Glycerol-3-Phosphate Deh | 5e-24 | ||
| 1txg_A | 335 | Structure Of Glycerol-3-Phosphate Dehydrogenase Fro | 2e-21 | ||
| 4fgw_A | 391 | Structure Of Glycerol-3-phosphate Dehydrogenase, Gp | 3e-18 | ||
| 1yj8_A | 375 | Initial Structural Analysis Of Plasmodium Falciparu | 4e-18 |
| >pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-phosphate Dehydrogenase Length = 366 | Back alignment and structure |
|
| >pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella Burnetii Length = 356 | Back alignment and structure |
|
| >pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Tm0378) From Thermotoga Maritima At 2.00 A Resolution Length = 335 | Back alignment and structure |
|
| >pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Complex With Nad Length = 354 | Back alignment and structure |
|
| >pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1 With Nad And Dihydroxyactone Length = 349 | Back alignment and structure |
|
| >pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1 Length = 354 | Back alignment and structure |
|
| >pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate Dehydrogenase 1-Like Protein Length = 349 | Back alignment and structure |
|
| >pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From Archaeoglobus Fulgidus Length = 335 | Back alignment and structure |
|
| >pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1, From Sacharomyces Cerevisiae Length = 391 | Back alignment and structure |
|
| >pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Glycerol-3- Phosphate Dehydrogenase Length = 375 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 460 | |||
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 1e-146 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 1e-140 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 1e-128 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 1e-124 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 1e-120 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 1e-115 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 2e-37 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 2e-18 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 8e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-11 | |
| 1vjt_A | 483 | Alpha-glucosidase; TM0752, structural genomics, JC | 2e-05 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 6e-05 |
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Length = 366 | Back alignment and structure |
|---|
Score = 421 bits (1086), Expect = e-146
Identities = 117/353 (33%), Positives = 196/353 (55%), Gaps = 11/353 (3%)
Query: 114 TWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173
+ + + D L NK VV G G+FGTA+A ++ K + V + + + +NEK
Sbjct: 2 STKQHSAKDELLYLNKAVVFGSGAFGTALAMVLSKKCRE--VCVWHMNEEEVRLVNEKRE 59
Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYV-----DPGLP 228
N + +L N+ T+D + A GA+ L +P QF F E + + +P
Sbjct: 60 NVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVP 119
Query: 229 FISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288
+ +KG+E +TL+ ++II + L P L+GPSFA+E+ + T + +AS D +
Sbjct: 120 VLVCTKGIERSTLKFPAEIIGEFL--PSPLLSVLAGPSFAIEVATGVFTCVSIASADINV 177
Query: 289 ANAVQQLLAS--KHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346
A +Q+++++ + ++D G E+A A+KNVLAI +G+ G+ +G N+ AAL+ +G
Sbjct: 178 ARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRG 237
Query: 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ 406
EIR L +G + + GL+G GD+ LTC LSRN TVG +LG G +++I +
Sbjct: 238 LLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 297
Query: 407 VAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLPQVEE 459
VAEGV+TA ++ LA++ VKMP+ + I+ + P+ A+ +L+S +E
Sbjct: 298 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLSCGLQDE 350
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Length = 356 | Back alignment and structure |
|---|
Score = 404 bits (1042), Expect = e-140
Identities = 110/335 (32%), Positives = 178/335 (53%), Gaps = 5/335 (1%)
Query: 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP 184
+ + +LG GS+GTA+A +A K + V + + + + N RY P P
Sbjct: 27 PFKHPIAILGAGSWGTALALVLARKGQK--VRLWSYESDHVDEMQAEGVNNRYLPNYPFP 84
Query: 185 ENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM 244
E + A D K +L G L +P + + +D +KGL + R++
Sbjct: 85 ETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLL 143
Query: 245 SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304
+++ L + P +SGPS A E+ LPTA+ +AS + + + + + L + R+
Sbjct: 144 HEVVATEL--GQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVY 201
Query: 305 TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364
+ D+ GVE+ G++KN+LAIA GI G+ LG+N+ AAL+ +G +E+ L + G K T+
Sbjct: 202 KNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETL 261
Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKY 424
TGL+G GD++LTC N SRNR G+ LG G + ++ Q EG+ V ALAQK+
Sbjct: 262 TGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKH 321
Query: 425 NVKMPVLTAVARIIDNELTPKKAVLELMSLPQVEE 459
++MP+ V RI+ +L P++AV EL+ E
Sbjct: 322 AIEMPLTFQVHRILHEDLDPQQAVQELLERSPKAE 356
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Length = 335 | Back alignment and structure |
|---|
Score = 372 bits (959), Expect = e-128
Identities = 115/331 (34%), Positives = 176/331 (53%), Gaps = 15/331 (4%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
+ VLG GS+GT A + + V + R + IN H + Y E K+ V
Sbjct: 16 RFFVLGAGSWGTVFAQMLHENGEE--VILWARRKEIVDLINVSHTS-PYVEESKIT--VR 70
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
AT D + + D + A+PVQ+ L + ++LSKG+E+ T + +S+I+
Sbjct: 71 ATNDLE-EIKKEDILVIAIPVQYIREHLLRL---PVKPSMVLNLSKGIEIKTGKRVSEIV 126
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
+ L P + LSGPS A E+ KLPTA+ +A ++ + +Q+ +++++ R+ T D
Sbjct: 127 EEILGCP---YAVLSGPSHAEEVAKKLPTAVTLAGEN---SKELQKRISTEYFRVYTCED 180
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V GVEIAGALKNV+AIAAGI+ G +N+ AAL +G EI GA T GL+
Sbjct: 181 VVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLA 240
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
G GD+M+TC SRNR G + G +L S NQV EG T AV+ +A++ + M
Sbjct: 241 GIGDLMVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDM 300
Query: 429 PVLTAVARIIDNELTPKKAVLELMSLPQVEE 459
P+ V R++ P +++ +LM +E
Sbjct: 301 PISEEVYRVVYEGKPPLQSMRDLMRRSLKDE 331
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335 | Back alignment and structure |
|---|
Score = 362 bits (932), Expect = e-124
Identities = 76/336 (22%), Positives = 157/336 (46%), Gaps = 15/336 (4%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
V +LG G+ G+A++ + + ++++++ D + +SI+ + R + +
Sbjct: 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVK-LNGVEIF 60
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQ 246
+ L A+ L + + I Y+ + +SKGL N++ + +
Sbjct: 61 WPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQ-YIVLISKGLIDFDNSVLTVPE 119
Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
+ + + R+ +A++GP+ A E+ ++PT +V +S AN ++++ +++ + +
Sbjct: 120 AVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVT 179
Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSEIRWLATKMGAKP 361
+D+ G EI ALKNV +IA + G +N+ + + +E+ L +G
Sbjct: 180 TDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDR 239
Query: 362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ----VAEGVSTAGAV 417
T GLSG GD++ T RN +G LG G +D+ + + + V EG TA
Sbjct: 240 ETAFGLSGFGDLIATF--RGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKA 297
Query: 418 IALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMS 453
L+ K N +L ++ R++ L ++ + EL +
Sbjct: 298 YRLSSKINADTKLLDSIYRVLYEGLKVEEVLFELAT 333
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Length = 354 | Back alignment and structure |
|---|
Score = 353 bits (909), Expect = e-120
Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 25/350 (7%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-----KVYMLMRDPAV-----CQSINEKHCNCR 176
+ KV ++G G++G+A+A V +QL +V M + + + + IN +H N +
Sbjct: 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVK 67
Query: 177 YFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236
Y P KLP NV+A D A AD + +P QF + + ++ ISL KG+
Sbjct: 68 YLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGV 127
Query: 237 ELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
+ L+++S++I + L P L G + A E+ ++ + KD +++
Sbjct: 128 DEGPNGLKLISEVIGERLGIP---MSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKE 184
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
L+ + + RI+ +V VEI GALKNV+A+ AG G+ G+N+ AA++ G E+ A
Sbjct: 185 LMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA 244
Query: 355 TKMGAKPA---TITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM--NQVA 408
+ P T G D++ TC+ RNR V +G+ ++ + + Q
Sbjct: 245 KLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLNGQKL 302
Query: 409 EGVSTAGAVIALAQKYNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ 456
+G TA + ++ Q + K P+ AV ++ + + L + P+
Sbjct: 303 QGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPE 352
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} Length = 375 | Back alignment and structure |
|---|
Score = 341 bits (877), Expect = e-115
Identities = 80/356 (22%), Positives = 151/356 (42%), Gaps = 30/356 (8%)
Query: 129 KVVVLGGGSFGTAMAAHVANK-----KSQLKVYMLMRDPAV-----CQSINEKHCNCRYF 178
K+ +LG G++ +A++ V + +V M +RD V IN KH N +Y
Sbjct: 23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYL 82
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDY----VDPGLPFISLSK 234
LP N++A +D + + AD + +P Q+ S L I + + ISL+K
Sbjct: 83 KGVPLPHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTK 142
Query: 235 GL--ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292
G + N +++ S I L P ALSG + A+++ + + + D+
Sbjct: 143 GFIVKKNQMKLCSNYISDFLNIP---CSALSGANIAMDVAMENFSEATIGGNDKDSLVIW 199
Query: 293 QQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW 352
Q++ + +I+ ++ VEI GALKN++ +A G G+NL NS +A++ G +E+
Sbjct: 200 QRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEMIL 259
Query: 353 LATKM--GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG---SGEKLDDILSSM--N 405
+ G DI+ + RN + +++ + +
Sbjct: 260 FGKVFFQKFNENILLESCGFADIITSFLA--GRNAKCSAEFIKSTPKKTWEELENEILKG 317
Query: 406 QVAEGVSTAGAVIALAQKYNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQVEE 459
Q +G T V + ++ N+ + P+ T + +I P + M+ +
Sbjct: 318 QKLQGTVTLKYVYHMIKEKNMTNEFPLFTVLHKISFENEDPSSLLKTFMNNKINQL 373
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 2e-37
Identities = 56/335 (16%), Positives = 99/335 (29%), Gaps = 33/335 (9%)
Query: 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPE 185
+ VLG G+ G A AA++A K V D + I ++ P
Sbjct: 3 ESKTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTA 60
Query: 186 NV-IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM 244
+ + T+D A+ AD L +P +S I+ Y+ G I L+ G L
Sbjct: 61 HPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEG-QLIILNPGATGGALEFR 119
Query: 245 SQIIPQALRN---------PRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQL 295
+ G + + A + A+K + +
Sbjct: 120 KILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSV 179
Query: 296 LASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG---------NNSMAALVAQG 346
L + T + A+ + L + S+ +L +
Sbjct: 180 LPQ--YVAVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKV 237
Query: 347 CSEIRWLATKMGAKPATITGLSGT--GDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSM 404
+E +A ++ G T + + N I +
Sbjct: 238 DAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNP------AYRGIAGPINLNT 291
Query: 405 NQVAEGVSTAGAVI-ALAQKYNVKMPVLTAVARII 438
E VST + L + NV P++ AV +I
Sbjct: 292 RYFFEDVSTGLVPLSELGRAVNVPTPLIDAVLDLI 326
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245 | Back alignment and structure |
|---|
Score = 83.6 bits (206), Expect = 2e-18
Identities = 42/243 (17%), Positives = 73/243 (30%), Gaps = 29/243 (11%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV- 187
K+ VLG G+ G MA +A +V + RDP + E Q LPE+
Sbjct: 21 KIAVLGTGTVGRTMAGALA--DLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPH 78
Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI 247
+ GA+ ++A S + L G + ++ L+ + +
Sbjct: 79 VHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLN 138
Query: 248 IPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
+ S ++ P A VV + L L+
Sbjct: 139 PV-------------NTDSLGEQIQRTFPEAKVVKT----LNTMNASLMVDPGRAAGGDH 181
Query: 308 DVTGVEIAG----ALKNVLAIA--AGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361
V ++G A V + G ++LG+ + A L +G
Sbjct: 182 SV---FVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWGALGTAN 238
Query: 362 ATI 364
Sbjct: 239 FNF 241
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 8e-17
Identities = 49/362 (13%), Positives = 105/362 (29%), Gaps = 61/362 (16%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV- 187
KV V GGG+ ++ A++ +V +L + + +
Sbjct: 4 KVCVCGGGNGAHTLSGLAASRDGV-EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQ 62
Query: 188 --------IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL--SKGLE 237
+ T D + A+ GAD + +P + + ++ YV + L G E
Sbjct: 63 TEVKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFE 122
Query: 238 LNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLA 297
+ I + P + + + V LA ++ + A
Sbjct: 123 F-----QCRDILGDKAAAVSMMSFETLPWAC--RIKEFGRKVEVLGTKSVLAASLIKGTA 175
Query: 298 SKHLRISTSSDVTGVE--------IAGALKNVLAI--------AAGIVVG--------MN 333
+ST + G E L + G G
Sbjct: 176 KTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMSYSFVHPAILFGRWGSWDGKPVPEAPLFY 235
Query: 334 LGNNSMAALVAQGCS-EIRWLATKMGAKPAT--ITGLSGTGDIMLTCF-VNLSRNRTVGV 389
G + A + CS E + +A + A ++ + L + ++ + +
Sbjct: 236 QGIDQATADMLTACSNECKDVANAIMAACPGNDLSDVKDIYQWYLEYYHEDIQDDHDLYH 295
Query: 390 RLGSGEKLDDILSSMNQVAEGVSTA------------GAVI--ALAQKYNVKMPVLTAVA 435
+ + + ++ + V GV+ G ++ +A V +P +
Sbjct: 296 AITTNKSYKGLVHPVKAVDGGVAPDFGNRYLTEDIPMGMIVFKGVAIAAGVAIPSNDKLI 355
Query: 436 RI 437
Sbjct: 356 MW 357
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 3e-11
Identities = 52/351 (14%), Positives = 97/351 (27%), Gaps = 84/351 (23%)
Query: 12 FLNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSA------TTNNNN 65
I + HI + + L +TL S N
Sbjct: 41 MPKSILSKEEID------HI----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 66 DNTIITPYPDDP-DPEPVSAVSSEIRTRDGRDRRKIVK--VAWEKLVRWSRTWRSKAKTD 122
+++P + P ++ + E R R D + K V+ + R +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---- 146
Query: 123 ILERTNKVVVLGGGSFG-TAMAAHVANKKSQL-----KVY------------MLMRDPAV 164
L V++ G G T +A V K++ +L +
Sbjct: 147 -LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 165 CQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADY--CL----------HAMPVQF 211
I+ + R + + + LL Y CL
Sbjct: 206 LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 212 SSSFL-----EGISDYVDPG----LPFISLSKGLEL-NTLRMMSQII---PQALRNPRQP 258
S L + ++D++ + S L ++ + + PQ L PR+
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PRE- 321
Query: 259 FIALSGPSFALELMNKLPTAMVVASKDRKLA--NAVQQLLASKHLRISTSS 307
L+ L +++ S LA + + + K I SS
Sbjct: 322 --VLTTNPRRL--------SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
|
| >1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 483 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-05
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 129 KVVVLGGGSFGTA----MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP 184
K+ ++G GS A + S+ ++ M D + +Y E P
Sbjct: 14 KISIIGAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNSP 73
Query: 185 ENVIATTDAKTALLGADYCLHAMPVQ 210
++ T+ A+ GAD+ ++
Sbjct: 74 VKIVKTSSLDEAIDGADFIINTAYPY 99
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 6e-05
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 121 TDILERTNKVVVLGGGSFGTA------MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN 174
+D +++ K+ +GGGS T + + +L + + I
Sbjct: 1 SDAMDKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEK-LEIVGALAK 59
Query: 175 CRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209
R + +P + T D + AL GAD+ V
Sbjct: 60 -RMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRV 93
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 460 | |||
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 100.0 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 100.0 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 100.0 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 100.0 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 100.0 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 100.0 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 100.0 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 100.0 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 100.0 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 100.0 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.98 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.97 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.96 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.96 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.96 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.95 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.95 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.95 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.94 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.94 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.94 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.94 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.94 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.94 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.93 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.93 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.93 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.93 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.92 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.92 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.92 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.92 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.92 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.91 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.91 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.91 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.91 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.9 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.9 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.9 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.89 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.88 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.88 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.88 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.88 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.87 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.87 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.86 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.86 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.86 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.86 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.85 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.85 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.84 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.82 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.79 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.78 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.76 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.75 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.73 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.72 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.72 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.72 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.69 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.67 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.66 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.64 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.64 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.61 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.6 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.59 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.58 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.57 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.57 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.55 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.54 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.53 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.52 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.21 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.45 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.44 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.44 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.43 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.42 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.42 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.42 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.42 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.41 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.41 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.41 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.4 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.39 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.37 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.37 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.36 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.36 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.36 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.35 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.35 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.35 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.35 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.34 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.34 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.33 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.32 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.32 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.31 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.3 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.3 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.29 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.29 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.29 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 99.28 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.28 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.28 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.28 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.25 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.24 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.22 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.15 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.13 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.08 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 99.01 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.96 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.95 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.91 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.87 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.78 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.77 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.77 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.73 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.72 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.71 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.7 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.7 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.69 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.69 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.68 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.63 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.61 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.56 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.55 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.54 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.54 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.52 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.51 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.48 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.47 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.46 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.46 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.44 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.44 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.43 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.42 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.41 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.4 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.38 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.38 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.37 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.36 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.35 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.34 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.33 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.32 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.32 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.3 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.3 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.27 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.26 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.25 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.24 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.24 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.23 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.22 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.21 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.2 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.2 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.19 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.19 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.17 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.16 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.15 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.15 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.15 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.14 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.13 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.12 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.09 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.08 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.08 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.07 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.07 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.07 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.07 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.07 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.06 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.05 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.03 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.03 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.03 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.03 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.02 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.02 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.01 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.0 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.0 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.0 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.98 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.97 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.97 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.95 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.93 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.92 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.91 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.9 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.9 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.9 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.88 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.87 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.86 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.85 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.84 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.84 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.8 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.78 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.78 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.78 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.77 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.76 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.75 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.74 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.73 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.73 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.72 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.67 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.67 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.66 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.66 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.64 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.63 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.63 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.62 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.6 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.59 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.58 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.57 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.57 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.55 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.54 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.52 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.51 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.51 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.51 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.51 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.51 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.5 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.5 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.49 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.48 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.45 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.44 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.4 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.37 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.36 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.35 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.34 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.33 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.33 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.33 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.32 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.31 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.31 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.31 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 97.3 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.28 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.27 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.27 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.26 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.26 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.24 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.23 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.23 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.22 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.22 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.2 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.2 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.19 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.16 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.15 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.14 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.13 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.13 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.11 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.05 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.02 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.98 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.97 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.97 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.96 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.96 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.96 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.95 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.95 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.94 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.93 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.92 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.9 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.87 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.85 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.85 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 96.84 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.83 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.82 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.81 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.81 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.79 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.79 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 96.79 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.79 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.77 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.74 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.74 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 96.72 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.72 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.72 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.69 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.67 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.63 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.62 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.62 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.55 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 96.48 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.48 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.43 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.41 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.41 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.37 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.33 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.3 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 96.29 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.29 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.29 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.29 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.28 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.28 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.27 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.27 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.14 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.06 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.01 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.97 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.95 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.89 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.86 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.84 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.83 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.82 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.79 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.79 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.77 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.63 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.6 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.59 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.58 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.58 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.57 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 95.53 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.51 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.5 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.49 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.49 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.48 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.47 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 95.44 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.41 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.4 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 95.31 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.26 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.19 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 95.17 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.16 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.13 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.1 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.09 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 95.08 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.07 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.01 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.88 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 94.86 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 94.85 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 94.78 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 94.73 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 94.69 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 94.65 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 94.63 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 94.63 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 94.63 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 94.62 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.61 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 94.54 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 94.54 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.54 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 94.51 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 94.44 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 94.43 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 94.42 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 94.38 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 94.37 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 94.37 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 94.34 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.33 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.23 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 94.23 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 94.21 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 94.2 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 94.19 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.16 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 94.1 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 94.07 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.05 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 94.01 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 93.98 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 93.96 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 93.92 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.91 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 93.89 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.88 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 93.86 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.83 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 93.8 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 93.78 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.75 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 93.75 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 93.73 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 93.64 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.62 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 93.59 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 93.57 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 93.56 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 93.51 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 93.46 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 93.4 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 93.4 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 93.38 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 93.36 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.34 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 93.31 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 93.27 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.23 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 93.21 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 93.21 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.18 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.09 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 93.09 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 93.07 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 93.06 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.99 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 92.96 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 92.93 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 92.93 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 92.89 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 92.89 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 92.85 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 92.83 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.81 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.8 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 92.8 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 92.77 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 92.76 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.75 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 92.75 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 92.73 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 92.71 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 92.66 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 92.65 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.65 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 92.64 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 92.63 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 92.62 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 92.6 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 92.57 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 92.54 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 92.52 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.52 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 92.5 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 92.5 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 92.48 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 92.48 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.48 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 92.48 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 92.47 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 92.47 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 92.46 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 92.46 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 92.44 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 92.44 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 92.38 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 92.37 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 92.36 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 92.35 |
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=449.12 Aligned_cols=328 Identities=34% Similarity=0.551 Sum_probs=311.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+|||+|||+|+||+++|..|+++| ++|++|+|++++++.+++.|.+..|+++..++.++.+++|++++++++|+||++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G--~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVila 106 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKG--QKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIV 106 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTT--CCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEEC
T ss_pred CCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEEC
Confidence 589999999999999999999999 999999999999999999998888999999999999999999989999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~ 286 (460)
||++.++++++++.++++++++||+++||+.+++ +.+++.+.+.++. .++.+++||+++.++..+.++.+++++.+.
T Consensus 107 Vp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t-~~~se~i~~~l~~--~~~~vlsgP~~a~ev~~g~pt~~via~~~~ 183 (356)
T 3k96_A 107 VPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVATELGQ--VPMAVISGPSLATEVAANLPTAVSLASNNS 183 (356)
T ss_dssp CCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTT-BCHHHHHHHHHCS--CCEEEEESSCCHHHHHTTCCEEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCc-cCHHHHHHHHcCC--CCEEEEECccHHHHHHcCCCeEEEEecCCH
Confidence 9999999999999999999999999999999988 8899999988874 367899999999999999999888999999
Q ss_pred HHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
+..++++++|+..+++++.++|+.+++|++++||++++++|+++++++++|...+++.++++|+.++++++|+++++|++
T Consensus 184 ~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~g 263 (356)
T 3k96_A 184 QFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTG 263 (356)
T ss_dssp HHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred HHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHH
Q 012596 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK 446 (460)
Q Consensus 367 ~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~ 446 (460)
++|+||+++||+++.+|||++|..+++|++++++.+.+++++||+++++.++++|+++|+++|+.+++|+++.++.+|++
T Consensus 264 l~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~~~~~~~~ 343 (356)
T 3k96_A 264 LAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILHEDLDPQQ 343 (356)
T ss_dssp TTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCCCHHH
T ss_pred cchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccC
Q 012596 447 AVLELMSLPQVEE 459 (460)
Q Consensus 447 ~~~~l~~~~~~~~ 459 (460)
+++.|++||.+.|
T Consensus 344 ~~~~l~~r~~~~e 356 (356)
T 3k96_A 344 AVQELLERSPKAE 356 (356)
T ss_dssp HHHHHHSCC----
T ss_pred HHHHHHcCCCCCC
Confidence 9999999999987
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-52 Score=423.44 Aligned_cols=330 Identities=28% Similarity=0.386 Sum_probs=295.3
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCC------CeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQ------LKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~------~~V~v~~r~~~-----~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
++..||+|||+|+||+++|..|+++|++ ++|++|.|+++ ..+.+++.+.|.+|+|++.+|+++.+++|+
T Consensus 32 ~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl 111 (391)
T 4fgw_A 32 EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDL 111 (391)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCH
Confidence 3457999999999999999999998721 25999999865 477888889999999999999999999999
Q ss_pred HhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchh--hhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012596 194 KTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL--RMMSQIIPQALRNPRQPFIALSGPSFALEL 271 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~--~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~ 271 (460)
.++++++|+||++||++.++++++++.++++++.++|+++||+++++. +.+++.+.+.++. ++++++||+++.|+
T Consensus 112 ~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~---~~~vLsGPs~A~EV 188 (391)
T 4fgw_A 112 IDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGI---QCGALSGANIATEV 188 (391)
T ss_dssp HHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCC---EEEEEECSCCHHHH
T ss_pred HHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCc---cceeccCCchHHHh
Confidence 999999999999999999999999999999999999999999987653 5789999988774 57899999999999
Q ss_pred hccCCeEEEEccCCHH---------HHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Q 012596 272 MNKLPTAMVVASKDRK---------LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL 342 (460)
Q Consensus 272 ~~g~~~~i~i~~~d~~---------~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al 342 (460)
+.+.++.+++++.+.+ ..+.++++|....|+++.++|+.|+|+++++||++|+++|+++|+++|+|...++
T Consensus 189 a~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAAL 268 (391)
T 4fgw_A 189 AQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAI 268 (391)
T ss_dssp HTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 9999999988865432 3577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc---CCCccccccccCCCceeeecccCCCccchHHHHhh-CCCChHHHHhhc--ccceehhhhHHH
Q 012596 343 VAQGCSEIRWLATKM---GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM--NQVAEGVSTAGA 416 (460)
Q Consensus 343 ~~~~~~E~~~la~a~---Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~-~g~~~e~~~~~~--~~~~eg~kd~g~ 416 (460)
+.++++||.+|++++ |.++.+|.+++|+||+++||++ +|||++|..++ +|++.+++.+.+ ++++||.+.++.
T Consensus 269 itrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~s--SRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta~~ 346 (391)
T 4fgw_A 269 QRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAG--GRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKE 346 (391)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHS--SHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecC--CccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHHHH
Confidence 999999999999998 5556667789999999999998 99999999998 599998888877 789999999999
Q ss_pred HHHHHHHcCC--CChHHHHHHHHHhcCCCHHHHHHHHhcCCCccC
Q 012596 417 VIALAQKYNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQVEE 459 (460)
Q Consensus 417 vv~lA~~~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~~~~ 459 (460)
++++++++|+ +||+.+++|++|+++.+|+++.+.++.++..+|
T Consensus 347 v~~l~~~~~v~~emPI~~~vy~IL~~~~~~~~~~~~l~~~~~~eE 391 (391)
T 4fgw_A 347 VHEWLETCGSVEDFPLFEAVYQIVYNNYPMKNLPDMIEELDLHED 391 (391)
T ss_dssp HHHHHHHHTCSTTCHHHHHHHHHHHSCCCSTTHHHHHCC------
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHhCCCCHHHHHHHHHhcccCCC
Confidence 9999999999 899999999999999999999999999888876
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=374.42 Aligned_cols=343 Identities=35% Similarity=0.545 Sum_probs=295.7
Q ss_pred eeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCC
Q 012596 113 RTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD 192 (460)
Q Consensus 113 ~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~ 192 (460)
++|++....+.| +||||+|||+|+||++||..|+++| ++|++|+|++++++.+++.+.+..++++..++.++.++++
T Consensus 2 ~~~~~~~~~~~m-~M~kI~iIG~G~mG~~la~~L~~~G--~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (366)
T 1evy_A 2 STKQHSAKDELL-YLNKAVVFGSGAFGTALAMVLSKKC--REVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSD 78 (366)
T ss_dssp -------CCCCC-CEEEEEEECCSHHHHHHHHHHTTTE--EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESC
T ss_pred ccchhhhhhHhh-ccCeEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCC
Confidence 456653333443 4459999999999999999999999 9999999999999999988777677777666767888889
Q ss_pred HHhhcCCCcEEEEccchhcHHHHHHH----hhhcCCC-CCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECccc
Q 012596 193 AKTALLGADYCLHAMPVQFSSSFLEG----ISDYVDP-GLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF 267 (460)
Q Consensus 193 ~~ea~~~aDiVilaVp~~~~~~vl~~----i~~~l~~-~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~ 267 (460)
+.++++++|+||+|||++++.+++++ +.+.+++ +++||+++||+.+++.+.+.+.+.+.+|. .++.++.||.+
T Consensus 79 ~~~~~~~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~--~~~~v~~gp~~ 156 (366)
T 1evy_A 79 VEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPS--PLLSVLAGPSF 156 (366)
T ss_dssp HHHHHTTCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCG--GGEEEEESSCC
T ss_pred HHHHHcCCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCC--CcEEEEeCCCh
Confidence 98888999999999999999999998 9888888 89999999999987666777777765553 24678999999
Q ss_pred HHHHhccCCeEEEEccCCHHHHHHHHHHHhcC--CceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Q 012596 268 ALELMNKLPTAMVVASKDRKLANAVQQLLASK--HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQ 345 (460)
Q Consensus 268 a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~--g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~ 345 (460)
+.++..+.++.+.+++.+.+..++++++|+.. +++++.++|+.+.+|+++++|++++++|+..++++++|...+++..
T Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~ 236 (366)
T 1evy_A 157 AIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMR 236 (366)
T ss_dssp HHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhCCceEEEEecCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHH
Confidence 99887887777777888889999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcC
Q 012596 346 GCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYN 425 (460)
Q Consensus 346 ~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~g 425 (460)
+++|+..++++.|++++++.++.+.++.+.++.+..++++++++++.+|++.+++.+++++..|+.+|+++++++|+++|
T Consensus 237 ~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~g 316 (366)
T 1evy_A 237 GLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLK 316 (366)
T ss_dssp HHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHHHHHHHHHHHhC
Confidence 99999999999999998888776777777677777778888899999999888887777788999999999999999999
Q ss_pred CCChHHHHHHHHHhcCCCHHHHHHHHhcCCCccCC
Q 012596 426 VKMPVLTAVARIIDNELTPKKAVLELMSLPQVEEV 460 (460)
Q Consensus 426 v~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~~~~~ 460 (460)
+++|+++.+|++++.+.+|+++++.|++||.+.|+
T Consensus 317 v~~P~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 351 (366)
T 1evy_A 317 VKMPLCHQIYEIVYKKKNPRDALADLLSCGLQDEG 351 (366)
T ss_dssp CCCHHHHHHHHHHHSCCCHHHHHHHHGGGCSCCCC
T ss_pred CCCcHHHHHHHHHHCCCCHHHHHHHHHcCCccccc
Confidence 99999999999999999999999999999998873
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-44 Score=358.70 Aligned_cols=318 Identities=36% Similarity=0.524 Sum_probs=279.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.|||+|||+|+||++||..|+++| ++|++|+|++++++.+++.|.+. |+++..+ ++.+++++++ ++++|+||+|
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G--~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~--~~~~~~~~~~-~~~aDvVil~ 87 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENG--EEVILWARRKEIVDLINVSHTSP-YVEESKI--TVRATNDLEE-IKKEDILVIA 87 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHSCBT-TBTTCCC--CSEEESCGGG-CCTTEEEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhCCcc-cCCCCee--eEEEeCCHHH-hcCCCEEEEE
Confidence 589999999999999999999999 99999999999999999988665 6666554 5677888888 8899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~ 286 (460)
||+++++++++++.+ +++++|+++||+.+++.+.+++.+.+.++ ....++.||+++.++..|.++.+.+++.+
T Consensus 88 vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~~g~~~- 160 (335)
T 1z82_A 88 IPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG---CPYAVLSGPSHAEEVAKKLPTAVTLAGEN- 160 (335)
T ss_dssp SCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC---CCEEEEESSCCHHHHHTTCCEEEEEEETT-
T ss_pred CCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC---CceEEEECCccHHHHhCCCceEEEEEehh-
Confidence 999999999988876 68999999999998776778888877654 35788999999998888877666677655
Q ss_pred HHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
.+.++++|+..+++++.++|+.+.+|+|+++|++++++|+..++++++|...+++..++.|+..++++.|++++++.+
T Consensus 161 --~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~ 238 (335)
T 1z82_A 161 --SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMG 238 (335)
T ss_dssp --HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred --HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence 789999999999999999999999999999999999999999999999998999999999999999999999988888
Q ss_pred ccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHH
Q 012596 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK 446 (460)
Q Consensus 367 ~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~ 446 (460)
+.++++.+.++.+..++|+++++++.+|++.+++.+..+++.|+.+++++++++|+++|+++|++++++++++.+.++++
T Consensus 239 l~~~~~~~~t~~s~~~~n~~~~~~~~~g~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~~~~~~~ 318 (335)
T 1z82_A 239 LAGIGDLMVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVYEGKPPLQ 318 (335)
T ss_dssp TTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCCCHHH
T ss_pred cccccceeeeccCccCcHHHHHHHHhCCCCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCCHHH
Confidence 77777777777777788888888888888888887777889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccC
Q 012596 447 AVLELMSLPQVEE 459 (460)
Q Consensus 447 ~~~~l~~~~~~~~ 459 (460)
+++.|++||.+.|
T Consensus 319 ~~~~l~~~~~~~~ 331 (335)
T 1z82_A 319 SMRDLMRRSLKDE 331 (335)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHcCCcccc
Confidence 9999999999887
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=363.78 Aligned_cols=326 Identities=24% Similarity=0.388 Sum_probs=293.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G-----~~~~V~v~~r~~~-----~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (460)
||||+|||+|+||++||..|+++| ++++|++|+|+++ +++.+++.+.+..|+++..++.++.++++++++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea 100 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV 100 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence 479999999999999999999886 1268999999998 899998888777788887777788888899888
Q ss_pred cCCCcEEEEccchhcHHHHHHHhhh----cCCCCCeEEEeccCCcc--chhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012596 197 LLGADYCLHAMPVQFSSSFLEGISD----YVDPGLPFISLSKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALE 270 (460)
Q Consensus 197 ~~~aDiVilaVp~~~~~~vl~~i~~----~l~~~~iIV~~~~Gi~~--~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e 270 (460)
++++|+||+|||+++++++++++.+ .+++++++|+++||+.+ ++.+.+++.+.+.++ .++.++.||.++.+
T Consensus 101 ~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~ 177 (375)
T 1yj8_A 101 INDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN---IPCSALSGANIAMD 177 (375)
T ss_dssp HTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS---SCEEEEECSCCHHH
T ss_pred HcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC---CCEEEEeCCchHHH
Confidence 8999999999999999999999998 89999999999999988 344577788877665 35778999999998
Q ss_pred HhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012596 271 LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350 (460)
Q Consensus 271 ~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~ 350 (460)
+..+.++.+.+++.+.+..++++++|+..+++++.++|+.+.+|+|+++|++++++|+..++++++|...+++..+++|+
T Consensus 178 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~ 257 (375)
T 1yj8_A 178 VAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM 257 (375)
T ss_dssp HHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Confidence 88888877778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc--CCCccccccccCCCceeeecccCCCccchHHHHhhC-C--CChHHHHhhc--ccceehhhhHHHHHHHHHH
Q 012596 351 RWLATKM--GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-G--EKLDDILSSM--NQVAEGVSTAGAVIALAQK 423 (460)
Q Consensus 351 ~~la~a~--Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~-g--~~~e~~~~~~--~~~~eg~kd~g~vv~lA~~ 423 (460)
.+++++. |++++++.++++++|++.+|.+ +++++++..+.+ | ++.+++.+.+ ++..|+.+++++++++|++
T Consensus 258 ~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~--~~~~~~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~~ 335 (375)
T 1yj8_A 258 ILFGKVFFQKFNENILLESCGFADIITSFLA--GRNAKCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKE 335 (375)
T ss_dssp HHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS--SSHHHHHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCcchhhccccccceeEeeeC--CccHHHHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHHH
Confidence 9999999 6999999998899999888887 688888888877 7 6778887756 8899999999999999999
Q ss_pred cCC--CChHHHHHHHHHhcCCCHHHHHHHHhcCCCc
Q 012596 424 YNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQV 457 (460)
Q Consensus 424 ~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~~ 457 (460)
+|+ ++|+++++|++++++.+|+++++.|++||..
T Consensus 336 ~gv~~~~P~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 371 (375)
T 1yj8_A 336 KNMTNEFPLFTVLHKISFENEDPSSLLKTFMNNKIN 371 (375)
T ss_dssp TTCGGGCHHHHHHHHHHHSCCCTTHHHHHHSSCCCC
T ss_pred hCCCCCCCHHHHHHHHHhCCCCHHHHHHHHHcCcHh
Confidence 999 9999999999999999999999999999864
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-43 Score=352.83 Aligned_cols=326 Identities=28% Similarity=0.462 Sum_probs=288.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCC-----CCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKS-----QLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~-----~~~V~v~~r~~~-----~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
.+|||+|||+|+||++||..|+++|. +++|++|+|+++ +.+.+++.+.+..++++..++.++.+++++++
T Consensus 7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T 1x0v_A 7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ 86 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence 35799999999999999999998861 168999999998 88889887776667666666667888889988
Q ss_pred hcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc--chhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhc
Q 012596 196 ALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMN 273 (460)
Q Consensus 196 a~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~--~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~ 273 (460)
+++++|+||+|||++.++++++++.+.++++++||+++||+.. ++.+.+.+.+.+.+| .+..++.||.++.++..
T Consensus 87 ~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~ 163 (354)
T 1x0v_A 87 AAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG---IPMSVLMGANIASEVAD 163 (354)
T ss_dssp HHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT---CCEEEEECSCCHHHHHT
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC---CCEEEEECCCcHHHHHh
Confidence 8899999999999999999999999999999999999999984 444567777777665 35779999999998888
Q ss_pred cCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHH
Q 012596 274 KLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL 353 (460)
Q Consensus 274 g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~l 353 (460)
+.++.+.+++.+.+..++++++|+..+++++.++|+.+.+|+|+++|++++++|+..++++++|...+++..+++|+.++
T Consensus 164 g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~l 243 (354)
T 1x0v_A 164 EKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF 243 (354)
T ss_dssp TCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 87777778888889999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHcCC---CccccccccCCCceeeecccCCCccchHHHHhhC-CCChHHHHhhc--ccceehhhhHHHHHHHHHHcCC-
Q 012596 354 ATKMGA---KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSSM--NQVAEGVSTAGAVIALAQKYNV- 426 (460)
Q Consensus 354 a~a~Gi---~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~-g~~~e~~~~~~--~~~~eg~kd~g~vv~lA~~~gv- 426 (460)
|++.|+ +++++.++++++|++.+|.+ +++++++.++.+ |++.+++.+.+ ++..|+.+++++++++|+++|+
T Consensus 244 a~a~G~~~~~~~~~~~~~g~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~gv~ 321 (354)
T 1x0v_A 244 AKLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLV 321 (354)
T ss_dssp HHHHSSSCCCGGGGGSTTTHHHHHHHHHH--CHHHHHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHhcCCCCCcccccccchHHHHHHhhcc--cccHHHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHHHhCCC
Confidence 999999 89999888888888887776 678888888876 78887777654 7899999999999999999999
Q ss_pred -CChHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012596 427 -KMPVLTAVARIIDNELTPKKAVLELMSLPQ 456 (460)
Q Consensus 427 -~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~ 456 (460)
++|+++++|++++.+.+|+++++.|++||.
T Consensus 322 ~~~P~~~~v~~~~~~~~~~~~~~~~l~~~~~ 352 (354)
T 1x0v_A 322 DKFPLFMAVYKVCYEGQPVGEFIHCLQNHPE 352 (354)
T ss_dssp GGSHHHHHHHHHHHSCCCGGGTHHHHHTCCS
T ss_pred CCCCHHHHHHHHHhCCCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999974
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=316.56 Aligned_cols=318 Identities=25% Similarity=0.362 Sum_probs=266.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCcEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r--~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiV 203 (460)
|||+|||+|+||+++|..|+++| ++|++|+| ++++++.+++.|.+..+ +..+ .++.+++ ++.++++++|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~~~~~~~~~D~v 75 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGTEFDTEILKSISAGREHPRL--GVKL-NGVEIFWPEQLEKCLENAEVV 75 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC--CEEEEECCGGGHHHHHHHHTTCCBTTT--TBCC-CSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHhCcCccc--Cccc-cceEEecHHhHHHHHhcCCEE
Confidence 68999999999999999999999 99999999 99899999887654333 2222 3456666 777878999999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCC---ccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL---ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV 280 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi---~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~ 280 (460)
|+|||++++.++++++.+ ++++++||+++||+ .+++.+.+.+.+.+.+|.. ....+..||.++.+...+.++.++
T Consensus 76 i~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~-~~~~~~~~p~~~~~~~~g~~~~~~ 153 (335)
T 1txg_A 76 LLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLR-ERTVAITGPAIAREVAKRMPTTVV 153 (335)
T ss_dssp EECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCG-GGEEEEESSCCHHHHHTTCCEEEE
T ss_pred EEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCC-CcEEEEECCCcHHHHHccCCcEEE
Confidence 999999999999999999 98899999999999 6555556666665533431 246789999999887777766677
Q ss_pred EccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHHHHHHHHH
Q 012596 281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSEIRWLAT 355 (460)
Q Consensus 281 i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~-----~n~~~al~~~~~~E~~~la~ 355 (460)
+++.+.+..+.++++|+..|++++..+|+.+.+|.|+++|++.+++|+..+++++ +|....++..+++|+..+++
T Consensus 154 ~~~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~ 233 (335)
T 1txg_A 154 FSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIE 233 (335)
T ss_dssp EECSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8887888999999999999999999999999999999999999998988888888 88888999999999999999
Q ss_pred HcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcc----cceehhhhHHHHHHHHHHcCCCChHH
Q 012596 356 KMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMN----QVAEGVSTAGAVIALAQKYNVKMPVL 431 (460)
Q Consensus 356 a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~----~~~eg~kd~g~vv~lA~~~gv~~P~~ 431 (460)
++|++++++.++.++++.+.++.+ ++++.++.++..|++.......++ +..|+.+++++++++|+++|+++|++
T Consensus 234 ~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P~~ 311 (335)
T 1txg_A 234 ILGGDRETAFGLSGFGDLIATFRG--GRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLL 311 (335)
T ss_dssp HHTSCGGGGGSTTTHHHHHHTTTC--HHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHCCCcchhhcccchhheeecccc--CccHHHHHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCcHH
Confidence 999999888776666666655554 566667777777777653333334 67899999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcC
Q 012596 432 TAVARIIDNELTPKKAVLELMSL 454 (460)
Q Consensus 432 ~~v~~ll~~~~~~~~~~~~l~~~ 454 (460)
+.+|++++.+.+|.++++.|++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~ 334 (335)
T 1txg_A 312 DSIYRVLYEGLKVEEVLFELATF 334 (335)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHcC
Confidence 99999999999999999999864
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=279.68 Aligned_cols=291 Identities=15% Similarity=0.192 Sum_probs=219.0
Q ss_pred chhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 121 TDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 121 ~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
.+.+..+|||+|||+|+||+++|..|+++| ++|++| +++++++.+++.|.+.. .++..++.++.+++++++ ++++
T Consensus 13 ~~~~~~~~kI~IiGaGa~G~~~a~~L~~~G--~~V~l~-~~~~~~~~i~~~g~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 87 (318)
T 3hwr_A 13 ENLYFQGMKVAIMGAGAVGCYYGGMLARAG--HEVILI-ARPQHVQAIEATGLRLE-TQSFDEQVKVSASSDPSA-VQGA 87 (318)
T ss_dssp -------CEEEEESCSHHHHHHHHHHHHTT--CEEEEE-CCHHHHHHHHHHCEEEE-CSSCEEEECCEEESCGGG-GTTC
T ss_pred hhhhccCCcEEEECcCHHHHHHHHHHHHCC--CeEEEE-EcHhHHHHHHhCCeEEE-cCCCcEEEeeeeeCCHHH-cCCC
Confidence 345556799999999999999999999999 999999 99999999998886544 234445556677778765 5899
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHH-HHHhCCCCCCEEEEECcccHHHHhccCCeEE
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII-PQALRNPRQPFIALSGPSFALELMNKLPTAM 279 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l-~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i 279 (460)
|+||+|||+++++++++++.++++++++||+++||++.+. .+.+.+ .+.++......+++.||+++.+...|. +
T Consensus 88 D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~---~ 162 (318)
T 3hwr_A 88 DLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENAD--TLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGE---L 162 (318)
T ss_dssp SEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH--HHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEE---E
T ss_pred CEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH--HHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCce---E
Confidence 9999999999999999999999999999999999998752 333333 122211111235678999888765553 3
Q ss_pred EEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHH
Q 012596 280 VVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLAT 355 (460)
Q Consensus 280 ~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~----~n~~~al~~~~~~E~~~la~ 355 (460)
.++. .+..+.++++|+..+++++.++|+.+.+|.|+++|+..++.+...+..++ +.....++..++.|+.++++
T Consensus 163 ~ig~--~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~ 240 (318)
T 3hwr_A 163 VIEP--TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVAR 240 (318)
T ss_dssp EECC--CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHH
T ss_pred EEcC--CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHH
Confidence 4665 34568899999999999999999999999999999988887877776654 33467899999999999999
Q ss_pred HcCCCccc-cccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHH
Q 012596 356 KMGAKPAT-ITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA 433 (460)
Q Consensus 356 a~Gi~~~~-~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~ 433 (460)
+.|++++. +.+. .+..+... ..++ +|.+|+.+|+++| ....+|+++++|+++|+++|++++
T Consensus 241 a~G~~l~~~~~~~-----~~~~~~~~-~~~~sSM~qD~~~gr~tE-----------id~i~G~vv~~a~~~gv~tP~~~~ 303 (318)
T 3hwr_A 241 AEGVKLPDDVALA-----IRRIAETM-PRQSSSTAQDLARGKRSE-----------IDHLNGLIVRRGDALGIPVPANRV 303 (318)
T ss_dssp HTTCCCCTTHHHH-----HHHHHHHS-TTCCCHHHHHHHTTCCCS-----------GGGTHHHHHHHHHHTTCCCHHHHH
T ss_pred HcCCCCChHHHHH-----HHHHHHhc-CCCCcHHHHHHHcCChhH-----------HHHHHHHHHHHHHHhCCCCcHHHH
Confidence 99998532 1110 00001111 1232 5678888877664 346789999999999999999999
Q ss_pred HHHHHhc
Q 012596 434 VARIIDN 440 (460)
Q Consensus 434 v~~ll~~ 440 (460)
+|++++.
T Consensus 304 l~~ll~~ 310 (318)
T 3hwr_A 304 LHALVRL 310 (318)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=278.55 Aligned_cols=283 Identities=15% Similarity=0.184 Sum_probs=213.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccC-CCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF-PEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~-~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+|||+|||+|+||+++|..|+++| ++|++|+|++ .+.+++.|.+..+. ++..++ .+.+++++++ ++.+|+||+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~-~~~~~~~~~~-~~~~D~vil 75 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSG--EDVHFLLRRD--YEAIAGNGLKVFSINGDFTLP-HVKGYRAPEE-IGPMDLVLV 75 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTS--CCEEEECSTT--HHHHHHTCEEEEETTCCEEES-CCCEESCHHH-HCCCSEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC--CeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEe-eceeecCHHH-cCCCCEEEE
Confidence 479999999999999999999999 8999999986 47888877654432 222232 3456677766 589999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC------CEEEEECcccHHHHhccCCeEE
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ------PFIALSGPSFALELMNKLPTAM 279 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~------~~~v~~gP~~a~e~~~g~~~~i 279 (460)
|||+++++++++.+.+++.++++||+++||+++. +.+.+.++...+ ..+.+.||+++.+... ..+
T Consensus 76 avk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~------~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~---g~~ 146 (312)
T 3hn2_A 76 GLKTFANSRYEELIRPLVEEGTQILTLQNGLGNE------EALATLFGAERIIGGVAFLCSNRGEPGEVHHLGA---GRI 146 (312)
T ss_dssp CCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHH------HHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEE---EEE
T ss_pred ecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcH------HHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCC---CeE
Confidence 9999999999999999999999999999999864 234444443111 1123456777664332 344
Q ss_pred EEcc---CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHH
Q 012596 280 VVAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRW 352 (460)
Q Consensus 280 ~i~~---~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~----~n~~~al~~~~~~E~~~ 352 (460)
.++. .+.+..+.+.++|+..+++++.++|+.+.+|.|+++|+..++.+...+..+| ++....++.+++.|+.+
T Consensus 147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~ 226 (312)
T 3hn2_A 147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIA 226 (312)
T ss_dssp EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHH
Confidence 5653 3467789999999999999999999999999999999987777766666544 56778999999999999
Q ss_pred HHHHcC--CCcc-ccccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCC
Q 012596 353 LATKMG--AKPA-TITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428 (460)
Q Consensus 353 la~a~G--i~~~-~~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~ 428 (460)
+++++| ++.+ .+. +.+..+....++++ +|.+|+.+|+++| .+..+|+++++|+++|+++
T Consensus 227 va~a~G~~~~~~~~~~------~~~~~~~~~~~~~~sSM~qD~~~gr~tE-----------id~i~G~vv~~a~~~gv~~ 289 (312)
T 3hn2_A 227 GANAQGLATFIADGYV------DDMLEFTDAMGEYKPSMEIDREEGRPLE-----------IAAIFRTPLAYGAREGIAM 289 (312)
T ss_dssp HHHTSCCSSCCCTTHH------HHHHHHHTTSCSCCCHHHHHHHTTCCCC-----------HHHHTHHHHHHHHHTTCCC
T ss_pred HHHHcCCccCCCHHHH------HHHHHHHhcCCCCCchHHHHHHhCCCcc-----------HHHHhhHHHHHHHHhCCCC
Confidence 999999 7743 221 22222222223444 5678888777654 4467899999999999999
Q ss_pred hHHHHHHHHHhcC
Q 012596 429 PVLTAVARIIDNE 441 (460)
Q Consensus 429 P~~~~v~~ll~~~ 441 (460)
|+++++|++++..
T Consensus 290 P~~~~l~~ll~~~ 302 (312)
T 3hn2_A 290 PRVEMLATLLEQA 302 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999753
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-33 Score=277.61 Aligned_cols=281 Identities=15% Similarity=0.197 Sum_probs=209.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCc--cCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR--YFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~--~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+|||+|||+|+||+++|..|+++| ++|++|+|++ .+.+++.|.... +.++..++ .+.++++++++.+++|+||
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~-~~~~~~~~~~~~~~~DlVi 76 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTG--HCVSVVSRSD--YETVKAKGIRIRSATLGDYTFR-PAAVVRSAAELETKPDCTL 76 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTT--CEEEEECSTT--HHHHHHHCEEEEETTTCCEEEC-CSCEESCGGGCSSCCSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEe-eeeeECCHHHcCCCCCEEE
Confidence 389999999999999999999999 9999999987 378888775332 34444443 3556778877666899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccH-------HHHhccCCe
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA-------LELMNKLPT 277 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a-------~e~~~g~~~ 277 (460)
+|||++++.++++.+.++++++++||+++||+++. +.+.+.++.. .++.|+.+. .++..+.+.
T Consensus 77 lavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~------~~l~~~~~~~----~vl~g~~~~~a~~~~pg~v~~~~~~ 146 (320)
T 3i83_A 77 LCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE------PEVAAAFPDN----EVISGLAFIGVTRTAPGEIWHQAYG 146 (320)
T ss_dssp ECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS------HHHHHHSTTS----CEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred EecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH------HHHHHHCCCC----cEEEEEEEeceEEcCCCEEEECCCC
Confidence 99999999999999999999999999999999875 3456666542 234444433 222222334
Q ss_pred EEEEc---cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHH
Q 012596 278 AMVVA---SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEI 350 (460)
Q Consensus 278 ~i~i~---~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~----~n~~~al~~~~~~E~ 350 (460)
.+.++ +.+.+..+.+.++|+..+++++.++|+.+.+|.|+++|+..+..++..+...+ ++. ..++.+++.|+
T Consensus 147 ~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~-~~l~~~~~~E~ 225 (320)
T 3i83_A 147 RLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQ-EGFVRAIMQEI 225 (320)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHC-HHHHHHHHHHH
T ss_pred EEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcH-HHHHHHHHHHH
Confidence 55665 34567889999999999999999999999999999999765444444443332 334 78999999999
Q ss_pred HHHHHHcCCCccc-cccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCC
Q 012596 351 RWLATKMGAKPAT-ITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428 (460)
Q Consensus 351 ~~la~a~Gi~~~~-~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~ 428 (460)
.++++++|++.+. +. +.+..+....+.++ +|.+|+.+|+++| .+..+|+++++|+++|+++
T Consensus 226 ~~va~a~G~~l~~~~~------~~~~~~~~~~~~~~sSM~qD~~~gr~tE-----------id~i~G~vv~~a~~~gv~~ 288 (320)
T 3i83_A 226 RAVAAANGHPLPEDIV------EKNVASTYKMPPYKTSMLVDFEAGQPME-----------TEVILGNAVRAGRRTRVAI 288 (320)
T ss_dssp HHHHHHTTCCCCTTHH------HHHHHHHHHSCCCCCHHHHHHHHTCCCC-----------HHHHTHHHHHHHHHTTCCC
T ss_pred HHHHHHcCCCCChHHH------HHHHHHHhcCCCCCCcHHHHHHhCCCch-----------HHHHccHHHHHHHHhCCCC
Confidence 9999999998542 21 11222222223333 4667777666553 4567899999999999999
Q ss_pred hHHHHHHHHHhc
Q 012596 429 PVLTAVARIIDN 440 (460)
Q Consensus 429 P~~~~v~~ll~~ 440 (460)
|+++++|++++.
T Consensus 289 P~~~~l~~~l~~ 300 (320)
T 3i83_A 289 PHLESVYALMKL 300 (320)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999974
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=275.63 Aligned_cols=290 Identities=15% Similarity=0.145 Sum_probs=212.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++|||+|||+|+||+++|..|+++| ++|++|+|+ ++.+.+++.|.+... ++...+.++.+++++++ ++++|+||+
T Consensus 2 ~~mkI~IiGaG~~G~~~a~~L~~~g--~~V~~~~r~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~D~Vil 76 (335)
T 3ghy_A 2 SLTRICIVGAGAVGGYLGARLALAG--EAINVLARG-ATLQALQTAGLRLTE-DGATHTLPVRATHDAAA-LGEQDVVIV 76 (335)
T ss_dssp CCCCEEEESCCHHHHHHHHHHHHTT--CCEEEECCH-HHHHHHHHTCEEEEE-TTEEEEECCEEESCHHH-HCCCSEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEECh-HHHHHHHHCCCEEec-CCCeEEEeeeEECCHHH-cCCCCEEEE
Confidence 4689999999999999999999999 899999996 678888887765432 23333344667778877 589999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCc--------cchhhh-----HHHHHHHHhCCCC------CCEEEEECcc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE--------LNTLRM-----MSQIIPQALRNPR------QPFIALSGPS 266 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~--------~~~~~~-----l~e~l~~~lg~~~------~~~~v~~gP~ 266 (460)
|||+++++++++++.+.++++++||+++||++ +.+.+. ..+.+.+.++... ...+.+.+|+
T Consensus 77 avk~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg 156 (335)
T 3ghy_A 77 AVKAPALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPG 156 (335)
T ss_dssp CCCHHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTT
T ss_pred eCCchhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCc
Confidence 99999999999999999999999999999974 111111 1134555554321 1124567788
Q ss_pred cHHHHhccCCeEEEEcc---CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHH----HHHHHHHHHHHhcccCCCcHH
Q 012596 267 FALELMNKLPTAMVVAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGAL----KNVLAIAAGIVVGMNLGNNSM 339 (460)
Q Consensus 267 ~a~e~~~g~~~~i~i~~---~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kal----kNv~ai~~g~~~~~kl~~n~~ 339 (460)
++.+...+ .+.++. .+.+..+.+.++|+..+++++.++|+.+..|.|++ +|++++.+|+..+..++++..
T Consensus 157 ~v~~~~~g---~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~ 233 (335)
T 3ghy_A 157 HIRHGNGR---RLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLV 233 (335)
T ss_dssp EEEECSCC---EEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHH
T ss_pred EEEECCCC---eEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHH
Confidence 77543322 345653 34577899999999999999999999999999977 466677777777777778888
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccc-hHHHHhhCCC-ChHHHHhhcccceehhhhHHHH
Q 012596 340 AALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGE-KLDDILSSMNQVAEGVSTAGAV 417 (460)
Q Consensus 340 ~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~-~~e~~~~~~~~~~eg~kd~g~v 417 (460)
.+++.++++|+.++++++|++++...+ ...........++ +|.+|+.+|+ ++ |....+|++
T Consensus 234 ~~l~~~~~~E~~~va~a~G~~~~~~~~------~~~~~~~~~~~~~sSM~qD~~~gr~~t-----------Eid~i~G~v 296 (335)
T 3ghy_A 234 SAFCLAVMAEAKAIGARIGCPIEQSGE------ARSAVTRQLGAFKTSMLQDAEAGRGPL-----------EIDALVASV 296 (335)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCSCHH------HHHHHHHTTCSCCCTTTC-----CCCC-----------CHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccHH------HHHHHHhccCCCCcHHHHHHHcCCCCc-----------hHHHHhhHH
Confidence 999999999999999999998643221 0111111112232 4556666666 55 345678999
Q ss_pred HHHHHHcCCCChHHHHHHHHHhc
Q 012596 418 IALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 418 v~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
+++|+++|+++|+++++|++++.
T Consensus 297 v~~a~~~gv~~P~~~~l~~li~~ 319 (335)
T 3ghy_A 297 REIGLHVGVPTPQIDTLLGLVRL 319 (335)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999974
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=256.07 Aligned_cols=288 Identities=17% Similarity=0.130 Sum_probs=206.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDi 202 (460)
+||||+|||+|+||+++|..|+++| ++|++|+|++++++.+++.|....+.++ .++.++.+++ ..++. +++|+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~d~ 77 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGG--NDVTLIDQWPAHIEAIRKNGLIADFNGE-EVVANLPIFS-PEEIDHQNEQVDL 77 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHCEEEEETTE-EEEECCCEEC-GGGCCTTSCCCSE
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhCCEEEEeCCC-eeEecceeec-chhhcccCCCCCE
Confidence 3689999999999999999999999 8999999999999999887654332211 1111223333 23333 38999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC------CCEEEEECcccHHHHhccCC
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLP 276 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~------~~~~v~~gP~~a~e~~~g~~ 276 (460)
||+|||++.+.++++++.+.++++++||+++||+... +.+.+.++... ...+.+.||+.+.+...|..
T Consensus 78 vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~------~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~ 151 (316)
T 2ew2_A 78 IIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHE------DVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEI 151 (316)
T ss_dssp EEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTH------HHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCE
T ss_pred EEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcH------HHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcE
Confidence 9999999999999999999999999999999998752 22333332210 01123567776554444443
Q ss_pred eEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc---C-CCcHHHHHHHHHHHHHHH
Q 012596 277 TAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN---L-GNNSMAALVAQGCSEIRW 352 (460)
Q Consensus 277 ~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k---l-~~n~~~al~~~~~~E~~~ 352 (460)
......+.+.+..+.++++|+..|+.+...+|+.+.+|.|+++|+...+.+...+.. + .+.....++..++.|+..
T Consensus 152 ~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~ 231 (316)
T 2ew2_A 152 ELENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAA 231 (316)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred EEeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHH
Confidence 322234557788999999999999999999999999999999998665555444432 1 223345889999999999
Q ss_pred HHHHcCCCcc--ccccccCCCceeeecccCC--Cccch-HHHHh-hCCCChHHHHhhcccceehhhhHHHHHHHHHHcCC
Q 012596 353 LATKMGAKPA--TITGLSGTGDIMLTCFVNL--SRNRT-VGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426 (460)
Q Consensus 353 la~a~Gi~~~--~~~~~~~~gd~~~t~~s~~--srn~~-~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv 426 (460)
+++++|++++ .+.+ .+.++.+.. .++++ +.+|+ ..|++. |..+++++++++|+++|+
T Consensus 232 la~~~G~~~~~~~~~~------~~~~~~~~~~~~~~~~sm~~d~~~~g~~~-----------E~~~~~~~~~~~a~~~gv 294 (316)
T 2ew2_A 232 VAEKEAIYLDQAEVYT------HIVQTYDPNGIGLHYPSMYQDLIKNHRLT-----------EIDYINGAVWRKGQKYNV 294 (316)
T ss_dssp HHHHTTCCCCHHHHHH------HHHHTTCTTTTTTSCCHHHHHHTTTCCCC-----------SGGGTHHHHHHHHHHHTC
T ss_pred HHHHcCCCCChHHHHH------HHHHHhccccCCCCCcHHHHHHHHcCCcc-----------hHHHHhhHHHHHHHHhCC
Confidence 9999999973 2322 222233322 34443 67777 777654 345899999999999999
Q ss_pred CChHHHHHHHHHhc
Q 012596 427 KMPVLTAVARIIDN 440 (460)
Q Consensus 427 ~~P~~~~v~~ll~~ 440 (460)
++|+++.+|++++.
T Consensus 295 ~~P~~~~~~~~~~~ 308 (316)
T 2ew2_A 295 ATPFCAMLTQLVHG 308 (316)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999874
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=250.52 Aligned_cols=273 Identities=12% Similarity=0.089 Sum_probs=194.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil 205 (460)
+|||+|||+|+||+++|..|+++| ++|++|+|+++.++.... .+ ..+..+ ..+..+.+ +++|+||+
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~--------~g-~~~~~~--~~~~~~~~~~~~D~vil 68 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSL--PHTTLIGRHAKTITYYTV--------PH-APAQDI--VVKGYEDVTNTFDVIII 68 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHC--TTCEEEESSCEEEEEESS--------TT-SCCEEE--EEEEGGGCCSCEEEEEE
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeccCcEEEEec--------CC-eeccce--ecCchHhcCCCCCEEEE
Confidence 479999999999999999999999 899999998643221000 01 122222 22344444 78999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH--HhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ--ALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~--~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
|||+++++++++.+.++++++++||+++||++..+. +.. .++......+.+.||+++. .+ +..+.++
T Consensus 69 avk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~------~~~~~v~~g~~~~~a~~~~pg~v~---~~-~~~~~~~- 137 (294)
T 3g17_A 69 AVKTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH------IPFKNVCQAVVYISGQKKGDVVTH---FR-DYQLRIQ- 137 (294)
T ss_dssp CSCGGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG------CCCSCEEECEEEEEEEEETTEEEE---EE-EEEEEEE-
T ss_pred eCCccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh------CCCCcEEEEEEEEEEEEcCCCEEE---EC-CCEEecC-
Confidence 999999999999999999889999999999998641 111 1111001234567888762 12 3333343
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHH---HHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAG---IVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g---~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+.+..+.+.++|+..+++++.++|+.+.+|.|+++|+..+.++ ...+..+.++....++.+++.|+.++++++|++
T Consensus 138 -~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~ 216 (294)
T 3g17_A 138 -DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLN 216 (294)
T ss_dssp -CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4577899999999999999999999999999999998433332 222333347788899999999999999999998
Q ss_pred ccc-cccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHH
Q 012596 361 PAT-ITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARII 438 (460)
Q Consensus 361 ~~~-~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll 438 (460)
.+. ..+ +.+.........++ +|.+|+.+|+++| ....+|+++++|+++|+++|+++++|+++
T Consensus 217 l~~~~~~-----~~~~~~~~~~~~~~sSM~qD~~~gr~tE-----------id~i~G~vv~~a~~~gv~~P~~~~l~~ll 280 (294)
T 3g17_A 217 FSEQTVD-----TIMTIYQGYPDEMGTSMYYDIVHQQPLE-----------VEAIQGFIYRRAREHNLDTPYLDTIYSFL 280 (294)
T ss_dssp CCHHHHH-----HHHHHHHTSCTTCCCHHHHHHHTTCCCS-----------GGGTHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCHHHHH-----HHHHHHhhcCCCCCCcHHHHHHcCCCcc-----------HHHhhhHHHHHHHHhCCCCChHHHHHHHH
Confidence 532 111 01111011112233 5678888887764 33678999999999999999999999998
Q ss_pred hc
Q 012596 439 DN 440 (460)
Q Consensus 439 ~~ 440 (460)
+.
T Consensus 281 ~~ 282 (294)
T 3g17_A 281 RA 282 (294)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=246.50 Aligned_cols=276 Identities=14% Similarity=0.144 Sum_probs=200.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|+||||||+|.||.+||.+|.++| |+|++|||++++++.+.+.| ...++++.|+++.||+||+|
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G--~~v~v~dr~~~~~~~l~~~G--------------a~~a~s~~e~~~~~dvv~~~ 66 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLVQSAVDGLVAAG--------------ASAARSARDAVQGADVVISM 66 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHTT--------------CEECSSHHHHHTTCSEEEEC
T ss_pred cCEEEEeeehHHHHHHHHHHHhCC--CeEEEEcCCHHHHHHHHHcC--------------CEEcCCHHHHHhcCCceeec
Confidence 579999999999999999999999 99999999999999998876 35677999999999999999
Q ss_pred cchh-cHHHHHHH---hhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MPVQ-FSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp~~-~~~~vl~~---i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
+|.. ++++|+.. +.+.+++++++|++++ +.|++.+.+.+.+.+. | +.++.+|.++........+..++.
T Consensus 67 l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT-~~p~~~~~~a~~~~~~-G-----~~~lDaPVsGg~~~A~~G~L~imv 139 (300)
T 3obb_A 67 LPASQHVEGLYLDDDGLLAHIAPGTLVLECST-IAPTSARKIHAAARER-G-----LAMLDAPVSGGTAGAAAGTLTFMV 139 (300)
T ss_dssp CSCHHHHHHHHHSSSSSTTSCCC-CEEEECSC-CCHHHHHHHHHHHHTT-T-----CEEEECCEESCHHHHHHTCEEEEE
T ss_pred CCchHHHHHHHhchhhhhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CEEEecCCCCCHHHHHhCCEEEEE
Confidence 9964 58888864 6778889999999997 7777766777766654 3 346666665544332223444666
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
+++.+.+++++++|+..+-++++.++. |.+..+|+.+|.+......++.|++.++++.|+|++
T Consensus 140 GG~~~~~~~~~p~l~~~g~~i~~~G~~-----------------G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~ 202 (300)
T 3obb_A 140 GGDAEALEKARPLFEAMGRNIFHAGPD-----------------GAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAK 202 (300)
T ss_dssp ESCHHHHHHHHHHHHHHEEEEEEEEST-----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 778999999999999998888887774 233444556677777888999999999999999999
Q ss_pred cccccc--CCCcee-eecccCCC---ccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHH
Q 012596 363 TITGLS--GTGDIM-LTCFVNLS---RNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR 436 (460)
Q Consensus 363 ~~~~~~--~~gd~~-~t~~s~~s---rn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ 436 (460)
.+.++. +.+... .....+.. .......+...+++++. ..||+++++++|++.|+++|+.+.+.+
T Consensus 203 ~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l----------~~KDl~l~~~~A~~~g~~~p~~~~a~~ 272 (300)
T 3obb_A 203 VLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQL----------MAKDLGLAQEAAQASASSTPMGSLALS 272 (300)
T ss_dssp HHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHH----------HHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHH----------HHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 887742 222211 11111100 00001112223344432 458999999999999999999998888
Q ss_pred HHh-------cCCCHHHHHHHHh
Q 012596 437 IID-------NELTPKKAVLELM 452 (460)
Q Consensus 437 ll~-------~~~~~~~~~~~l~ 452 (460)
++. ++.+...+++.+.
T Consensus 273 ~~~~a~~~G~g~~D~sal~~~~e 295 (300)
T 3obb_A 273 LYRLLLKQGYAERDFSVVQKLFD 295 (300)
T ss_dssp HHHHHHHTTCTTSBGGGGHHHHC
T ss_pred HHHHHHhCCCCCcCHHHHHHHHH
Confidence 774 3445555555553
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=246.43 Aligned_cols=286 Identities=14% Similarity=0.105 Sum_probs=194.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhc-----CCCCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK-----KSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~-----G~~~~V~v~~r~~~~~~~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
+|||+|||+|+||++||..|+++ | .++|++|+| +++++.+++ .|......++.....++.++++.+ .++++
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g-~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 84 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDG-LLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA-EVGTV 84 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTS-SEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHH-HHCCE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCC-CCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCcc-ccCCC
Confidence 47999999999999999999988 6 268999999 788899988 665433222211112345556654 46899
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC------CEEEEECcccHHHHhcc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ------PFIALSGPSFALELMNK 274 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~------~~~v~~gP~~a~e~~~g 274 (460)
|+||+|||++++.++++++.+.++++++||+++||++.. +.+.+.++...+ ..+.+.||+...+...|
T Consensus 85 D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~------~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g 158 (317)
T 2qyt_A 85 DYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIA------ERMRTYLPDTVVWKGCVYISARKSAPGLITLEADR 158 (317)
T ss_dssp EEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHH------HHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcH------HHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCC
Confidence 999999999999999999999888889999999998653 344554443111 12234556554332222
Q ss_pred CCeEEEEcc----CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcH--HHHHHHHHHH
Q 012596 275 LPTAMVVAS----KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNS--MAALVAQGCS 348 (460)
Q Consensus 275 ~~~~i~i~~----~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~--~~al~~~~~~ 348 (460)
...++++ .+.+.+ .+.++|+..|+.+++.+|+...+|.|+++|+...+.+...+...+.+. ...++..+++
T Consensus 159 --~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~ 235 (317)
T 2qyt_A 159 --ELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLE 235 (317)
T ss_dssp --EEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHH
T ss_pred --ceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 2222543 346777 899999999999999999999999999999987776666665544332 3478889999
Q ss_pred HHHHHHHHcCCCccc--cccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcC
Q 012596 349 EIRWLATKMGAKPAT--ITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYN 425 (460)
Q Consensus 349 E~~~la~a~Gi~~~~--~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~g 425 (460)
|+..+++++|+++++ +.+ .+.++....++++ ++.+|+..|+++| ....+++++++|+++|
T Consensus 236 E~~~v~~a~G~~~~~~~~~~------~~~~~~~~~~~~~~sm~~d~~~g~~~E-----------~~~~~g~~~~~a~~~g 298 (317)
T 2qyt_A 236 EVAELFRAKYGQVPDDVVQQ------LLDKQRKMPPESTSSMHSDFLQGGSTE-----------VETLTGYVVREAEALR 298 (317)
T ss_dssp HHHHHHHHHTSCCCSSHHHH------HHHHHHHC-------------------------------CTTTHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCChHHHHH------HHHHHhccCCCCCChHHHHHHcCCccC-----------HHHHhhHHHHHHHHcC
Confidence 999999999999742 222 2222222223333 2456666665543 3356899999999999
Q ss_pred CCChHHHHHHHHHhcC
Q 012596 426 VKMPVLTAVARIIDNE 441 (460)
Q Consensus 426 v~~P~~~~v~~ll~~~ 441 (460)
+++|+++.+|++++..
T Consensus 299 v~~P~~~~~~~~~~~~ 314 (317)
T 2qyt_A 299 VDLPMYKRMYRELVSR 314 (317)
T ss_dssp CCCHHHHHHHHTTCC-
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988753
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-28 Score=242.74 Aligned_cols=280 Identities=11% Similarity=0.024 Sum_probs=199.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+|||+|||+|+||+++|..|+ +| ++|++|+|++++++.+++.|.+... ++...+..+... .++...+|+||+|
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g--~~V~~~~r~~~~~~~l~~~G~~~~~-~~~~~~~~~~~~---~~~~~~~D~vila 74 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LY--HDVTVVTRRQEQAAAIQSEGIRLYK-GGEEFRADCSAD---TSINSDFDLLVVT 74 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSCHHHHHHHHHHCEEEEE-TTEEEEECCEEE---SSCCSCCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHh-cC--CceEEEECCHHHHHHHHhCCceEec-CCCeeccccccc---ccccCCCCEEEEE
Confidence 489999999999999999999 88 9999999999999999888764331 121112112221 2346789999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC------CCEEEEECcccHHHHhccCCeEEE
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAMV 280 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~------~~~~v~~gP~~a~e~~~g~~~~i~ 280 (460)
||+++++++++.+.+. .+++ ||+++||++.+ +.+.+.+|... ...+...+|+...+...| .+.
T Consensus 75 vK~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~------e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g---~~~ 143 (307)
T 3ego_A 75 VKQHQLQSVFSSLERI-GKTN-ILFLQNGMGHI------HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLG---AIK 143 (307)
T ss_dssp CCGGGHHHHHHHTTSS-CCCE-EEECCSSSHHH------HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECC---CEE
T ss_pred eCHHHHHHHHHHhhcC-CCCe-EEEecCCccHH------HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeee---eEE
Confidence 9999999999999875 5666 99999999864 34555555321 112344567665433222 234
Q ss_pred EccCC--HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC----cHHHHHHHHHHHHHHHHH
Q 012596 281 VASKD--RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN----NSMAALVAQGCSEIRWLA 354 (460)
Q Consensus 281 i~~~d--~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~----n~~~al~~~~~~E~~~la 354 (460)
++..+ .+.++++.++|...++++..++|+....|.|+++|+..+..+...+..++. .....++..++.|+.+++
T Consensus 144 iG~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va 223 (307)
T 3ego_A 144 WSAFDDAEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRIL 223 (307)
T ss_dssp EEECTTCCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHH
Confidence 55322 455677888888899999999999999999999999777777766776663 345788999999999999
Q ss_pred HHcCCCccccccccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHH
Q 012596 355 TKMGAKPATITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA 433 (460)
Q Consensus 355 ~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~ 433 (460)
++.+ ++.+.+. .+..+... ..+ .+|-+|+.+|+++| ....+|+++++|+++|+++|++++
T Consensus 224 ~~~~--~~~~~~~-----~~~~~~~~-~~~~sSM~qD~~~gr~tE-----------id~i~G~vv~~a~~~gv~tP~~~~ 284 (307)
T 3ego_A 224 KLEN--EEKAWER-----VQAVCGQT-KENRSSMLVDVIGGRQTE-----------ADAIIGYLLKEASLQGLDAVHLEF 284 (307)
T ss_dssp TCSC--HHHHHHH-----HHHHHHHT-TTCCCHHHHHHHHTCCCS-----------HHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hccC--hHHHHHH-----HHHHHHhc-CCCCchHHHHHHcCCccc-----------HHHhhhHHHHHHHHcCCCCcHHHH
Confidence 7653 2222210 00001111 122 25667887777664 346789999999999999999999
Q ss_pred HHHHHhcCCC
Q 012596 434 VARIIDNELT 443 (460)
Q Consensus 434 v~~ll~~~~~ 443 (460)
+|++++..+.
T Consensus 285 l~~li~~~e~ 294 (307)
T 3ego_A 285 LYGSIKALER 294 (307)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHh
Confidence 9999986554
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=243.06 Aligned_cols=271 Identities=17% Similarity=0.167 Sum_probs=211.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG 199 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~ 199 (460)
..+|+|||+|+||.+||..|+++| ++|++||+++++++.+++ |.++.|.++.. .+.++++++|+++++++
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G--~~V~~~D~~~~kv~~l~~-g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~ 84 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFG--HEVVCVDKDARKIELLHQ-NVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKD 84 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHTT-TCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTT
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHhc-CCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhc
Confidence 478999999999999999999999 999999999999999987 56677777654 35678999999999999
Q ss_pred CcEEEEccchh-----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccH
Q 012596 200 ADYCLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA 268 (460)
Q Consensus 200 aDiVilaVp~~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a 268 (460)
||+||+|||+. .+++++++|.+.++++++||..+ ++.+++.+.+.+.+.+..+. ..+.+.++|.++
T Consensus 85 aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~--~d~~v~~~Pe~a 161 (446)
T 4a7p_A 85 ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIAEVAPN--SGAKVVSNPEFL 161 (446)
T ss_dssp CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHHHHSTT--SCCEEEECCCCC
T ss_pred CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHHHhCCC--CCceEEeCcccc
Confidence 99999998854 48899999999999999999988 69999888888888876443 467899999998
Q ss_pred HHHhc----cCCeEEEEccCCHHHHHHHHHHHhcCCce---EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 012596 269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKHLR---ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA 341 (460)
Q Consensus 269 ~e~~~----g~~~~i~i~~~d~~~~~~l~~lL~~~g~~---v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~a 341 (460)
.+... +.++.+++|+.+.+..++++++|+..+-. ++...|+.+.+..|+ .+|.+.+
T Consensus 162 ~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl-----------------~~N~~~a 224 (446)
T 4a7p_A 162 REGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKY-----------------AANAFLA 224 (446)
T ss_dssp CTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHH-----------------HHHHHHH
T ss_pred cccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHH-----------------HHHHHHH
Confidence 76432 45666778877789999999999976543 466778777766654 4556777
Q ss_pred HHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHH
Q 012596 342 LVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALA 421 (460)
Q Consensus 342 l~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA 421 (460)
+..++++|+..+|+++|+|++++.+..+....+. .+.+.+|.-+ .|.. ..||.++++..|
T Consensus 225 ~~ia~~nE~~~l~~~~GiD~~~v~~~~~~~~rig------~~~l~pg~G~-gg~c-------------~~KD~~~l~~~A 284 (446)
T 4a7p_A 225 VKITFINEIADLCEQVGADVQEVSRGIGMDNRIG------GKFLHAGPGY-GGSC-------------FPKDTLALMKTA 284 (446)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTC---------CCCCCSCC-CTTT-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCC------CccCCCCCCc-chhh-------------HHHHHHHHHHHH
Confidence 8899999999999999999998887543221000 0000111000 1222 238999999999
Q ss_pred HHcCCCChHHHHHHHHHhc
Q 012596 422 QKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 422 ~~~gv~~P~~~~v~~ll~~ 440 (460)
+++|+++|+.+++.++...
T Consensus 285 ~~~g~~~~l~~~~~~iN~~ 303 (446)
T 4a7p_A 285 ADNETPLRIVEATVQVNDA 303 (446)
T ss_dssp HHTTCCCHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHH
Confidence 9999999999999987543
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=236.74 Aligned_cols=255 Identities=15% Similarity=0.140 Sum_probs=182.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
+||||||+|.||.+||.+|+++| |+|++|||++++++++.+.| ...++++.|+++.+|+||+|+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~G--------------~~~~~s~~e~~~~~dvvi~~l 69 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAG--YELVVWNRTASKAEPLTKLG--------------ATVVENAIDAITPGGIVFSVL 69 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEC-------CTTTTTT--------------CEECSSGGGGCCTTCEEEECC
T ss_pred CcEEEEecHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcC--------------CeEeCCHHHHHhcCCceeeec
Confidence 58999999999999999999999 99999999998887766554 456778999999999999999
Q ss_pred chh-cHHHHH-HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012596 208 PVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (460)
Q Consensus 208 p~~-~~~~vl-~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d 285 (460)
|+. ++++++ ..+.+.+++++++|++++ +.|++.+.+.+.+.+. | +.++.+|..+........+..++.+++
T Consensus 70 ~~~~~~~~v~~~~~~~~~~~~~iiid~sT-~~p~~~~~~~~~~~~~-g-----~~~ldapVsGg~~~a~~g~l~im~gG~ 142 (297)
T 4gbj_A 70 ADDAAVEELFSMELVEKLGKDGVHVSMST-ISPETSRQLAQVHEWY-G-----AHYVGAPIFARPEAVRAKVGNICLSGN 142 (297)
T ss_dssp SSHHHHHHHSCHHHHHHHCTTCEEEECSC-CCHHHHHHHHHHHHHT-T-----CEEEECCEECCHHHHHHTCCEEEEEEC
T ss_pred cchhhHHHHHHHHHHhhcCCCeEEEECCC-CChHHHHHHHHHHHhc-C-----CceecCCcCCCccccccccceeecccc
Confidence 975 455554 557778889999999997 7777767777776654 3 346666666543322222223556678
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 012596 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT 365 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~ 365 (460)
.+.+++++++|+..+-++++..+.. |.+..+|+.+|.+......++.|++.++++.|+|+++++
T Consensus 143 ~~~~~~~~~~l~~~g~~i~~~g~~~----------------G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~ 206 (297)
T 4gbj_A 143 AGAKERIKPIVENFVKGVFDFGDDP----------------GAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIY 206 (297)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCT----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhHHHHHHHHHHHhhCCeEEecCCc----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999998887766422 233445556677778888999999999999999999988
Q ss_pred ccc--CCCceeeecccCCCccchHHHHhh------CCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 366 GLS--GTGDIMLTCFVNLSRNRTVGVRLG------SGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 366 ~~~--~~gd~~~t~~s~~srn~~~g~~l~------~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
++. +.+... ..++ .+..+. .|++++ ...||+++++++|++.|+++|+.+.+.++
T Consensus 207 ~~l~~~~~~s~------~~~~--~~~~~~~~~~~p~~f~~~----------l~~KDl~l~~~~A~~~g~~~p~~~~~~~~ 268 (297)
T 4gbj_A 207 EMLTSTLFAAP------IFQN--YGKLVASNTYEPVAFRFP----------LGLKDINLTLQTASDVNAPMPFADIIRNR 268 (297)
T ss_dssp HHHHTTTTCSH------HHHH--HHHHHHHTCCCSCSSBHH----------HHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHhhcccCc------hhhc--cCccccCCCCCCccchhH----------HHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 752 111100 0011 122221 133333 24599999999999999999999999888
Q ss_pred Hh
Q 012596 438 ID 439 (460)
Q Consensus 438 l~ 439 (460)
+.
T Consensus 269 ~~ 270 (297)
T 4gbj_A 269 FI 270 (297)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=241.09 Aligned_cols=277 Identities=20% Similarity=0.207 Sum_probs=210.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--C-----CCceEEeCCHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L-----PENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~--l-----~~~i~a~~~~~ea~~ 198 (460)
..|||+|||+|+||+++|..|+++| ++|++||+++++++.+++.+ ...+.++.. + ..++.+++|++++++
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G--~~V~~~d~~~~~v~~l~~~~-~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~ 83 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIG--HDVFCLDVDQAKIDILNNGG-VPIHEPGLKEVIARNRSAGRLRFSTDIEAAVA 83 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEECCHHHHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHHhcccCCEEEECCHHHHhh
Confidence 4699999999999999999999999 99999999999999998865 444544432 1 235788999988889
Q ss_pred CCcEEEEccch----------hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCC-CC-CCEEEEECcc
Q 012596 199 GADYCLHAMPV----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN-PR-QPFIALSGPS 266 (460)
Q Consensus 199 ~aDiVilaVp~----------~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~-~~-~~~~v~~gP~ 266 (460)
+||+||+|||+ ..+++++++|.++++++++||..+ |+.+++.+.+.+.+.+.++. .+ ..+.+.++|.
T Consensus 84 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S-Tv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe 162 (478)
T 2y0c_A 84 HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS-TVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPE 162 (478)
T ss_dssp HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCC
T ss_pred cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CcCCCchHHHHHHHHHHhcCCCCCccEEEEEChh
Confidence 99999999998 789999999999999999998887 78888777777877765321 11 3577899999
Q ss_pred cHHHHhc----cCCeEEEEccCCH----HHHHHHHHHHhcCCc--eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012596 267 FALELMN----KLPTAMVVASKDR----KLANAVQQLLASKHL--RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN 336 (460)
Q Consensus 267 ~a~e~~~----g~~~~i~i~~~d~----~~~~~l~~lL~~~g~--~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~ 336 (460)
++.+... +.+..+++++.+. +..+.++++|+.... .++...|+.+.+|.|++.|.
T Consensus 163 ~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~--------------- 227 (478)
T 2y0c_A 163 FLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANA--------------- 227 (478)
T ss_dssp CCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHH---------------
T ss_pred hhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHH---------------
Confidence 8765322 4455567777655 788999999986432 47778889999998876664
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHH
Q 012596 337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGA 416 (460)
Q Consensus 337 n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~ 416 (460)
+.++..++++|+..+|++.|++++++.+..+....+ ..+++.+|..+ .|.+. .||.++
T Consensus 228 --~~a~~ia~~nE~~~la~~~Gid~~~v~~~i~~~~ri------g~~~~~pG~g~-gg~c~-------------~kD~~~ 285 (478)
T 2y0c_A 228 --MLATRISFMNELANLADRFGADIEAVRRGIGSDPRI------GYHFLYAGCGY-GGSCF-------------PKDVEA 285 (478)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTT------CSTTCCCSSCC-CSSSH-------------HHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCcc------CcccCCCCccc-ccCcC-------------HHHHHH
Confidence 566778899999999999999988776532211000 01122222211 12222 278999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHhcCCC
Q 012596 417 VIALAQKYNVKMPVLTAVARIIDNELT 443 (460)
Q Consensus 417 vv~lA~~~gv~~P~~~~v~~ll~~~~~ 443 (460)
++++|+++|+++|+++++++++.....
T Consensus 286 l~~~A~~~gv~~pl~~~v~~in~~~~~ 312 (478)
T 2y0c_A 286 LIRTADEHGQSLQILKAVSSVNATQKR 312 (478)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhHH
Confidence 999999999999999999999987655
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=231.49 Aligned_cols=277 Identities=16% Similarity=0.170 Sum_probs=196.5
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..||||+|||+|.||..||..|+++| ++|++|||++++++.+.+.| +..+++++++++++|+||
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~g--------------~~~~~~~~~~~~~aDvvi 82 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNG--FKVTVWNRTLSKCDELVEHG--------------ASVCESPAEVIKKCKYTI 82 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSGGGGHHHHHTT--------------CEECSSHHHHHHHCSEEE
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHCC--------------CeEcCCHHHHHHhCCEEE
Confidence 35789999999999999999999999 99999999999988888754 345678999899999999
Q ss_pred Eccch-hcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012596 205 HAMPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV 280 (460)
Q Consensus 205 laVp~-~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~ 280 (460)
+|||. ..+++++ +++.+.++++++||++++ +.+.+.+.+.+.+.+. |. .++..|...........+..+
T Consensus 83 ~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st-~~~~~~~~~~~~~~~~-g~-----~~v~~pv~g~~~~a~~g~l~i 155 (310)
T 3doj_A 83 AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMST-VDAETSLKINEAITGK-GG-----RFVEGPVSGSKKPAEDGQLII 155 (310)
T ss_dssp ECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSC-CCHHHHHHHHHHHHHT-TC-----EEEECCEECCHHHHHHTCEEE
T ss_pred EEcCCHHHHHHHHhCchhhhhccCCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----EEEeCCCCCChhHHhcCCeEE
Confidence 99996 4788888 788888999999999885 6665555566666543 32 244455443322111123334
Q ss_pred EccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 281 i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+.+++.+.+++++++|+..|.++...++....++.|++ +|.+......+++|+..++++.|++
T Consensus 156 ~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~-----------------~N~~~~~~~~~~~Ea~~l~~~~G~d 218 (310)
T 3doj_A 156 LAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLI-----------------VNMIMGSMMNAFSEGLVLADKSGLS 218 (310)
T ss_dssp EEEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred EEcCCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55567899999999999999888888775444555544 4455566678899999999999999
Q ss_pred ccccccccCCCceeeecccCCCccchHHHHhhCCC-ChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 361 PATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGE-KLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 361 ~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~-~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
++++.++.+.+. +.+...++ .+..+..+. ... .....+.||+++++++|+++|+++|+++.+++++.
T Consensus 219 ~~~~~~~~~~~~----~~s~~~~~--~~~~~~~~~~~~~------f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~ 286 (310)
T 3doj_A 219 SDTLLDILDLGA----MTNPMFKG--KGPSMNKSSYPPA------FPLKHQQKDMRLALALGDENAVSMPVAAAANEAFK 286 (310)
T ss_dssp HHHHHHHHHHST----TCCHHHHH--HHHHHHTTCCCCS------SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc----cccHHHHH--HhhhhhcCCCCCC------ccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 998876522110 11110111 123332221 100 12234569999999999999999999999999885
Q ss_pred -------cCCCHHHHHHHHhc
Q 012596 440 -------NELTPKKAVLELMS 453 (460)
Q Consensus 440 -------~~~~~~~~~~~l~~ 453 (460)
+..+...+++.+..
T Consensus 287 ~a~~~g~g~~d~~~~~~~~~~ 307 (310)
T 3doj_A 287 KARSLGLGDLDFSAVIEAVKF 307 (310)
T ss_dssp HHHHTTCTTSBGGGGHHHHHC
T ss_pred HHHHcCCCCcCHHHHHHHHHh
Confidence 23445556666654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=236.06 Aligned_cols=275 Identities=19% Similarity=0.187 Sum_probs=211.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--C-----CCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L-----PENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~--l-----~~~i~a~~~~~ea~~~a 200 (460)
|||+|||+|.||.++|..|+++| ++|++||+++++++.+++ |....|.++.. + ..++.+++++++++++|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G--~~V~~~D~~~~~v~~l~~-g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a 79 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELG--ANVRCIDTDRNKIEQLNS-GTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEA 79 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH-TCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHc-CCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence 79999999999999999999999 999999999999999987 55555555432 1 35688899999989999
Q ss_pred cEEEEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccH
Q 012596 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFA 268 (460)
Q Consensus 201 DiVilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a 268 (460)
|+||+|||+. .+.+++++|.++++++++||+.++ +.+++.+.+.+.+.+..+.. ...+.+.++|.++
T Consensus 80 DvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a 158 (450)
T 3gg2_A 80 DIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST-VPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFL 158 (450)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC-CCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCC
T ss_pred CEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee-CCCcchHHHHHHHHHhccccCcCcceeEEechhhh
Confidence 9999999977 789999999999999999999884 88888778888887654321 1457899999988
Q ss_pred HHHhc----cCCeEEEEccCCHHHHHHHHHHHhcCCc--eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Q 012596 269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKHL--RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL 342 (460)
Q Consensus 269 ~e~~~----g~~~~i~i~~~d~~~~~~l~~lL~~~g~--~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al 342 (460)
.+... ..++.+++++.+.+..++++++|+..+. ..+...|+.+.++.|+ .+|.+.++
T Consensus 159 ~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl-----------------~~N~~~a~ 221 (450)
T 3gg2_A 159 KEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKY-----------------AANAMLAT 221 (450)
T ss_dssp CTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHH-----------------HHHHHHHH
T ss_pred cccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHH-----------------HHHHHHHH
Confidence 75432 4556677887788999999999997653 2455678877777654 44567788
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHH
Q 012596 343 VAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQ 422 (460)
Q Consensus 343 ~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~ 422 (460)
..++++|+..+|+++|+|++++.+..+....+ . ...+.+|..+ .|.. ..||.++++..|+
T Consensus 222 ~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~ri----g--~~~~~pg~G~-gg~c-------------~~KD~~~l~~~a~ 281 (450)
T 3gg2_A 222 RISFMNDVANLCERVGADVSMVRLGIGSDSRI----G--SKFLYPGCGY-GGSC-------------FPKDVKALIRTAE 281 (450)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHTSTTT----C--SSSCCCSSCC-CSSH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHcCCCCC----C--cccCCCCCCC-Cccc-------------HHhhHHHHHHHHH
Confidence 89999999999999999999988764332111 0 0111111101 1111 2489999999999
Q ss_pred HcCCCChHHHHHHHHHhcCCC
Q 012596 423 KYNVKMPVLTAVARIIDNELT 443 (460)
Q Consensus 423 ~~gv~~P~~~~v~~ll~~~~~ 443 (460)
++|+++|+.+++.++......
T Consensus 282 ~~g~~~~l~~~~~~iN~~~~~ 302 (450)
T 3gg2_A 282 DNGYRMEVLEAVERVNEKQKS 302 (450)
T ss_dssp HTTCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCcHHHHHHHHHHHHHHH
Confidence 999999999999998765444
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=226.64 Aligned_cols=264 Identities=13% Similarity=0.086 Sum_probs=186.7
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+++|||+|||+|.||..||..|+++| ++|++|||++++++.+.+.| +..+++++++++ +|+|
T Consensus 12 M~~~~~I~vIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~-aDvv 74 (296)
T 3qha_A 12 TTEQLKLGYIGLGNMGAPMATRMTEWP--GGVTVYDIRIEAMTPLAEAG--------------ATLADSVADVAA-ADLI 74 (296)
T ss_dssp ---CCCEEEECCSTTHHHHHHHHTTST--TCEEEECSSTTTSHHHHHTT--------------CEECSSHHHHTT-SSEE
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHCC--------------CEEcCCHHHHHh-CCEE
Confidence 434579999999999999999999999 99999999999888888754 356678999888 9999
Q ss_pred EEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 204 ilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|+|||. ..++++++++.+.++++++||++++ ..+.+.+.+.+.+.+. | ..++.+|.+............++.
T Consensus 75 i~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~~~~ 147 (296)
T 3qha_A 75 HITVLDDAQVREVVGELAGHAKPGTVIAIHST-ISDTTAVELARDLKAR-D-----IHIVDAPVSGGAAAAARGELATMV 147 (296)
T ss_dssp EECCSSHHHHHHHHHHHHTTCCTTCEEEECSC-CCHHHHHHHHHHHGGG-T-----CEEEECCEESCHHHHHHTCEEEEE
T ss_pred EEECCChHHHHHHHHHHHHhcCCCCEEEEeCC-CCHHHHHHHHHHHHHc-C-----CEEEeCCCcCCHHHHhcCCccEEe
Confidence 999995 5788999999999999999999886 5555445555555443 3 234555554433221112333555
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
+++.+.+++++++|+..+.++++.++....++ +|+.+|.+......+++|+..++++.|++++
T Consensus 148 gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~-----------------~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~ 210 (296)
T 3qha_A 148 GADREVYERIKPAFKHWAAVVIHAGEPGAGTR-----------------MKLARNMLTFTSYAAACEAMKLAEAAGLDLQ 210 (296)
T ss_dssp ECCHHHHHHHHHHHHHHEEEEEEEESTTHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEcCChhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 66889999999999998888877776433334 3445566677788899999999999999999
Q ss_pred cc------cccc--CCCceeeecc-cCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHH
Q 012596 363 TI------TGLS--GTGDIMLTCF-VNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA 433 (460)
Q Consensus 363 ~~------~~~~--~~gd~~~t~~-s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~ 433 (460)
++ .+.. +.+..+.... ....+ |..++.+.. ... ....||+++++++|+++|+++|+.+.
T Consensus 211 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~-~~~~f~~~~--~~~---------~~~~KD~~~~~~~a~~~g~~~p~~~~ 278 (296)
T 3qha_A 211 ALGRVVRHTDALTGGPGAIMVRDNMKDLEP-DNFLYQPFL--HTR---------GLGEKDLSLALALGEAVSVDLPLARL 278 (296)
T ss_dssp HHHHHHHHHHHHHCCGGGGCCCSSCSCCCT-TSTTHHHHH--HHH---------HHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHhhhcchHHHHhcCcccCHHhhchhhhhc-CCCCCchhh--hhh---------HHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 98 6542 2222111100 01111 222221100 000 12459999999999999999999999
Q ss_pred HHHHHhc
Q 012596 434 VARIIDN 440 (460)
Q Consensus 434 v~~ll~~ 440 (460)
+++++..
T Consensus 279 ~~~~~~~ 285 (296)
T 3qha_A 279 AYEGLAA 285 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998853
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-27 Score=230.68 Aligned_cols=284 Identities=13% Similarity=0.123 Sum_probs=191.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|+||+++|..|+++| ++|++|+|++++++.+...+.+ +..++..+. .++. ++++++|+||+||
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~~~~~l~~~~~~-----~~~~~~~~~-~~~~-~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQPYCSVNLVETD-----GSIFNESLT-ANDP-DFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSEEEEEEECTT-----SCEEEEEEE-ESCH-HHHHTCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhCC--CCEEEEEcCccceeeEEEEcCC-----Cceeeeeee-ecCc-cccCCCCEEEEEe
Confidence 68999999999999999999999 8999999997654433222210 000111122 2444 5568999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHH
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK 287 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~ 287 (460)
|++++.++++++.+.++++++||+++||+... +.+.+.+.+.++......+.+.|| .+.+...|. ..+...+.+.+
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~--~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~-~~i~~~~~~~~ 147 (291)
T 1ks9_A 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTI--EELQNIQQPLLMGTTTHAARRDGN-VIIHVANGI-THIGPARQQDG 147 (291)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT--GGGTTCCSCEEEEEECCEEEEETT-EEEEEECCC-EEEEESSGGGT
T ss_pred cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcH--HHHHHhcCCeEEEEEeEccEEcCC-EEEEecccc-eEEccCCCCcc
Confidence 99999999999999999999999999998653 122222221111100113357788 544333443 22222234456
Q ss_pred HHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCc-HHHHHHHHHHHHHHHHHHHcCCCc--ccc
Q 012596 288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN-SMAALVAQGCSEIRWLATKMGAKP--ATI 364 (460)
Q Consensus 288 ~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n-~~~al~~~~~~E~~~la~a~Gi~~--~~~ 364 (460)
..++++++|+..|.++++.+|+.+..|.|++.|......+...+...+.- ....++..++.|+.++++++|+++ +.+
T Consensus 148 ~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~ 227 (291)
T 1ks9_A 148 DYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDL 227 (291)
T ss_dssp TCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred hHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 67899999999999999999999999999999876544433333322210 024788999999999999999986 233
Q ss_pred ccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhc
Q 012596 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 365 ~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
.+ .+.+....+.+ ...++-+|+..|++.| ..++.|+++++|+++|+++|+++.+|++++.
T Consensus 228 ~~--~~~~~~~~~~~---~~ssm~~d~~~g~~~e-----------~~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~ 287 (291)
T 1ks9_A 228 RD--YVMQVIDATAE---NISSMLQDIRALRHTE-----------IDYINGFLLRRARAHGIAVPENTRLFEMVKR 287 (291)
T ss_dssp HH--HHHHHHHHTTT---CCCHHHHHHHTTCCCS-----------GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HH--HHHHHHhcCCC---CCChHHHHHHcCCccH-----------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 21 11111111111 1123446777666543 3367899999999999999999999999863
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=225.53 Aligned_cols=271 Identities=18% Similarity=0.204 Sum_probs=194.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++|||+|||+|.||..||..|+++| ++|++|||++++++.+.+.| +..+++++++++++|+||+
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~l~~~g--------------~~~~~~~~e~~~~aDvVi~ 93 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAG--YALQVWNRTPARAASLAALG--------------ATIHEQARAAARDADIVVS 93 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTT--------------CEEESSHHHHHTTCSEEEE
T ss_pred CCCEEEEECccHHHHHHHHHHHhCC--CeEEEEcCCHHHHHHHHHCC--------------CEeeCCHHHHHhcCCEEEE
Confidence 4689999999999999999999999 99999999999999888754 3566789999999999999
Q ss_pred ccch-hcHHHHHH--HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 206 AMPV-QFSSSFLE--GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 206 aVp~-~~~~~vl~--~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|||. ..++.++. ++.+.++++++||++++ ..+.+.+.+.+.+.+. | ..++.+|.+............++.
T Consensus 94 ~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~i~~ 166 (320)
T 4dll_A 94 MLENGAVVQDVLFAQGVAAAMKPGSLFLDMAS-ITPREARDHAARLGAL-G-----IAHLDTPVSGGTVGAEQGTLVIMA 166 (320)
T ss_dssp CCSSHHHHHHHHTTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHT-T-----CEEEECCEECHHHHHHHTCEEEEE
T ss_pred ECCCHHHHHHHHcchhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHc-C-----CEEEeCCCcCCHhHHhcCCeeEEe
Confidence 9996 57888887 78888889999999986 4555445555555543 3 345566666544322122333455
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
+++.+.+++++++|+.. .++.+.++....++.| +.+|.+......+++|+..++++.|++++
T Consensus 167 gg~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~K-----------------l~~N~~~~~~~~~~~Ea~~l~~~~G~d~~ 228 (320)
T 4dll_A 167 GGKPADFERSLPLLKVF-GRATHVGPHGSGQLTK-----------------LANQMIVGITIGAVAEALLFATKGGADMA 228 (320)
T ss_dssp ESCHHHHHHHHHHHHHH-EEEEEEESTTHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTSCCHH
T ss_pred CCCHHHHHHHHHHHHhc-CCEEEeCCccHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 66889999999999988 7777776654344444 34555666778899999999999999999
Q ss_pred ccccccCCCceeeecccCCCccchHHHHhh-----CCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLG-----SGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 363 ~~~~~~~~gd~~~t~~s~~srn~~~g~~l~-----~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
++.++...+. ..+.... ..+..+. .|+... ...||+++++++|+++|+++|+++.+.++
T Consensus 229 ~~~~~~~~~~----~~s~~~~--~~~~~~l~~~~~~gf~~~----------~~~KDl~~~~~~a~~~g~~~p~~~~~~~~ 292 (320)
T 4dll_A 229 KVKEAITGGF----ADSRVLQ--LHGQRMVERDFAPRARLS----------IQLKDMRNALATAQEIGFDAPITGLFEQL 292 (320)
T ss_dssp HHHHHHTTST----TCBHHHH--THHHHHHTTCCCCSSBHH----------HHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHccc----ccCHHHH--HhhhhhccCCCCCcccHH----------HHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 8877532211 0000000 1122222 233332 24599999999999999999999999988
Q ss_pred Hh-------cCCCHHHHHHHHhc
Q 012596 438 ID-------NELTPKKAVLELMS 453 (460)
Q Consensus 438 l~-------~~~~~~~~~~~l~~ 453 (460)
+. +..+...+++.+..
T Consensus 293 ~~~a~~~g~g~~d~~~~~~~~~~ 315 (320)
T 4dll_A 293 YAEGVEHGLTDLDQSGLFVELAS 315 (320)
T ss_dssp HHHHHTTTTTTSBGGGHHHHHHH
T ss_pred HHHHHhcCCCCcCHHHHHHHHHH
Confidence 85 23445555665543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=222.34 Aligned_cols=279 Identities=14% Similarity=0.114 Sum_probs=192.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++|||+|||+|.||.+||..|+++| ++|++|||++++++.+.+.|.. ..+++++++++++|+||+
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~-------------~~~~~~~e~~~~aDvvi~ 70 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAG--LSTWGADLNPQACANLLAEGAC-------------GAAASAREFAGVVDALVI 70 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTCS-------------EEESSSTTTTTTCSEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHcCCc-------------cccCCHHHHHhcCCEEEE
Confidence 3589999999999999999999999 9999999999999998886531 125678888899999999
Q ss_pred ccchh-cHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 206 AMPVQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 206 aVp~~-~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|||.. .++.++ +++.+.++++++||++++ ..+.+.+.+.+.+.+. | ..++..|...........+..++
T Consensus 71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~~~ 143 (303)
T 3g0o_A 71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSST-ISSADAQEIAAALTAL-N-----LNMLDAPVSGGAVKAAQGEMTVM 143 (303)
T ss_dssp CCSSHHHHHHHHC--CCCGGGSCTTCEEEECSC-CCHHHHHHHHHHHHTT-T-----CEEEECCEESCHHHHHTTCEEEE
T ss_pred ECCCHHHHHHHHhChhhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHc-C-----CeEEeCCCCCChhhhhcCCeEEE
Confidence 99975 688887 788889999999999986 5555444555555432 2 23444554443322223333455
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCC-hHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~D-i~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
.+++.+.+++++++|+..|.++...++ ....+|.|++. |.+..+...+++|+..++++.|++
T Consensus 144 ~gg~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~-----------------N~~~~~~~~~~~Ea~~l~~~~G~d 206 (303)
T 3g0o_A 144 ASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIH-----------------QLLAGVHIAAAAEAMALAARAGIP 206 (303)
T ss_dssp EECCHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 567899999999999998888777665 54455555444 445556678999999999999999
Q ss_pred ccccccccCCCceeeecccCCCccchHHHHhhCC-CChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 361 PATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 361 ~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g-~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
++++.++.+.+. +.+...++ .+..+..+ +... .....+.||+++++++|+++|+++|+++.+++++.
T Consensus 207 ~~~~~~~~~~~~----~~s~~~~~--~~~~~~~~~~~~~------~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~ 274 (303)
T 3g0o_A 207 LDVMYDVVTHAA----GNSWMFEN--RMQHVVDGDYTPR------SAVDIFVKDLGLVADTAKALRFPLPLASTALNMFT 274 (303)
T ss_dssp HHHHHHHHTTST----TCCHHHHH--HHHHHHTTCCCCS------SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc----cCCHHHHh--hhHHHhcCCCCCC------CchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 998877532210 11111111 12222222 1100 12234569999999999999999999999999885
Q ss_pred -------cCCCHHHHHHHHhcCC
Q 012596 440 -------NELTPKKAVLELMSLP 455 (460)
Q Consensus 440 -------~~~~~~~~~~~l~~~~ 455 (460)
+..+...+++.+..++
T Consensus 275 ~a~~~g~g~~d~~~~~~~~~~~~ 297 (303)
T 3g0o_A 275 SASNAGYGKEDDSAVIKIFSGEG 297 (303)
T ss_dssp HHHHTTTTTSBGGGGGGGC----
T ss_pred HHHhcCCCccCHHHHHHHHHhcc
Confidence 2334444455444443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=226.42 Aligned_cols=261 Identities=14% Similarity=0.115 Sum_probs=188.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||||+|||+|.||..||..|+++| ++|++|||++++++.+.+.| +..+++++++++++|+||+|
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~advvi~~ 64 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAG--FDVTVWNRNPAKCAPLVALG--------------ARQASSPAEVCAACDITIAM 64 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHT--CCEEEECSSGGGGHHHHHHT--------------CEECSCHHHHHHHCSEEEEC
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHHcCCEEEEE
Confidence 479999999999999999999999 99999999999988888765 34567899988999999999
Q ss_pred cchh-cHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MPVQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp~~-~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
||.. .+++++ +++.+.+++++++|++++ ..+.+.+.+.+.+.+. | ..++.+|...........+..++.
T Consensus 65 v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~~~~ 137 (287)
T 3pdu_A 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMST-VDDETSTAIGAAVTAR-G-----GRFLEAPVSGTKKPAEDGTLIILA 137 (287)
T ss_dssp CSSHHHHHHHHHSTTCGGGTCCTTCEEEECSC-CCHHHHHHHHHHHHHT-T-----CEEEECCEECCHHHHHHTCEEEEE
T ss_pred cCCHHHHHHHHcCchhhhhcccCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CEEEECCccCCHHHHhcCCEEEEE
Confidence 9975 788888 788888989999999886 4555445555555543 3 234555554433222222334555
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
+++.+.+++++++|+..|.++...++.....+.|+ .+|.+......+++|+..++++.|++++
T Consensus 138 gg~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl-----------------~~N~~~~~~~~~~~Ea~~l~~~~G~~~~ 200 (287)
T 3pdu_A 138 AGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKL-----------------VVNMIMGQMMTALGEGMALGRNCGLDGG 200 (287)
T ss_dssp EECHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 66889999999999999888888777544445444 4455566777899999999999999999
Q ss_pred ccccccCCCceeeecccCCCccchHHHHhhCC-CChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 363 ~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g-~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
++.++.+.+. +.+...++ .+..+.++ ... .....++.||+++++++|+++|+++|+++.+++++.
T Consensus 201 ~~~~~~~~~~----~~s~~~~~--~~~~~~~~~~~~------~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 266 (287)
T 3pdu_A 201 QLLEVLDAGA----MANPMFKG--KGQMLLSGEFPT------SFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFK 266 (287)
T ss_dssp HHHHHHHHST----TCCHHHHH--HHHHHHHTCCCC------SSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcc----ccChHHHh--hccccccCCCCC------CCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 8877532111 11111111 12223221 100 012234569999999999999999999999998885
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=219.89 Aligned_cols=261 Identities=14% Similarity=0.115 Sum_probs=188.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.||..+|..|+++| ++|++|||++++++.+.+.| +..+++++++++++|+||+||
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAG--CSVTIWNRSPEKAEELAALG--------------AERAATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSGGGGHHHHHTT--------------CEECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEeecHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHhcCCEEEEEc
Confidence 79999999999999999999999 99999999999988888754 356678999889999999999
Q ss_pred c-hhcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 208 P-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 208 p-~~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
| ...+++++ +++.+.+++++++|++++ +.+.+.+.+.+.+.+. |. .++..|...........+..++.+
T Consensus 66 p~~~~~~~v~~~~~~l~~~l~~~~~vi~~st-~~~~~~~~~~~~~~~~-g~-----~~~~~pv~g~~~~a~~g~l~~~~g 138 (287)
T 3pef_A 66 ADPAAAEEVCFGKHGVLEGIGEGRGYVDMST-VDPATSQRIGVAVVAK-GG-----RFLEAPVSGSKKPAEDGTLIILAA 138 (287)
T ss_dssp SSHHHHHHHHHSTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHT-TC-----EEEECCEECCHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHcCcchHhhcCCCCCEEEeCCC-CCHHHHHHHHHHHHHh-CC-----EEEECCCcCCHHHHhcCCEEEEEe
Confidence 9 56788988 888888999999999864 6666555566666543 32 233344433221111123334555
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
++.+.+++++++|+..|.+++..++....++.|++. |.+......+++|+..++++.|+++++
T Consensus 139 g~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~-----------------N~~~~~~~~~~~E~~~l~~~~G~d~~~ 201 (287)
T 3pef_A 139 GDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVV-----------------NMVMGGMMACFCEGLALGEKAGLATDA 201 (287)
T ss_dssp ECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 688999999999999998888887765555555444 445556678899999999999999998
Q ss_pred cccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 364 ~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
+.++.+.+. +.+...++ .+..+.++.... ......+.||+++++++|+++|+++|+++.++++++
T Consensus 202 ~~~~~~~~~----~~s~~~~~--~~~~~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 266 (287)
T 3pef_A 202 ILDVIGAGA----MANPMFAL--KGGLIRDRNFAP-----AFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFK 266 (287)
T ss_dssp HHHHHHHST----TCCHHHHH--HHHHHHTTCCCC-----SSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHhcc----cccHHHHH--HhhhhhcCCCCC-----CCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 877532111 11111111 233333321000 012234569999999999999999999999999885
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=210.38 Aligned_cols=259 Identities=19% Similarity=0.208 Sum_probs=182.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+|||+|||+|.||..++..|++.| ++|++|+|++++++.+.+.| +..+++++++++++|+||+|
T Consensus 5 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~D~vi~~ 68 (299)
T 1vpd_A 5 TMKVGFIGLGIMGKPMSKNLLKAG--YSLVVSDRNPEAIADVIAAG--------------AETASTAKAIAEQCDVIITM 68 (299)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTT--------------CEECSSHHHHHHHCSEEEEC
T ss_pred cceEEEECchHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHCC--------------CeecCCHHHHHhCCCEEEEE
Confidence 379999999999999999999998 89999999999888887754 24556788888899999999
Q ss_pred cc-hhcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MP-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp-~~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
+| ...++.++ +++.+.++++++||++++|... +.+.+.+.+.+. | ..++..|..............++.
T Consensus 69 v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~-~~~~l~~~~~~~-g-----~~~~~~pv~~~~~~~~~~~~~~~~ 141 (299)
T 1vpd_A 69 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPL-ASREISDALKAK-G-----VEMLDAPVSGGEPKAIDGTLSVMV 141 (299)
T ss_dssp CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHH-HHHHHHHHHHTT-T-----CEEEECCEESHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHH-HHHHHHHHHHHc-C-----CeEEEecCCCCHhHHhcCCEEEEe
Confidence 99 56688888 6788888899999999987642 223444444332 2 234445554332211111223444
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
+++.+.++.++++|+..|.++++.++.....|.|++.| ....++..++.|+..++++.|++++
T Consensus 142 ~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n-----------------~~~~~~~~~~~Ea~~l~~~~G~~~~ 204 (299)
T 1vpd_A 142 GGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQ-----------------VIVALNIAAMSEALTLATKAGVNPD 204 (299)
T ss_dssp ESCHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 55888999999999999999888877666666665444 4566778999999999999999998
Q ss_pred ccccccCCCceeeecccCCCccc--hHHH-HhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 363 TITGLSGTGDIMLTCFVNLSRNR--TVGV-RLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 363 ~~~~~~~~gd~~~t~~s~~srn~--~~g~-~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
++.++...+... +.. ..++ ++.. +...|+.++. ..||++.++++|+++|+++|+++.++++++
T Consensus 205 ~~~~~~~~~~~~--s~~--~~~~~~~~l~~~~~~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~ 270 (299)
T 1vpd_A 205 LVYQAIRGGLAG--STV--LDAKAPMVMDRNFKPGFRIDL----------HIKDLANALDTSHGVGAQLPLTAAVMEMMQ 270 (299)
T ss_dssp HHHHHHTTSTTC--CHH--HHHHHHHHHTTCCCCSSBHHH----------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHccCCC--CHH--HHHhhhHhhcCCCCCCCChHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 877653222100 000 0000 0100 0112333332 237899999999999999999999999886
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=207.90 Aligned_cols=260 Identities=15% Similarity=0.207 Sum_probs=183.3
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+++|||+|||+|.||..++..|++.| ++|++|+|++++++.+.+.| +..+++++++++++|+|
T Consensus 1 M~~~~~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~D~v 64 (301)
T 3cky_A 1 MEKSIKIGFIGLGAMGKPMAINLLKEG--VTVYAFDLMEANVAAVVAQG--------------AQACENNQKVAAASDII 64 (301)
T ss_dssp ---CCEEEEECCCTTHHHHHHHHHHTT--CEEEEECSSHHHHHHHHTTT--------------CEECSSHHHHHHHCSEE
T ss_pred CCCCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHCC--------------CeecCCHHHHHhCCCEE
Confidence 445689999999999999999999998 89999999999888887653 24556788888899999
Q ss_pred EEccc-hhcHHHHHH---HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEE
Q 012596 204 LHAMP-VQFSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAM 279 (460)
Q Consensus 204 ilaVp-~~~~~~vl~---~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i 279 (460)
|+|+| ..+++.++. ++.+.++++++||++++|... +.+.+.+.+.+. + ..++..|..............
T Consensus 65 i~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~-~~~~l~~~~~~~-g-----~~~~~~p~~~~~~~a~~g~~~ 137 (301)
T 3cky_A 65 FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPS-STLKMAKVAAEK-G-----IDYVDAPVSGGTKGAEAGTLT 137 (301)
T ss_dssp EECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHH-HHHHHHHHHHHT-T-----CEEEECCEESHHHHHHHTCEE
T ss_pred EEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHH-HHHHHHHHHHHc-C-----CeEEEccCCCCHHHHHcCCeE
Confidence 99997 456888885 788888899999999987632 223444554432 2 223345554433211112222
Q ss_pred EEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 012596 280 VVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA 359 (460)
Q Consensus 280 ~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi 359 (460)
++.+++.+.++.++++|+..|.++++.++.....|.|++.| ....++..++.|+..++++.|+
T Consensus 138 ~~~~g~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N-----------------~~~~~~~~~~~Ea~~l~~~~G~ 200 (301)
T 3cky_A 138 IMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNN-----------------LLLGCNMASLAEALVLGVKCGL 200 (301)
T ss_dssp EEEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHcCC
Confidence 33445888999999999999988877666555556665444 4566677899999999999999
Q ss_pred CccccccccC---CCceee--ecc-cCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHH
Q 012596 360 KPATITGLSG---TGDIML--TCF-VNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA 433 (460)
Q Consensus 360 ~~~~~~~~~~---~gd~~~--t~~-s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~ 433 (460)
+++++.++.. .++... .+. +...++++ .|+.++. ..||++.++++++++|+++|+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~ 264 (301)
T 3cky_A 201 KPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFA------GGFAMDL----------QHKDLGLALEAGKEGNVPLPMTAM 264 (301)
T ss_dssp CHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCS------SSSBHHH----------HHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCC------CCccHHH----------HHHHHHHHHHHHHHhCCCChHHHH
Confidence 9887765421 111111 122 23333332 2334432 247899999999999999999999
Q ss_pred HHHHHh
Q 012596 434 VARIID 439 (460)
Q Consensus 434 v~~ll~ 439 (460)
++++++
T Consensus 265 ~~~~~~ 270 (301)
T 3cky_A 265 ATQIFE 270 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=212.24 Aligned_cols=262 Identities=13% Similarity=0.117 Sum_probs=181.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.||.++|..|+++| ++|++|+|++++++.+.+.| +..+++++++++++|+||+|+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~Dvvi~~v 64 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHG--YPLIIYDVFPDACKEFQDAG--------------EQVVSSPADVAEKADRIITML 64 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTT--CCEEEECSSTHHHHHHHTTT--------------CEECSSHHHHHHHCSEEEECC
T ss_pred CeEEEEeccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEEeC
Confidence 68999999999999999999999 89999999999888887654 345568888888999999999
Q ss_pred c-hhcHHHHHHHh---hhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 208 P-VQFSSSFLEGI---SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 208 p-~~~~~~vl~~i---~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
| +..++.++.++ .+.+++++++|+ .+|+.+++.+.+.+.+.+. +. .+...|........+.....++.+
T Consensus 65 p~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~-g~-----~~~~~p~~~g~~~a~~~~~~~~~~ 137 (296)
T 2gf2_A 65 PTSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM-GA-----VFMDAPVSGGVGAARSGNLTFMVG 137 (296)
T ss_dssp SSHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT-TC-----EEEECCEESHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc-CC-----EEEEcCCCCChhHHhcCcEEEEeC
Confidence 6 56788888764 456788999999 6788887555555555442 21 233445443322122222334445
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
.+.+.++.++++|+..|..++...+.. .+...|+.+|.+..+...++.|+..++++.|+++++
T Consensus 138 ~~~~~~~~v~~l~~~~g~~~~~~~~~g-----------------~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~ 200 (296)
T 2gf2_A 138 GVEDEFAAAQELLGCMGSNVVYCGAVG-----------------TGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKL 200 (296)
T ss_dssp SCGGGHHHHHHHHTTTEEEEEEEESTT-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCcc-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 678889999999999998877655421 222334455666677788999999999999999887
Q ss_pred cccccCCCc---eeeecccCC---CccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 364 ITGLSGTGD---IMLTCFVNL---SRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 364 ~~~~~~~gd---~~~t~~s~~---srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
+.++...++ .+..+.... .+....+.+...|++.+. ..||+++++++|+++|+++|+++.++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~~~~~ 270 (296)
T 2gf2_A 201 LAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTL----------MAKDLGLAQDSATSTKSPILLGSLAHQI 270 (296)
T ss_dssp HHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHH----------HHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 766422111 111111100 000011223333444432 3489999999999999999999999999
Q ss_pred Hh
Q 012596 438 ID 439 (460)
Q Consensus 438 l~ 439 (460)
++
T Consensus 271 ~~ 272 (296)
T 2gf2_A 271 YR 272 (296)
T ss_dssp HH
T ss_pred HH
Confidence 86
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=217.28 Aligned_cols=248 Identities=14% Similarity=0.117 Sum_probs=173.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALL 198 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-------~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~ 198 (460)
+|||+|||+|.||.++|..|+++|. ++|++|||++ +..+.+.+.| + ++ ++.++++
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~~~~~~g--------------~--~~~s~~e~~~ 86 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNA-ARLAAYDLRFNDPAASGALRARAAELG--------------V--EPLDDVAGIA 86 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-SEEEEECGGGGCTTTHHHHHHHHHHTT--------------C--EEESSGGGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCC-CeEEEEeCCCccccchHHHHHHHHHCC--------------C--CCCCHHHHHh
Confidence 5899999999999999999999872 6999999997 4555555433 2 34 6778889
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeE
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA 278 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~ 278 (460)
+||+||+|||.....++++++.+.++++++||+++ ++.+.+.+.+.+.+.+. |..+.. +.+.||..+. .+..+
T Consensus 87 ~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~~-g~~~~d-~pv~g~~~a~---~g~l~- 159 (317)
T 4ezb_A 87 CADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIATG-KGSFVE-GAVMARVPPY---AEKVP- 159 (317)
T ss_dssp GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHTS-SCEEEE-EEECSCSTTT---GGGSE-
T ss_pred cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHHc-CCeEEe-ccCCCCchhh---cCCEE-
Confidence 99999999999887778899999999999999988 47776666666666543 322122 2455665432 34433
Q ss_pred EEEccCCHHHHHHHHHHHhcCCceEEEcCC-hHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHc
Q 012596 279 MVVASKDRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM 357 (460)
Q Consensus 279 i~i~~~d~~~~~~l~~lL~~~g~~v~~~~D-i~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~ 357 (460)
+++++.+ + ++++++|+..|.++...++ +...++. |+.+|.+.....++++|+..++++.
T Consensus 160 i~vgg~~-~--~~~~~ll~~~g~~v~~~g~~~g~a~~~-----------------Kl~~N~~~~~~~~~~~E~~~la~~~ 219 (317)
T 4ezb_A 160 ILVAGRR-A--VEVAERLNALGMNLEAVGETPGQASSL-----------------KMIRSVMIKGVEALLIEALSSAERA 219 (317)
T ss_dssp EEEESTT-H--HHHHHHHHTTTCEEEEEESSTTHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCh-H--HHHHHHHHHhCCCeEEeCCCcCHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555544 3 8999999999988887776 5444444 4455666677788999999999999
Q ss_pred CCCccccccccC-C-C-ceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHH
Q 012596 358 GAKPATITGLSG-T-G-DIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV 434 (460)
Q Consensus 358 Gi~~~~~~~~~~-~-g-d~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v 434 (460)
|++++.+..+.+ . + +....+....++++..|+. ..||+++++++|+++|+++|+.+.+
T Consensus 220 Gid~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~-------------------~~KDl~~~~~~a~~~g~~~pl~~~~ 280 (317)
T 4ezb_A 220 GVTERILDSVQETFPGLDWRDVADYYLSRTFEHGAR-------------------RVTEMTEAAETIESFGLNAPMSRAA 280 (317)
T ss_dssp TCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CCCHHHHHHHHhcCccccHHHhhhhhhcCCCCCCcc-------------------hHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999964433311 1 1 0000000001111111111 1489999999999999999999999
Q ss_pred HHH
Q 012596 435 ARI 437 (460)
Q Consensus 435 ~~l 437 (460)
+++
T Consensus 281 ~~~ 283 (317)
T 4ezb_A 281 CET 283 (317)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=221.48 Aligned_cols=285 Identities=18% Similarity=0.153 Sum_probs=209.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--C-----CCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L-----PENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~--l-----~~~i~a~~~~~ea~~~a 200 (460)
|||+|||+|+||.++|..|+++| ++|++||+++++++.+++.+ ...+.++.. + ...+.+++++++++++|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G--~~V~~~d~~~~~~~~l~~~~-~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~a 77 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGK-SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDS 77 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHhCCC-CCcCCCCHHHHHHhhcccCceEEeCCHHHHhccC
Confidence 68999999999999999999999 99999999999999988754 223333221 0 22477888998888999
Q ss_pred cEEEEccchhc----------HHHHHHHhhhcCCC---CCeEEEeccCCccch-hhhHHHHHHHHhCCCC-CCEEEEECc
Q 012596 201 DYCLHAMPVQF----------SSSFLEGISDYVDP---GLPFISLSKGLELNT-LRMMSQIIPQALRNPR-QPFIALSGP 265 (460)
Q Consensus 201 DiVilaVp~~~----------~~~vl~~i~~~l~~---~~iIV~~~~Gi~~~~-~~~l~e~l~~~lg~~~-~~~~v~~gP 265 (460)
|+||+|||... +.+++++|.+.+++ +++||..+ ++.+.+ .+.+.+.+.+..+... ..+.+..+|
T Consensus 78 DvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S-tv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~P 156 (436)
T 1mv8_A 78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP 156 (436)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred CEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC-CcCCCchHHHHHHHHHHhcCcccCCcEEEEECc
Confidence 99999999765 89999999998888 89998876 466665 5667777766544321 346678888
Q ss_pred ccHHHHh----ccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 012596 266 SFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA 341 (460)
Q Consensus 266 ~~a~e~~----~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~a 341 (460)
.+..+.. ...+..+++++.+.+..+.++++|+..+..+.. .|+...+|.|++.|. +.+
T Consensus 157 e~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~-----------------~~a 218 (436)
T 1mv8_A 157 EFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNV-----------------WHA 218 (436)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHH-----------------HHH
T ss_pred ccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHH-----------------HHH
Confidence 8765321 123334567766688889999999998887766 788888888776654 455
Q ss_pred HHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHH
Q 012596 342 LVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALA 421 (460)
Q Consensus 342 l~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA 421 (460)
+..++++|+..+|++.|++++++.+..+....+. ..++++..|..+ .|.+. .||.++++++|
T Consensus 219 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~r~~----~~~~~~~pg~g~-gg~~~-------------~kD~~~l~~~a 280 (436)
T 1mv8_A 219 AKVTFANEIGNIAKAVGVDGREVMDVICQDHKLN----LSRYYMRPGFAF-GGSCL-------------PKDVRALTYRA 280 (436)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTT----TSSTTCSCCSCC-CSSSH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC----CcccCCCCcccc-cCcCc-------------HhhHHHHHHHH
Confidence 6678999999999999999887776543311010 001222222211 12232 27899999999
Q ss_pred HHcCCCChHHHHHHHHHhcCCCHHHHHHHHhcC
Q 012596 422 QKYNVKMPVLTAVARIIDNELTPKKAVLELMSL 454 (460)
Q Consensus 422 ~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~ 454 (460)
+++|+++|++++++++ ++..+..+++.++.+
T Consensus 281 ~~~g~~~pl~~~v~~i--n~~~~~~~~~~~~~~ 311 (436)
T 1mv8_A 281 SQLDVEHPMLGSLMRS--NSNQVQKAFDLITSH 311 (436)
T ss_dssp HHTTCCCTTGGGHHHH--HHHHHHHHHHHHTTS
T ss_pred HHcCCCcHHHHHHHHH--HhHhHHHHHHHHHHh
Confidence 9999999999999998 566788888888765
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=214.13 Aligned_cols=255 Identities=13% Similarity=0.080 Sum_probs=175.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC--HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~--~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
.+|||+|||+|.||.+||..|+++| + +|++|||+ ++..+.+.+.| +..++++.++++++|+
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G--~~~V~~~dr~~~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDv 86 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAG--AIDMAAYDAASAESWRPRAEELG--------------VSCKASVAEVAGECDV 86 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHS--CCEEEEECSSCHHHHHHHHHHTT--------------CEECSCHHHHHHHCSE
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC--CCeEEEEcCCCCHHHHHHHHHCC--------------CEEeCCHHHHHhcCCE
Confidence 3689999999999999999999999 8 99999997 56777777654 3456788888899999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHh-CCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL-RNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~l-g~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
||+|||.....++++++.+.++++++||++++ +.+.+.+.+.+.+.+.. |..+... .+.||..+. .+.. .+++
T Consensus 87 Vi~~vp~~~~~~~~~~l~~~l~~~~ivvd~st-~~~~~~~~~~~~~~~~~~g~~~vd~-pv~g~~~~~---~g~l-~i~v 160 (312)
T 3qsg_A 87 IFSLVTAQAALEVAQQAGPHLCEGALYADFTS-CSPAVKRAIGDVISRHRPSAQYAAV-AVMSAVKPH---GHRV-PLVV 160 (312)
T ss_dssp EEECSCTTTHHHHHHHHGGGCCTTCEEEECCC-CCHHHHHHHHHHHHHHCTTCEEEEE-EECSCSTTT---GGGS-EEEE
T ss_pred EEEecCchhHHHHHHhhHhhcCCCCEEEEcCC-CCHHHHHHHHHHHHhhcCCCeEEec-cccCCchhh---cCCE-EEEe
Confidence 99999999888888999999999999999885 66666566666665542 3222222 234443322 3333 3445
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCC-hHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~D-i~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
++.+ + ++++++|+..|.++.+.++ +...++.|.+ +|.+......++.|++.++++.|++
T Consensus 161 gg~~-~--~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~-----------------~n~~~~~~~~~~~Ea~~la~~~Gld 220 (312)
T 3qsg_A 161 DGDG-A--RRFQAAFTLYGCRIEVLDGEVGGAALLKMC-----------------RSAVLKGLEALFLEALAAAEKMGLA 220 (312)
T ss_dssp ESTT-H--HHHHHHHHTTTCEEEECCSSTTHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred cCCh-H--HHHHHHHHHhCCCeEEcCCCCCHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5444 3 8999999999999888776 5444454443 4555566678899999999999999
Q ss_pred ccccccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 361 PATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 361 ~~~~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
++ +.+.... ... ++.+ ..+..+..+ +.... .. ..||+++++++++++|+++|+.+.+.++++
T Consensus 221 ~~-~~~~l~~------~~~--~~~~~~~~~~~~~~----~~~~g-~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~ 283 (312)
T 3qsg_A 221 DR-VLASLDA------SFP--EHHLRDLALYLVER----NLEHA-DR---RAHELGEVAATLCSVGVEPLVAEAGYRRLT 283 (312)
T ss_dssp HH-HHHHHHH------HSG--GGTHHHHHHHHHHH----HHHHH-HH---HHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HH-HHHHHHh------cCC--chhHHHhhhHhhcC----CCCcc-cc---hHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 84 5442100 000 1111 011111110 00000 00 148999999999999999999999998875
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-24 Score=210.67 Aligned_cols=260 Identities=14% Similarity=0.140 Sum_probs=180.7
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
++.+|||+|||+|.||..+|..|++.| ++|++|+|++++++.+.+.|. ..+.++.++++++|+|
T Consensus 27 ~~~~~~I~iIG~G~mG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~DvV 90 (316)
T 2uyy_A 27 TPTDKKIGFLGLGLMGSGIVSNLLKMG--HTVTVWNRTAEKCDLFIQEGA--------------RLGRTPAEVVSTCDIT 90 (316)
T ss_dssp CCCSSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSGGGGHHHHHTTC--------------EECSCHHHHHHHCSEE
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHcCC--------------EEcCCHHHHHhcCCEE
Confidence 334589999999999999999999998 899999999988888776542 3456787888899999
Q ss_pred EEccc-hhcHHHHHHHh---hhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH--HhccCCe
Q 012596 204 LHAMP-VQFSSSFLEGI---SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE--LMNKLPT 277 (460)
Q Consensus 204 ilaVp-~~~~~~vl~~i---~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e--~~~g~~~ 277 (460)
|+|+| ...+++++.++ .+.++++++||+++++ .+.+.+.+.+.+.+. + ..++.+|..... ...+. .
T Consensus 91 i~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~-~-----~~~v~~p~~g~~~~~~~g~-~ 162 (316)
T 2uyy_A 91 FACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTV-DADTVTELAQVIVSR-G-----GRFLEAPVSGNQQLSNDGM-L 162 (316)
T ss_dssp EECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCC-CHHHHHHHHHHHHHT-T-----CEEEECCEESCHHHHHHTC-E
T ss_pred EEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHc-C-----CEEEEcCccCChhHHhhCC-E
Confidence 99999 67888888764 4778889999999874 333333444444331 2 235555554322 22332 2
Q ss_pred EEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHc
Q 012596 278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM 357 (460)
Q Consensus 278 ~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~ 357 (460)
.++++ ++.+.+++++++|+..|..++..+++....|.|.+.|.+. .....++.|+..++++.
T Consensus 163 ~~~~~-g~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~-----------------~~~~~~~~Ea~~la~~~ 224 (316)
T 2uyy_A 163 VILAA-GDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ-----------------GSFMATIAEGLTLAQVT 224 (316)
T ss_dssp EEEEE-ECHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHT
T ss_pred EEEeC-CCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHc
Confidence 23334 4788899999999999999888877666667766665432 22567899999999999
Q ss_pred CCCccccccccCCCceeeecccCCCccc--hHH-HHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHH
Q 012596 358 GAKPATITGLSGTGDIMLTCFVNLSRNR--TVG-VRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV 434 (460)
Q Consensus 358 Gi~~~~~~~~~~~gd~~~t~~s~~srn~--~~g-~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v 434 (460)
|++++++.++...+... +...... ++. .+...|++++. ..||+++++++++++|+++|+++.+
T Consensus 225 G~~~~~~~~~~~~~~~~----s~~~~~~~~~~l~~~~~~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~v 290 (316)
T 2uyy_A 225 GQSQQTLLDILNQGQLA----SIFLDQKCQNILQGNFKPDFYLKY----------IQKDLRLAIALGDAVNHPTPMAAAA 290 (316)
T ss_dssp TCCHHHHHHHHHHSTTC----CHHHHHHHHHHHHTCCCCSSBHHH----------HHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCCHHHHHHHHHcCCCC----CHHHHHhhHHhhcCCCCCCCcHHH----------HHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99988776542111100 0000000 010 01122334432 2589999999999999999999999
Q ss_pred HHHHh
Q 012596 435 ARIID 439 (460)
Q Consensus 435 ~~ll~ 439 (460)
+++++
T Consensus 291 ~~~~~ 295 (316)
T 2uyy_A 291 NEVYK 295 (316)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99886
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=225.85 Aligned_cols=282 Identities=12% Similarity=0.097 Sum_probs=192.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDi 202 (460)
..++|+|||+|.||++||.+|+++| ++|++|+|++++++.+.+... + .++..++++++++++ +|+
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La~~G--~~V~v~~r~~~~~~~l~~~~~------~----~gi~~~~s~~e~v~~l~~aDv 81 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIESRG--YTVSIFNRSREKTEEVIAENP------G----KKLVPYYTVKEFVESLETPRR 81 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSHHHHHHHHHHST------T----SCEEECSSHHHHHHTBCSSCE
T ss_pred CCCeEEEEccHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHhhCC------C----CCeEEeCCHHHHHhCCCCCCE
Confidence 4579999999999999999999999 899999999999998877521 0 135677788888776 999
Q ss_pred EEEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH--hccCCeEE
Q 012596 203 CLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL--MNKLPTAM 279 (460)
Q Consensus 203 VilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~--~~g~~~~i 279 (460)
||+|||+ ..++++++++.+.++++++||+++||....+ ..+.+.+.+. |. .++.+|....+. ..|. .+
T Consensus 82 Vil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t-~~l~~~l~~~-g~-----~~v~~pv~gg~~~a~~g~--~i 152 (480)
T 2zyd_A 82 ILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDT-IRRNRELSAE-GF-----NFIGTGVSGGEEGALKGP--SI 152 (480)
T ss_dssp EEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HHHHHHHHHT-TC-----EEEEEEEESHHHHHHHCC--EE
T ss_pred EEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHH-HHHHHHHHHC-CC-----CeeCCccccCHhHHhcCC--eE
Confidence 9999998 5799999999999999999999999876543 2344555442 32 233444433322 2333 34
Q ss_pred EEccCCHHHHHHHHHHHhcCCce-------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHH
Q 012596 280 VVASKDRKLANAVQQLLASKHLR-------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW 352 (460)
Q Consensus 280 ~i~~~d~~~~~~l~~lL~~~g~~-------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~ 352 (460)
+. +++.+.++.++++|+..+.+ +.+.++. |.+..+|+++|.+..+..+++.|+..
T Consensus 153 ~~-gg~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~laEa~~ 214 (480)
T 2zyd_A 153 MP-GGQKEAYELVAPILTKIAAVAEDGEPCVTYIGAD-----------------GAGHYVKMVHNGIEYGDMQLIAEAYS 214 (480)
T ss_dssp EE-ESCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBST-----------------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ee-cCCHHHHHHHHHHHHHHhccccCCCceEEEECCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45789999999999987765 4444432 33444556677777888999999999
Q ss_pred HHHH-cCCCcccccccc-----C-CCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHH-HHHHHHHHc
Q 012596 353 LATK-MGAKPATITGLS-----G-TGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAG-AVIALAQKY 424 (460)
Q Consensus 353 la~a-~Gi~~~~~~~~~-----~-~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g-~vv~lA~~~ 424 (460)
++++ +|++++++.++. + +++.+.++++...+++. ...+..++.+.+.. +.|+.+ .++++|+++
T Consensus 215 l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d----~~~~~~v~~i~D~~-----~~k~tG~~~~~~A~~~ 285 (480)
T 2zyd_A 215 LLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKD----EDGNYLVDVILDEA-----ANKGTGKWTSQSALDL 285 (480)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHCBC----TTSSBGGGGBCCCC-----CCCSCTTHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhcCC----CCCcchHHHHHHHh-----cCchHHHHHHHHHHHc
Confidence 9999 799998887653 3 45555555543222111 11223333222111 113333 788999999
Q ss_pred CCCChHHHHH--HHHHhcCCCHHHHHHHHhcCC
Q 012596 425 NVKMPVLTAV--ARIIDNELTPKKAVLELMSLP 455 (460)
Q Consensus 425 gv~~P~~~~v--~~ll~~~~~~~~~~~~l~~~~ 455 (460)
|+++|+++.+ .+++....+.......+..-|
T Consensus 286 gv~~Pi~~~av~ar~~s~~k~~R~~~~~~~~g~ 318 (480)
T 2zyd_A 286 GEPLSLITESVFARYISSLKDQRVAASKVLSGP 318 (480)
T ss_dssp TCCCHHHHHHHHHHHHHTCHHHHHHHHTTCCCC
T ss_pred CCCCchHHHHHHHHhhhcchhhhHHhhcccCCC
Confidence 9999999874 555555444444444444333
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=221.24 Aligned_cols=276 Identities=14% Similarity=0.086 Sum_probs=200.4
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhc-CCCC-eEEEEeCCHH----HHHHHHhhcCCCc--cCCCCC-------CCCceE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANK-KSQL-KVYMLMRDPA----VCQSINEKHCNCR--YFPEQK-------LPENVI 188 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~-G~~~-~V~v~~r~~~----~~~~l~~~g~~~~--~~~~~~-------l~~~i~ 188 (460)
++++|||+|||+|.||.++|..|+++ | + +|++||++++ +++.+++.. ... |.++.. .+.++.
T Consensus 15 ~~~~mkIaVIGlG~mG~~lA~~la~~~G--~~~V~~~D~~~~~~~~kv~~l~~g~-~~i~~~e~gl~~l~~~~~~~g~l~ 91 (478)
T 3g79_A 15 RGPIKKIGVLGMGYVGIPAAVLFADAPC--FEKVLGFQRNSKSSGYKIEMLNRGE-SPLKGEEPGLEELIGKVVKAGKFE 91 (478)
T ss_dssp HCSCCEEEEECCSTTHHHHHHHHHHSTT--CCEEEEECCCCTTTTTHHHHHTTTC-CCSSCCGGGHHHHHHHHHHTTCEE
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHHhCC--CCeEEEEECChhHhHHHHHHHHhcC-CCccccCCCHHHHHHhhcccCCeE
Confidence 44679999999999999999999999 9 9 9999999999 999987633 322 333321 145688
Q ss_pred EeCCHHhhcCCCcEEEEccchhc------------HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHH-HHhCCC
Q 012596 189 ATTDAKTALLGADYCLHAMPVQF------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP-QALRNP 255 (460)
Q Consensus 189 a~~~~~ea~~~aDiVilaVp~~~------------~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~-~~lg~~ 255 (460)
++++ .+++++||+||+|||+.. +..+.++|.++++++++||..+ ++.+++.+.+.+.+. +..|..
T Consensus 92 ~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~pgtt~~v~~~ile~~~g~~ 169 (478)
T 3g79_A 92 CTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLES-TITPGTTEGMAKQILEEESGLK 169 (478)
T ss_dssp EESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECS-CCCTTTTTTHHHHHHHHHHCCC
T ss_pred EeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeC-CCChHHHHHHHHHHHHHhcCCC
Confidence 8888 567899999999999652 5667788999999999998887 699998888876443 444531
Q ss_pred -CCCEEEEECcccHHHHhc----cCCeEEEEccCCHHHHHHHHHHHhcC-CceEEEcCChHHHHHHHHHHHHHHHHHHHH
Q 012596 256 -RQPFIALSGPSFALELMN----KLPTAMVVASKDRKLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNVLAIAAGIV 329 (460)
Q Consensus 256 -~~~~~v~~gP~~a~e~~~----g~~~~i~i~~~d~~~~~~l~~lL~~~-g~~v~~~~Di~g~~~~kalkNv~ai~~g~~ 329 (460)
...+.++++|.++.+... ..+.. +++|.+.+.+++++++|+.. +..++...++...+..|++.
T Consensus 170 ~~~d~~v~~~Pe~~~~G~a~~~~~~~~~-Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~---------- 238 (478)
T 3g79_A 170 AGEDFALAHAPERVMVGRLLKNIREHDR-IVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAE---------- 238 (478)
T ss_dssp BTTTBEEEECCCCCCTTSHHHHHHHSCE-EEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHH----------
T ss_pred cCCceeEEeCCccCCccchhhhhcCCcE-EEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHH----------
Confidence 135789999987654221 12334 46777888899999999987 66677777877766666554
Q ss_pred hcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhccccee
Q 012596 330 VGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAE 409 (460)
Q Consensus 330 ~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~e 409 (460)
|.+.++..++++|+..+|++.|+|++.+.+..+... .. ....+.+.+|..+ .|..
T Consensus 239 -------N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~-~~---ri~~~~~~PG~G~-GG~c------------- 293 (478)
T 3g79_A 239 -------NTFRDLQIAAINQLALYCEAMGINVYDVRTGVDSLK-GE---GITRAVLWPGAGV-GGHC------------- 293 (478)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC-CS---SSCCCCCCCCSCC-CSSH-------------
T ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc-hh---hhccccCCCCCCc-chhh-------------
Confidence 456777889999999999999999988876532211 00 0011122222211 1111
Q ss_pred hhhhHHHHHHHHHHcCCC-------ChHHHHHHHHHhc
Q 012596 410 GVSTAGAVIALAQKYNVK-------MPVLTAVARIIDN 440 (460)
Q Consensus 410 g~kd~g~vv~lA~~~gv~-------~P~~~~v~~ll~~ 440 (460)
..||.++++..|+++|++ .|+.+++.++-..
T Consensus 294 ~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~~iN~~ 331 (478)
T 3g79_A 294 LTKDTYHLERGVKIGRGELDYPEGADSIYVLARKVNDF 331 (478)
T ss_dssp HHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccccchhHHHHHHHHHHHH
Confidence 238999999999999987 8999999988543
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=202.62 Aligned_cols=252 Identities=15% Similarity=0.137 Sum_probs=176.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||||+|||+|.||..+|..|++ | ++|++|+|++++++.+.+.|. ..++ +.++++++|+||+|
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g--~~V~~~~~~~~~~~~~~~~g~--------------~~~~-~~~~~~~~D~vi~~ 62 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-R--FPTLVWNRTFEKALRHQEEFG--------------SEAV-PLERVAEARVIFTC 62 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-T--SCEEEECSSTHHHHHHHHHHC--------------CEEC-CGGGGGGCSEEEEC
T ss_pred CCeEEEEcccHHHHHHHHHHhC-C--CeEEEEeCCHHHHHHHHHCCC--------------cccC-HHHHHhCCCEEEEe
Confidence 4789999999999999999999 8 899999999998888877653 1233 56677899999999
Q ss_pred cchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH--HhccCCeEEEEcc
Q 012596 207 MPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE--LMNKLPTAMVVAS 283 (460)
Q Consensus 207 Vp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e--~~~g~~~~i~i~~ 283 (460)
+|... ++++++++.+.+++++++|+++++. +.+.+.+.+.+.+. ...++..|..... ...|.. .++.+
T Consensus 63 v~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~------g~~~~~~p~~~~~~~~~~g~~--~~~~~ 133 (289)
T 2cvz_A 63 LPTTREVYEVAEALYPYLREGTYWVDATSGE-PEASRRLAERLREK------GVTYLDAPVSGGTSGAEAGTL--TVMLG 133 (289)
T ss_dssp CSSHHHHHHHHHHHTTTCCTTEEEEECSCCC-HHHHHHHHHHHHTT------TEEEEECCEESHHHHHHHTCE--EEEEE
T ss_pred CCChHHHHHHHHHHHhhCCCCCEEEECCCCC-HHHHHHHHHHHHHc------CCEEEEecCCCChhHHhhCCe--EEEEC
Confidence 99764 8889999988888899999988743 22223344444331 2334455643322 223332 23345
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
++.+.++.++++| ..|.+++..++.....|.|...| ....++..++.|+..++++.|+++++
T Consensus 134 ~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n-----------------~~~~~~~~~~~Ea~~l~~~~G~~~~~ 195 (289)
T 2cvz_A 134 GPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINN-----------------ALLAVNLWAAGEGLLALVKQGVSAEK 195 (289)
T ss_dssp SCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHcCcCHHH
Confidence 6888999999999 99988777777655556654444 44567789999999999999999887
Q ss_pred cccccCCCce---eeec--c-cCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 364 ITGLSGTGDI---MLTC--F-VNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 364 ~~~~~~~gd~---~~t~--~-s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
+.++...+.. +... . +...+++ ..|++++. ..||++.++++++++|+++|++++++++
T Consensus 196 ~~~~~~~~~~~s~~~~~~~~~~~l~~~~------~~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~v~~~ 259 (289)
T 2cvz_A 196 ALEVINASSGRSNATENLIPQRVLTRAF------PKTFALGL----------LVKDLGIAMGVLDGEKAPSPLLRLAREV 259 (289)
T ss_dssp HHHHHTTSTTCBHHHHHTHHHHTTTSCC------CCSSBHHH----------HHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHhccchhhcCCC------CCCcChHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 7665322210 0000 0 1111111 12333332 3478999999999999999999999998
Q ss_pred Hh
Q 012596 438 ID 439 (460)
Q Consensus 438 l~ 439 (460)
++
T Consensus 260 ~~ 261 (289)
T 2cvz_A 260 YE 261 (289)
T ss_dssp HH
T ss_pred HH
Confidence 86
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-24 Score=220.58 Aligned_cols=303 Identities=12% Similarity=0.120 Sum_probs=183.2
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEe---CCHHHHHHH-HhhcC--CCccCCC--CCCCCceE-EeCCHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLM---RDPAVCQSI-NEKHC--NCRYFPE--QKLPENVI-ATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~---r~~~~~~~l-~~~g~--~~~~~~~--~~l~~~i~-a~~~~~ea 196 (460)
+|||+|||+|+||+++|..|++ +| ++|++|+ |++++++.+ ++.|. +..+.++ ..++..+. ++++++++
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G--~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 79 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDG--VEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIA 79 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTT--EEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC--CEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHH
Confidence 4799999999999999999998 58 9999999 887778774 33332 1112222 11122233 67788888
Q ss_pred cCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc--cchhhhHHHHHHHH-h-CCCCCC-EEEEECcccHHHH
Q 012596 197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE--LNTLRMMSQIIPQA-L-RNPRQP-FIALSGPSFALEL 271 (460)
Q Consensus 197 ~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~--~~~~~~l~e~l~~~-l-g~~~~~-~~v~~gP~~a~e~ 271 (460)
++++|+||+|||+....+++++|.++++++++|++++++.+ ......+.+...+. + +....+ .+.+.||+++.+.
T Consensus 80 ~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~v~~ 159 (404)
T 3c7a_A 80 ISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQCRDILGDKAAAVSMMSFETLPWACRIKEFGRKVEV 159 (404)
T ss_dssp HTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTTHHHHHHHHHGGGGGTSEEEEESSCSEEEEEEETTTEEEE
T ss_pred hCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCccHHHHHHHHHHhcCCCeEEEEecCchHhhcccCCCcEEEE
Confidence 89999999999999999999999999999999999654443 22111222211111 1 100122 3556778754333
Q ss_pred hccCCeEEEEccC--CHHHHHHHHHHHhcCCc-e-EEEcCChHHHHHHHHHHHHHHHHHHHHhcc------c------CC
Q 012596 272 MNKLPTAMVVASK--DRKLANAVQQLLASKHL-R-ISTSSDVTGVEIAGALKNVLAIAAGIVVGM------N------LG 335 (460)
Q Consensus 272 ~~g~~~~i~i~~~--d~~~~~~l~~lL~~~g~-~-v~~~~Di~g~~~~kalkNv~ai~~g~~~~~------k------l~ 335 (460)
..+.. .+.++.. +.+..+++.++|...+. . +..++|+.+.+|.. |++.++.++..+. . +.
T Consensus 160 ~~~~~-~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~di~~~~l~~---N~~~~~~~~l~~~~~~~g~~~~~~~~~~ 235 (404)
T 3c7a_A 160 LGTKS-VLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMS---YSFVHPAILFGRWGSWDGKPVPEAPLFY 235 (404)
T ss_dssp EEECS-EEEEEEECCSSCCSCHHHHHHHHHCSSSEEEECSCHHHHHHTT---CTTHHHHHHHHHHTTCCSCCBSSCCBSG
T ss_pred EEECc-eEEEEEccCCcchHHHHHHHHHHhCCCCceeEcCCEeeeeecC---CceeccHHHHHHHHhhhcCCCCCCCccc
Confidence 22221 1222211 11222345555555554 3 67899999888773 6655544444222 1 33
Q ss_pred C---cHHHHHHHHHHHHHHHHHHHc-----CCCccccccccCCCceeeecccCCCccc-hHHHHhhCC-------CC---
Q 012596 336 N---NSMAALVAQGCSEIRWLATKM-----GAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSG-------EK--- 396 (460)
Q Consensus 336 ~---n~~~al~~~~~~E~~~la~a~-----Gi~~~~~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g-------~~--- 396 (460)
. +....++.+++.|+.++++++ |+++.++. ++++.+.+++.....++ ++...+... +|
T Consensus 236 ~~~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~~~~~---~~~d~~~~~~~~~~~~~~s~~~~~~~~~~~~d~~~P~~~ 312 (404)
T 3c7a_A 236 QGIDQATADMLTACSNECKDVANAIMAACPGNDLSDVK---DIYQWYLEYYHEDIQDDHDLYHAITTNKSYKGLVHPVKA 312 (404)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCTTCC---CHHHHHHHHSTTTBSCCSSHHHHHHTBGGGTTCBCCEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCC---CHHHHHHHhCCCccCChhhHHHHHHhhhhhccCCCCCCC
Confidence 3 357799999999999999999 99975441 22233333332111111 111111110 01
Q ss_pred hHHH----Hhhcccceehh-hhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 397 LDDI----LSSMNQVAEGV-STAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 397 ~e~~----~~~~~~~~eg~-kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
.| + ....+...|++ ..++.++++|+++||++|+++++|++++
T Consensus 313 te-~~~~~d~~~r~~~Edv~~~~~~v~~la~~~gV~tP~~~~l~~l~~ 359 (404)
T 3c7a_A 313 VD-GGVAPDFGNRYLTEDIPMGMIVFKGVAIAAGVAIPSNDKLIMWAQ 359 (404)
T ss_dssp ET-TEEEECCCSSTTTTTTTTTHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred cC-CCccCCccccccccccccchHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 00 0 00123455634 4789999999999999999999999975
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=203.70 Aligned_cols=256 Identities=15% Similarity=0.133 Sum_probs=179.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+||||+|||+|.||..+|..|++.| ++|++|+ ++++++.+.+.|. ..+++++++++++|+||+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~-~~~~~~~~~~~g~--------------~~~~~~~~~~~~~D~vi~ 64 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAG--HQLHVTT-IGPVADELLSLGA--------------VNVETARQVTEFADIIFI 64 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTT--CEEEECC-SSCCCHHHHTTTC--------------BCCSSHHHHHHTCSEEEE
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCC--CEEEEEc-CHHHHHHHHHcCC--------------cccCCHHHHHhcCCEEEE
Confidence 4589999999999999999999998 8999999 8877777776542 234578888889999999
Q ss_pred ccchhc-HHHHHH---HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH--hccCCeEE
Q 012596 206 AMPVQF-SSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL--MNKLPTAM 279 (460)
Q Consensus 206 aVp~~~-~~~vl~---~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~--~~g~~~~i 279 (460)
|+|... ++.++. ++.+.++++++||++++|.. .+.+.+.+.+.+. ...++..|...... ..+.. .+
T Consensus 65 ~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~~~~~l~~~~~~~------g~~~~~~p~~~~~~~a~~g~~-~~ 136 (295)
T 1yb4_A 65 MVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISP-IETKRFAQRVNEM------GADYLDAPVSGGEIGAREGTL-SI 136 (295)
T ss_dssp CCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCH-HHHHHHHHHHHTT------TEEEEECCEESHHHHHHHTCE-EE
T ss_pred ECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCH-HHHHHHHHHHHHc------CCeEEEccCCCCHHHHHcCCe-EE
Confidence 998654 888887 78888889999999998642 2223444444331 23344555543321 13332 23
Q ss_pred EEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 012596 280 VVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA 359 (460)
Q Consensus 280 ~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi 359 (460)
++ +++.+.+++++++|+..|.++++.++.....|.|++.|. ...++..++.|+..++++.|+
T Consensus 137 ~~-~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~-----------------~~~~~~~~~~E~~~l~~~~G~ 198 (295)
T 1yb4_A 137 MV-GGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQI-----------------IVALNIEAVSEALVFASKAGA 198 (295)
T ss_dssp EE-ESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred EE-CCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHcCC
Confidence 34 458888999999999999888877776666676665553 445667899999999999999
Q ss_pred CccccccccCCCceeeecccCCCccchHHHHhh----CCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHH
Q 012596 360 KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG----SGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVA 435 (460)
Q Consensus 360 ~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~----~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~ 435 (460)
+++++.++...+.. .+. ..++ ..+..+. .|++.+. ..||+++++++++++|+++|++++++
T Consensus 199 ~~~~~~~~~~~~~~--~s~--~~~~-~~~~~~~~~~~~g~~~~~----------~~kd~~~~~~~a~~~g~~~p~~~~~~ 263 (295)
T 1yb4_A 199 DPVRVRQALMGGFA--SSR--ILEV-HGERMINRTFEPGFKIAL----------HQKDLNLALQSAKALALNLPNTATCQ 263 (295)
T ss_dssp CHHHHHHHHTSSSS--CBH--HHHH-HHHHHHTTCCCCSSBHHH----------HHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHcCCC--CCH--HHHH-hhHHHhcCCCCCCCchHH----------HHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 98877664322210 000 0011 1112221 2344432 34899999999999999999999999
Q ss_pred HHHh
Q 012596 436 RIID 439 (460)
Q Consensus 436 ~ll~ 439 (460)
++++
T Consensus 264 ~~~~ 267 (295)
T 1yb4_A 264 ELFN 267 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=200.77 Aligned_cols=287 Identities=19% Similarity=0.160 Sum_probs=176.3
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCC--CCce-EEeCCHHhhcCCC
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL--PENV-IATTDAKTALLGA 200 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l--~~~i-~a~~~~~ea~~~a 200 (460)
||++|||+|||+|+||+.+|..|+++| ++|++|+|++++++.+++.+. . ++.+... ...+ .++++++++++++
T Consensus 1 mm~~mki~iiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 1bg6_A 1 MIESKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGA-I-IAEGPGLAGTAHPDLLTSDIGLAVKDA 76 (359)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHTS-E-EEESSSCCEEECCSEEESCHHHHHTTC
T ss_pred CCCcCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHhcCC-e-EEeccccccccccceecCCHHHHHhcC
Confidence 456689999999999999999999999 899999999999998887631 0 1111101 0112 3567888888899
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--------CCCEEE-EECcccHHHH
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--------RQPFIA-LSGPSFALEL 271 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--------~~~~~v-~~gP~~a~e~ 271 (460)
|+||+|||+....++++++.+.++++++||+++ |+..++. .+.+.+.+. +.. ..+... ..||+++...
T Consensus 77 D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~-~~~~~~~-~~~~~l~~~-~~~~v~~~~~~~~~~~~~~~gpg~v~~~ 153 (359)
T 1bg6_A 77 DVILIVVPAIHHASIAANIASYISEGQLIILNP-GATGGAL-EFRKILREN-GAPEVTIGETSSMLFTCRSERPGQVTVN 153 (359)
T ss_dssp SEEEECSCGGGHHHHHHHHGGGCCTTCEEEESS-CCSSHHH-HHHHHHHHT-TCCCCEEEEESSCSEEEECSSTTEEEEE
T ss_pred CEEEEeCCchHHHHHHHHHHHhCCCCCEEEEcC-CCchHHH-HHHHHHHhc-CCCCeEEEEecCCcEEEEeCCCCEEEEE
Confidence 999999999999999999999999999999884 4433322 234444432 210 012222 2455433311
Q ss_pred hccCCeEEEEc----cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHH--------HHHHHh--cccCC--
Q 012596 272 MNKLPTAMVVA----SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAI--------AAGIVV--GMNLG-- 335 (460)
Q Consensus 272 ~~g~~~~i~i~----~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai--------~~g~~~--~~kl~-- 335 (460)
.. . ..+.++ +.+.+.++.++++|.. +...+|+ |.|+++|+.++ .++... +..+.
T Consensus 154 ~~-~-~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~~di----~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~ 223 (359)
T 1bg6_A 154 AI-K-GAMDFACLPAAKAGWALEQIGSVLPQ----YVAVENV----LHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYL 223 (359)
T ss_dssp EE-C-SCEEEEEESGGGHHHHHHHHTTTCTT----EEECSCH----HHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHH
T ss_pred Ee-e-cceEEEeccccccHHHHHHHHHHhhh----cEEcCCh----HhhhccCCCccccHHHHHhhhchhhcCCccchhh
Confidence 10 0 111222 3344567788888754 2345664 78888775333 122221 01111
Q ss_pred ---CcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccC---CCccchHHHHhhCCCChHHHHhhccccee
Q 012596 336 ---NNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVN---LSRNRTVGVRLGSGEKLDDILSSMNQVAE 409 (460)
Q Consensus 336 ---~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~---~srn~~~g~~l~~g~~~e~~~~~~~~~~e 409 (460)
.+....++.++++|+.++++++|++++++.+........ .... ..+..++.+|+. ++.| ++
T Consensus 224 ~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~--~~~~l~~~~~~~sm~~d~~--~~~e---------~~ 290 (359)
T 1bg6_A 224 EGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQ--SPATIYEAVQGNPAYRGIA--GPIN---------LN 290 (359)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC---------CCSHHHHHHTCGGGTTCB--CCSS---------SC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCC--CcccHHHHHhcchhhcCCC--CCCC---------CC
Confidence 445678899999999999999999987665531110000 0000 000112223332 1221 11
Q ss_pred h---hhh----HHHHHHHHHHcCCCChHHHHHHHHHhc
Q 012596 410 G---VST----AGAVIALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 410 g---~kd----~g~vv~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
. .+| +++++++|+++|+++|+++.++++++.
T Consensus 291 ~~~~~~D~~~~~g~~~~~a~~~gv~~P~~~~l~~~~~~ 328 (359)
T 1bg6_A 291 TRYFFEDVSTGLVPLSELGRAVNVPTPLIDAVLDLISS 328 (359)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ccceecCcCccHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 1 133 489999999999999999999999864
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-23 Score=214.87 Aligned_cols=282 Identities=14% Similarity=0.074 Sum_probs=191.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC---CCcEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL---GADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~---~aDiV 203 (460)
|||+|||+|.||+.+|..|+++| ++|++|+|++++++.+.+. |.. + .+.++..+++++++++ ++|+|
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~g~~----~---~~~~i~~~~~~~e~v~~l~~aDvV 72 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKG--FKVAVFNRTYSKSEEFMKANASA----P---FAGNLKAFETMEAFAASLKKPRKA 72 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTTTS----T---TGGGEEECSCHHHHHHHBCSSCEE
T ss_pred CEEEEEChHHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhcCCC----C---CCCCeEEECCHHHHHhcccCCCEE
Confidence 68999999999999999999999 8999999999999988875 321 1 1124667788888766 49999
Q ss_pred EEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-H-hccCCeEEE
Q 012596 204 LHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-L-MNKLPTAMV 280 (460)
Q Consensus 204 ilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e-~-~~g~~~~i~ 280 (460)
|+|||+. .++++++++.+.++++++||+++||...++ ..+.+.+.+. | ..++..|....+ . ..|. .++
T Consensus 73 ilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~-~~l~~~l~~~-g-----~~~v~~pv~gg~~~a~~g~--~i~ 143 (478)
T 1pgj_A 73 LILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQ-GRRAQQLEAA-G-----LRFLGMGISGGEEGARKGP--AFF 143 (478)
T ss_dssp EECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHH-HHHHHHHHTT-T-----CEEEEEEEESHHHHHHHCC--EEE
T ss_pred EEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHH-HHHHHHHHHC-C-----CeEEEeeccCCHHHHhcCC--eEe
Confidence 9999985 799999999999999999999999876543 2333444331 2 122333333222 1 2333 344
Q ss_pred EccCCHHHHHHHHHHHhcCCce-------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHH
Q 012596 281 VASKDRKLANAVQQLLASKHLR-------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL 353 (460)
Q Consensus 281 i~~~d~~~~~~l~~lL~~~g~~-------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~l 353 (460)
++ ++.+..+.++++|+..+.+ +.+.++. |.+...|+.+|....+..+++.|+..+
T Consensus 144 ~g-g~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~i~Ea~~l 205 (478)
T 1pgj_A 144 PG-GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG-----------------GAGSCVKMYHNSGEYAILQIWGEVFDI 205 (478)
T ss_dssp EE-ECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCST-----------------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-CCHHHHHHHHHHHHHhcccccCCCeeEEEeCCc-----------------hHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44 4788899999999987765 3333332 222334455666677888999999999
Q ss_pred HHHcCCCccccccccC----CCceeeecccCCCccchHHHHhh----CC-CChHHHHhhcccceehhhhH-HHHHHHHHH
Q 012596 354 ATKMGAKPATITGLSG----TGDIMLTCFVNLSRNRTVGVRLG----SG-EKLDDILSSMNQVAEGVSTA-GAVIALAQK 423 (460)
Q Consensus 354 a~a~Gi~~~~~~~~~~----~gd~~~t~~s~~srn~~~g~~l~----~g-~~~e~~~~~~~~~~eg~kd~-g~vv~lA~~ 423 (460)
+++.|++++++.++.. .|.. .+...+++ +..+. .| ..++.+.+ ..+.|+. +.++++|++
T Consensus 206 ~~~~G~~~~~~~~l~~~w~~~g~~----~s~l~~~~--~~~l~~~d~~G~~~ld~i~D-----~~~~kgtg~~~~~~A~~ 274 (478)
T 1pgj_A 206 LRAMGLNNDEVAAVLEDWKSKNFL----KSYMLDIS--IAAARAKDKDGSYLTEHVMD-----RIGSKGTGLWSAQEALE 274 (478)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTSTT----CBHHHHHH--HHHHHCBCTTSSBGGGGBCC-----CCCCCSHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHhccCCCc----CchHHHhh--chhhhcCCCCChhHHHHHHH-----HhcCccHHHHHHHHHHH
Confidence 9999999887765421 1110 00001111 11121 23 22222211 0112344 699999999
Q ss_pred cCCCChHHHH-HH-HHHhcCCCHHHHHHHHhcCCC
Q 012596 424 YNVKMPVLTA-VA-RIIDNELTPKKAVLELMSLPQ 456 (460)
Q Consensus 424 ~gv~~P~~~~-v~-~ll~~~~~~~~~~~~l~~~~~ 456 (460)
+|+++|+++. ++ +++....+++.+++.++.-|.
T Consensus 275 ~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~ 309 (478)
T 1pgj_A 275 IGVPAPSLNMAVVSRQFTMYKTERQANASNAPGIT 309 (478)
T ss_dssp HTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTT
T ss_pred hCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCC
Confidence 9999999998 65 788888889999999887765
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=211.27 Aligned_cols=275 Identities=17% Similarity=0.199 Sum_probs=197.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------CCCceEEeCCHHhhcCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------LPENVIATTDAKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~------l~~~i~a~~~~~ea~~~ 199 (460)
++|||+|||+|.||.++|..|+++|.+++|++||+++++++.+++.+ ...+.++.. ...++.+++++.+++++
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~-~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~ 86 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDK-LPIYEPGLDEIVFAARGRNLFFSSDIPKAIAE 86 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS-CSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHHhhcCCEEEECCHHHHhhc
Confidence 35899999999999999999999833389999999999999987643 223323210 02357888898888899
Q ss_pred CcEEEEccchh---------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCC-CCCCEEEEE
Q 012596 200 ADYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN-PRQPFIALS 263 (460)
Q Consensus 200 aDiVilaVp~~---------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~-~~~~~~v~~ 263 (460)
||+||+|||+. .+.+++++|.++++++++||..+ ++.+.+.+.+.+.+.+..+. ....+.+.+
T Consensus 87 aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~gt~~~l~~~l~~~~~~~~~~d~~v~~ 165 (481)
T 2o3j_A 87 ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS-TVPVKAAESIGCILREAQKNNENLKFQVLS 165 (481)
T ss_dssp CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHTC----CCEEEEE
T ss_pred CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC-CCCCCHHHHHHHHHHHhhCcCcCCceEEEe
Confidence 99999999864 27888899999999999999877 58887766777777662231 123466889
Q ss_pred CcccHHHHh----ccCCeEEEEccCCH----HHHHHHHHHHhcCCc-eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccC
Q 012596 264 GPSFALELM----NKLPTAMVVASKDR----KLANAVQQLLASKHL-RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL 334 (460)
Q Consensus 264 gP~~a~e~~----~g~~~~i~i~~~d~----~~~~~l~~lL~~~g~-~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl 334 (460)
+|.+..+.. ...+..+++++.+. +.+++++++|+..+. .++...|+...+|.|++.|.
T Consensus 166 ~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~------------- 232 (481)
T 2o3j_A 166 NPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANA------------- 232 (481)
T ss_dssp CCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHH-------------
T ss_pred CcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHH-------------
Confidence 998765321 12333456776542 577899999998874 66677788889999877664
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhH
Q 012596 335 GNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTA 414 (460)
Q Consensus 335 ~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~ 414 (460)
+.++..++++|+..+|++.|+|++++.+..+....+ . .+.+..|..+ .|.. ..||.
T Consensus 233 ----~~a~~ia~~nE~~~la~~~Gid~~~v~~~~~~~~ri----~--~~~~~pg~g~-gg~c-------------~~KD~ 288 (481)
T 2o3j_A 233 ----FLAQRISSINSISAVCEATGAEISEVAHAVGYDTRI----G--SKFLQASVGF-GGSC-------------FQKDV 288 (481)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTT----C--SSSCCCCSCC-CSSS-------------HHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHccCCCC----C--CCCCCCCCcc-CCcc-------------HHHHH
Confidence 456678899999999999999998887653321100 0 1111111111 1112 23899
Q ss_pred HHHHHHHHHcCCC--ChHHHHHHHHHh
Q 012596 415 GAVIALAQKYNVK--MPVLTAVARIID 439 (460)
Q Consensus 415 g~vv~lA~~~gv~--~P~~~~v~~ll~ 439 (460)
++++.+|+++|++ +|+.+++.++-.
T Consensus 289 ~~l~~~A~~~g~~~~~~l~~~~~~~N~ 315 (481)
T 2o3j_A 289 LSLVYLCESLNLPQVADYWQGVININN 315 (481)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccchHHHHHHHHHH
Confidence 9999999999999 999999887644
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=199.42 Aligned_cols=261 Identities=15% Similarity=0.104 Sum_probs=173.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++|||+|||+|.||..||..|+++| ++|++|||++++++.+.+.|. ..+++++++++++|+||+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~~~~~g~--------------~~~~~~~e~~~~aDvVi~ 71 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQG--KRVAIWNRSPGKAAALVAAGA--------------HLCESVKAALSASPATIF 71 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTC--------------EECSSHHHHHHHSSEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCC--------------eecCCHHHHHhcCCEEEE
Confidence 3689999999999999999999999 999999999999998887652 456788898999999999
Q ss_pred ccchh-cHHHHHH--HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 206 AMPVQ-FSSSFLE--GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 206 aVp~~-~~~~vl~--~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|||.. .+++++. .+.. +.++++||++++ +.+.+.+.+.+.+.+. |. .++.+|..+.....+.....++.
T Consensus 72 ~vp~~~~~~~v~~~~~l~~-~~~g~ivid~st-~~~~~~~~l~~~~~~~-g~-----~~vdapv~g~~~~~~~~~~~i~~ 143 (306)
T 3l6d_A 72 VLLDNHATHEVLGMPGVAR-ALAHRTIVDYTT-NAQDEGLALQGLVNQA-GG-----HYVKGMIVAYPRNVGHRESHSIH 143 (306)
T ss_dssp CCSSHHHHHHHHTSTTHHH-HTTTCEEEECCC-CCTTHHHHHHHHHHHT-TC-----EEEEEEEESCGGGTTCTTCEEEE
T ss_pred EeCCHHHHHHHhcccchhh-ccCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----eEEecccccCcccccCCceEEEE
Confidence 99976 4888886 6654 467899999886 5555555555655543 32 23333333211111111223455
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEc--CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 283 SKDRKLANAVQQLLASKHLRISTS--SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~--~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+++.+.+++++++|+..+-++.+. ++-.+ -+.++| .+......++.|+..++++.|+|
T Consensus 144 gg~~~~~~~~~~ll~~lg~~~~~~~~g~~~g--~g~~~k------------------~~~~~~~~~~~Ea~~la~~~Gld 203 (306)
T 3l6d_A 144 TGDREAFEQHRALLEGLAGHTVFLPWDEALA--FATVLH------------------AHAFAAMVTFFEAVGAGDRFGLP 203 (306)
T ss_dssp EECHHHHHHHHHHHHTTCSEEEECCHHHHHH--HHHHHH------------------HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHhcCCEEEecCCCCcc--HHHHHH------------------HHHHHHHHHHHHHHHHHHHcCCC
Confidence 568899999999999986677765 43111 122222 12233467899999999999999
Q ss_pred ccccccccCCCceeeecccCCCccchHHHHhh-CCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 361 PATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 361 ~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~-~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
++.+.++...+.. ...+....+ .+..+. ..++..- .......||+++++++|++.|+++|+.+.+.+++.
T Consensus 204 ~~~~~~~~~~~~~--~~~s~~~~~--~~~~~~~~~~~~~~-----~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~ 274 (306)
T 3l6d_A 204 VSKTARLLLETSR--FFVADALEE--AVRRLETQDFKGDQ-----ARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQ 274 (306)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHTCCCTTS-----SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh--hcccHHHHH--HHHHHhcCCCCCCc-----ccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 9888764211000 000000011 122221 1111000 01122458999999999999999999999988885
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=210.73 Aligned_cols=279 Identities=14% Similarity=0.138 Sum_probs=184.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiV 203 (460)
+|||+|||+|.||..+|..|+++| ++|++|+|++++++.+.+... + .++..+++++++++. +|+|
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~------~----~gi~~~~s~~e~v~~l~~aDvV 72 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRG--YTVAIYNRTTSKTEEVFKEHQ------D----KNLVFTKTLEEFVGSLEKPRRI 72 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTT------T----SCEEECSSHHHHHHTBCSSCEE
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHhCc------C----CCeEEeCCHHHHHhhccCCCEE
Confidence 479999999999999999999999 899999999999988876521 0 135667788887765 9999
Q ss_pred EEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH--hccCCeEEE
Q 012596 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL--MNKLPTAMV 280 (460)
Q Consensus 204 ilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~--~~g~~~~i~ 280 (460)
|+|||+ ..++++++++.+.++++++||++++|...++ .. +.+.+... ...++..|....+. ..|. . ++
T Consensus 73 ilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~-~~----l~~~l~~~--g~~~v~~pv~gg~~~a~~g~-~-i~ 143 (474)
T 2iz1_A 73 MLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDT-MR----RNAELADS--GINFIGTGVSGGEKGALLGP-S-MM 143 (474)
T ss_dssp EECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HH----HHHHTTTS--SCEEEEEEECSHHHHHHHCC-C-EE
T ss_pred EEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHH-HH----HHHHHHHC--CCeEECCCCCCChhhhccCC-e-EE
Confidence 999998 5789999999999999999999999875543 12 22333221 22344445543332 2333 3 34
Q ss_pred EccCCHHHHHHHHHHHhcCCce--------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHH
Q 012596 281 VASKDRKLANAVQQLLASKHLR--------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW 352 (460)
Q Consensus 281 i~~~d~~~~~~l~~lL~~~g~~--------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~ 352 (460)
.+ ++.+..+.++++|+..+.+ +.+.++.....| +|+.+|....+..+++.|+..
T Consensus 144 ~g-g~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~-----------------~Kl~~N~~~~~~~~~laEa~~ 205 (474)
T 2iz1_A 144 PG-GQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY-----------------VKMVHNGIEYGDMQLIAESYD 205 (474)
T ss_dssp EE-ECHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ec-CCHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHH-----------------HHHHHhHHHHHHHHHHHHHHH
Confidence 44 4788999999999987765 344444322223 344455666778899999999
Q ss_pred HHHH-cCCCcccccccc-----C-CCceeeecccC--CCccchHHHHhhCC-CChHHHHhhcccceehhhhHH-HHHHHH
Q 012596 353 LATK-MGAKPATITGLS-----G-TGDIMLTCFVN--LSRNRTVGVRLGSG-EKLDDILSSMNQVAEGVSTAG-AVIALA 421 (460)
Q Consensus 353 la~a-~Gi~~~~~~~~~-----~-~gd~~~t~~s~--~srn~~~g~~l~~g-~~~e~~~~~~~~~~eg~kd~g-~vv~lA 421 (460)
++++ +|++++++.++. + +++.+.++++. .++|+. .| ..++.+.+ ..+.|+.+ .++++|
T Consensus 206 l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~------~g~~~vd~i~D-----~~~~k~tG~~~~~~A 274 (474)
T 2iz1_A 206 LLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDE------GEGYIVDKILD-----KAGNKGTGKWTSESA 274 (474)
T ss_dssp HHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHTTCBCSS------SSSBGGGGBCS-----CCCCCSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhhHhhcCCCC------CChhHHHHHHH-----hhcccchHHHHHHHH
Confidence 9999 899988776542 2 33333333332 233432 22 22221111 11225556 688999
Q ss_pred HHcCCCChHHHHH--HHHHhcCCCHHHHHHHHhcCC
Q 012596 422 QKYNVKMPVLTAV--ARIIDNELTPKKAVLELMSLP 455 (460)
Q Consensus 422 ~~~gv~~P~~~~v--~~ll~~~~~~~~~~~~l~~~~ 455 (460)
+++|+++|+++.+ .+++....+.......+..-|
T Consensus 275 ~~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~g~ 310 (474)
T 2iz1_A 275 LDLGVPLPLITESVFARYISTYKDERVKASKVLSGP 310 (474)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCC
T ss_pred HHcCCCCchHHHHHHHHHhhhhhhhhHHhhhccCCC
Confidence 9999999999874 444444444444444444434
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=199.00 Aligned_cols=195 Identities=7% Similarity=0.021 Sum_probs=141.0
Q ss_pred hhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC-
Q 012596 122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA- 200 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a- 200 (460)
++|+++|||+|||+|.||..||.+|+++| ++|++|||++++++.+.+.|. ..+++++++++.+
T Consensus 17 ~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G--~~V~v~dr~~~~~~~l~~~g~--------------~~~~s~~e~~~~a~ 80 (358)
T 4e21_A 17 NLYFQSMQIGMIGLGRMGADMVRRLRKGG--HECVVYDLNVNAVQALEREGI--------------AGARSIEEFCAKLV 80 (358)
T ss_dssp -----CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTTC--------------BCCSSHHHHHHHSC
T ss_pred hhhhcCCEEEEECchHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHCCC--------------EEeCCHHHHHhcCC
Confidence 47778899999999999999999999999 999999999999998887653 3456788888888
Q ss_pred --cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeE
Q 012596 201 --DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA 278 (460)
Q Consensus 201 --DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~ 278 (460)
|+||+|||...++++++++.+.++++++||+++++. +.+...+.+.+.+. |..+.++.+..||..+. .|. .
T Consensus 81 ~~DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~-g~~~vdapVsGg~~~a~---~G~--~ 153 (358)
T 4e21_A 81 KPRVVWLMVPAAVVDSMLQRMTPLLAANDIVIDGGNSH-YQDDIRRADQMRAQ-GITYVDVGTSGGIFGLE---RGY--C 153 (358)
T ss_dssp SSCEEEECSCGGGHHHHHHHHGGGCCTTCEEEECSSCC-HHHHHHHHHHHHTT-TCEEEEEEEECGGGHHH---HCC--E
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-hHHHHHHHHHHHHC-CCEEEeCCCCCCHHHHh---cCC--e
Confidence 999999998899999999999999999999998754 33333444444432 32223444444544333 343 3
Q ss_pred EEEccCCHHHHHHHHHHHhcCC--------------------ceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcH
Q 012596 279 MVVASKDRKLANAVQQLLASKH--------------------LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNS 338 (460)
Q Consensus 279 i~i~~~d~~~~~~l~~lL~~~g--------------------~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~ 338 (460)
++.+++.+.+++++++|+..+ ..+.+.++.-..+..| +.+|.
T Consensus 154 -im~GG~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~K-----------------l~~n~ 215 (358)
T 4e21_A 154 -LMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVK-----------------MVHNG 215 (358)
T ss_dssp -EEEESCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHH-----------------HHHHH
T ss_pred -eeecCCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHH-----------------HHHHH
Confidence 445567899999999999876 3455555543333333 33455
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 012596 339 MAALVAQGCSEIRWLATKM 357 (460)
Q Consensus 339 ~~al~~~~~~E~~~la~a~ 357 (460)
+......+++|++.++++.
T Consensus 216 l~~~~i~~~aE~~~la~~a 234 (358)
T 4e21_A 216 IEYGLMAAYAEGLNILHHA 234 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5666778999999999998
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=202.32 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=190.2
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--CC----CceEEeCCHHhhc
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--LP----ENVIATTDAKTAL 197 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~--l~----~~i~a~~~~~ea~ 197 (460)
|+++|||+|||+|.||.++|..|+++|.+++|++|||++++++.+++.+ ...+.++.. +. .++.+++++.+++
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~-~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~ 80 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPT-LPIYEPGLKEVVESCRGKNLFFSTNIDDAI 80 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS-CSSCCTTHHHHHHHHBTTTEEEESCHHHHH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCC-CCcCCCCHHHHHHHhhcCCEEEECCHHHHH
Confidence 4457899999999999999999999932289999999999999886643 233333321 11 3577888988888
Q ss_pred CCCcEEEEccchhc---------------HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEE
Q 012596 198 LGADYCLHAMPVQF---------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL 262 (460)
Q Consensus 198 ~~aDiVilaVp~~~---------------~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~ 262 (460)
++||+||+|||... +.+++++|.+.++++++||++++ +.+.+.+.+.+.+.+. +.....+.+.
T Consensus 81 ~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~ST-v~~g~~~~l~~~l~~~-~~~~~d~~V~ 158 (467)
T 2q3e_A 81 KEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKST-VPVRAAESIRRIFDAN-TKPNLNLQVL 158 (467)
T ss_dssp HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSC-CCTTHHHHHHHHHHHT-CCTTCEEEEE
T ss_pred hcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCc-CCchHHHHHHHHHHHh-CCCCCCeEEE
Confidence 99999999998643 46778889998999999988875 6666655666666654 2222456778
Q ss_pred ECcccHHHHh----ccCCeEEEEcc----CCHHHHHHHHHHHhcC-CceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc
Q 012596 263 SGPSFALELM----NKLPTAMVVAS----KDRKLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN 333 (460)
Q Consensus 263 ~gP~~a~e~~----~g~~~~i~i~~----~d~~~~~~l~~lL~~~-g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k 333 (460)
.+|.+..+.. ...+..+++++ .+.+..++++++|+.. +..+....++...+|.|++.|
T Consensus 159 ~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N------------- 225 (467)
T 2q3e_A 159 SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAAN------------- 225 (467)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHH-------------
T ss_pred eCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHH-------------
Confidence 8998765321 12333456666 3678899999999987 655566667777777776665
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhh
Q 012596 334 LGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVST 413 (460)
Q Consensus 334 l~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd 413 (460)
.+.++..++++|+..+|++.|++++++.+..+....+ . ...+.+|..+ .|.. ..||
T Consensus 226 ----~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~----~--~~~~~pg~g~-gg~c-------------~~kD 281 (467)
T 2q3e_A 226 ----AFLAQRISSINSISALCEATGADVEEVATAIGMDQRI----G--NKFLKASVGF-GGSC-------------FQKD 281 (467)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTSTTT----C--SSSCCCCSCC-CSSS-------------HHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCCCC----C--ccccCCCCCC-CCcc-------------HHHH
Confidence 3466778899999999999999998887653221100 0 0011111101 1122 2389
Q ss_pred HHHHHHHHHHcCCC--ChHHHHHHHH
Q 012596 414 AGAVIALAQKYNVK--MPVLTAVARI 437 (460)
Q Consensus 414 ~g~vv~lA~~~gv~--~P~~~~v~~l 437 (460)
.++++..|+++|++ .++.+++.++
T Consensus 282 ~~~l~~~a~~~g~~~~~~~~~~~~~~ 307 (467)
T 2q3e_A 282 VLNLVYLCEALNLPEVARYWQQVIDM 307 (467)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999999997 5666665544
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-22 Score=208.40 Aligned_cols=269 Identities=12% Similarity=0.058 Sum_probs=181.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDiVi 204 (460)
|||+|||+|.||+.+|..|+++| ++|++|+|++++++.+.+... ++ .++..++++++++ +++|+||
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~-----~g----~gi~~~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEA-----KG----TKVLGAHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTT-----TT----SSCEECSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHhccc-----cC----CCeEEeCCHHHHHhhccCCCEEE
Confidence 68999999999999999999999 899999999999998876210 01 1345677888876 4899999
Q ss_pred Eccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 205 laVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
+|||+. .++++++++.+.++++++||++++|...++ ..+.+.+.+. | +.++.+|....+...+.+..++.+
T Consensus 72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~-~~l~~~l~~~-g-----~~~v~~pv~g~~~~a~~g~~i~~g- 143 (482)
T 2pgd_A 72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDT-MRRCRDLKDK-G-----ILFVGSGVSGGEDGARYGPSLMPG- 143 (482)
T ss_dssp ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHH-HHHHHHHHHT-T-----CEEEEEEEESHHHHHHHCCEEEEE-
T ss_pred EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHH-HHHHHHHHHc-C-----CeEeCCCCCCChhhhccCCeEEeC-
Confidence 999985 799999999999999999999999876543 2334444432 2 234455554443322222344444
Q ss_pred CCHHHHHHHHHHHhcCCceE-------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH
Q 012596 284 KDRKLANAVQQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK 356 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v-------~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a 356 (460)
++.+..+.++++|+..+.++ .+.++. |.+..+|+.+|....+..+++.|+..++++
T Consensus 144 g~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~-----------------g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~ 206 (482)
T 2pgd_A 144 GNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDD-----------------GAGHFVKMVHNGIEYGDMQLICEAYHLMKD 206 (482)
T ss_dssp ECTTTHHHHHHHHHHHSCBCTTSCBSCCCCEET-----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhccCCCcceEEECCC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999999887765 222221 333445556677778889999999999999
Q ss_pred c-CCCccccccccC---CCceeeecccCCCccchHHHHhhCC-----CChHHHHhhcccceehhhhHHHHHHHHHHcCCC
Q 012596 357 M-GAKPATITGLSG---TGDIMLTCFVNLSRNRTVGVRLGSG-----EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427 (460)
Q Consensus 357 ~-Gi~~~~~~~~~~---~gd~~~t~~s~~srn~~~g~~l~~g-----~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~ 427 (460)
. |++++++.++.. .++ +.+...+++ ...+..+ ..++.+. ......++.+.++++|+++|++
T Consensus 207 ~~G~~~~~~~~~~~~w~~g~----~~S~l~~~~--~~~l~~~d~~~~~~ld~i~----d~~~~k~t~~~~~~~A~~~Gv~ 276 (482)
T 2pgd_A 207 VLGLGHKEMAKAFEEWNKTE----LDSFLIEIT--ASILKFQDADGKHLLPKIR----DSAGQKGTGKWTAISALEYGVP 276 (482)
T ss_dssp TSCCCHHHHHHHHHHHTTTT----TCBHHHHHH--HHHHHCBCTTSSBSGGGSC----CCCCCCSHHHHHHHHHHHHTCC
T ss_pred cCCcCHHHHHHHHHHhcCCC----cCchHHHHH--hHHhhccCCCCCeeecccc----cccccccHHHHHHHHHHHcCCC
Confidence 9 999887766421 121 111111111 1112211 2222221 1111235567899999999999
Q ss_pred ChHHH-HHHHHHhcCC
Q 012596 428 MPVLT-AVARIIDNEL 442 (460)
Q Consensus 428 ~P~~~-~v~~ll~~~~ 442 (460)
+|+++ .+|+.+....
T Consensus 277 ~P~i~~av~~~~~s~~ 292 (482)
T 2pgd_A 277 VTLIGEAVFARCLSSL 292 (482)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhhhhh
Confidence 99995 7888875443
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=199.99 Aligned_cols=262 Identities=13% Similarity=0.107 Sum_probs=178.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~ 198 (460)
...|..|||+|.||.+||..|+++| ++|++||+++++++.+++. ..+.|.++.. .+.++.+++++ +
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G--~~V~~~D~~~~kv~~L~~g-~~pi~epgl~~ll~~~~~~g~l~~ttd~----~ 82 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHG--VDVLGVDINQQTIDKLQNG-QISIEEPGLQEVYEEVLSSGKLKVSTTP----E 82 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTT-CCSSCCTTHHHHHHHHHHTTCEEEESSC----C
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHCC-CCCcCCCCHHHHHHhhcccCceEEeCch----h
Confidence 3579999999999999999999999 9999999999999999874 3455655542 14567887763 5
Q ss_pred CCcEEEEccchhc------------HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC-CCCEEEEECc
Q 012596 199 GADYCLHAMPVQF------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQPFIALSGP 265 (460)
Q Consensus 199 ~aDiVilaVp~~~------------~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~-~~~~~v~~gP 265 (460)
+||+||+|||+.. +..+.++|.+.++++++||..+ ++.+.+.+.+.+.+.+..|.. ...+.++++|
T Consensus 83 ~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S-TV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~P 161 (431)
T 3ojo_A 83 ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES-TIAPKTMDDFVKPVIENLGFTIGEDIYLVHCP 161 (431)
T ss_dssp CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS-CCCTTHHHHTHHHHHHTTTCCBTTTEEEEECC
T ss_pred hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec-CCChhHHHHHHHHHHHHcCCCcCCCeEEEECC
Confidence 7999999999754 6777789999999999988877 699988777777665543421 2457899999
Q ss_pred ccHHHHh----ccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 012596 266 SFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA 341 (460)
Q Consensus 266 ~~a~e~~----~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~a 341 (460)
.+..+.. ...+..+ ++|.+.+.+++++++|+..+-......++...+..| +.+|.+.+
T Consensus 162 e~~~~G~A~~~~~~p~~I-v~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~K-----------------l~~N~~~a 223 (431)
T 3ojo_A 162 ERVLPGKILEELVHNNRI-IGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSK-----------------LMENTYRD 223 (431)
T ss_dssp CCCCTTSHHHHHHHSCEE-EEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHH-----------------HHHHHHHH
T ss_pred CcCCCcchhhcccCCCEE-EEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHH-----------------HHHHHHHH
Confidence 8754321 1234455 555688999999999998765444445665555444 45566778
Q ss_pred HHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHH
Q 012596 342 LVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALA 421 (460)
Q Consensus 342 l~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA 421 (460)
+..++++|+..+|+++|+|++.+.+..+...-+ ..+.+|.-+ .|.++ .||..+++..|
T Consensus 224 ~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~ri--------~~l~pG~G~-GG~C~-------------pkD~~~L~~~a 281 (431)
T 3ojo_A 224 VNIALANELTKICNNLNINVLDVIEMANKHPRV--------NIHQPGPGV-GGHCL-------------AVDPYFIIAKD 281 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTC--------CCCCCCSCC-CCCCB-------------CSCC-------
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHccCCCc--------ccCCCCCCc-cccch-------------hhhHHHHHHHH
Confidence 889999999999999999998887653321111 011111111 22332 25667777888
Q ss_pred HHcCCCChHHHHHHHHH
Q 012596 422 QKYNVKMPVLTAVARII 438 (460)
Q Consensus 422 ~~~gv~~P~~~~v~~ll 438 (460)
+++| ++.+++.++-
T Consensus 282 ~~~~---~li~~~~~iN 295 (431)
T 3ojo_A 282 PENA---KLIQTGREIN 295 (431)
T ss_dssp --CC---HHHHHHHHHH
T ss_pred HHHh---HHHHHHHHHH
Confidence 8777 7777777653
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=202.68 Aligned_cols=265 Identities=12% Similarity=0.077 Sum_probs=179.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC---CCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~---~aDi 202 (460)
.+|||+|||+|.||..||.+|+++| ++|++|||++++++.+.+.+.. + .++..+.+++++++ ++|+
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~-----g----~~i~~~~s~~e~v~~l~~aDv 71 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEAK-----G----TKVVGAQSLKEMVSKLKKPRR 71 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTTT-----T----SSCEECSSHHHHHHTBCSSCE
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhcccC-----C----CceeccCCHHHHHhhccCCCE
Confidence 4689999999999999999999999 9999999999999998876431 0 12445678888765 5999
Q ss_pred EEEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHh--ccCCeEE
Q 012596 203 CLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELM--NKLPTAM 279 (460)
Q Consensus 203 VilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~--~g~~~~i 279 (460)
||++||.. .++++++++.+.++++++||+++++...++ ..+.+.+.+. |. .++.+|..+.+.. .|. .+
T Consensus 72 Vil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t-~~~~~~l~~~-Gi-----~fvd~pVsGg~~gA~~G~--~i 142 (484)
T 4gwg_A 72 IILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDT-TRRCRDLKAK-GI-----LFVGSGVSGGEEGARYGP--SL 142 (484)
T ss_dssp EEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HHHHHHHHHT-TC-----EEEEEEEESHHHHHHHCC--EE
T ss_pred EEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHH-HHHHHHHHhh-cc-----ccccCCccCCHHHHhcCC--ee
Confidence 99999985 789999999999999999999998665443 3333444432 32 2334444333221 233 44
Q ss_pred EEccCCHHHHHHHHHHHhcCCceE-------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHH
Q 012596 280 VVASKDRKLANAVQQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW 352 (460)
Q Consensus 280 ~i~~~d~~~~~~l~~lL~~~g~~v-------~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~ 352 (460)
+++ ++.+.+++++++|+..+.++ .+.++. |.+..+|+.+|.+.....++++|+..
T Consensus 143 m~G-G~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~-----------------Gag~~vKmv~N~i~~~~m~~iaEa~~ 204 (484)
T 4gwg_A 143 MPG-GNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDE-----------------GAGHFVKMVHNGIEYGDMQLICEAYH 204 (484)
T ss_dssp EEE-ECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEET-----------------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecC-CCHHHHHHHHHHHHHhcCcccCCCceEEEECCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 57888999999999766554 333321 45566677788888889999999999
Q ss_pred HHHH-cCCCcccccccc---CCCceeeecccCCCccchHHHHhh----CC-CChHHHHhhcccceehhhhHHHHHHHHHH
Q 012596 353 LATK-MGAKPATITGLS---GTGDIMLTCFVNLSRNRTVGVRLG----SG-EKLDDILSSMNQVAEGVSTAGAVIALAQK 423 (460)
Q Consensus 353 la~a-~Gi~~~~~~~~~---~~gd~~~t~~s~~srn~~~g~~l~----~g-~~~e~~~~~~~~~~eg~kd~g~vv~lA~~ 423 (460)
++++ +|++++++.++. ..|. +.|...+++ ...+. .| ..++.+....++.-+|. -.+..|.+
T Consensus 205 l~~~~~Gld~~~l~~v~~~w~~G~----~~S~l~e~~--~~~l~~~D~~g~~~ld~i~d~~~~kgtG~----wt~~~A~~ 274 (484)
T 4gwg_A 205 LMKDVLGMAQDEMAQAFEDWNKTE----LDSFLIEIT--ANILKFQDTDGKHLLPKIRDSAGQKGTGK----WTAISALE 274 (484)
T ss_dssp HHHHTSCCCHHHHHHHHHHHTTTT----TCBHHHHHH--HHHHHCBCTTSSBSGGGSCCCCCSSCTTH----HHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHcCCC----ccchHHHHH--HHHHhcCCccCCccHHHHhccccCcchHH----HHHHHHHH
Confidence 9999 999998876642 1111 011111111 12222 12 23555554445555553 33556779
Q ss_pred cCCCCh-HHHHHHHHH
Q 012596 424 YNVKMP-VLTAVARII 438 (460)
Q Consensus 424 ~gv~~P-~~~~v~~ll 438 (460)
+|+|+| +.++++..+
T Consensus 275 ~gvp~p~i~~av~~R~ 290 (484)
T 4gwg_A 275 YGVPVTLIGEAVFARC 290 (484)
T ss_dssp HTCCCHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHH
Confidence 999999 445666554
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=203.86 Aligned_cols=260 Identities=10% Similarity=0.048 Sum_probs=175.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhhcCC---CcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTALLG---ADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDi 202 (460)
..+|+|||+|.||++||.+|+++| ++|++|+|++++++.+.+ ... + .++..+++++++++. +|+
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~------~----~gi~~~~s~~e~v~~l~~aDv 77 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHG--FTVCAYNRTQSKVDHFLANEAK------G----KSIIGATSIEDFISKLKRPRK 77 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSHHHHHHHHTTTT------T----SSEECCSSHHHHHHTSCSSCE
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHccccc------C----CCeEEeCCHHHHHhcCCCCCE
Confidence 468999999999999999999999 999999999999998876 210 0 135566788887766 999
Q ss_pred EEEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 203 CLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 203 VilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
||+|||+ ..++++++++.+.++++++||+++++....+ ..+.+.+.+. |. .++.+|....+...+.++.++.
T Consensus 78 Vil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~-~~l~~~l~~~-g~-----~~v~~pVsgg~~~a~~G~~im~ 150 (497)
T 2p4q_A 78 VMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDS-NRRYEELKKK-GI-----LFVGSGVSGGEEGARYGPSLMP 150 (497)
T ss_dssp EEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HHHHHHHHHT-TC-----EEEEEEEESHHHHHHHCCEEEE
T ss_pred EEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHH-HHHHHHHHHc-CC-----ceeCCCcccChhHhhcCCeEEe
Confidence 9999998 5899999999999999999999998765443 3344445432 32 2333343332221111223444
Q ss_pred ccCCHHHHHHHHHHHhcCCce------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH
Q 012596 282 ASKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT 355 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~ 355 (460)
+++.+.+++++++|+..+.+ +.+.++. |.+..+|+.+|.+.....++++|+..+++
T Consensus 151 -gg~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~-----------------G~g~~~Kl~~N~~~~~~~~~laEa~~l~~ 212 (497)
T 2p4q_A 151 -GGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPA-----------------GAGHYVKMVHNGIEYGDMQLICEAYDIMK 212 (497)
T ss_dssp -EECGGGHHHHHHHHHHHSCEETTEESCCCCEET-----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhcCccCCCCceEEECCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999988776 3333321 33444556677777888999999999999
Q ss_pred H-cCCCccccccccC---CCceeeecccCCCccchHHHHhhCC-----CChHHHHhhcccceehhhhHH-HHHHHHHHcC
Q 012596 356 K-MGAKPATITGLSG---TGDIMLTCFVNLSRNRTVGVRLGSG-----EKLDDILSSMNQVAEGVSTAG-AVIALAQKYN 425 (460)
Q Consensus 356 a-~Gi~~~~~~~~~~---~gd~~~t~~s~~srn~~~g~~l~~g-----~~~e~~~~~~~~~~eg~kd~g-~vv~lA~~~g 425 (460)
+ +|++++++.++.. .|+. .+...+++ +..+.++ ..++.+. -..+.|+.+ .+++.|+++|
T Consensus 213 ~~lGl~~~~~~~~~~~w~~g~~----~S~l~~~~--~~~l~~~d~~~~~~vd~i~-----D~~~~KgtG~~~~~~A~~~G 281 (497)
T 2p4q_A 213 RLGGFTDKEISDVFAKWNNGVL----DSFLVEIT--RDILKFDDVDGKPLVEKIM-----DTAGQKGTGKWTAINALDLG 281 (497)
T ss_dssp HTTCCCHHHHHHHHHHHHTTTT----CBHHHHHH--HHHHTCBCTTSSBGGGGSC-----CCCCCCSHHHHHHHHHHHHT
T ss_pred HccCCCHHHHHHHHHHhcCCcc----ccHHHHHH--HHHHhcCCCCCccHHHHHH-----HhhccchHHHHHHHHHHHcC
Confidence 9 6999988776421 1110 01111111 1223222 1222111 112336666 6889999999
Q ss_pred CCChHHHHH
Q 012596 426 VKMPVLTAV 434 (460)
Q Consensus 426 v~~P~~~~v 434 (460)
+++|+.+..
T Consensus 282 v~~P~~~~a 290 (497)
T 2p4q_A 282 MPVTLIGEA 290 (497)
T ss_dssp CCCHHHHHH
T ss_pred CCCchHHHH
Confidence 999999873
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=199.37 Aligned_cols=269 Identities=20% Similarity=0.183 Sum_probs=180.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--C---CCceEEeCCHHhhcCCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L---PENVIATTDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~--l---~~~i~a~~~~~ea~~~a 200 (460)
.+|||+|||+|.||.++|..|++ | ++|++||+++++++.+++. ....+.++.. + ..++.+++|+++++++|
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G--~~V~~~D~~~~~v~~l~~g-~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~a 110 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-N--HEVVALDIVQAKVDMLNQK-ISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNA 110 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-T--SEEEEECSCHHHHHHHHTT-CCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTC
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-C--CeEEEEecCHHHhhHHhcc-CCccccccHHHHHhhccCCeEEEcCHHHHHhCC
Confidence 46899999999999999999998 8 9999999999999998873 3333322211 0 23578899998999999
Q ss_pred cEEEEccchh-----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 201 DYCLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 201 DiVilaVp~~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
|+||+|||+. .+++++++|.+ ++++++||..+ ++.+.+.+.+.+.+.+. .+.+.|.+..
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S-Tv~pgtt~~l~~~l~~~--------~v~~sPe~~~ 180 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS-TIPVGFTRDIKERLGID--------NVIFSPEFLR 180 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS-CCCTTHHHHHHHHHTCC--------CEEECCCCCC
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC-CCChHHHHHHHHHHhhc--------cEeecCccCC
Confidence 9999999975 47888889988 89999999877 48887765555544321 2455777755
Q ss_pred HHh--c--cCCeEEEEccCCHHHHHHHHHHHhc--C--CceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 012596 270 ELM--N--KLPTAMVVASKDRKLANAVQQLLAS--K--HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA 341 (460)
Q Consensus 270 e~~--~--g~~~~i~i~~~d~~~~~~l~~lL~~--~--g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~a 341 (460)
+.. . -.+..+++|+ +.+.++++.++|.. . +..+.. .++...++.| +.+|.+.+
T Consensus 181 ~G~A~~~~l~p~rIvvG~-~~~~~~~~~~ll~~~~~~~~~~v~~-~~~~~AE~~K-----------------l~~N~~~a 241 (432)
T 3pid_A 181 EGRALYDNLHPSRIVIGE-RSARAERFADLLKEGAIKQDIPTLF-TDSTEAEAIK-----------------LFANTYLA 241 (432)
T ss_dssp TTSHHHHHHSCSCEEESS-CSHHHHHHHHHHHHHCSSSSCCEEE-CCHHHHHHHH-----------------HHHHHHHH
T ss_pred cchhhhcccCCceEEecC-CHHHHHHHHHHHHhhhccCCCeEEe-cCccHHHHHH-----------------HHHHHHHH
Confidence 421 1 1233455554 56678899999985 2 234444 3555555544 44566777
Q ss_pred HHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHH
Q 012596 342 LVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALA 421 (460)
Q Consensus 342 l~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA 421 (460)
+..++++|+..+|+++|+|++++.+..+....+-..+ + .+|.-+ .|.++. ||..+++.
T Consensus 242 ~~Ia~~nEl~~lae~~GiD~~~v~~~~~~dprig~~~-----~-~pg~G~-GG~C~p-------------kD~~~L~~-- 299 (432)
T 3pid_A 242 LRVAYFNELDSYAESQGLNSKQIIEGVCLDPRIGNHY-----N-NPSFGY-GGYCLP-------------KDTKQLLA-- 299 (432)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCSSS-----C-CCCSCC-CTTTHH-------------HHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHccCCCCCccc-----C-CCCCCC-cccchh-------------hhHHHHHH--
Confidence 8899999999999999999988876532211000000 0 011111 234442 56666653
Q ss_pred HHcCCCChHHHHHHHHHhcCCCHHHHHHHH
Q 012596 422 QKYNVKMPVLTAVARIIDNELTPKKAVLEL 451 (460)
Q Consensus 422 ~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l 451 (460)
+..|++.++.+++.++- +..++-.++.+
T Consensus 300 ~~~~~~~~li~~~~~~N--~~~~~~v~~~i 327 (432)
T 3pid_A 300 NYESVPNNIIAAIVDAN--RTRKDFIADSI 327 (432)
T ss_dssp HTTTSCCSHHHHHHHHH--HHHHHHHHHHH
T ss_pred HhcCCchhHHHHHHHHH--HhhHHHHHHHH
Confidence 34688999998888763 33344444443
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=186.92 Aligned_cols=243 Identities=11% Similarity=0.132 Sum_probs=160.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r--~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|+||.+||..|+++| ++|++|+| +++.++.+.+.|. . ++++++++++|+||+
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g--~~V~~~~~~~~~~~~~~~~~~g~--------------~--~~~~~~~~~aDvvi~ 62 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRG--VEVVTSLEGRSPSTIERARTVGV--------------T--ETSEEDVYSCPVVIS 62 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--CEEEECCTTCCHHHHHHHHHHTC--------------E--ECCHHHHHTSSEEEE
T ss_pred CeEEEEechHHHHHHHHHHHHCC--CeEEEeCCccCHHHHHHHHHCCC--------------c--CCHHHHHhcCCEEEE
Confidence 68999999999999999999999 89999999 7777887776552 2 366777889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC-CCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~-~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
|||.+.....+.++.+.+++ ++|+++ ++.+.+.+. +.+.++.. +....+..+|. ....|.. +++++.
T Consensus 63 ~v~~~~~~~~~~~~~~~~~~--~vi~~s-~~~~~~~~~----l~~~~~~~g~~~~~v~~~~~---~~~~g~~--~~~~g~ 130 (264)
T 1i36_A 63 AVTPGVALGAARRAGRHVRG--IYVDIN-NISPETVRM----ASSLIEKGGFVDAAIMGSVR---RKGADIR--IIASGR 130 (264)
T ss_dssp CSCGGGHHHHHHHHHTTCCS--EEEECS-CCCHHHHHH----HHHHCSSSEEEEEEECSCHH---HHGGGCE--EEEEST
T ss_pred ECCCHHHHHHHHHHHHhcCc--EEEEcc-CCCHHHHHH----HHHHHhhCCeeeeeeeCCcc---ccccCCe--EEecCC
Confidence 99987654555778777765 778775 565543323 33433321 11222333332 2223432 445554
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCC-hHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 285 DRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~~~D-i~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
+. +++++ |+..|.++...++ +....|.|+..|. .......++.|+..++++.|++++
T Consensus 131 ~~---~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~-----------------~~~~~~~~~~Ea~~la~~~G~~~~- 188 (264)
T 1i36_A 131 DA---EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSS-----------------YTKGVSALLWETLTAAHRLGLEED- 188 (264)
T ss_dssp TH---HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred cH---HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHcCCcHH-
Confidence 43 78888 9999988766554 5555666655543 344567899999999999999976
Q ss_pred cccc-cC-CC-ceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhc
Q 012596 364 ITGL-SG-TG-DIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 364 ~~~~-~~-~g-d~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
..+. .. .+ +....+.+. ...+...|++ ..||++.++++++++ +++|+++.++++++.
T Consensus 189 ~~~~~~~~~g~~~~~~~~~~------~~~~~~~g~~-------------~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~ 248 (264)
T 1i36_A 189 VLEMLEYTEGNDFRESAISR------LKSSCIHARR-------------RYEEMKEVQDMLAEV-IDPVMPTCIIRIFDK 248 (264)
T ss_dssp HHHHHHTTSCSSTHHHHHHH------HHHHHHTHHH-------------HHHHHHHHHHHHHTT-SCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHH------hcCCCCcchh-------------hHHHHHHHHHHHHHh-cCchHHHHHHHHHHH
Confidence 4432 11 11 111000000 0111211111 348999999999999 999999999999875
Q ss_pred CC
Q 012596 441 EL 442 (460)
Q Consensus 441 ~~ 442 (460)
..
T Consensus 249 ~~ 250 (264)
T 1i36_A 249 LK 250 (264)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-20 Score=189.14 Aligned_cols=260 Identities=17% Similarity=0.153 Sum_probs=178.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-----CCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-----l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|+||.++|..|++ | ++|++|||++++++.+++.+.... .++.. .+.++.+++++.++++++|+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G--~~V~~~d~~~~~~~~l~~~~~~i~-e~~l~~~~~~~~~~l~~t~~~~~~~~~aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-Q--NEVTIVDILPSKVDKINNGLSPIQ-DEYIEYYLKSKQLSIKATLDSKAAYKEAEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-T--SEEEEECSCHHHHHHHHTTCCSSC-CHHHHHHHHHSCCCEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHhC-C--CEEEEEECCHHHHHHHHcCCCCcC-CCCHHHHHHhccCcEEEeCCHHHHhcCCCE
Confidence 689999999999999999999 8 999999999999999987654211 00000 02246778888888889999
Q ss_pred EEEccchh-----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012596 203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL 271 (460)
Q Consensus 203 VilaVp~~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~ 271 (460)
||+|||+. .+.++++++.+ ++++++||..+. +.+.+.+ .+.+.++.. .+.++|.+..+.
T Consensus 77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST-~~~g~~~----~l~~~~~~~----~v~~~Pe~~~~G 146 (402)
T 1dlj_A 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKST-IPIGFIT----EMRQKFQTD----RIIFSPEFLRES 146 (402)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSC-CCTTHHH----HHHHHTTCS----CEEECCCCCCTT
T ss_pred EEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCC-CCccHHH----HHHHHhCCC----eEEECCccccCc
Confidence 99999986 48899999988 888999887442 4444333 333444431 456778765432
Q ss_pred h----ccCCeEEEEccCCH------HHHHHHHHHHhcCCce---EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcH
Q 012596 272 M----NKLPTAMVVASKDR------KLANAVQQLLASKHLR---ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNS 338 (460)
Q Consensus 272 ~----~g~~~~i~i~~~d~------~~~~~l~~lL~~~g~~---v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~ 338 (460)
. ...+..+++|+.+. +.++.+.++|...++. +....|+...+|.|++.|.+
T Consensus 147 ~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~---------------- 210 (402)
T 1dlj_A 147 KALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTY---------------- 210 (402)
T ss_dssp STTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHH----------------
T ss_pred chhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHH----------------
Confidence 1 12233456666541 6678899999764443 46667899999999888753
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHH
Q 012596 339 MAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVI 418 (460)
Q Consensus 339 ~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv 418 (460)
.++..++++|+..+|++.|+|++++.+..+....+ . .+.+.+|..+ .|.. ..||.++++
T Consensus 211 -~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~ri----~--~~~~~pg~g~-gg~c-------------~~kD~~~l~ 269 (402)
T 1dlj_A 211 -LALRVAYFNELDTYAESRKLNSHMIIQGISYDDRI----G--MHYNNPSFGY-GGYS-------------LPKDTKQLL 269 (402)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTT----C--SSSCCCCSSC-CSSH-------------HHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCCCC----C--cCCCCCCCcc-CCcc-------------HHhhHHHHH
Confidence 45567889999999999999998887653322111 0 0000111101 1111 238899999
Q ss_pred HHHHHcCCCChHHHHHHHHHhc
Q 012596 419 ALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 419 ~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
..|+ |+++|+.+++.++-..
T Consensus 270 ~~a~--~~~~~l~~~~~~~N~~ 289 (402)
T 1dlj_A 270 ANYN--NIPQTLIEAIVSSNNV 289 (402)
T ss_dssp HHHT--TSSCSHHHHHHHHHHH
T ss_pred HHhc--CCChHHHHHHHHHHHH
Confidence 8885 9999999999887543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=180.54 Aligned_cols=279 Identities=17% Similarity=0.185 Sum_probs=197.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~ 198 (460)
+|.+|+|||+|.||..+|..|++.| ++|+.+|.++++++.+++ |..+.+.++.. -..++.++++.+++++
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G--~~V~g~Did~~kV~~ln~-G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~ 96 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLG--HRVVGYDVNPSIVERLRA-GRPHIYEPGLEEALGRALSSGRLSFAESAEEAVA 96 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHHHHHHHT-TCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHC-CCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHh
Confidence 4679999999999999999999999 999999999999999987 44444555432 1356889999999999
Q ss_pred CCcEEEEccchh----------cHHHHHHHhhhcCC---CCCeEEEeccCCccchhhhHH-HHHHHHhCCCCCCEEEEEC
Q 012596 199 GADYCLHAMPVQ----------FSSSFLEGISDYVD---PGLPFISLSKGLELNTLRMMS-QIIPQALRNPRQPFIALSG 264 (460)
Q Consensus 199 ~aDiVilaVp~~----------~~~~vl~~i~~~l~---~~~iIV~~~~Gi~~~~~~~l~-e~l~~~lg~~~~~~~v~~g 264 (460)
.+|++|+|||+. .+..+.+.|.++++ ++++||.-++ +.+.+.+.+. ..+.+..+. ..+.+.+.
T Consensus 97 ~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eST-VppGtte~~~~~~l~~~~~~--~~f~v~~~ 173 (444)
T 3vtf_A 97 ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKST-VPPGTTEGLVARAVAEEAGG--VKFSVASN 173 (444)
T ss_dssp TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSC-CCTTTTTTHHHHHHHTTTTT--CCCEEEEC
T ss_pred cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCC-CCCchHHHHHHHHHHHhCCC--CCceeecC
Confidence 999999999852 46777788887775 4567776664 8887766543 445444333 45778899
Q ss_pred cccHHHHh----ccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHH
Q 012596 265 PSFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMA 340 (460)
Q Consensus 265 P~~a~e~~----~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~ 340 (460)
|.+..+.. ...+..+++|+.++...+.+.++++.....+..+ ++...|..|++ .|.+.
T Consensus 174 PErl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~-~~~~AE~~Kl~-----------------eN~~r 235 (444)
T 3vtf_A 174 PEFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVM-KPREAELVKYA-----------------SNVFL 235 (444)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEE-CHHHHHHHHHH-----------------HHHHH
T ss_pred cccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEe-chhHHHHHHHH-----------------HHHHH
Confidence 98765421 1234556778888888899999998766555543 55666666544 45667
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHH
Q 012596 341 ALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIA 419 (460)
Q Consensus 341 al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~ 419 (460)
++..+.++|+..+|+++|+|...+.+.++....+ ..+ +.+|.-+ .|.++. ||..+++.
T Consensus 236 avnIa~~NEla~ice~~GiDv~eV~~a~~~d~ri-------g~~~l~PG~G~-GG~Cip-------------kD~~~L~~ 294 (444)
T 3vtf_A 236 ALKISFANEVGLLAKRLGVDTYRVFEAVGLDKRI-------GRHYFGAGLGF-GGSCFP-------------KDTLAFIR 294 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTS-------CSTTCCCSSCC-CTTTHH-------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCC-------CCCCCCCCCCC-CCcccC-------------cCHHHHHH
Confidence 7888999999999999999987776543221000 111 1112111 244442 78899999
Q ss_pred HHHHcCCCChHHHHHHHHHhcCCCHHHHHHHH
Q 012596 420 LAQKYNVKMPVLTAVARIIDNELTPKKAVLEL 451 (460)
Q Consensus 420 lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l 451 (460)
.|+++|++.++.+++.++-.. .+.-+++.+
T Consensus 295 ~a~~~g~~~~li~a~~~iN~~--~~~~vv~~l 324 (444)
T 3vtf_A 295 FGESLGLEMAISKAVLRVNEY--MPRYAVQLL 324 (444)
T ss_dssp HHHHTTCCCHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHhcCCCHHHHHhhHHHHHH--HHHHHHHHH
Confidence 999999999999988876543 344444443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=170.13 Aligned_cols=214 Identities=14% Similarity=0.161 Sum_probs=155.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.||.++|..|.+.| ++|++|+|++++++.+.+.|.. ...+++++++ +++|+||+||
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~-~~~D~vi~av 65 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVERQLV------------DEAGQDLSLL-QTAKIIFLCT 65 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTSC------------SEEESCGGGG-TTCSEEEECS
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHhCCCC------------ccccCCHHHh-CCCCEEEEEC
Confidence 68999999999999999999999 8999999999988888765431 1245678787 8999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEE-----ECcccHH-HHhccCCeEEEE
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-----SGPSFAL-ELMNKLPTAMVV 281 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~-----~gP~~a~-e~~~g~~~~i~i 281 (460)
|.+.+.++++++.+.++++++|+++++ +.....+ .+.+.++ ...+.... .||.++. ++..+..+.+..
T Consensus 66 ~~~~~~~~~~~l~~~~~~~~~vv~~~~-~~~~~~~----~~~~~~~-~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~ 139 (279)
T 2f1k_A 66 PIQLILPTLEKLIPHLSPTAIVTDVAS-VKTAIAE----PASQLWS-GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTP 139 (279)
T ss_dssp CHHHHHHHHHHHGGGSCTTCEEEECCS-CCHHHHH----HHHHHST-TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEE
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEECCC-CcHHHHH----HHHHHhC-CEeecCcccCCccCCHHHHhHHHhCCCcEEEec
Confidence 999999999999999998999999843 4332222 2222222 11222222 2454443 233444444333
Q ss_pred c-cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHH-HHHHHHHHhcccCCC-----cHHHHHHHHHHHHHHHHH
Q 012596 282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNV-LAIAAGIVVGMNLGN-----NSMAALVAQGCSEIRWLA 354 (460)
Q Consensus 282 ~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv-~ai~~g~~~~~kl~~-----n~~~al~~~~~~E~~~la 354 (460)
. +.+.+..+.++++|+..|++++..++..+.+|.++++|. ..++.++.++..... +....++..++.|+.+++
T Consensus 140 ~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~ 219 (279)
T 2f1k_A 140 TEYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVG 219 (279)
T ss_dssp CTTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGG
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcccchhccc
Confidence 3 347888999999999999999999998999999999996 566667766554433 456678888999987776
Q ss_pred HHcCCCccccc
Q 012596 355 TKMGAKPATIT 365 (460)
Q Consensus 355 ~a~Gi~~~~~~ 365 (460)
+.+|..+.
T Consensus 220 ---~~~p~~~~ 227 (279)
T 2f1k_A 220 ---GGNPELGT 227 (279)
T ss_dssp ---GSCHHHHH
T ss_pred ---CCCHHHHH
Confidence 35555444
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=169.85 Aligned_cols=262 Identities=12% Similarity=0.121 Sum_probs=164.8
Q ss_pred hccCCCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 123 ILERTNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~--~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
.|+.+|||+|||+|+||++||..|+++|. .++|++|+|+++ +++.+.+.| +.+++++.++++
T Consensus 18 ~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G--------------~~~~~~~~e~~~ 83 (322)
T 2izz_A 18 LYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG--------------VKLTPHNKETVQ 83 (322)
T ss_dssp ----CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT--------------CEEESCHHHHHH
T ss_pred hccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC--------------CEEeCChHHHhc
Confidence 56667899999999999999999999872 258999999986 788887655 345667888888
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeE
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA 278 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~ 278 (460)
++|+||+|||.+++.++++++.+.++++++||++++|+..+ .+.+.+.+.++. ...+...|..+..+..+. .
T Consensus 84 ~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~---~l~~~l~~~~~~---~~vv~~~p~~p~~~~~g~--~ 155 (322)
T 2izz_A 84 HSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTIS---SIEKKLSAFRPA---PRVIRCMTNTPVVVREGA--T 155 (322)
T ss_dssp HCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHH---HHHHHHHTTSSC---CEEEEEECCGGGGGTCEE--E
T ss_pred cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHH---HHHHHHhhcCCC---CeEEEEeCCcHHHHcCCe--E
Confidence 99999999999999999999999998899999999998754 344555443332 123445566655544442 3
Q ss_pred EEEccC--CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH
Q 012596 279 MVVASK--DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK 356 (460)
Q Consensus 279 i~i~~~--d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a 356 (460)
++.++. +.+..+.++++|+..|..++..+|+..... ++ .|. .+.+...+..++.|+ +.+
T Consensus 156 v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~--------a~-~g~-------gpa~~~~~~eala~a---~~~ 216 (322)
T 2izz_A 156 VYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVT--------GL-SGS-------GPAYAFTALDALADG---GVK 216 (322)
T ss_dssp EEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHH--------HH-TTT-------HHHHHHHHHHHHHHH---HHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHH--------HH-hcC-------HHHHHHHHHHHHHHH---HHH
Confidence 333332 378889999999999988887776543211 11 111 122223334444443 678
Q ss_pred cCCCccccccccCCCceeeecccCCCccchHHHHh-hCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHH
Q 012596 357 MGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVA 435 (460)
Q Consensus 357 ~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~ 435 (460)
.|++++.+.++.. +.. .. ....+ ..|+....+.... ...-......++..++.|++.++.+.+.
T Consensus 217 ~Gl~~~~a~~l~~--~~~---~g-------~~~~~~~~~~~p~~l~~~v---~sp~g~t~~~l~~l~~~g~~~~~~~av~ 281 (322)
T 2izz_A 217 MGLPRRLAVRLGA--QAL---LG-------AAKMLLHSEQHPGQLKDNV---SSPGGATIHALHVLESGGFRSLLINAVE 281 (322)
T ss_dssp TTCCHHHHHHHHH--HHH---HH-------HHHHHHHCSSCHHHHHHHH---CCTTSHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCCCHHHHHHHHH--HHH---HH-------HHHHHHhcCCCHHHHHHhC---CCCCcHHHHHHHHHHHCCHHHHHHHHHH
Confidence 8999876655310 000 00 00111 1122111111000 0000123456677888999999998888
Q ss_pred HHHhc
Q 012596 436 RIIDN 440 (460)
Q Consensus 436 ~ll~~ 440 (460)
+.+..
T Consensus 282 ~~~~r 286 (322)
T 2izz_A 282 ASCIR 286 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=165.04 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=118.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH--------------HHHHHhhcCCCccCCCCCCCCceEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV--------------CQSINEKHCNCRYFPEQKLPENVIATTD 192 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~--------------~~~l~~~g~~~~~~~~~~l~~~i~a~~~ 192 (460)
.|||+|||+|+||.+||..|+++| ++|++|+|++++ .+.+.+.. ... .+++
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~ 83 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLG--HEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH------------PHV-HLAA 83 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHTCC-------CCHHHHGGGS------------TTC-EEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc------------Cce-eccC
Confidence 689999999999999999999999 999999999886 33333221 011 2356
Q ss_pred HHhhcCCCcEEEEccchhcHHHHHHHh-hhcCCCCCeEEEeccCC----------ccchhhhHHHHHHHHhCCCCC--CE
Q 012596 193 AKTALLGADYCLHAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGL----------ELNTLRMMSQIIPQALRNPRQ--PF 259 (460)
Q Consensus 193 ~~ea~~~aDiVilaVp~~~~~~vl~~i-~~~l~~~~iIV~~~~Gi----------~~~~~~~l~e~l~~~lg~~~~--~~ 259 (460)
+.+++++||+||+|||.+...+++.++ .+.+ ++++||+++||+ .+++...+.+.+++.++...+ .+
T Consensus 84 ~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~ 162 (245)
T 3dtt_A 84 FADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTL 162 (245)
T ss_dssp HHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECS
T ss_pred HHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEee
Confidence 788889999999999999988888888 7776 789999999765 344455677888887753100 00
Q ss_pred EEEECcccHHHHh-ccCCeEEEEccCCHHHHHHHHHHHhcCCce-EEEcCChH
Q 012596 260 IALSGPSFALELM-NKLPTAMVVASKDRKLANAVQQLLASKHLR-ISTSSDVT 310 (460)
Q Consensus 260 ~v~~gP~~a~e~~-~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~-v~~~~Di~ 310 (460)
.++.+|....... .+.+..+++++.+.+.++.++++|+..|+. +.+.+++.
T Consensus 163 ~~~~a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g 215 (245)
T 3dtt_A 163 NTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDIT 215 (245)
T ss_dssp TTSCHHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGG
T ss_pred cccCHHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHH
Confidence 0112222221111 122234566777899999999999999975 56666653
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=157.11 Aligned_cols=170 Identities=15% Similarity=0.204 Sum_probs=130.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+|||+|||+|+||+++|..|+++| ++|++|+|+++ +++++|+||+
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g--~~V~~~~~~~~--------------------------------~~~~aD~vi~ 63 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAG--HEVTYYGSKDQ--------------------------------ATTLGEIVIM 63 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT--CEEEEECTTCC--------------------------------CSSCCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH--------------------------------HhccCCEEEE
Confidence 4689999999999999999999999 89999998752 3568999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCc-cc-------hhhhHHHHHHHHhCCCCCCEEEEE------CcccHHHH
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE-LN-------TLRMMSQIIPQALRNPRQPFIALS------GPSFALEL 271 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~-~~-------~~~~l~e~l~~~lg~~~~~~~v~~------gP~~a~e~ 271 (460)
|+|...++++++++.+.++ ++++|++++|+. ++ +...+.+.+++.++. ..++. +|.++.+.
T Consensus 64 av~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~----~~vv~~~~~~~~p~~~~~~ 138 (209)
T 2raf_A 64 AVPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPD----SQVLKAFNTTFAATLQSGQ 138 (209)
T ss_dssp CSCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTT----SEEEECSTTSCHHHHHHSE
T ss_pred cCCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCC----CcEEEeeecccHhhccccc
Confidence 9999889999999988887 899999999998 33 333456777776653 12333 66666543
Q ss_pred hcc-CCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 012596 272 MNK-LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN 337 (460)
Q Consensus 272 ~~g-~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n 337 (460)
..+ ....+.+++.+.+..+.++++|+..|++++..+|+. .+.++||+.++.++++.+..++.|
T Consensus 139 ~~g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~~~i~---~a~~~K~i~~l~~~~~~~~g~g~~ 202 (209)
T 2raf_A 139 VNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLK---RARELEAMGFMQMTLAASEQIGWT 202 (209)
T ss_dssp ETTTEECEEEEEESCHHHHHHHHHHTTTSSCEEEEEESGG---GHHHHHHHHHHHHHHHHTTSSCTT
T ss_pred cCCCCCceeEEcCCCHHHHHHHHHHHHHcCCceEeCCCHh---HHHHhcchHHHHHHHHHHcCCCch
Confidence 333 233455667777899999999999999999888864 455567877777788777766654
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-17 Score=155.64 Aligned_cols=250 Identities=14% Similarity=0.195 Sum_probs=157.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|||+|+||.++|..|+++|. ++|++|+|++++++.+.+. | +..++++.+++ ++|+||+|
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~~~~g--------------~~~~~~~~~~~-~~D~vi~~ 64 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGG-YRIYIANRGAEKRERLEKELG--------------VETSATLPELH-SDDVLILA 64 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-CEEEEECSSHHHHHHHHHHTC--------------CEEESSCCCCC-TTSEEEEC
T ss_pred CEEEEECchHHHHHHHHHHHHCCC-CeEEEECCCHHHHHHHHHhcC--------------CEEeCCHHHHh-cCCEEEEE
Confidence 689999999999999999998873 6899999999998888764 3 24455677777 99999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC--
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK-- 284 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~-- 284 (460)
||...++++++++.+ + +++||++++|+.++ .+.+.++.. ..+ +...|+.+.....|. ..++.+.
T Consensus 65 v~~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~-------~l~~~~~~~-~~~-v~~~~~~~~~~~~g~--~~i~~~~~~ 130 (263)
T 1yqg_A 65 VKPQDMEAACKNIRT--N-GALVLSVAAGLSVG-------TLSRYLGGT-RRI-VRVMPNTPGKIGLGV--SGMYAEAEV 130 (263)
T ss_dssp SCHHHHHHHHTTCCC--T-TCEEEECCTTCCHH-------HHHHHTTSC-CCE-EEEECCGGGGGTCEE--EEEECCTTS
T ss_pred eCchhHHHHHHHhcc--C-CCEEEEecCCCCHH-------HHHHHcCCC-CcE-EEEcCCHHHHHcCce--EEEEcCCCC
Confidence 998889999888766 5 88999999998863 344444431 112 222466555443442 2233444
Q ss_pred CHHHHHHHHHHHhcCCceEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 285 DRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~~-~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
+.+..+.++++|+..|..++.. +|. +..+.++. |.. +.....+..++.|+ +++.|+++++
T Consensus 131 ~~~~~~~~~~l~~~~g~~~~~~~~~~--------~~~~~al~-g~~-------~~~~~~~~~~l~e~---~~~~G~~~~~ 191 (263)
T 1yqg_A 131 SETDRRIADRIMKSVGLTVWLDDEEK--------MHGITGIS-GSG-------PAYVFYLLDALQNA---AIRQGFDMAE 191 (263)
T ss_dssp CHHHHHHHHHHHHTTEEEEECSSTTH--------HHHHHHHT-TSH-------HHHHHHHHHHHHHH---HHHTTCCHHH
T ss_pred CHHHHHHHHHHHHhCCCEEEeCChhh--------ccHHHHHH-ccH-------HHHHHHHHHHHHHH---HHHcCCCHHH
Confidence 7888999999999999888555 441 12222221 111 12233444555555 8889999877
Q ss_pred cccccCCCceeeecccCCCccchHHHHhh-CCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcC
Q 012596 364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNE 441 (460)
Q Consensus 364 ~~~~~~~gd~~~t~~s~~srn~~~g~~l~-~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~ 441 (460)
+.++..- .. .. ....+. .|...+.+.+.. ...+ ..+...++..++.|++.|+.+.+++.+...
T Consensus 192 ~~~~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~l~~~~~~~~~~~a~~~~~~~~ 255 (263)
T 1yqg_A 192 ARALSLA--TF---KG-------AVALAEQTGEDFEKLQKNV--TSKG-GTTHEAVEAFRRHRVAEAISEGVCACVRRS 255 (263)
T ss_dssp HHHHHHH--HH---HH-------HHHHHHHHCCCHHHHHHHT--CCTT-SHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HH---HH-------HHHHHHhcCCCHHHHHHhc--CCCC-hhHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 6553200 00 00 000111 121111111110 1111 233455566688999999999999988643
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-16 Score=149.79 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=116.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC----eEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL----KVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~----~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+|||+|||+|+||.+++..|.++| + +|++|+|++++++.+.+. | +..++++.++++++|
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g--~~~~~~V~~~~r~~~~~~~~~~~~g--------------~~~~~~~~e~~~~aD 65 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKN--IVSSNQIICSDLNTANLKNASEKYG--------------LTTTTDNNEVAKNAD 65 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--SSCGGGEEEECSCHHHHHHHHHHHC--------------CEECSCHHHHHHHCS
T ss_pred CCeEEEECccHHHHHHHHHHHhCC--CCCCCeEEEEeCCHHHHHHHHHHhC--------------CEEeCChHHHHHhCC
Confidence 479999999999999999999999 7 999999999999888753 3 345678888889999
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
+||+|||.+.+.++++++.+.++++++||++++|+..+ .+++.++.. ...+...|..+.....|. +.+..
T Consensus 66 vVilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~-------~l~~~~~~~--~~~v~~~p~~p~~~~~g~-~~~~~ 135 (247)
T 3gt0_A 66 ILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIE-------STENAFNKK--VKVVRVMPNTPALVGEGM-SALCP 135 (247)
T ss_dssp EEEECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHH-------HHHHHHCSC--CEEEEEECCGGGGGTCEE-EEEEE
T ss_pred EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHH-------HHHHHhCCC--CcEEEEeCChHHHHcCce-EEEEe
Confidence 99999999999999999999999999999999998864 344444431 122344566555443332 22222
Q ss_pred c-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 282 A-SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 282 ~-~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
+ +.+.+.++.++++|+..|..+...++
T Consensus 136 ~~~~~~~~~~~~~~l~~~~G~~~~~~e~ 163 (247)
T 3gt0_A 136 NEMVTEKDLEDVLNIFNSFGQTEIVSEK 163 (247)
T ss_dssp CTTCCHHHHHHHHHHHGGGEEEEECCGG
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEeCHH
Confidence 2 35788999999999999986555444
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=151.37 Aligned_cols=168 Identities=14% Similarity=0.239 Sum_probs=125.8
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v-~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+|+||||+|||+|+||.++|..|+++| ++|++ |+|++++++++.+. |. ..+.+..++++++|
T Consensus 20 ~m~mmkI~IIG~G~mG~~la~~l~~~g--~~V~~v~~r~~~~~~~l~~~~g~--------------~~~~~~~~~~~~aD 83 (220)
T 4huj_A 20 FQSMTTYAIIGAGAIGSALAERFTAAQ--IPAIIANSRGPASLSSVTDRFGA--------------SVKAVELKDALQAD 83 (220)
T ss_dssp GGGSCCEEEEECHHHHHHHHHHHHHTT--CCEEEECTTCGGGGHHHHHHHTT--------------TEEECCHHHHTTSS
T ss_pred hhcCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCCHHHHHHHHHHhCC--------------CcccChHHHHhcCC
Confidence 345789999999999999999999999 89998 99999988887654 32 12223345578999
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc-----cc--hhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhc-
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE-----LN--TLRMMSQIIPQALRNPRQPFIALSGPSFALELMN- 273 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~-----~~--~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~- 273 (460)
+||+|||.+.+.+++.++.+ + ++++||++++|+. ++ +.....+.+++.++.. ..+...|.....+..
T Consensus 84 vVilavp~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~---~vv~~~~~~~~~v~~~ 158 (220)
T 4huj_A 84 VVILAVPYDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGA---KVVKAFNTLPAAVLAA 158 (220)
T ss_dssp EEEEESCGGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTC---EEEEESCSSCHHHHTS
T ss_pred EEEEeCChHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCC---CEEECCCCCCHHHhhh
Confidence 99999999999999999877 5 5889999999985 11 1223556777776532 223444544443332
Q ss_pred -----cCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 274 -----KLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 274 -----g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
+.+..+++++.+.+..+.++++|+..|++++..+++...
T Consensus 159 g~~~~~~~~~v~~~g~~~~~~~~v~~l~~~~G~~~~~~G~l~~a 202 (220)
T 4huj_A 159 DPDKGTGSRVLFLSGNHSDANRQVAELISSLGFAPVDLGTLAAS 202 (220)
T ss_dssp CSBCSSCEEEEEEEESCHHHHHHHHHHHHHTTCEEEECCSHHHH
T ss_pred CcccCCCCeeEEEeCCCHHHHHHHHHHHHHhCCCeEeeCChhhc
Confidence 123456677888999999999999999999999987544
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-16 Score=153.38 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=119.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~---~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
++|||+|||+|+||.+++..|.++| + +|++|+|++++++.+.+.. ++..+++..++++++|+
T Consensus 2 ~~~~I~iIG~G~mG~aia~~l~~~g--~~~~~V~v~dr~~~~~~~l~~~~-------------gi~~~~~~~~~~~~aDv 66 (280)
T 3tri_A 2 NTSNITFIGGGNMARNIVVGLIANG--YDPNRICVTNRSLDKLDFFKEKC-------------GVHTTQDNRQGALNADV 66 (280)
T ss_dssp CCSCEEEESCSHHHHHHHHHHHHTT--CCGGGEEEECSSSHHHHHHHHTT-------------CCEEESCHHHHHSSCSE
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCC--CCCCeEEEEeCCHHHHHHHHHHc-------------CCEEeCChHHHHhcCCe
Confidence 4589999999999999999999999 7 8999999999998887741 24566788888999999
Q ss_pred EEEccchhcHHHHHHHhhhc-CCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 203 CLHAMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~-l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
||+|||.+.+.++++++.++ ++++++||++++|+..+ .+.+.++.. .. .+...|+.+..+..|. ..+.
T Consensus 67 Vilav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~-------~l~~~l~~~-~~-vvr~mPn~p~~v~~g~--~~l~ 135 (280)
T 3tri_A 67 VVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTP-------LIEKWLGKA-SR-IVRAMPNTPSSVRAGA--TGLF 135 (280)
T ss_dssp EEECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHH-------HHHHHHTCC-SS-EEEEECCGGGGGTCEE--EEEE
T ss_pred EEEEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHH-------HHHHHcCCC-Ce-EEEEecCChHHhcCcc--EEEE
Confidence 99999999999999999988 88888999999999764 344445431 12 3455677666554432 2223
Q ss_pred cc--CCHHHHHHHHHHHhcCCceEEE
Q 012596 282 AS--KDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 282 ~~--~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
.+ .+.+..+.++++|+..|..++.
T Consensus 136 ~~~~~~~~~~~~v~~l~~~iG~~~~v 161 (280)
T 3tri_A 136 ANETVDKDQKNLAESIMRAVGLVIWV 161 (280)
T ss_dssp CCTTSCHHHHHHHHHHHGGGEEEEEC
T ss_pred eCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 22 3578899999999999975554
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=148.35 Aligned_cols=195 Identities=13% Similarity=0.062 Sum_probs=133.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~-V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+|||+|||+|.||..++..|++.| ++ |.+|+|++++++.+.+.. ++..+++++++++++|+||+
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g--~~~v~~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~Dvvi~ 74 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKG--FRIVQVYSRTEESARELAQKV-------------EAEYTTDLAEVNPYAKLYIV 74 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSHHHHHHHHHHT-------------TCEEESCGGGSCSCCSEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHc-------------CCceeCCHHHHhcCCCEEEE
Confidence 479999999999999999999998 88 899999999888887651 13456688888889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-HhccCCeEEEEccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-LMNKLPTAMVVASK 284 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e-~~~g~~~~i~i~~~ 284 (460)
|+|...+.++++++.+.+++++++|++++|+..+. +.+.++.. .......|..... ...+.. .+++.+.
T Consensus 75 av~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~-------l~~~~~~~--~~~~~~~~~~g~~~~~~~~~-~~~v~~~ 144 (266)
T 3d1l_A 75 SLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNV-------WEGHVPHY--GVFYPMQTFSKQREVDFKEI-PFFIEAS 144 (266)
T ss_dssp CCCHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG-------STTTCSSE--EEEEECCCC---CCCCCTTC-CEEEEES
T ss_pred ecCHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH-------HHHHHHhc--cCcCCceecCCCchhhcCCC-eEEEecC
Confidence 99999889999999888888999999999887642 22222210 1111122211100 011222 2345566
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChH---HHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 285 DRKLANAVQQLLASKHLRISTSSDVT---GVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~~~Di~---g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
+.+..+.++++|+..|.+++..++.. ...|.++..|.. .....+.|. ++++.|+++
T Consensus 145 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~ea--l~~~~Gl~~ 203 (266)
T 3d1l_A 145 STEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFT-------------------NHMYALAAE--LLKKYNLPF 203 (266)
T ss_dssp SHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHH--HHHHTTCCG
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHH--HHHHcCCCH
Confidence 88899999999999998888777542 123333322221 112334453 668999998
Q ss_pred cccccc
Q 012596 362 ATITGL 367 (460)
Q Consensus 362 ~~~~~~ 367 (460)
+.+.++
T Consensus 204 ~~~~~l 209 (266)
T 3d1l_A 204 DVMLPL 209 (266)
T ss_dssp GGGHHH
T ss_pred HHHHHH
Confidence 776543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-16 Score=150.89 Aligned_cols=173 Identities=13% Similarity=0.131 Sum_probs=123.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~--~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiV 203 (460)
||||+|||+|.||.++|..|+++| + +|++|+|++++++.+.+.|.. ...+++++++++ ++|+|
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g--~~~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~aDvV 66 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSG--FKGKIYGYDINPESISKAVDLGII------------DEGTTSIAKVEDFSPDFV 66 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTT--CCSEEEEECSCHHHHHHHHHTTSC------------SEEESCGGGGGGTCCSEE
T ss_pred CcEEEEEecCHHHHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHCCCc------------ccccCCHHHHhcCCCCEE
Confidence 479999999999999999999998 6 899999999888887765531 123457777888 99999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEE-----CcccHH-HHhccCCe
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS-----GPSFAL-ELMNKLPT 277 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~-----gP~~a~-e~~~g~~~ 277 (460)
|+|||.+.+.++++++.+.++++++|++++++. ....+.+.+.+.+. ..+..... ||.++. ++..+.++
T Consensus 67 ilavp~~~~~~v~~~l~~~l~~~~iv~~~~~~~-~~~~~~l~~~l~~~----~v~~~p~~~~~~~gp~~a~~~l~~g~~~ 141 (281)
T 2g5c_A 67 MLSSPVRTFREIAKKLSYILSEDATVTDQGSVK-GKLVYDLENILGKR----FVGGHPIAGTEKSGVEYSLDNLYEGKKV 141 (281)
T ss_dssp EECSCHHHHHHHHHHHHHHSCTTCEEEECCSCC-THHHHHHHHHHGGG----EECEEEECCCSCCSGGGCCSSTTTTCEE
T ss_pred EEcCCHHHHHHHHHHHHhhCCCCcEEEECCCCc-HHHHHHHHHhcccc----ceeeccccCCccCChhhhhhHHhCCCCE
Confidence 999999999999999998898899888877533 32223334444321 12222222 444432 22234333
Q ss_pred EEEEc---cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHH
Q 012596 278 AMVVA---SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN 320 (460)
Q Consensus 278 ~i~i~---~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkN 320 (460)
.+. +.+.+..+.++++|+..|.+++..++..+..|.++..|
T Consensus 142 --~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~ 185 (281)
T 2g5c_A 142 --ILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSH 185 (281)
T ss_dssp --EECCCSSSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTH
T ss_pred --EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHH
Confidence 344 56788899999999999999888887666666655444
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=146.24 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=110.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
++|||+|||+|+||++||..|+++|. .++|++|+|++++ .| +..++++.++++++|+|
T Consensus 3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g--------------~~~~~~~~~~~~~~D~v 62 (262)
T 2rcy_A 3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TT--------------LNYMSSNEELARHCDII 62 (262)
T ss_dssp SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SS--------------SEECSCHHHHHHHCSEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------Cc--------------eEEeCCHHHHHhcCCEE
Confidence 45899999999999999999999872 1489999998753 12 34566788888899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
|+|||.+.++++++++.+.+ ++++||+.++|+.++ .+.+.++.. .-.+...|.++.....| .+.+..+.
T Consensus 63 i~~v~~~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~-------~l~~~~~~~--~~~v~~~p~~p~~~~~g-~~~~~~~~ 131 (262)
T 2rcy_A 63 VCAVKPDIAGSVLNNIKPYL-SSKLLISICGGLNIG-------KLEEMVGSE--NKIVWVMPNTPCLVGEG-SFIYCSNK 131 (262)
T ss_dssp EECSCTTTHHHHHHHSGGGC-TTCEEEECCSSCCHH-------HHHHHHCTT--SEEEEEECCGGGGGTCE-EEEEEECT
T ss_pred EEEeCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHH-------HHHHHhCCC--CcEEEECCChHHHHcCC-eEEEEeCC
Confidence 99999999999999999888 678899999999874 233444431 01234557766554444 33222221
Q ss_pred -CCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 284 -KDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 284 -~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
.+.+.++.++++|+..|..+...++
T Consensus 132 ~~~~~~~~~~~~ll~~~G~~~~~~~~ 157 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGIIHEIKEK 157 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEEEEECCGG
T ss_pred CCCHHHHHHHHHHHHhCCCEEEeCHH
Confidence 2688899999999999874444444
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=149.68 Aligned_cols=154 Identities=13% Similarity=0.152 Sum_probs=113.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||||+|||+ |.||..+|..|+++| ++|++|+|++++++.+.+.|.. .+ +..++++++|+||+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~g~~--------------~~-~~~~~~~~aDvVi~ 73 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSA--HHLAAIEIAPEGRDRLQGMGIP--------------LT-DGDGWIDEADVVVL 73 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSS--SEEEEECCSHHHHHHHHHTTCC--------------CC-CSSGGGGTCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHhcCCC--------------cC-CHHHHhcCCCEEEE
Confidence 479999999 999999999999999 8999999999988888764421 11 45567789999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEE-ECcccHHH--------HhccCC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALE--------LMNKLP 276 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~-~gP~~a~e--------~~~g~~ 276 (460)
|||.+.+.++++++.+.++++++||++++|...+. +.+..+. ..++ ..|.++.+ ...|.+
T Consensus 74 av~~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~-------l~~~~~~----~~~v~~~P~~~~~~~~~~~~~~~~g~l 142 (286)
T 3c24_A 74 ALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAG-------VMPERAD----ITYFIGHPCHPPLFNDETDPAARTDYH 142 (286)
T ss_dssp CSCHHHHHHHHHHHGGGSCTTCEEEESCSHHHHHT-------CSCCCTT----SEEEEEEECCSCSSCCCCSHHHHTCSS
T ss_pred cCCchHHHHHHHHHHHhCCCCCEEEECCCCchhHH-------HHhhhCC----CeEEecCCCCccccccccchhhccCcc
Confidence 99999999999999999999999999988763321 1121111 2233 55555332 445532
Q ss_pred ------eEE-EEccCCHHHHHHHHHHHhcCCc---eEEEcCC
Q 012596 277 ------TAM-VVASKDRKLANAVQQLLASKHL---RISTSSD 308 (460)
Q Consensus 277 ------~~i-~i~~~d~~~~~~l~~lL~~~g~---~v~~~~D 308 (460)
..+ ...+.+.+..+.++++|+..|. +++..+.
T Consensus 143 ~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~ 184 (286)
T 3c24_A 143 GGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTT 184 (286)
T ss_dssp SSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCH
T ss_pred cccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeCh
Confidence 222 2234677889999999999998 6776654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=147.49 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=116.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++|||+|||+|+||.++|..|+++|.+++|++|+|++++++.+.+.|.. ...+++++++++++|+||+
T Consensus 5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~aDvVil 72 (290)
T 3b1f_A 5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIV------------DEATADFKVFAALADVIIL 72 (290)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSC------------SEEESCTTTTGGGCSEEEE
T ss_pred ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCc------------ccccCCHHHhhcCCCEEEE
Confidence 4689999999999999999999985338999999999988888765531 0345577777889999999
Q ss_pred ccchhcHHHHHHHhhhc-CCCCCeEEEeccCCccchhhhHHHHHHHHhCC-C--CCCEEEEE-----CcccHH-HHhccC
Q 012596 206 AMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRN-P--RQPFIALS-----GPSFAL-ELMNKL 275 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~-l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~-~--~~~~~v~~-----gP~~a~-e~~~g~ 275 (460)
|||.+...++++++.+. ++++++|++++++... .. +.+.+.++. . ..+..... ||..+. ++..|.
T Consensus 73 avp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~-~~----~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~ 147 (290)
T 3b1f_A 73 AVPIKKTIDFIKILADLDLKEDVIITDAGSTKYE-IV----RAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENA 147 (290)
T ss_dssp CSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHH-HH----HHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTS
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchH-HH----HHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCC
Confidence 99999999999999988 8889998887653221 11 333444332 1 01111111 343322 222343
Q ss_pred CeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChH
Q 012596 276 PTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVT 310 (460)
Q Consensus 276 ~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~ 310 (460)
...+... +.+.+..+.++++|+..|.+++..++..
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~ 183 (290)
T 3b1f_A 148 YYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDAAE 183 (290)
T ss_dssp EEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHH
Confidence 3333332 3567888999999999999987766533
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-14 Score=141.08 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=117.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~--~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiV 203 (460)
+|||+|||+|.||.+||..|.++| + +|++|||+++.++.+.+.|.. ...++++++ ++++||+|
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G--~~~~V~~~dr~~~~~~~a~~~G~~------------~~~~~~~~~~~~~~aDvV 98 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSG--FKGKIYGYDINPESISKAVDLGII------------DEGTTSIAKVEDFSPDFV 98 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTT--CCSEEEEECSCHHHHHHHHHTTSC------------SEEESCTTGGGGGCCSEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHCCCc------------chhcCCHHHHhhccCCEE
Confidence 489999999999999999999999 7 999999999988888776531 134567778 88999999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECc-----ccHH-HHhccCCe
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP-----SFAL-ELMNKLPT 277 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP-----~~a~-e~~~g~~~ 277 (460)
|+|||...+.++++++.+.++++++|++++. +.....+.+.+.+ +....+...+.|+ ..+. ++..|..
T Consensus 99 ilavp~~~~~~vl~~l~~~l~~~~iv~d~~S-vk~~~~~~~~~~l----~~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~- 172 (314)
T 3ggo_A 99 MLSSPVRTFREIAKKLSYILSEDATVTDQGS-VKGKLVYDLENIL----GKRFVGGHPIAGTEKSGVEYSLDNLYEGKK- 172 (314)
T ss_dssp EECSCGGGHHHHHHHHHHHSCTTCEEEECCS-CCTHHHHHHHHHH----GGGEECEEECCCCCCCSGGGCCTTTTTTCE-
T ss_pred EEeCCHHHHHHHHHHHhhccCCCcEEEECCC-CcHHHHHHHHHhc----CCCEEecCcccCCcccchhhhhhhhhcCCE-
Confidence 9999999999999999999999999998764 3222122233333 2111222334443 2222 1223433
Q ss_pred EEEEc---cCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 278 AMVVA---SKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 278 ~i~i~---~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
+++. +.+.+.++.++++|+..|.+++..+.-...
T Consensus 173 -~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD 209 (314)
T 3ggo_A 173 -VILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHD 209 (314)
T ss_dssp -EEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred -EEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHH
Confidence 2343 357889999999999999888776554433
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-14 Score=137.25 Aligned_cols=202 Identities=14% Similarity=0.130 Sum_probs=135.5
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------------cCCCccCCCCCCCCceEEe
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------------HCNCRYFPEQKLPENVIAT 190 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-------------g~~~~~~~~~~l~~~i~a~ 190 (460)
||.++||+|||+|.||+.+|..|+++| ++|++||++++.++++.+. +..... ......++..+
T Consensus 1 Mm~~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~--~~~~~~~i~~~ 76 (283)
T 4e12_A 1 MTGITNVTVLGTGVLGSQIAFQTAFHG--FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGA--AQKALGGIRYS 76 (283)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTH--HHHHHHHCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHH--HHHHHcCeEEe
Confidence 456789999999999999999999999 9999999999887766543 110000 00011235677
Q ss_pred CCHHhhcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEE-EEECccc
Q 012596 191 TDAKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI-ALSGPSF 267 (460)
Q Consensus 191 ~~~~ea~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~-v~~gP~~ 267 (460)
+++++++++||+||+|+|.+ ....++.++.+.+++++++++.+.++... . +.+.++.....+. ....|..
T Consensus 77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~---~----la~~~~~~~~~ig~h~~~p~~ 149 (283)
T 4e12_A 77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPS---D----LVGYTGRGDKFLALHFANHVW 149 (283)
T ss_dssp SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---H----HHHHHSCGGGEEEEEECSSTT
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---H----HHhhcCCCcceEEEccCCCcc
Confidence 89988889999999999986 67788899999999999999888777543 2 2222222100011 1122321
Q ss_pred HHHHhccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Q 012596 268 ALELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQ 345 (460)
Q Consensus 268 a~e~~~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~-~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~ 345 (460)
.+....++.+ ..+.+.++.++++++..|...... .|..|. ....+...
T Consensus 150 -----~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~-------------------------i~nr~~~~ 199 (283)
T 4e12_A 150 -----VNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY-------------------------VLNSLLVP 199 (283)
T ss_dssp -----TSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT-------------------------THHHHHHH
T ss_pred -----cCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE-------------------------EehHHHHH
Confidence 1222222222 136889999999999999877765 453221 01122335
Q ss_pred HHHHHHHHHHHcCCCcccccc
Q 012596 346 GCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 346 ~~~E~~~la~a~Gi~~~~~~~ 366 (460)
.++|+..++++.+++++++.+
T Consensus 200 ~~~ea~~l~~~g~~~~~~id~ 220 (283)
T 4e12_A 200 LLDAAAELLVDGIADPETIDK 220 (283)
T ss_dssp HHHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 689999999999999887654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-13 Score=131.58 Aligned_cols=151 Identities=14% Similarity=0.213 Sum_probs=109.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.+|||+|||+|.||..++..|.+.| ++|.+|+|++++++.+.+. |. ..+++++++++++|+||
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g--~~v~~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~D~Vi 65 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTP--HELIISGSSLERSKEIAEQLAL--------------PYAMSHQDLIDQVDLVI 65 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSS--CEEEEECSSHHHHHHHHHHHTC--------------CBCSSHHHHHHTCSEEE
T ss_pred CccEEEEECCCHHHHHHHHHHHhCC--CeEEEECCCHHHHHHHHHHcCC--------------EeeCCHHHHHhcCCEEE
Confidence 4689999999999999999999998 8999999999988888754 42 23457888888999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
+|+|...+.+++.++ ++++++|++++|+.++. +.+.++.. ..+ +...|+++.....| ...++.+.
T Consensus 66 ~~v~~~~~~~v~~~l----~~~~~vv~~~~~~~~~~-------l~~~~~~~-~~~-v~~~p~~~~~~~~g--~~~i~~~~ 130 (259)
T 2ahr_A 66 LGIKPQLFETVLKPL----HFKQPIISMAAGISLQR-------LATFVGQD-LPL-LRIMPNMNAQILQS--STALTGNA 130 (259)
T ss_dssp ECSCGGGHHHHHTTS----CCCSCEEECCTTCCHHH-------HHHHHCTT-SCE-EEEECCGGGGGTCE--EEEEEECT
T ss_pred EEeCcHhHHHHHHHh----ccCCEEEEeCCCCCHHH-------HHHhcCCC-CCE-EEEcCCchHHHcCc--eEEEEcCC
Confidence 999988888887665 36789999988887642 33333321 122 23456655544444 22233333
Q ss_pred --CHHHHHHHHHHHhcCCceEEEcCC
Q 012596 285 --DRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 285 --d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
+.+.++.++++|+..| .+...++
T Consensus 131 ~~~~~~~~~~~~ll~~~G-~~~~~~~ 155 (259)
T 2ahr_A 131 LVSQELQARVRDLTDSFG-STFDISE 155 (259)
T ss_dssp TCCHHHHHHHHHHHHTTE-EEEECCG
T ss_pred CCCHHHHHHHHHHHHhCC-CEEEecH
Confidence 7888999999999998 4554443
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.1e-14 Score=130.46 Aligned_cols=180 Identities=14% Similarity=0.173 Sum_probs=125.7
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+||| +|.||..++..|+++| ++|++|+|++++.+.+.+. +. ++. +..+. .++..++++++|+||+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~---~~~----~~~~~-~~~~~~~~~~~D~Vi~ 70 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRREEKAEAKAAEYRR---IAG----DASIT-GMKNEDAAEACDIAVL 70 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSHHHHHHHHHHHHH---HHS----SCCEE-EEEHHHHHHHCSEEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc---ccc----cCCCC-hhhHHHHHhcCCEEEE
Confidence 6899999 9999999999999998 8999999999888777653 21 110 01233 2467777889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchh-------hhHHHHHHHHhCCCCCCEEEEEC--cccHHHHhc--c
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL-------RMMSQIIPQALRNPRQPFIALSG--PSFALELMN--K 274 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~-------~~l~e~l~~~lg~~~~~~~v~~g--P~~a~e~~~--g 274 (460)
++|...+.++++++.+.++ +++++++++|+.+++. ....+.+.+.++.. .++.+ |..+..... .
T Consensus 71 ~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~ 145 (212)
T 1jay_A 71 TIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE----KVVSALHTIPAARFANLDE 145 (212)
T ss_dssp CSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS----CEEECCTTCCHHHHHCTTC
T ss_pred eCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCC----eEEEEccchHHHHhhCcCC
Confidence 9999888899988887774 8999999999885310 11234455555431 23344 544443322 2
Q ss_pred CC-eEEEEccCCHHHHHHHHHHHhcC-CceEEEcCChHHHHHHHHHHHHH
Q 012596 275 LP-TAMVVASKDRKLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNVL 322 (460)
Q Consensus 275 ~~-~~i~i~~~d~~~~~~l~~lL~~~-g~~v~~~~Di~g~~~~kalkNv~ 322 (460)
.. ..+++++.+.+..+.++++|+.. |..+...+++....|.|.+.|.+
T Consensus 146 ~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~ 195 (212)
T 1jay_A 146 KFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLI 195 (212)
T ss_dssp CCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHH
T ss_pred CCCccEEEECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHH
Confidence 22 22334444588899999999999 99887777766666666555543
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=135.54 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=131.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCcc----CCCCCCCCceEEeC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRY----FPEQKLPENVIATT 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~-----------~g~~~~~----~~~~~l~~~i~a~~ 191 (460)
++||+|||+|.||+.||..|+++| ++|++||+++++++...+ .|.-... +.......++.+++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 92 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 92 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEec
Confidence 578999999999999999999999 999999999987765432 2210000 00000012467788
Q ss_pred CHHhhcCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCE-EEEECcccH
Q 012596 192 DAKTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF-IALSGPSFA 268 (460)
Q Consensus 192 ~~~ea~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~-~v~~gP~~a 268 (460)
++++++++||+||+|||... ...++.++.+.++++++|++.++|+.... +.+.++.....+ .....|...
T Consensus 93 ~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~-------l~~~~~~~~~~~g~h~~~P~~~ 165 (302)
T 1f0y_A 93 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS-------IANATTRQDRFAGLHFFNPVPV 165 (302)
T ss_dssp CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH-------HHTTSSCGGGEEEEEECSSTTT
T ss_pred CHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHH-------HHHhcCCcccEEEEecCCCccc
Confidence 99888899999999999753 56788889888988999998888877542 223222110001 111223211
Q ss_pred HHHhccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHH
Q 012596 269 LELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346 (460)
Q Consensus 269 ~e~~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~ 346 (460)
+. ...++.+ .+.+.++.+.++++..|..+....|..+ . +.+ .++...
T Consensus 166 -----~~-~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g----~-----------------i~n----r~l~~~ 214 (302)
T 1f0y_A 166 -----MK-LVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG----F-----------------IVN----RLLVPY 214 (302)
T ss_dssp -----CC-EEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT----T-----------------THH----HHHHHH
T ss_pred -----Cc-eEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc----c-----------------cHH----HHHHHH
Confidence 12 2223443 3789999999999999877666555321 0 111 122356
Q ss_pred HHHHHHHHHHcCCCcccccc
Q 012596 347 CSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 347 ~~E~~~la~a~Gi~~~~~~~ 366 (460)
++|+..+++..|++++++..
T Consensus 215 ~~Ea~~l~~~g~~~~~~id~ 234 (302)
T 1f0y_A 215 LMEAIRLYERGDASKEDIDT 234 (302)
T ss_dssp HHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHH
Confidence 89999999999999876643
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-14 Score=131.50 Aligned_cols=162 Identities=16% Similarity=0.185 Sum_probs=116.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+|||+|||+|.||.+++..|++.| ++|++|+|++++++.+.+.| +... +..++++++|+||+|
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~g--------------~~~~-~~~~~~~~~DvVi~a 90 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSG--FKVVVGSRNPKRTARLFPSA--------------AQVT-FQEEAVSSPEVIFVA 90 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSHHHHHHHSBTT--------------SEEE-EHHHHTTSCSEEEEC
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC--------------Ccee-cHHHHHhCCCEEEEC
Confidence 579999999999999999999998 89999999998877765433 2333 677788999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchh---hhHHHHHHHHhCCCCCCEEEEECcccHHHHh----ccCCeEE
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL---RMMSQIIPQALRNPRQPFIALSGPSFALELM----NKLPTAM 279 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~---~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~----~g~~~~i 279 (460)
+|...++++++ +.+.+ +++++|++++|+..++. ....+.+.+.++.. .+.-...+..+.... .+ .+.+
T Consensus 91 v~~~~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~--~vv~~~n~~~~~~~~~~~~~g-~~~~ 165 (215)
T 2vns_A 91 VFREHYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTC--TVVKAFNVISAWTLQAGPRDG-NRQV 165 (215)
T ss_dssp SCGGGSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTS--EEEEECTTBCHHHHHTCSCSS-CCEE
T ss_pred CChHHHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCC--eEEeccccccHhHhcccccCC-ceeE
Confidence 99877777664 65655 78999999999876432 13345666665531 111111222221111 22 2335
Q ss_pred EEccCCHHHHHHHHHHHhcCCceEEEcCChH
Q 012596 280 VVASKDRKLANAVQQLLASKHLRISTSSDVT 310 (460)
Q Consensus 280 ~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~ 310 (460)
.+.+.+.+..+.++++|+..|++++..+++.
T Consensus 166 ~~~g~~~~~~~~v~~ll~~~G~~~~~~g~~~ 196 (215)
T 2vns_A 166 PICGDQPEAKRAVSEMALAMGFMPVDMGSLA 196 (215)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEECCSGG
T ss_pred EEecCCHHHHHHHHHHHHHcCCceEeecchh
Confidence 6677789999999999999999999888864
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.6e-14 Score=138.27 Aligned_cols=203 Identities=11% Similarity=0.101 Sum_probs=126.4
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++||+||| +|.||+++|..|+++| ++|++|+|+++ .+..+++++||+||+
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G--~~V~~~~~~~~---------------------------~~~~~~~~~aDvVil 71 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASG--YPISILDREDW---------------------------AVAESILANADVVIV 71 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTCG---------------------------GGHHHHHTTCSEEEE
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCC--CeEEEEECCcc---------------------------cCHHHHhcCCCEEEE
Confidence 46899999 9999999999999999 89999998763 135567889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d 285 (460)
|||.+.+.++++++.++++++++|++++ |+.... .+.+.+.++....+...+.||.. +...+....+.. +.+
T Consensus 72 avp~~~~~~vl~~l~~~l~~~~iv~~~~-svk~~~----~~~~~~~~~~~~v~~hP~~g~~~--~~~~g~~~~l~~-~~~ 143 (298)
T 2pv7_A 72 SVPINLTLETIERLKPYLTENMLLADLT-SVKREP----LAKMLEVHTGAVLGLHPMFGADI--ASMAKQVVVRCD-GRF 143 (298)
T ss_dssp CSCGGGHHHHHHHHGGGCCTTSEEEECC-SCCHHH----HHHHHHHCSSEEEEEEECSCTTC--SCCTTCEEEEEE-EEC
T ss_pred eCCHHHHHHHHHHHHhhcCCCcEEEECC-CCCcHH----HHHHHHhcCCCEEeeCCCCCCCc--hhhcCCeEEEec-CCC
Confidence 9999999999999999999898888765 343221 12233333321111222344433 122343332222 236
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHH-HHHHHhcc-cCCC--cHHHHHHHHHHHHHHH-HHHHcCCC
Q 012596 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAI-AAGIVVGM-NLGN--NSMAALVAQGCSEIRW-LATKMGAK 360 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai-~~g~~~~~-kl~~--n~~~al~~~~~~E~~~-la~a~Gi~ 360 (460)
.+..+.++++|+..|.+++..++.....+.++.-+.-+. +..+...+ ..+. .....+...++..... +++-.+.+
T Consensus 144 ~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~~~~~~~~ria~~~ 223 (298)
T 2pv7_A 144 PERYEWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQD 223 (298)
T ss_dssp GGGTHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHHHHHHHHHHHhcCC
Confidence 778899999999999998887765555555544443222 11222111 1222 2333445556665333 33334666
Q ss_pred cccccc
Q 012596 361 PATITG 366 (460)
Q Consensus 361 ~~~~~~ 366 (460)
|+...+
T Consensus 224 p~~~~d 229 (298)
T 2pv7_A 224 AELYAD 229 (298)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=135.76 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=126.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||+|||+|.||..||..|+ +| ++|++||++++.+++..+. . .+ ....++..++++++ +++||+||.|
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG--~~V~v~d~~~~~~~~~~~~-l-----~~-~~~~~i~~~~~~~~-~~~aDlViea 80 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SK--HEVVLQDVSEKALEAAREQ-I-----PE-ELLSKIEFTTTLEK-VKDCDIVMEA 80 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSCHHHHHHHHHH-S-----CG-GGGGGEEEESSCTT-GGGCSEEEEC
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cC--CEEEEEECCHHHHHHHHHH-H-----HH-HHhCCeEEeCCHHH-HcCCCEEEEc
Confidence 589999999999999999999 99 9999999999988877765 1 00 01124667778876 7899999999
Q ss_pred cchhc-HH-HHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MPVQF-SS-SFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp~~~-~~-~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
+|... ++ .++.++.+. +++++++.+.++.+.. +.+.+..+ .....++ .|... .+...++.
T Consensus 81 vpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~-------~a~~~~~~~r~~G~Hf~-~Pv~~------~~lveiv~ 144 (293)
T 1zej_A 81 VFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDD-------IAERLDSPSRFLGVHWM-NPPHV------MPLVEIVI 144 (293)
T ss_dssp CCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHH-------HHTTSSCGGGEEEEEEC-SSTTT------CCEEEEEE
T ss_pred CcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHH-------HHHHhhcccceEeEEec-Ccccc------CCEEEEEC
Confidence 99754 44 455666665 7888876555566542 22222111 0112222 24321 22333344
Q ss_pred c--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 283 S--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 283 ~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+ .+++.++++.++++..|..+...+|. .+..+ +....++|++.++++ |++
T Consensus 145 g~~t~~~~~~~~~~l~~~lGk~~v~v~d~------fi~Nr---------------------ll~~~~~EA~~l~~~-Gv~ 196 (293)
T 1zej_A 145 SRFTDSKTVAFVEGFLRELGKEVVVCKGQ------SLVNR---------------------FNAAVLSEASRMIEE-GVR 196 (293)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEESS------CHHHH---------------------HHHHHHHHHHHHHHH-TCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEeccc------ccHHH---------------------HHHHHHHHHHHHHHh-CCC
Confidence 4 47899999999999999887776663 11111 123478999999999 989
Q ss_pred cccccc
Q 012596 361 PATITG 366 (460)
Q Consensus 361 ~~~~~~ 366 (460)
++++.+
T Consensus 197 ~e~id~ 202 (293)
T 1zej_A 197 AEDVDR 202 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-13 Score=138.33 Aligned_cols=198 Identities=17% Similarity=0.215 Sum_probs=130.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--------HHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--------SINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~--------~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
.++||+|||+|.||+.||..|+++| ++|++||+++++.. .+.+.|.-... .-.....++..++|++ ++
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~-~~~~~~~~i~~t~dl~-al 128 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAG--IETFLVVRNEQRCKQELEVMYAREKSFKRLNDK-RIEKINANLKITSDFH-KL 128 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHH-HHHHHHTTEEEESCGG-GC
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHhcceEEeCCHH-HH
Confidence 4689999999999999999999999 99999999988432 22233310000 0001224577888885 68
Q ss_pred CCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhc
Q 012596 198 LGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMN 273 (460)
Q Consensus 198 ~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~~~ 273 (460)
++||+||.|||.. ....++.++.+.++++++|++.+.++.+. .+.+.+..+ .....+ ..|...
T Consensus 129 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~-------~ia~~~~~p~r~iG~Hf-fnPv~~----- 195 (460)
T 3k6j_A 129 SNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN-------EISSVLRDPSNLVGIHF-FNPANV----- 195 (460)
T ss_dssp TTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH-------HHHTTSSSGGGEEEEEC-CSSTTT-----
T ss_pred ccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH-------HHHHhccCCcceEEEEe-cchhhh-----
Confidence 9999999999964 34678889999999999998877776653 233332211 011111 224321
Q ss_pred cCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012596 274 KLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (460)
Q Consensus 274 g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~ 351 (460)
. +...++.+ .+++.++.+.++++..|..++...|..|. +.| .+....++|++
T Consensus 196 m-~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGf-----i~N--------------------ril~~~~~EA~ 249 (460)
T 3k6j_A 196 I-RLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSF-----VFN--------------------RLLHVYFDQSQ 249 (460)
T ss_dssp C-CEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCHH-----HHH--------------------HHHHHHHHHHH
T ss_pred C-CEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccHH-----HHH--------------------HHHHHHHHHHH
Confidence 1 22223333 37899999999999999888887775442 111 12223578888
Q ss_pred HHHHHcCCCcccccc
Q 012596 352 WLATKMGAKPATITG 366 (460)
Q Consensus 352 ~la~a~Gi~~~~~~~ 366 (460)
.++++.|++++++..
T Consensus 250 ~l~~~~Ga~~e~ID~ 264 (460)
T 3k6j_A 250 KLMYEYGYLPHQIDK 264 (460)
T ss_dssp HHHHTSCCCHHHHHH
T ss_pred HHHHHcCCCHHHHHH
Confidence 888888888776543
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-15 Score=139.38 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=108.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.|||+|||+|+||.++|..|.+.| ++|++|+|+++ .+.+...+ +... +..++++++|+||+
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~G--~~V~~~~r~~~-~~~~~~~g--------------~~~~-~~~~~~~~aDvVil 79 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQCG--YSVVFGSRNPQ-VSSLLPRG--------------AEVL-CYSEAASRSDVIVL 79 (201)
Confidence 3579999999999999999999998 89999999876 44333222 2233 56677889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchh-hhHHHHHHHHhCCCCCCEEEEECcccHHHHhc-----cCCeEE
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL-RMMSQIIPQALRNPRQPFIALSGPSFALELMN-----KLPTAM 279 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~-~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~-----g~~~~i 279 (460)
+||.+.+++++ ++.+. .++++||++++|+..... ..-.+.+.+.++.. ..+..-|........ +..+ .
T Consensus 80 av~~~~~~~v~-~l~~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~---~vvra~~n~~a~~~~~g~l~g~~~-~ 153 (201)
T 2yjz_A 80 AVHREHYDFLA-ELADS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGA---HVVKAFNTISAWALQSGTLDASRQ-V 153 (201)
Confidence 99998888877 55543 468899999999853110 00012333333321 112222222222111 1111 2
Q ss_pred EEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHH
Q 012596 280 VVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 280 ~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
.+.+++.+.++.++++|+..|+++...+++....|.
T Consensus 154 ~~~g~~~~~~~~v~~ll~~~G~~~~~~G~l~~a~~~ 189 (201)
T 2yjz_A 154 FVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKEI 189 (201)
Confidence 445567788999999999999998887775443333
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=141.83 Aligned_cols=198 Identities=16% Similarity=0.197 Sum_probs=129.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCC---CCCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPE---QKLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g-------~~~~~~~~---~~l~~~i~a~~~~~e 195 (460)
.++||+|||+|.||+.||..|+++| ++|++||++++.++++.+.- .....+.. .....++..+++++
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 80 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHG--HQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH- 80 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-
Confidence 4579999999999999999999999 99999999999887765420 00000000 00112467778885
Q ss_pred hcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHH
Q 012596 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALEL 271 (460)
Q Consensus 196 a~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~ 271 (460)
++++||+||+|||.. ....++.++.+.+++++++++.+.++.++ .+.+.+..+ .....+ ..|...
T Consensus 81 ~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~-------~ia~~~~~p~~~ig~hf-~~Pa~v--- 149 (483)
T 3mog_A 81 ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT-------AIAAEIKNPERVAGLHF-FNPAPV--- 149 (483)
T ss_dssp GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHTTTSSSGGGEEEEEE-CSSTTT---
T ss_pred HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH-------HHHHHccCccceEEeee-cChhhh---
Confidence 579999999999976 34678899999999999988877777654 233332211 011112 222211
Q ss_pred hccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (460)
Q Consensus 272 ~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E 349 (460)
.. ...++.+ .+.+.++.+.++++..|..+....|..| . +.|+ +....++|
T Consensus 150 --~~-Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~G----f-----------------i~Nr----~l~~~~~E 201 (483)
T 3mog_A 150 --MK-LVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPG----F-----------------IVNR----VARPYYSE 201 (483)
T ss_dssp --CC-EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT----T-----------------THHH----HTHHHHHH
T ss_pred --CC-eEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccCc----c-----------------hHHH----HHHHHHHH
Confidence 11 2223333 2788999999999999988777666432 1 1122 12236788
Q ss_pred HHHHHHHcCCCccccc
Q 012596 350 IRWLATKMGAKPATIT 365 (460)
Q Consensus 350 ~~~la~a~Gi~~~~~~ 365 (460)
+..++++.+++++++.
T Consensus 202 a~~l~~~g~~~~~~id 217 (483)
T 3mog_A 202 AWRALEEQVAAPEVID 217 (483)
T ss_dssp HHHHHHTTCSCHHHHH
T ss_pred HHHHHHhCCCCHHHHH
Confidence 8888888888776553
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-14 Score=142.73 Aligned_cols=159 Identities=14% Similarity=0.199 Sum_probs=118.2
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|+ |.++++||+..... +.....+|.++.+.|.. |.+... +.++ ..++|||||+|.||.
T Consensus 88 ~~gI~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~~---~~~l--~g~tvGIIG~G~IG~ 158 (330)
T 4e5n_A 88 ARGVWLTFVPD-LLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRG---WQPRFY---GTGL--DNATVGFLGMGAIGL 158 (330)
T ss_dssp HTTCEEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCS---CCSCCC---CCCS--TTCEEEEECCSHHHH
T ss_pred hcCcEEEeCCC-CCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccc---cCcccc---CCcc--CCCEEEEEeeCHHHH
Confidence 46799999999 99999999998855 66666778888888853 544222 2334 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|.+|...| ++|++|+|++...+...+.| +.. .+++++++.+|+|++++|.+ .+..++ .+
T Consensus 159 ~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~g--------------~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 221 (330)
T 4e5n_A 159 AMADRLQGWG--ATLQYHEAKALDTQTEQRLG--------------LRQ-VACSELFASSDFILLALPLNADTLHLVNAE 221 (330)
T ss_dssp HHHHHTTTSC--CEEEEECSSCCCHHHHHHHT--------------EEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCCCcHhHHHhcC--------------cee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHH
Confidence 9999999877 99999999863333333333 222 37889899999999999954 455555 45
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
....+++++++|++++|-..++ ..+.+.+.+
T Consensus 222 ~l~~mk~gailIN~arg~~vd~-~aL~~aL~~ 252 (330)
T 4e5n_A 222 LLALVRPGALLVNPCRGSVVDE-AAVLAALER 252 (330)
T ss_dssp HHTTSCTTEEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCCchhCH-HHHHHHHHh
Confidence 6778899999999998866553 234444443
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=135.87 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=112.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC----CCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL----GADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~----~aDi 202 (460)
.+||+|||+|.||++||..|.++| ++|++|||+++.++.+.+.|. ..+++++++++ ++|+
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G--~~V~~~dr~~~~~~~a~~~G~--------------~~~~~~~e~~~~a~~~aDl 71 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAAN--HSVFGYNRSRSGAKSAVDEGF--------------DVSADLEATLQRAAAEDAL 71 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHTTC--------------CEESCHHHHHHHHHHTTCE
T ss_pred CCEEEEEeecHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------eeeCCHHHHHHhcccCCCE
Confidence 579999999999999999999999 999999999998888777653 23457776654 4799
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC-CCCCCEEEEECccc-----HH-HHhccC
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR-NPRQPFIALSGPSF-----AL-ELMNKL 275 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg-~~~~~~~v~~gP~~-----a~-e~~~g~ 275 (460)
||+|||...+.++++++.++ +++++|++++. +-.. +.+.+.+.+. ..+++...+.|+.. +. ++..|.
T Consensus 72 VilavP~~~~~~vl~~l~~~-~~~~iv~Dv~S-vk~~----i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~ 145 (341)
T 3ktd_A 72 IVLAVPMTAIDSLLDAVHTH-APNNGFTDVVS-VKTA----VYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRA 145 (341)
T ss_dssp EEECSCHHHHHHHHHHHHHH-CTTCCEEECCS-CSHH----HHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTC
T ss_pred EEEeCCHHHHHHHHHHHHcc-CCCCEEEEcCC-CChH----HHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCC
Confidence 99999998899999999886 78888888753 3322 1223333221 11222334444431 11 123343
Q ss_pred CeEEEEcc---CCHH--------HHHHHHHHHhcCCceEEEcCChHHHHHH
Q 012596 276 PTAMVVAS---KDRK--------LANAVQQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 276 ~~~i~i~~---~d~~--------~~~~l~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
+. ++.. .+.+ .++.++++|+..|.+++..+.-.+....
T Consensus 146 ~~--iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~ 194 (341)
T 3ktd_A 146 VW--VVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAA 194 (341)
T ss_dssp EE--EECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHH
T ss_pred eE--EEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence 33 3432 2445 7899999999999888776554444433
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-14 Score=142.73 Aligned_cols=159 Identities=11% Similarity=0.118 Sum_probs=117.4
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|+ |...++||+..... +.....++.++.+.|+. ......+.++ ..++|||||+|.||.
T Consensus 107 ~~gI~V~n~~g-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~------~~~~~~~~~l--~gktvGIIG~G~IG~ 177 (351)
T 3jtm_A 107 AAGLTVAEVTG-SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV------AGIAYRAYDL--EGKTIGTVGAGRIGK 177 (351)
T ss_dssp HTTCEEEECTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCH------HHHHTTCCCS--TTCEEEEECCSHHHH
T ss_pred hcCeeEEECCC-cCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCcc------ccccCCcccc--cCCEEeEEEeCHHHH
Confidence 46799999999 99999999998854 55556677778887743 1111112334 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|++|...| ++|++|+|++...+...+.| +...++++++++.||+|++++|.+ .+..++ .+
T Consensus 178 ~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~ 241 (351)
T 3jtm_A 178 LLLQRLKPFG--CNLLYHDRLQMAPELEKETG--------------AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKE 241 (351)
T ss_dssp HHHHHHGGGC--CEEEEECSSCCCHHHHHHHC--------------CEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHH
T ss_pred HHHHHHHHCC--CEEEEeCCCccCHHHHHhCC--------------CeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHH
Confidence 9999999888 89999999864444444443 234458999999999999999954 555555 45
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
....+++++++|++++|-..++ ..+.+.+.
T Consensus 242 ~l~~mk~gailIN~aRG~~vde-~aL~~aL~ 271 (351)
T 3jtm_A 242 LIGKLKKGVLIVNNARGAIMER-QAVVDAVE 271 (351)
T ss_dssp HHHHSCTTEEEEECSCGGGBCH-HHHHHHHH
T ss_pred HHhcCCCCCEEEECcCchhhCH-HHHHHHHH
Confidence 6677899999999999876654 23444444
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-14 Score=140.84 Aligned_cols=160 Identities=13% Similarity=0.219 Sum_probs=115.5
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|+ +...++||+..... +.....++.++.+.|.. |.+.+. .+.++ ..++|+|||+|.||.
T Consensus 97 ~~gi~v~n~~~-~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~~--~~~~l--~g~~vgIIG~G~iG~ 168 (330)
T 2gcg_A 97 KRGIRVGYTPD-VLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTS---WKPLWL--CGYGL--TQSTVGIIGLGRIGQ 168 (330)
T ss_dssp HTTCEEECCCS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCS---CCTTSS--CBCCC--TTCEEEEECCSHHHH
T ss_pred hCCceEEeCCC-CChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcc---cCcccc--cCcCC--CCCEEEEECcCHHHH
Confidence 45789999999 99999999988854 55556677788887743 322111 12234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|..|+..| ++|++|+|+.+..+...+.| +... +++++++++|+|++++|.+ .++.++ .+
T Consensus 169 ~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g--------------~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~ 231 (330)
T 2gcg_A 169 AIARRLKPFG--VQRFLYTGRQPRPEEAAEFQ--------------AEFV-STPELAAQSDFIVVACSLTPATEGLCNKD 231 (330)
T ss_dssp HHHHHHGGGT--CCEEEEESSSCCHHHHHTTT--------------CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHH
T ss_pred HHHHHHHHCC--CEEEEECCCCcchhHHHhcC--------------ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHH
Confidence 9999999888 89999999875444443322 2333 7888889999999999975 455555 45
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
+.+.+++++++|++++|-..++ ..+.+.+.+
T Consensus 232 ~~~~mk~gailIn~srg~~v~~-~aL~~aL~~ 262 (330)
T 2gcg_A 232 FFQKMKETAVFINISRGDVVNQ-DDLYQALAS 262 (330)
T ss_dssp HHHHSCTTCEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHhcCCCCcEEEECCCCcccCH-HHHHHHHHc
Confidence 6677889999999998754432 344445543
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.4e-14 Score=139.40 Aligned_cols=145 Identities=15% Similarity=0.194 Sum_probs=102.5
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|+ +..+++||+..... +.....+|.++.+.|++. . .+ ..+.++ ..++|||||+|.||.
T Consensus 114 ~~gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~---~-~~--~~~~~l--~gktiGIIGlG~IG~ 184 (340)
T 4dgs_A 114 RRNIDVTTTPG-VLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAG---E-QL--PLGHSP--KGKRIGVLGLGQIGR 184 (340)
T ss_dssp HTTCEEECCCS-SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------------CCCCCC--TTCEEEEECCSHHHH
T ss_pred hCCEEEEECCC-CCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccc---c-Cc--Cccccc--cCCEEEEECCCHHHH
Confidence 35799999998 99999999988744 666677888888888541 0 01 112334 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-hcHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~~~~vl-~~ 218 (460)
.+|.+|...| ++|++|+|+++. .. ......++++++++||+|++++|. ..+..++ ++
T Consensus 185 ~vA~~l~~~G--~~V~~~dr~~~~-----~~--------------~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~ 243 (340)
T 4dgs_A 185 ALASRAEAFG--MSVRYWNRSTLS-----GV--------------DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDAS 243 (340)
T ss_dssp HHHHHHHTTT--CEEEEECSSCCT-----TS--------------CCEECSSHHHHHHTCSEEEECC----------CHH
T ss_pred HHHHHHHHCC--CEEEEEcCCccc-----cc--------------CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHH
Confidence 9999999888 899999998642 00 123446899999999999999995 4567776 56
Q ss_pred hhhcCCCCCeEEEeccCCccc
Q 012596 219 ISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
..+.+++++++|++++|-..+
T Consensus 244 ~l~~mk~gailIN~aRG~vvd 264 (340)
T 4dgs_A 244 LLQALGPEGIVVNVARGNVVD 264 (340)
T ss_dssp HHHHTTTTCEEEECSCC----
T ss_pred HHhcCCCCCEEEECCCCcccC
Confidence 777889999999999986554
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-13 Score=139.15 Aligned_cols=162 Identities=15% Similarity=0.279 Sum_probs=117.5
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhc-ccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKL-VRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
+.++.|+|+|. |...++||+..... +.....++.++.+.|.+. .+|.+.. ..+.++ ..++|+|||+|.||
T Consensus 88 ~~gi~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~l--~g~~vgIIG~G~iG 162 (334)
T 2dbq_A 88 KRGIYVTNTPD-VLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKW--FLGYDV--YGKTIGIIGLGRIG 162 (334)
T ss_dssp HTTCEEECCCS-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTT--TCCCCC--TTCEEEEECCSHHH
T ss_pred hCCCEEEeCCC-cCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccccccccc--ccccCC--CCCEEEEEccCHHH
Confidence 45789999999 99999999988744 555566788888888420 1132111 112234 36899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl-~ 217 (460)
..+|..|+..| ++|++|+|+++. +...+.|. .. .+++++++++|+|++++|.+. ++.++ .
T Consensus 163 ~~iA~~l~~~G--~~V~~~d~~~~~-~~~~~~g~--------------~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~ 224 (334)
T 2dbq_A 163 QAIAKRAKGFN--MRILYYSRTRKE-EVERELNA--------------EF-KPLEDLLRESDFVVLAVPLTRETYHLINE 224 (334)
T ss_dssp HHHHHHHHHTT--CEEEEECSSCCH-HHHHHHCC--------------EE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred HHHHHHHHhCC--CEEEEECCCcch-hhHhhcCc--------------cc-CCHHHHHhhCCEEEECCCCChHHHHhhCH
Confidence 99999999988 899999998866 43333331 22 378888899999999999765 66655 4
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
++.+.+++++++|++++|...++ ..+.+.+.+
T Consensus 225 ~~~~~mk~~ailIn~srg~~v~~-~aL~~aL~~ 256 (334)
T 2dbq_A 225 ERLKLMKKTAILINIARGKVVDT-NALVKALKE 256 (334)
T ss_dssp HHHHHSCTTCEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHHhcCCCCcEEEECCCCcccCH-HHHHHHHHh
Confidence 56677889999999999866553 234444543
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-12 Score=140.18 Aligned_cols=198 Identities=14% Similarity=0.179 Sum_probs=130.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCC---CCCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPE---QKLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-------g~~~~~~~~---~~l~~~i~a~~~~~e 195 (460)
.++||+|||+|.||+.||..|+++| ++|++||++++.++...+. ......++. .....++..++|+ +
T Consensus 311 ~~~kV~VIGaG~MG~~iA~~la~aG--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~ 387 (725)
T 2wtb_A 311 KIKKVAIIGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-E 387 (725)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHTTT--CCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-G
T ss_pred cCcEEEEEcCCHhhHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-H
Confidence 3578999999999999999999999 9999999999877654321 000001111 0123457788888 5
Q ss_pred hcCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHH
Q 012596 196 ALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALEL 271 (460)
Q Consensus 196 a~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~ 271 (460)
++++||+||+|||... ...++.++.+++++++++++.++++.+.+ +.+.+..+ .....+ ..|...
T Consensus 388 ~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~-------la~~~~~p~~~iG~hf-~~P~~~--- 456 (725)
T 2wtb_A 388 SFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNK-------IGERTKSQDRIVGAHF-FSPAHI--- 456 (725)
T ss_dssp GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH-------HTTTCSCTTTEEEEEE-CSSTTT---
T ss_pred HHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH-------HHHHhcCCCCEEEecC-CCCccc---
Confidence 6899999999999764 46788889999999998888777776532 33322211 111122 234321
Q ss_pred hccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (460)
Q Consensus 272 ~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E 349 (460)
.+...++.+ .+.+.++.+.++++..|..+....|..|. +. | .+....++|
T Consensus 457 ---~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~-----------------N---ril~~~~~E 508 (725)
T 2wtb_A 457 ---MPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGF-----AV-----------------N---RMFFPYTQA 508 (725)
T ss_dssp ---CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESSTTT-----TH-----------------H---HHHHHHHHH
T ss_pred ---CceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HH-----------------H---HHHHHHHHH
Confidence 122223443 37899999999999999887776664321 11 1 122345788
Q ss_pred HHHHHHHcCCCcccccc
Q 012596 350 IRWLATKMGAKPATITG 366 (460)
Q Consensus 350 ~~~la~a~Gi~~~~~~~ 366 (460)
+..+++. |++++++..
T Consensus 509 a~~l~~~-G~~~e~id~ 524 (725)
T 2wtb_A 509 AMFLVEC-GADPYLIDR 524 (725)
T ss_dssp HHHHHHT-TCCHHHHHH
T ss_pred HHHHHHC-CCCHHHHHH
Confidence 8888887 888766543
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-13 Score=138.10 Aligned_cols=162 Identities=10% Similarity=0.118 Sum_probs=118.4
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcc----cceeeeeccccchhccCCCeEEEECcc
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLV----RWSRTWRSKAKTDILERTNKVVVLGGG 136 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~kI~IIGaG 136 (460)
+.++.|+|.|. | ++++||+..... +.....++.++.+.|+... .|.+.+. .+.++ ..++|||||+|
T Consensus 96 ~~gI~V~n~pg-~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~--~~~~l--~g~tvGIIGlG 169 (352)
T 3gg9_A 96 DKGVVVLEGKG-S-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFG--IGRVL--KGQTLGIFGYG 169 (352)
T ss_dssp HHTCEEECCCC-C-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTT--SBCCC--TTCEEEEECCS
T ss_pred hCCeEEEECCC-C-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccc--cCccC--CCCEEEEEeEC
Confidence 45799999999 8 999999998844 5566677888888886532 2332111 12334 36899999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHH
Q 012596 137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSF 215 (460)
Q Consensus 137 ~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~v 215 (460)
.||..+|.+|...| ++|++|+|+.. .+...+.| +...+++++++++||+|++++|.+ .++.+
T Consensus 170 ~IG~~vA~~l~~~G--~~V~~~d~~~~-~~~~~~~g--------------~~~~~~l~ell~~aDiV~l~~Plt~~t~~l 232 (352)
T 3gg9_A 170 KIGQLVAGYGRAFG--MNVLVWGRENS-KERARADG--------------FAVAESKDALFEQSDVLSVHLRLNDETRSI 232 (352)
T ss_dssp HHHHHHHHHHHHTT--CEEEEECSHHH-HHHHHHTT--------------CEECSSHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred HHHHHHHHHHHhCC--CEEEEECCCCC-HHHHHhcC--------------ceEeCCHHHHHhhCCEEEEeccCcHHHHHh
Confidence 99999999999888 99999999863 23333333 234458899999999999999954 45555
Q ss_pred H-HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 216 L-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 216 l-~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
+ .+..+.+++++++|++++|-..++ ..+.+.+.+
T Consensus 233 i~~~~l~~mk~gailIN~aRg~~vd~-~aL~~aL~~ 267 (352)
T 3gg9_A 233 ITVADLTRMKPTALFVNTSRAELVEE-NGMVTALNR 267 (352)
T ss_dssp BCHHHHTTSCTTCEEEECSCGGGBCT-THHHHHHHH
T ss_pred hCHHHHhhCCCCcEEEECCCchhhcH-HHHHHHHHh
Confidence 4 356677899999999998866553 344455544
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-14 Score=140.99 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=116.9
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|+ |..+++||+..... +.....+|.++.+.|++ |.+.. ..+.++ ..++|||||+|.||.
T Consensus 115 ~~gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~---~~~~~--~~g~~l--~gktvGIIGlG~IG~ 186 (345)
T 4g2n_A 115 SLGIKVLHTPD-VLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPG---WGPTQ--LLGMGL--TGRRLGIFGMGRIGR 186 (345)
T ss_dssp HTTCEEECCCS-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC---CCTTT--TCBCCC--TTCEEEEESCSHHHH
T ss_pred hCCEEEEECCc-ccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcc---cCccc--cccccc--CCCEEEEEEeChhHH
Confidence 35799999998 99999999998744 66677788888888853 33211 113345 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-hcHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~~~~vl-~~ 218 (460)
.+|++|...| ++|++|||++...+... + +...+++++++++||+|++++|. ..+..++ .+
T Consensus 187 ~vA~~l~~~G--~~V~~~dr~~~~~~~~~--g--------------~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~ 248 (345)
T 4g2n_A 187 AIATRARGFG--LAIHYHNRTRLSHALEE--G--------------AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHD 248 (345)
T ss_dssp HHHHHHHTTT--CEEEEECSSCCCHHHHT--T--------------CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCCcchhhhc--C--------------CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHH
Confidence 9999999877 99999999863222111 2 23445899999999999999995 4455555 45
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
....+++++++|++++|-..++ ..+.+.+.
T Consensus 249 ~l~~mk~gailIN~aRG~~vde-~aL~~aL~ 278 (345)
T 4g2n_A 249 RIAKIPEGAVVINISRGDLIND-DALIEALR 278 (345)
T ss_dssp HHHHSCTTEEEEECSCGGGBCH-HHHHHHHH
T ss_pred HHhhCCCCcEEEECCCCchhCH-HHHHHHHH
Confidence 6677899999999999876654 23444443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.1e-14 Score=139.36 Aligned_cols=154 Identities=15% Similarity=0.214 Sum_probs=113.8
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|+ |..+++||+..... +.....++.++.+.|+. . .+ ..+.++ ..++|||||+|.||.
T Consensus 108 ~~gI~v~n~pg-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~----~-~~--~~~~~l--~g~~vgIIG~G~iG~ 177 (333)
T 3ba1_A 108 EKGVRVTNTPD-VLTDDVADLAIGLILAVLRRICECDKYVRRGAWKF----G-DF--KLTTKF--SGKRVGIIGLGRIGL 177 (333)
T ss_dssp HHTCEEECCCS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGG----C-CC--CCCCCC--TTCCEEEECCSHHHH
T ss_pred hCCcEEEECCC-cchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc----c-cc--cccccc--CCCEEEEECCCHHHH
Confidence 34689999999 99999999998854 55556677788887742 1 11 112234 357999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|..|...| ++|++|+|+++..+ | +....+++++++++|+|++++|.+ .++.++ ++
T Consensus 178 ~vA~~l~~~G--~~V~~~dr~~~~~~-----g--------------~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~ 236 (333)
T 3ba1_A 178 AVAERAEAFD--CPISYFSRSKKPNT-----N--------------YTYYGSVVELASNSDILVVACPLTPETTHIINRE 236 (333)
T ss_dssp HHHHHHHTTT--CCEEEECSSCCTTC-----C--------------SEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCchhcc-----C--------------ceecCCHHHHHhcCCEEEEecCCChHHHHHhhHH
Confidence 9999999888 89999999864211 1 234568888899999999999975 466666 34
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
+.+.+++++++|++++|...++ ..+.+.+.+
T Consensus 237 ~l~~mk~gailIn~srG~~vd~-~aL~~aL~~ 267 (333)
T 3ba1_A 237 VIDALGPKGVLINIGRGPHVDE-PELVSALVE 267 (333)
T ss_dssp HHHHHCTTCEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHhcCCCCCEEEECCCCchhCH-HHHHHHHHc
Confidence 5567889999999999877654 334444443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=136.95 Aligned_cols=160 Identities=11% Similarity=0.179 Sum_probs=114.8
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|+ |..+++||+..... +.....++.++.+.|+. |.+.. ..+.++ ..++|||||+|.||.
T Consensus 88 ~~gi~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~---~~~~~--~~~~~l--~g~~vgIIG~G~IG~ 159 (320)
T 1gdh_A 88 ARGIKVGNAPH-GVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPG---WEPLE--LVGEKL--DNKTLGIYGFGSIGQ 159 (320)
T ss_dssp HTTCEEECCCC-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---CCTTT--TCBCCC--TTCEEEEECCSHHHH
T ss_pred hCCcEEEEcCC-CCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCc---ccccc--ccCcCC--CCCEEEEECcCHHHH
Confidence 45799999999 99999999988744 55555677788887742 22111 112234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeC-CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-H
Q 012596 141 AMAAHVANKKSQLKVYMLMR-DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-E 217 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r-~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~ 217 (460)
.+|.+|...| ++|++|+| +++.. ...+.| +...++++++++++|+|++++|.. .+..++ +
T Consensus 160 ~~A~~l~~~G--~~V~~~d~~~~~~~-~~~~~g--------------~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~ 222 (320)
T 1gdh_A 160 ALAKRAQGFD--MDIDYFDTHRASSS-DEASYQ--------------ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK 222 (320)
T ss_dssp HHHHHHHTTT--CEEEEECSSCCCHH-HHHHHT--------------CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH
T ss_pred HHHHHHHHCC--CEEEEECCCCcChh-hhhhcC--------------cEEcCCHHHHHhhCCEEEEeccCchHHHhhcCH
Confidence 9999999888 89999999 77542 233333 233447888889999999999965 466655 4
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
+..+.+++++++|+++.|-..+. ..+.+.+.+
T Consensus 223 ~~l~~mk~gailIn~arg~~vd~-~aL~~aL~~ 254 (320)
T 1gdh_A 223 ATIKSLPQGAIVVNTARGDLVDN-ELVVAALEA 254 (320)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHHhhCCCCcEEEECCCCcccCH-HHHHHHHHh
Confidence 46677899999999998744332 234444443
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-11 Score=136.41 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=127.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~-----------~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
..+||+|||+|.||+.||..|+++| ++|++||++++.++...+ .|.-... .......++..++++
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~d~- 388 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKG--TPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPA-KMAEVLNGIRPTLSY- 388 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHH-HHHHHHHHEEEESSS-
T ss_pred cCCEEEEECCChhhHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHhcCeEEECCH-
Confidence 4679999999999999999999999 999999999987765321 1210000 000011236677788
Q ss_pred hhcCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHH
Q 012596 195 TALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALE 270 (460)
Q Consensus 195 ea~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e 270 (460)
+++++||+||+|||... ...++.++.++++++++|++.++++.+.. +.+.+..+ .... ....|...
T Consensus 389 ~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~-------la~~~~~~~~~ig~-hf~~P~~~-- 458 (715)
T 1wdk_A 389 GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISL-------LAKALKRPENFVGM-HFFNPVHM-- 458 (715)
T ss_dssp TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHH-------HGGGCSCGGGEEEE-ECCSSTTT--
T ss_pred HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHH-------HHHHhcCccceEEE-EccCCccc--
Confidence 66899999999999654 46688889999999999988777776531 33322211 0111 11223321
Q ss_pred HhccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012596 271 LMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (460)
Q Consensus 271 ~~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~ 348 (460)
.+...++.+ .+.+.++.+.++++..|..++...|..|. +. | .+....++
T Consensus 459 ----~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~-----------------N---ril~~~~~ 509 (715)
T 1wdk_A 459 ----MPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF-----LV-----------------N---RVLFPYFG 509 (715)
T ss_dssp ----CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTTT-----TH-----------------H---HHHHHHHH
T ss_pred ----CceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCCh-----hh-----------------h---HHHHHHHH
Confidence 122223333 27899999999999999887776664321 11 1 12234578
Q ss_pred HHHHHHHHcCCCcccccc
Q 012596 349 EIRWLATKMGAKPATITG 366 (460)
Q Consensus 349 E~~~la~a~Gi~~~~~~~ 366 (460)
|+..+++. |++++++..
T Consensus 510 Ea~~l~~~-G~~~~~id~ 526 (715)
T 1wdk_A 510 GFAKLVSA-GVDFVRIDK 526 (715)
T ss_dssp HHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHH
Confidence 88888886 888766543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-13 Score=136.47 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=111.0
Q ss_pred ceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHH
Q 012596 67 NTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAM 142 (460)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~ 142 (460)
++.|+|.|+ |...++||+..... +.....++.++.+.|+. . ...++ ..++|||||+|.||..+
T Consensus 89 gI~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~------~----~~~~l--~g~tvGIIGlG~IG~~v 155 (324)
T 3hg7_A 89 DYQLTNVRG-IFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS------H----PYQGL--KGRTLLILGTGSIGQHI 155 (324)
T ss_dssp SSEEECCCS-CCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC------C----CCCCS--TTCEEEEECCSHHHHHH
T ss_pred CEEEEECCC-cChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcC------C----CCccc--ccceEEEEEECHHHHHH
Confidence 699999998 99999999998844 55556677777777743 1 12234 36899999999999999
Q ss_pred HHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHhh
Q 012596 143 AAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGIS 220 (460)
Q Consensus 143 A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i~ 220 (460)
|.+|...| ++|++|+|+++..+ .. .......++++++++||+|++++|.+ .++.++ .+..
T Consensus 156 A~~l~~~G--~~V~~~dr~~~~~~-----~~-----------~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l 217 (324)
T 3hg7_A 156 AHTGKHFG--MKVLGVSRSGRERA-----GF-----------DQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRF 217 (324)
T ss_dssp HHHHHHTT--CEEEEECSSCCCCT-----TC-----------SEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTT
T ss_pred HHHHHhCC--CEEEEEcCChHHhh-----hh-----------hcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHH
Confidence 99999888 99999999863111 00 01112357889999999999999954 466655 3466
Q ss_pred hcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 221 DYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 221 ~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
..+++++++|++++|-..++ ..+.+.+.
T Consensus 218 ~~mk~gailIN~aRG~~vde-~aL~~aL~ 245 (324)
T 3hg7_A 218 EHCKPGAILFNVGRGNAINE-GDLLTALR 245 (324)
T ss_dssp TCSCTTCEEEECSCGGGBCH-HHHHHHHH
T ss_pred hcCCCCcEEEECCCchhhCH-HHHHHHHH
Confidence 77899999999999876654 23334443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-13 Score=139.29 Aligned_cols=159 Identities=10% Similarity=0.063 Sum_probs=114.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|. +..+++||+..... +.....++.++++.|+. .+....+.++ ..++|||||+|.||.
T Consensus 134 ~~gI~V~n~~g-~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~------~~~~~~~~~l--~gktvGIIGlG~IG~ 204 (393)
T 2nac_A 134 DRNVTVAEVTY-CNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNI------ADCVSHAYDL--EAMHVGTVAAGRIGL 204 (393)
T ss_dssp HTTCEEEECTT-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH------HHHHTTCCCC--TTCEEEEECCSHHHH
T ss_pred cCCEEEEeCCC-cccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCc------cccccCCccC--CCCEEEEEeECHHHH
Confidence 35799999998 88899999998855 44445667777777743 1111112234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|++|...| ++|++|+|++...+...+.|. ....+++++++.+|+|++++|.+ .++.++ ++
T Consensus 205 ~vA~~l~a~G--~~V~~~d~~~~~~~~~~~~G~--------------~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~ 268 (393)
T 2nac_A 205 AVLRRLAPFD--VHLHYTDRHRLPESVEKELNL--------------TWHATREDMYPVCDVVTLNCPLHPETEHMINDE 268 (393)
T ss_dssp HHHHHHGGGT--CEEEEECSSCCCHHHHHHHTC--------------EECSSHHHHGGGCSEEEECSCCCTTTTTCBSHH
T ss_pred HHHHHHHhCC--CEEEEEcCCccchhhHhhcCc--------------eecCCHHHHHhcCCEEEEecCCchHHHHHhhHH
Confidence 9999999888 999999998644333333332 23347889999999999999964 566666 45
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
..+.+++++++|++++|-..++ ..+.+.+.
T Consensus 269 ~l~~mk~gailIN~aRG~~vde-~aL~~aL~ 298 (393)
T 2nac_A 269 TLKLFKRGAYIVNTARGKLCDR-DAVARALE 298 (393)
T ss_dssp HHTTSCTTEEEEECSCGGGBCH-HHHHHHHH
T ss_pred HHhhCCCCCEEEECCCchHhhH-HHHHHHHH
Confidence 6678899999999998855543 23344443
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-11 Score=126.14 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=109.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----------cCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----------HCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-----------g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
.++||+|||+|.||+.||..|+++| ++|++||++++.++...+. |.. . +...-.....+++++
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~-~--~~~~~~~~~~i~~~~- 109 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVG--ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQ-N--GQASAKPKLRFSSST- 109 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHH-T--TCCCCCCCEEEESCG-
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCC-C--HHHHHHHHhhhcCCH-
Confidence 4689999999999999999999999 9999999999877655431 100 0 000001123456777
Q ss_pred hhcCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHH
Q 012596 195 TALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALE 270 (460)
Q Consensus 195 ea~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e 270 (460)
+++++||+||+|||... ...++.++.+.++++++|++.+.++... .+.+.+..+ .....+ ..|...
T Consensus 110 ~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~-------~la~~~~~~~~~ig~hf-~~P~~~-- 179 (463)
T 1zcj_A 110 KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD-------DIASSTDRPQLVIGTHF-FSPAHV-- 179 (463)
T ss_dssp GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHHTTSSCGGGEEEEEE-CSSTTT--
T ss_pred HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHH-------HHHHHhcCCcceEEeec-CCCccc--
Confidence 45789999999999753 4678888989999999998866555432 223322211 011122 245321
Q ss_pred HhccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChH
Q 012596 271 LMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVT 310 (460)
Q Consensus 271 ~~~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~ 310 (460)
.....++.+ ..+.+.++.+.++++..|..+....|..
T Consensus 180 ---~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~ 217 (463)
T 1zcj_A 180 ---MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCY 217 (463)
T ss_dssp ---CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCST
T ss_pred ---ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCc
Confidence 121222233 3578999999999999988777766643
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-13 Score=137.64 Aligned_cols=158 Identities=10% Similarity=0.112 Sum_probs=114.6
Q ss_pred ceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHH
Q 012596 67 NTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAM 142 (460)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~ 142 (460)
++.|+|+|+ |.+.++||+..... +.....++.++.+.|+. ......+.++ ..++|||||+|.||..+
T Consensus 109 gI~V~n~pg-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~------~~~~~~~~~l--~g~tvgIIG~G~IG~~v 179 (364)
T 2j6i_A 109 KISVLEVTG-SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEV------AAIAKDAYDI--EGKTIATIGAGRIGYRV 179 (364)
T ss_dssp CCEEEECTT-SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH------HHHHTTCCCS--TTCEEEEECCSHHHHHH
T ss_pred CEEEEECCC-cCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCc------CcccCCcccC--CCCEEEEECcCHHHHHH
Confidence 799999999 99999999998854 55555677777777732 1001112234 36899999999999999
Q ss_pred HHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHh
Q 012596 143 AAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGI 219 (460)
Q Consensus 143 A~~La~~G~~~~-V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i 219 (460)
|.+|...| ++ |++|+|++...+...+.| +....+++++++.+|+|++++|.+ .++.++ ++.
T Consensus 180 A~~l~~~G--~~~V~~~d~~~~~~~~~~~~g--------------~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 243 (364)
T 2j6i_A 180 LERLVPFN--PKELLYYDYQALPKDAEEKVG--------------ARRVENIEELVAQADIVTVNAPLHAGTKGLINKEL 243 (364)
T ss_dssp HHHHGGGC--CSEEEEECSSCCCHHHHHHTT--------------EEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHH
T ss_pred HHHHHhCC--CcEEEEECCCccchhHHHhcC--------------cEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHH
Confidence 99999888 87 999998865444443333 233457889899999999999975 455655 346
Q ss_pred hhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 220 SDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 220 ~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
.+.+++++++|++++|-..++ ..+.+.+.+
T Consensus 244 l~~mk~ga~lIn~arG~~vd~-~aL~~aL~~ 273 (364)
T 2j6i_A 244 LSKFKKGAWLVNTARGAICVA-EDVAAALES 273 (364)
T ss_dssp HTTSCTTEEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HhhCCCCCEEEECCCCchhCH-HHHHHHHHc
Confidence 677899999999998855543 234444443
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-13 Score=128.82 Aligned_cols=151 Identities=11% Similarity=0.121 Sum_probs=91.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V-~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+|||+|||+|+||..++..|+++ ++| .+|+|++++++.+.+... . .+++++++++++|+||+
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~---~~v~~v~~~~~~~~~~~~~~~g-------------~-~~~~~~~~~~~~DvVil 64 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR---YEIGYILSRSIDRARNLAEVYG-------------G-KAATLEKHPELNGVVFV 64 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-------CCCEECSSHHHHHHHHHHTC-------------C-CCCSSCCCCC---CEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHc---CcEEEEEeCCHHHHHHHHHHcC-------------C-ccCCHHHHHhcCCEEEE
Confidence 47999999999999999999875 578 599999998888765310 1 23456666788999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d 285 (460)
|||.+...+++.++. .++++||+++.++..+. +.+......++...+.|+........+.+ +.+.+ +
T Consensus 65 av~~~~~~~v~~~l~---~~~~ivi~~s~~~~~~~-------l~~~~~~~~~p~~~~~g~~~~~~~~~~~~--~~~~~-~ 131 (276)
T 2i76_A 65 IVPDRYIKTVANHLN---LGDAVLVHCSGFLSSEI-------FKKSGRASIHPNFSFSSLEKALEMKDQIV--FGLEG-D 131 (276)
T ss_dssp CSCTTTHHHHHTTTC---CSSCCEEECCSSSCGGG-------GCSSSEEEEEECSCC--CTTGGGCGGGCC--EEECC-C
T ss_pred eCChHHHHHHHHHhc---cCCCEEEECCCCCcHHH-------HHHhhccccchhhhcCCCchhHHHhCCCe--EEEEe-C
Confidence 999999988888775 57889999887655432 11111100011112333222211122322 23443 4
Q ss_pred HHHHHHHHHHHhcCCceEEEcC
Q 012596 286 RKLANAVQQLLASKHLRISTSS 307 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~ 307 (460)
.+.++.++++|+..|.+++..+
T Consensus 132 ~~~~~~~~~l~~~lG~~~~~v~ 153 (276)
T 2i76_A 132 ERGLPIVKKIAEEISGKYFVIP 153 (276)
T ss_dssp TTTHHHHHHHHHHHCSCEEECC
T ss_pred hHHHHHHHHHHHHhCCCEEEEC
Confidence 5558899999998886665554
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.4e-13 Score=132.78 Aligned_cols=156 Identities=10% Similarity=0.144 Sum_probs=114.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|+|. |.+.++||+..... +.....++.++++.|+.. .+ .+.++ ..++|||||+|.||.
T Consensus 110 ~~gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-----~~---~~~~l--~g~tvgIIGlG~IG~ 178 (335)
T 2g76_A 110 RKGILVMNTPN-GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK-----KF---MGTEL--NGKTLGILGLGRIGR 178 (335)
T ss_dssp HHTCEEECCSS-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTG-----GG---CBCCC--TTCEEEEECCSHHHH
T ss_pred hCCeEEEECCC-ccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCcc-----CC---CCcCC--CcCEEEEEeECHHHH
Confidence 34689999998 99999999998744 555566777888877421 11 12234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|.+|...| ++|++|+|+.... ...+.|. .. .+++++++++|+|++++|.+ .++.++ ++
T Consensus 179 ~vA~~l~~~G--~~V~~~d~~~~~~-~~~~~g~--------------~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 240 (335)
T 2g76_A 179 EVATRMQSFG--MKTIGYDPIISPE-VSASFGV--------------QQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDN 240 (335)
T ss_dssp HHHHHHHTTT--CEEEEECSSSCHH-HHHHTTC--------------EE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCcchh-hhhhcCc--------------ee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHH
Confidence 9999999877 9999999986542 3333331 22 37888899999999999975 466666 45
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
..+.+++++++|+++.|-..++ ..+.+.+.+
T Consensus 241 ~l~~mk~gailIN~arg~vvd~-~aL~~aL~~ 271 (335)
T 2g76_A 241 TFAQCKKGVRVVNCARGGIVDE-GALLRALQS 271 (335)
T ss_dssp HHTTSCTTEEEEECSCTTSBCH-HHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCccccCH-HHHHHHHHh
Confidence 6778899999999998765543 234444443
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-13 Score=134.13 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=110.4
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhh-hhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIV-KVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
+.++.|+|+|+ |.++++||+..... +.....++.++ ++.| +|.... .+.++ ..++|||||+|.||
T Consensus 91 ~~gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~----~w~~~~---~~~~l--~gktvgIiGlG~IG 160 (343)
T 2yq5_A 91 KYNLLVTNVPV-YSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDF----TWPSNL---ISNEI--YNLTVGLIGVGHIG 160 (343)
T ss_dssp C--CEEECCSC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCC----CCCGGG---CBCCG--GGSEEEEECCSHHH
T ss_pred hCCEEEEECCC-CCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCc----ccccCC---Ccccc--CCCeEEEEecCHHH
Confidence 45899999998 99999999998855 45555666666 6655 353221 23345 36899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~ 217 (460)
..+|.+|...| ++|++|+|+++.. . +. .+.. .++++++++||+|++++|.+ .+..++ .
T Consensus 161 ~~vA~~l~~~G--~~V~~~d~~~~~~--~-~~--------------~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~ 220 (343)
T 2yq5_A 161 SAVAEIFSAMG--AKVIAYDVAYNPE--F-EP--------------FLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGE 220 (343)
T ss_dssp HHHHHHHHHTT--CEEEEECSSCCGG--G-TT--------------TCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred HHHHHHHhhCC--CEEEEECCChhhh--h-hc--------------cccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhH
Confidence 99999999888 9999999986420 0 10 1122 27889999999999999953 455544 3
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
+....+++++++|++++|-..++ +.+.+.+.+
T Consensus 221 ~~l~~mk~gailIN~aRg~~vd~-~aL~~aL~~ 252 (343)
T 2yq5_A 221 KQLKEMKKSAYLINCARGELVDT-GALIKALQD 252 (343)
T ss_dssp HHHHHSCTTCEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHHhhCCCCcEEEECCCChhhhH-HHHHHHHHc
Confidence 45677899999999999876654 334444443
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-13 Score=139.01 Aligned_cols=159 Identities=18% Similarity=0.272 Sum_probs=113.6
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeec-cccchhccCCCeEEEECcchHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRS-KAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~kI~IIGaG~mG 139 (460)
+.++.|+|+|+ |...++||+..... +.....++.++.+.|++ |...+.. +.-.++ ..++|+|||+|.||
T Consensus 85 ~~gi~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~~~~~~~~~l--~g~~vgIIG~G~iG 158 (333)
T 2d0i_A 85 KRGIYVTKVSG-LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWES---HAKIWTGFKRIESL--YGKKVGILGMGAIG 158 (333)
T ss_dssp HTTCEEECCCH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCC---HHHHHTTSCCCCCS--TTCEEEEECCSHHH
T ss_pred hCCcEEEeCCC-cChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCc---CcccccCCcccCCC--CcCEEEEEccCHHH
Confidence 45689999999 99999999998844 55556677788887742 2110111 000234 36899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE- 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~- 217 (460)
..+|..|...| ++|++|+|+++. +...+.| +.. .++++++++||+|++++|.+ .+..++.
T Consensus 159 ~~vA~~l~~~G--~~V~~~d~~~~~-~~~~~~g--------------~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~ 220 (333)
T 2d0i_A 159 KAIARRLIPFG--VKLYYWSRHRKV-NVEKELK--------------ARY-MDIDELLEKSDIVILALPLTRDTYHIINE 220 (333)
T ss_dssp HHHHHHHGGGT--CEEEEECSSCCH-HHHHHHT--------------EEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCH
T ss_pred HHHHHHHHHCC--CEEEEECCCcch-hhhhhcC--------------cee-cCHHHHHhhCCEEEEcCCCChHHHHHhCH
Confidence 99999999888 899999998765 3333333 233 37888889999999999976 5666653
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
++.+.++++ ++|++++|...++ ..+.+.+.
T Consensus 221 ~~~~~mk~g-ilin~srg~~vd~-~aL~~aL~ 250 (333)
T 2d0i_A 221 ERVKKLEGK-YLVNIGRGALVDE-KAVTEAIK 250 (333)
T ss_dssp HHHHHTBTC-EEEECSCGGGBCH-HHHHHHHH
T ss_pred HHHhhCCCC-EEEECCCCcccCH-HHHHHHHH
Confidence 456678889 9999999876653 23334443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-13 Score=135.34 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=112.9
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|+ |.++++||+..... +.....++.++.+.|. |. ...+.++ ..++|||||+|.||.
T Consensus 91 ~~gi~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~----~~----~~~~~~l--~g~~vgIiG~G~IG~ 159 (333)
T 1j4a_A 91 ELGFQITNVPV-YSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR----WA----PTIGREV--RDQVVGVVGTGHIGQ 159 (333)
T ss_dssp HTTCEEECCCC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC----CT----TCCBCCG--GGSEEEEECCSHHHH
T ss_pred hCCCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc----cC----CcccccC--CCCEEEEEccCHHHH
Confidence 45789999999 99999999998855 5555667777777762 32 1223334 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|.+|...| ++|++|+|+++.. + +.+. ...++++++++.+|+|++++|.+ .++.++ +.
T Consensus 160 ~~A~~l~~~G--~~V~~~d~~~~~~--~-~~~~--------------~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~ 220 (333)
T 1j4a_A 160 VFMQIMEGFG--AKVITYDIFRNPE--L-EKKG--------------YYVDSLDDLYKQADVISLHVPDVPANVHMINDE 220 (333)
T ss_dssp HHHHHHHHTT--CEEEEECSSCCHH--H-HHTT--------------CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHH
T ss_pred HHHHHHHHCC--CEEEEECCCcchh--H-HhhC--------------eecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHH
Confidence 9999999888 8999999987643 2 2211 11236888889999999999964 355555 34
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
..+.+++++++|+++.|-..++ ..+.+.+.+
T Consensus 221 ~l~~mk~ga~lIn~arg~~vd~-~aL~~aL~~ 251 (333)
T 1j4a_A 221 SIAKMKQDVVIVNVSRGPLVDT-DAVIRGLDS 251 (333)
T ss_dssp HHHHSCTTEEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCCcccCH-HHHHHHHHh
Confidence 5677889999999998765543 344444443
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-13 Score=133.61 Aligned_cols=144 Identities=10% Similarity=0.090 Sum_probs=108.2
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|. |...++||+..... +.....++.++++.|+. + .+.++ ..++|||||+|.||.
T Consensus 89 ~~gi~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-------~---~~~~l--~g~~vgIIG~G~IG~ 155 (313)
T 2ekl_A 89 KRNIKVVYAPG-ASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK-------I---EGLEL--AGKTIGIVGFGRIGT 155 (313)
T ss_dssp HTTCEEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC-------C---CCCCC--TTCEEEEESCSHHHH
T ss_pred hCCeEEEeCCC-CCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC-------C---CCCCC--CCCEEEEEeeCHHHH
Confidence 45799999999 99999999998854 55555677777776631 1 12234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl-~~ 218 (460)
.+|.+|...| ++|++|+|+++... ..+.|. .. .+++++++.+|+|++++|.+. +..++ ++
T Consensus 156 ~~A~~l~~~G--~~V~~~d~~~~~~~-~~~~g~--------------~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~ 217 (313)
T 2ekl_A 156 KVGIIANAMG--MKVLAYDILDIREK-AEKINA--------------KA-VSLEELLKNSDVISLHVTVSKDAKPIIDYP 217 (313)
T ss_dssp HHHHHHHHTT--CEEEEECSSCCHHH-HHHTTC--------------EE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCcchhH-HHhcCc--------------ee-cCHHHHHhhCCEEEEeccCChHHHHhhCHH
Confidence 9999999888 99999999876542 333331 22 378888899999999999644 55555 44
Q ss_pred hhhcCCCCCeEEEeccCCccc
Q 012596 219 ISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
..+.+++++++|+++.|-..+
T Consensus 218 ~l~~mk~ga~lIn~arg~~vd 238 (313)
T 2ekl_A 218 QFELMKDNVIIVNTSRAVAVN 238 (313)
T ss_dssp HHHHSCTTEEEEESSCGGGBC
T ss_pred HHhcCCCCCEEEECCCCcccC
Confidence 566788999999999875544
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-13 Score=135.73 Aligned_cols=152 Identities=11% Similarity=0.135 Sum_probs=111.0
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhh---hhhcccceeeeeccccchhccCCCeEEEECcch
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVA---WEKLVRWSRTWRSKAKTDILERTNKVVVLGGGS 137 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~ 137 (460)
+.++.|+|.|+ |...++||+..... +.....++.++.+. |++. |... ...+.++ ..++|||||+|.
T Consensus 101 ~~gI~v~n~p~-~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~--~~~~--~~~~~~l--~g~~vgIIG~G~ 173 (348)
T 2w2k_A 101 ERGVAFANSRG-AGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRV--HLEI--GKSAHNP--RGHVLGAVGLGA 173 (348)
T ss_dssp HTTCEEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHH--HHHH--HTTCCCS--TTCEEEEECCSH
T ss_pred hCCcEEEECCC-CCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccc--cccc--cccCcCC--CCCEEEEEEECH
Confidence 46799999999 99999999988744 55556677788887 7320 0000 0112234 368999999999
Q ss_pred HHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHH
Q 012596 138 FGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSF 215 (460)
Q Consensus 138 mG~~~A~~La-~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~v 215 (460)
||..+|..|. ..| ++|++|||+++..+...+.| +...+++++++++||+|++++|.+ .+..+
T Consensus 174 IG~~vA~~l~~~~G--~~V~~~d~~~~~~~~~~~~g--------------~~~~~~l~ell~~aDvVil~vp~~~~t~~l 237 (348)
T 2w2k_A 174 IQKEIARKAVHGLG--MKLVYYDVAPADAETEKALG--------------AERVDSLEELARRSDCVSVSVPYMKLTHHL 237 (348)
T ss_dssp HHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHT--------------CEECSSHHHHHHHCSEEEECCCCSGGGTTC
T ss_pred HHHHHHHHHHHhcC--CEEEEECCCCcchhhHhhcC--------------cEEeCCHHHHhccCCEEEEeCCCChHHHHH
Confidence 9999999999 888 89999999875544443333 233357888889999999999975 36665
Q ss_pred H-HHhhhcCCCCCeEEEeccCCccc
Q 012596 216 L-EGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 216 l-~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+ .++.+.+++++++|+++.|-..+
T Consensus 238 i~~~~l~~mk~gailin~srg~~vd 262 (348)
T 2w2k_A 238 IDEAFFAAMKPGSRIVNTARGPVIS 262 (348)
T ss_dssp BCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred hhHHHHhcCCCCCEEEECCCCchhC
Confidence 5 35667788999999999874443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-13 Score=135.35 Aligned_cols=162 Identities=10% Similarity=0.090 Sum_probs=113.4
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeec-ccc-chhccCCCeEEEECcchH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRS-KAK-TDILERTNKVVVLGGGSF 138 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~kI~IIGaG~m 138 (460)
+.++.|+|+|+ |.++++||+..... +.....++.++.+.|... + ..+.. ..+ .++ ..++|||||+|.|
T Consensus 106 ~~gI~V~n~~~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~--~-~~~~~~~~~~~~l--~g~tvGIIG~G~I 179 (347)
T 1mx3_A 106 DLGIAVCNVPA-ASVEETADSTLCHILNLYRRATWLHQALREGTRVQS--V-EQIREVASGAARI--RGETLGIIGLGRV 179 (347)
T ss_dssp HTTCEEECCCS-TTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCS--H-HHHHHHTTTCCCC--TTCEEEEECCSHH
T ss_pred hCCceEEECCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccc--c-ccccccccCccCC--CCCEEEEEeECHH
Confidence 35789999999 99999999998854 445556677777777320 0 00000 001 233 3689999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-
Q 012596 139 GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL- 216 (460)
Q Consensus 139 G~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl- 216 (460)
|..+|.+|...| ++|++|+++.+... ..+.| +....+++++++.+|+|++++|.+ .++.++
T Consensus 180 G~~vA~~l~~~G--~~V~~~d~~~~~~~-~~~~g--------------~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 242 (347)
T 1mx3_A 180 GQAVALRAKAFG--FNVLFYDPYLSDGV-ERALG--------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 242 (347)
T ss_dssp HHHHHHHHHTTT--CEEEEECTTSCTTH-HHHHT--------------CEECSSHHHHHHHCSEEEECCCCCTTCTTSBS
T ss_pred HHHHHHHHHHCC--CEEEEECCCcchhh-HhhcC--------------CeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH
Confidence 999999999888 89999998764311 12222 233347888899999999999964 466665
Q ss_pred HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 217 EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 217 ~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
++..+.+++++++|++++|-..++ +.+.+.+.+
T Consensus 243 ~~~l~~mk~gailIN~arg~~vd~-~aL~~aL~~ 275 (347)
T 1mx3_A 243 DFTVKQMRQGAFLVNTARGGLVDE-KALAQALKE 275 (347)
T ss_dssp HHHHTTSCTTEEEEECSCTTSBCH-HHHHHHHHH
T ss_pred HHHHhcCCCCCEEEECCCChHHhH-HHHHHHHHh
Confidence 456678899999999999865543 344455544
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-13 Score=131.62 Aligned_cols=156 Identities=14% Similarity=0.202 Sum_probs=112.8
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|. |..+++||+..... +.....++.++++.|++ .. ..+.++ ..++|+|||+|.||.
T Consensus 87 ~~gi~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~------~~--~~~~~l--~g~~vgIiG~G~IG~ 155 (307)
T 1wwk_A 87 EKGIEVVNAPA-ASSRSVAELAVGLMFSVARKIAFADRKMREGVWAK------KE--AMGIEL--EGKTIGIIGFGRIGY 155 (307)
T ss_dssp HHTCEEECCGG-GGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCT------TT--CCBCCC--TTCEEEEECCSHHHH
T ss_pred hCCcEEEECCC-CChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc------cC--cCCccc--CCceEEEEccCHHHH
Confidence 35689999999 99999999998854 44555667777776642 10 112234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl-~~ 218 (460)
.+|..|...| ++|++|+|+++. +...+.|. .. .+++++++++|+|++++|.+. +..++ ++
T Consensus 156 ~~A~~l~~~G--~~V~~~d~~~~~-~~~~~~g~--------------~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~ 217 (307)
T 1wwk_A 156 QVAKIANALG--MNILLYDPYPNE-ERAKEVNG--------------KF-VDLETLLKESDVVTIHVPLVESTYHLINEE 217 (307)
T ss_dssp HHHHHHHHTT--CEEEEECSSCCH-HHHHHTTC--------------EE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCCCh-hhHhhcCc--------------cc-cCHHHHHhhCCEEEEecCCChHHhhhcCHH
Confidence 9999999888 999999998765 33333332 22 268888899999999999654 55555 34
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
..+.+++++++|+++.|-..+. ..+.+.+.+
T Consensus 218 ~l~~mk~ga~lin~arg~~vd~-~aL~~aL~~ 248 (307)
T 1wwk_A 218 RLKLMKKTAILINTSRGPVVDT-NALVKALKE 248 (307)
T ss_dssp HHHHSCTTCEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHhcCCCCeEEEECCCCcccCH-HHHHHHHHh
Confidence 5677889999999998754442 234444543
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-13 Score=136.64 Aligned_cols=154 Identities=12% Similarity=0.224 Sum_probs=109.9
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcc-cchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRD-RRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
+.++.|+|.|. +..+++||+..... +..... +|.++.+.|+. .. .+.++ ..++|||||+|.||
T Consensus 82 ~~gI~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~------~~---~~~~l--~gktvGIiGlG~IG 149 (324)
T 3evt_A 82 AAGVVVANTSG-IHADAISESVLAAMLSVVRGYHAAWLNQRGARQWAL------PM---TTSTL--TGQQLLIYGTGQIG 149 (324)
T ss_dssp HTTCEEECCTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSC------SS---CCCCS--TTCEEEEECCSHHH
T ss_pred HCCcEEEECCC-cCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCccc------CC---CCccc--cCCeEEEECcCHHH
Confidence 35799999998 99999999998854 333334 55566665533 21 12334 36899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~ 217 (460)
..+|.+|...| ++|++|+|+++..+ +. .......++++++++||+|++++|.+ .+..++ .
T Consensus 150 ~~vA~~l~~~G--~~V~~~dr~~~~~~-----~~-----------~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~ 211 (324)
T 3evt_A 150 QSLAAKASALG--MHVIGVNTTGHPAD-----HF-----------HETVAFTATADALATANFIVNALPLTPTTHHLFST 211 (324)
T ss_dssp HHHHHHHHHTT--CEEEEEESSCCCCT-----TC-----------SEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSH
T ss_pred HHHHHHHHhCC--CEEEEECCCcchhH-----hH-----------hhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCH
Confidence 99999999888 99999999863211 00 01122357788899999999999954 556555 4
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
+....+++++++|++++|-..++ ..+.+.+.
T Consensus 212 ~~l~~mk~gailIN~aRG~~vd~-~aL~~aL~ 242 (324)
T 3evt_A 212 ELFQQTKQQPMLINIGRGPAVDT-TALMTALD 242 (324)
T ss_dssp HHHHTCCSCCEEEECSCGGGBCH-HHHHHHHH
T ss_pred HHHhcCCCCCEEEEcCCChhhhH-HHHHHHHH
Confidence 56677899999999999876653 23334443
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=131.85 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=110.8
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|+ |..+++||+..... +.....++.++.+.| .|.... ...+.++ ..++|||||+|.||.
T Consensus 118 ~~GI~V~n~~~-~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~----~w~~~~-~~~~~~l--~gktvGIIGlG~IG~ 189 (365)
T 4hy3_A 118 QRGIHVVTTGQ-VFAEPVAEIGLGFALALARGIVDADIAFQEGTE----LWGGEG-NASARLI--AGSEIGIVGFGDLGK 189 (365)
T ss_dssp HSCCEEEECGG-GGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCC----CCSSSS-TTSCCCS--SSSEEEEECCSHHHH
T ss_pred cCCeEEEeCCC-ccchHHHHHHHHHHHHHHhchhHHHHHHHcCCc----cccccc-ccccccc--CCCEEEEecCCcccH
Confidence 35799999998 99999999998844 666777888888875 143211 1123344 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|.+|...| ++|++|+++... +...+.|. . ..+++++++.||+|++++|.+ .++.++ .+
T Consensus 190 ~vA~~l~~fG--~~V~~~d~~~~~-~~~~~~g~--------------~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 251 (365)
T 4hy3_A 190 ALRRVLSGFR--ARIRVFDPWLPR-SMLEENGV--------------E-PASLEDVLTKSDFIFVVAAVTSENKRFLGAE 251 (365)
T ss_dssp HHHHHHTTSC--CEEEEECSSSCH-HHHHHTTC--------------E-ECCHHHHHHSCSEEEECSCSSCC---CCCHH
T ss_pred HHHHhhhhCC--CEEEEECCCCCH-HHHhhcCe--------------e-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHH
Confidence 9999998777 999999998532 33333331 2 247889999999999999964 566665 45
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 252 ~l~~mk~gailIN~aRG~~vde 273 (365)
T 4hy3_A 252 AFSSMRRGAAFILLSRADVVDF 273 (365)
T ss_dssp HHHTSCTTCEEEECSCGGGSCH
T ss_pred HHhcCCCCcEEEECcCCchhCH
Confidence 6778899999999999866654
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-12 Score=134.30 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=112.4
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|. +..+++||+..... +.....++.++++.|++ .. ..+.++ ..++|||||+|.||.
T Consensus 90 ~~GI~V~n~p~-~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~------~~--~~~~el--~gktlGiIGlG~IG~ 158 (404)
T 1sc6_A 90 KRGIPVFNAPF-SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNK------LA--AGSFEA--RGKKLGIIGYGHIGT 158 (404)
T ss_dssp HTTCCEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------------CCCS--TTCEEEEECCSHHHH
T ss_pred hCCCEEEecCc-ccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccc------cC--CCcccc--CCCEEEEEeECHHHH
Confidence 45689999999 99999999998844 55556677778887743 11 112334 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|.++...| ++|++|||++.. ..+ .+....+++++++.||+|++++|.+ .++.++ ++
T Consensus 159 ~vA~~l~~~G--~~V~~~d~~~~~-----~~~-------------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 218 (404)
T 1sc6_A 159 QLGILAESLG--MYVYFYDIENKL-----PLG-------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK 218 (404)
T ss_dssp HHHHHHHHTT--CEEEEECSSCCC-----CCT-------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred HHHHHHHHCC--CEEEEEcCCchh-----ccC-------------CceecCCHHHHHhcCCEEEEccCCChHHHHHhhHH
Confidence 9999999888 999999997531 000 1334458899999999999999965 466655 44
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
....+++++++|++++|-..++ ..+.+.+.
T Consensus 219 ~l~~mk~ga~lIN~aRg~~vd~-~aL~~aL~ 248 (404)
T 1sc6_A 219 EISLMKPGSLLINASRGTVVDI-PALADALA 248 (404)
T ss_dssp HHHHSCTTEEEEECSCSSSBCH-HHHHHHHH
T ss_pred HHhhcCCCeEEEECCCChHHhH-HHHHHHHH
Confidence 6677899999999999866553 23444443
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-12 Score=130.72 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=111.4
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|+ |.++++||+..... +.....++.++++.|. |... ..+.++ ..++|||||+|.||.
T Consensus 89 ~~gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~----~~~~---~~~~~l--~g~~vgIiG~G~IG~ 158 (333)
T 1dxy_A 89 QYGIRLSNVPA-YSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE----KAGT---FIGKEL--GQQTVGVMGTGHIGQ 158 (333)
T ss_dssp HTTCEEECCTT-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH----HHTC---CCCCCG--GGSEEEEECCSHHHH
T ss_pred hCCCEEEeCCC-CCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc----cccC---CCccCC--CCCEEEEECcCHHHH
Confidence 45789999999 99999999998854 5555667777888772 4111 122334 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl-~~ 218 (460)
.+|.+|...| ++|++|+|+.+.. + +. .+.. .+++++++.+|+|++++|.+. +..++ ++
T Consensus 159 ~~A~~l~~~G--~~V~~~d~~~~~~--~-~~--------------~~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~ 218 (333)
T 1dxy_A 159 VAIKLFKGFG--AKVIAYDPYPMKG--D-HP--------------DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEA 218 (333)
T ss_dssp HHHHHHHHTT--CEEEEECSSCCSS--C-CT--------------TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCcchh--h-Hh--------------cccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHH
Confidence 9999999888 9999999986321 0 00 0122 378888999999999999653 55555 45
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
..+.+++++++|+++.|-..++ ..+.+.+.
T Consensus 219 ~l~~mk~ga~lIn~srg~~vd~-~aL~~aL~ 248 (333)
T 1dxy_A 219 AFNLMKPGAIVINTARPNLIDT-QAMLSNLK 248 (333)
T ss_dssp HHHHSCTTEEEEECSCTTSBCH-HHHHHHHH
T ss_pred HHhhCCCCcEEEECCCCcccCH-HHHHHHHH
Confidence 6677899999999998865543 23334443
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.4e-13 Score=139.98 Aligned_cols=155 Identities=13% Similarity=0.179 Sum_probs=115.0
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|.|. +...++||+..... +.....++.++.+.|++. .+. +.++ ..++|+|||+|.||.
T Consensus 87 ~~gi~v~n~p~-~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~-----~~~---~~~l--~g~~vgIIG~G~IG~ 155 (529)
T 1ygy_A 87 ARGVLVVNAPT-SNIHSAAEHALALLLAASRQIPAADASLREHTWKRS-----SFS---GTEI--FGKTVGVVGLGRIGQ 155 (529)
T ss_dssp HTTCEEECCTT-SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGG-----GCC---BCCC--TTCEEEEECCSHHHH
T ss_pred hCCeEEEECCC-cchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCccc-----CcC---cccc--CCCEEEEEeeCHHHH
Confidence 45789999999 99999999998844 555566777777777431 111 2234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHHH-
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEG- 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~~- 218 (460)
.+|.+|...| ++|++||++... +...+.|. ... ++++++++||+|++|+|.+ .+..++.+
T Consensus 156 ~vA~~l~~~G--~~V~~~d~~~~~-~~a~~~g~--------------~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~ 217 (529)
T 1ygy_A 156 LVAQRIAAFG--AYVVAYDPYVSP-ARAAQLGI--------------ELL-SLDDLLARADFISVHLPKTPETAGLIDKE 217 (529)
T ss_dssp HHHHHHHTTT--CEEEEECTTSCH-HHHHHHTC--------------EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHH
T ss_pred HHHHHHHhCC--CEEEEECCCCCh-hHHHhcCc--------------EEc-CHHHHHhcCCEEEECCCCchHHHHHhCHH
Confidence 9999999888 899999997642 33333342 223 6888889999999999977 67777654
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
+.+.+++++++|++++|-..+. ..+.+.+.
T Consensus 218 ~~~~~k~g~ilin~arg~iv~~-~aL~~al~ 247 (529)
T 1ygy_A 218 ALAKTKPGVIIVNAARGGLVDE-AALADAIT 247 (529)
T ss_dssp HHTTSCTTEEEEECSCTTSBCH-HHHHHHHH
T ss_pred HHhCCCCCCEEEECCCCchhhH-HHHHHHHH
Confidence 6778899999999998866553 23334443
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-12 Score=133.29 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=110.9
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|. |..+++||+..... +.....++.++++.|++ .. ..+.++ ..++|||||+|.||.
T Consensus 101 ~~GI~V~n~p~-~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~------~~--~~~~el--~gktvGIIGlG~IG~ 169 (416)
T 3k5p_A 101 KRGIPVFNAPF-SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEK------TA--IGSREV--RGKTLGIVGYGNIGS 169 (416)
T ss_dssp HTTCCEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC------CC--TTCCCS--TTCEEEEECCSHHHH
T ss_pred hcCcEEEeCCC-cccHHHHHHHHHHHHHHhcccHHHHHhhhcccccc------cC--CCCccC--CCCEEEEEeeCHHHH
Confidence 35789999998 99999999998844 55556677777777744 11 112334 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|.++...| ++|++||+++... . .......+++++++.||+|++++|.+ .++.++ .+
T Consensus 170 ~vA~~l~~~G--~~V~~yd~~~~~~----~--------------~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~ 229 (416)
T 3k5p_A 170 QVGNLAESLG--MTVRYYDTSDKLQ----Y--------------GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEA 229 (416)
T ss_dssp HHHHHHHHTT--CEEEEECTTCCCC----B--------------TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHH
T ss_pred HHHHHHHHCC--CEEEEECCcchhc----c--------------cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHH
Confidence 9999999888 9999999874210 0 01234468999999999999999964 455555 45
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
....+++++++|++++|-..++ ..+.+.+.
T Consensus 230 ~l~~mk~gailIN~aRG~vvd~-~aL~~aL~ 259 (416)
T 3k5p_A 230 KLRKMKKGAFLINNARGSDVDL-EALAKVLQ 259 (416)
T ss_dssp HHHHSCTTEEEEECSCTTSBCH-HHHHHHHH
T ss_pred HHhhCCCCcEEEECCCChhhhH-HHHHHHHH
Confidence 5677899999999999876654 23344443
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=130.41 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=110.8
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|+ |.++++||+..... +.....++.++.+.|. |. ....+.++ ..++|||||+|.||.
T Consensus 90 ~~gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~----~~---~~~~~~~l--~g~~vgIiG~G~IG~ 159 (331)
T 1xdw_A 90 ELGFPMAFVPR-YSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK----VD---AFMFSKEV--RNCTVGVVGLGRIGR 159 (331)
T ss_dssp HTTCCEECCCC-CCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC----CC---STTCCCCG--GGSEEEEECCSHHHH
T ss_pred hCCcEEEeCCC-CCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc----cc---cCcCccCC--CCCEEEEECcCHHHH
Confidence 35789999999 99999999998854 4555667777777662 31 11122334 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|.+|...| ++|++|+|+++.. + +. .+. ..+++++++.+|+|++++|.+ .++.++ ++
T Consensus 160 ~~A~~l~~~G--~~V~~~d~~~~~~--~-~~--------------~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~~ 219 (331)
T 1xdw_A 160 VAAQIFHGMG--ATVIGEDVFEIKG--I-ED--------------YCT-QVSLDEVLEKSDIITIHAPYIKENGAVVTRD 219 (331)
T ss_dssp HHHHHHHHTT--CEEEEECSSCCCS--C-TT--------------TCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCccHH--H-Hh--------------ccc-cCCHHHHHhhCCEEEEecCCchHHHHHhCHH
Confidence 9999999888 9999999976321 0 00 012 237888889999999999964 455554 34
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
..+.+++++++|++++|-..++ ..+.+.+.+
T Consensus 220 ~l~~mk~ga~lin~srg~~vd~-~aL~~aL~~ 250 (331)
T 1xdw_A 220 FLKKMKDGAILVNCARGQLVDT-EAVIEAVES 250 (331)
T ss_dssp HHHTSCTTEEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCcccccH-HHHHHHHHh
Confidence 5667889999999998865543 344444443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=130.29 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=108.1
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|+ |...++||+..... +.....++.++++.|+. |.+.. ..+.++ ..++|||||+|.||.
T Consensus 86 ~~gi~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~--~~~~~l--~g~~vgIIG~G~IG~ 157 (311)
T 2cuk_A 86 ERGIRVTHTPG-VLTEATADLTLALLLAVARRVVEGAAYARDGLWKA---WHPEL--LLGLDL--QGLTLGLVGMGRIGQ 157 (311)
T ss_dssp TTTCEEECCCS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---CCTTT--TCBCCC--TTCEEEEECCSHHHH
T ss_pred hCCcEEEECCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCc---ccccc--ccCcCC--CCCEEEEEEECHHHH
Confidence 56799999999 99999999998854 55556677788887742 22110 112233 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-H
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-G 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~-~ 218 (460)
.+|.+|...| ++|++|+|+.+..+ +. ..+++++++.+|+|++++|.+ .+..++. +
T Consensus 158 ~~A~~l~~~G--~~V~~~d~~~~~~~--------------------~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~ 214 (311)
T 2cuk_A 158 AVAKRALAFG--MRVVYHARTPKPLP--------------------YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRE 214 (311)
T ss_dssp HHHHHHHHTT--CEEEEECSSCCSSS--------------------SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCCcccc--------------------cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHH
Confidence 9999999888 89999999864211 01 236888889999999999976 4666553 4
Q ss_pred hhhcCCCCCeEEEeccCCccc
Q 012596 219 ISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
..+.+++++++|+++.|-..+
T Consensus 215 ~l~~mk~ga~lin~srg~~vd 235 (311)
T 2cuk_A 215 RLFAMKRGAILLNTARGALVD 235 (311)
T ss_dssp HHTTSCTTCEEEECSCGGGBC
T ss_pred HHhhCCCCcEEEECCCCCccC
Confidence 566789999999999875544
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-12 Score=124.97 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=109.9
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.+..++|.|+ +...++||+..... +.....++.++++.|+. ... ..++ ..++|||||+|.||.
T Consensus 70 ~~gi~v~~~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~------~~~---~~~l--~g~~vgIIG~G~IG~ 137 (303)
T 1qp8_A 70 PPHVTVAGNAG-SNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGR------DVE---IPLI--QGEKVAVLGLGEIGT 137 (303)
T ss_dssp CTTSCEECCCS-SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC------CSC---CCCC--TTCEEEEESCSTHHH
T ss_pred hcCCEEEECCC-CCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC------CCC---CCCC--CCCEEEEEccCHHHH
Confidence 45789999998 66669999998844 55556677777777732 111 1123 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-H
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-G 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~-~ 218 (460)
.+|.+|...| ++|++|+|+++ +. +. ....+++++++.||+|++++|.. .+..++. +
T Consensus 138 ~~A~~l~~~G--~~V~~~dr~~~--~~----~~--------------~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~ 195 (303)
T 1qp8_A 138 RVGKILAALG--AQVRGFSRTPK--EG----PW--------------RFTNSLEEALREARAAVCALPLNKHTRGLVKYQ 195 (303)
T ss_dssp HHHHHHHHTT--CEEEEECSSCC--CS----SS--------------CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHH
T ss_pred HHHHHHHHCC--CEEEEECCCcc--cc----Cc--------------ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHH
Confidence 9999999888 89999999864 10 11 11236788899999999999976 4666663 5
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
..+.+++++++|++++|-..++ ..+.+.+.+
T Consensus 196 ~l~~mk~gailin~srg~~vd~-~aL~~aL~~ 226 (303)
T 1qp8_A 196 HLALMAEDAVFVNVGRAEVLDR-DGVLRILKE 226 (303)
T ss_dssp HHTTSCTTCEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HHhhCCCCCEEEECCCCcccCH-HHHHHHHHh
Confidence 6778999999999998755443 334444543
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=116.36 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=107.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~-~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.|||+|||+|.||.++|..|.+.| ++|++|+|+++. .+...+.| +.++ +++++++++|+||
T Consensus 15 ~~~~I~IIG~G~mG~alA~~L~~~G--~~V~~~~~~~~~~~~~a~~~G--------------~~~~-~~~e~~~~aDvVi 77 (338)
T 1np3_A 15 QGKKVAIIGYGSQGHAHACNLKDSG--VDVTVGLRSGSATVAKAEAHG--------------LKVA-DVKTAVAAADVVM 77 (338)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHTT--------------CEEE-CHHHHHHTCSEEE
T ss_pred cCCEEEEECchHHHHHHHHHHHHCc--CEEEEEECChHHHHHHHHHCC--------------CEEc-cHHHHHhcCCEEE
Confidence 3579999999999999999999999 899999998765 44444443 2334 7778889999999
Q ss_pred EccchhcHHHHHH-HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEE--EEECcccHH-HHhc---cCCe
Q 012596 205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFAL-ELMN---KLPT 277 (460)
Q Consensus 205 laVp~~~~~~vl~-~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~--v~~gP~~a~-e~~~---g~~~ 277 (460)
+|||.....++++ ++.+.++++++|+++ .|+.. .+..........+. .-.||.++. ++.. |.+.
T Consensus 78 lavp~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~~--------~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ 148 (338)
T 1np3_A 78 ILTPDEFQGRLYKEEIEPNLKKGATLAFA-HGFSI--------HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPD 148 (338)
T ss_dssp ECSCHHHHHHHHHHHTGGGCCTTCEEEES-CCHHH--------HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCE
T ss_pred EeCCcHHHHHHHHHHHHhhCCCCCEEEEc-CCchh--------HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeE
Confidence 9999999899998 999999999998876 45432 11111111111111 124666543 3333 5555
Q ss_pred EEEEc-cCCHHHHHHHHHHHhcCCc-e--EEEc
Q 012596 278 AMVVA-SKDRKLANAVQQLLASKHL-R--ISTS 306 (460)
Q Consensus 278 ~i~i~-~~d~~~~~~l~~lL~~~g~-~--v~~~ 306 (460)
.+... ..+.+..+.+.++++..|. + +...
T Consensus 149 ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~ 181 (338)
T 1np3_A 149 LIAIYQDASGNAKNVALSYACGVGGGRTGIIET 181 (338)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHTTHHHHCEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCccceEee
Confidence 43433 3345677889999999887 4 5544
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.2e-13 Score=129.79 Aligned_cols=149 Identities=10% Similarity=0.110 Sum_probs=108.1
Q ss_pred CceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHH
Q 012596 66 DNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTA 141 (460)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~ 141 (460)
..+++++++. |+ .++||+..... +.....++.++.+.|+.. .+ .++ ..++|||||+|.||..
T Consensus 71 ~~~~~~~~~~-~~-~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~-----~~-----~~l--~g~tvGIIGlG~IG~~ 136 (290)
T 3gvx_A 71 NVVLCSNAGA-YS-ISVAEHAFALLLAHAKNILENNELMKAGIFRQS-----PT-----TLL--YGKALGILGYGGIGRR 136 (290)
T ss_dssp TSEEECCHHH-HH-HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CC-----CCC--TTCEEEEECCSHHHHH
T ss_pred ceEEeecCCc-ce-eeHHHHHHHHHHHHHHhhhhhhhHhhhcccccC-----Cc-----eee--ecchheeeccCchhHH
Confidence 4567777654 65 69999998744 555566777777777431 11 123 3689999999999999
Q ss_pred HHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-hcHHHHH-HHh
Q 012596 142 MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGI 219 (460)
Q Consensus 142 ~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~~~~vl-~~i 219 (460)
+|.+|...| ++|++|+|+++..+ .+...+++++++++||+|++++|. ..++.++ .+.
T Consensus 137 vA~~l~~~G--~~V~~~dr~~~~~~-------------------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~ 195 (290)
T 3gvx_A 137 VAHLAKAFG--MRVIAYTRSSVDQN-------------------VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRL 195 (290)
T ss_dssp HHHHHHHHT--CEEEEECSSCCCTT-------------------CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHH
T ss_pred HHHHHHhhC--cEEEEEeccccccc-------------------cccccCChHHHhhccCeEEEEeeccccchhhhhHHH
Confidence 999999988 99999999863211 023455889999999999999995 4566555 456
Q ss_pred hhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 220 SDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 220 ~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
.+.+++++++|++++|-..++ +.+.+.+.+
T Consensus 196 l~~mk~gailIN~aRG~~vd~-~aL~~aL~~ 225 (290)
T 3gvx_A 196 LANARKNLTIVNVARADVVSK-PDMIGFLKE 225 (290)
T ss_dssp HTTCCTTCEEEECSCGGGBCH-HHHHHHHHH
T ss_pred HhhhhcCceEEEeehhcccCC-cchhhhhhh
Confidence 788899999999998876653 344444443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-13 Score=132.23 Aligned_cols=153 Identities=10% Similarity=0.146 Sum_probs=107.7
Q ss_pred CCceeecCCCCCCC-CCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 65 NDNTIITPYPDDPD-PEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
..++.|++.|+ +. ..++||+..... +.....++.++.+.|+. . ...++ ..++|||||+|.||
T Consensus 85 ~~gi~v~~~~~-~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~------~----~~~~l--~g~tvGIiG~G~IG 151 (315)
T 3pp8_A 85 DASIPLFRLED-TGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKP------L----PEYTR--EEFSVGIMGAGVLG 151 (315)
T ss_dssp CTTSCEEEC---CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC------C----CCCCS--TTCCEEEECCSHHH
T ss_pred cCCCEEEEcCC-CCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCC------C----CCCCc--CCCEEEEEeeCHHH
Confidence 34778899998 53 689999998854 55555666777776643 1 12234 36899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-hcHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~~~~vl-~ 217 (460)
..+|.+|...| ++|++|+|+++..+ +. . ......++++++++||+|++++|. ..++.++ .
T Consensus 152 ~~vA~~l~~~G--~~V~~~dr~~~~~~-----~~--~---------~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~ 213 (315)
T 3pp8_A 152 AKVAESLQAWG--FPLRCWSRSRKSWP-----GV--E---------SYVGREELRAFLNQTRVLINLLPNTAQTVGIINS 213 (315)
T ss_dssp HHHHHHHHTTT--CCEEEEESSCCCCT-----TC--E---------EEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSH
T ss_pred HHHHHHHHHCC--CEEEEEcCCchhhh-----hh--h---------hhcccCCHHHHHhhCCEEEEecCCchhhhhhccH
Confidence 99999999888 99999999864211 10 0 001114788889999999999995 4566666 5
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
+....+++++++|++++|-..++ ..+.+.+.
T Consensus 214 ~~l~~mk~gailIN~aRG~~vd~-~aL~~aL~ 244 (315)
T 3pp8_A 214 ELLDQLPDGAYVLNLARGVHVQE-ADLLAALD 244 (315)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCH-HHHHHHHH
T ss_pred HHHhhCCCCCEEEECCCChhhhH-HHHHHHHH
Confidence 66778899999999999876654 23444443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=119.49 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=105.6
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhc------CCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANK------KSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~------G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (460)
+..++||+|||+|+||.++|..|.++ | ++|++++|... ..+...+.|.... . ....++.++
T Consensus 51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G--~~ViVg~r~~sks~e~A~e~G~~v~-------d---~ta~s~aEA 118 (525)
T 3fr7_A 51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKIGLRKGSKSFDEARAAGFTEE-------S---GTLGDIWET 118 (525)
T ss_dssp TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCC--CEEEEEECTTCSCHHHHHHTTCCTT-------T---TCEEEHHHH
T ss_pred hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCC--CEEEEEeCCchhhHHHHHHCCCEEe-------c---CCCCCHHHH
Confidence 43338999999999999999999998 8 89988777543 3344445554210 0 012367888
Q ss_pred cCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH---HhCCCCCCEEEEECcccHHHH--
Q 012596 197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ---ALRNPRQPFIALSGPSFALEL-- 271 (460)
Q Consensus 197 ~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~---~lg~~~~~~~v~~gP~~a~e~-- 271 (460)
++++|+||++||.....+++++|.++++++++ |++..|+... .+.+ .++. .. -.+...|..+...
T Consensus 119 a~~ADVVILaVP~~~~~eVl~eI~p~LK~GaI-Ls~AaGf~I~-------~le~~~i~~p~-dv-~VVrVmPNtPg~~VR 188 (525)
T 3fr7_A 119 VSGSDLVLLLISDAAQADNYEKIFSHMKPNSI-LGLSHGFLLG-------HLQSAGLDFPK-NI-SVIAVCPKGMGPSVR 188 (525)
T ss_dssp HHHCSEEEECSCHHHHHHHHHHHHHHSCTTCE-EEESSSHHHH-------HHHHTTCCCCT-TS-EEEEEEESSCHHHHH
T ss_pred HhcCCEEEECCChHHHHHHHHHHHHhcCCCCe-EEEeCCCCHH-------HHhhhcccCCC-CC-cEEEEecCCCchhHH
Confidence 99999999999998888899999999999987 5777777643 2332 2222 12 2355566554432
Q ss_pred -----h-----ccCCeEEEEcc-CCHHHHHHHHHHHhcCCce
Q 012596 272 -----M-----NKLPTAMVVAS-KDRKLANAVQQLLASKHLR 302 (460)
Q Consensus 272 -----~-----~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~ 302 (460)
+ .|.+..+.+.. .+.+..+.+..++...|..
T Consensus 189 ~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~ 230 (525)
T 3fr7_A 189 RLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSP 230 (525)
T ss_dssp HHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCS
T ss_pred HHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCC
Confidence 2 34444444432 2346778889999988864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-10 Score=110.85 Aligned_cols=199 Identities=14% Similarity=0.137 Sum_probs=127.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-----------hhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-----------EKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~-----------~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
..||+|||+|.||+.+|..++.+| ++|++||++++.+++.. +.|...........-..+..++|+.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~ 83 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGG--FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE 83 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence 468999999999999999999999 99999999987654322 11110000000001134677889999
Q ss_pred hcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHh
Q 012596 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELM 272 (460)
Q Consensus 196 a~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~ 272 (460)
++++||+||-+||.. .-.+++.+|.++++++++|-+-+.|+.+.. +.+....+. .-......|.+...
T Consensus 84 a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~-------ia~~~~~p~r~ig~HffNP~~~m~-- 154 (319)
T 3ado_A 84 AVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSK-------LFTGLAHVKQCIVAHPVNPPYYIP-- 154 (319)
T ss_dssp HTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHH-------HHTTCTTGGGEEEEEECSSTTTCC--
T ss_pred HhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchh-------hhhhccCCCcEEEecCCCCccccc--
Confidence 999999999999964 346799999999999999988888887642 223222210 11112334443221
Q ss_pred ccCCeEEEEcc-CCHHHHHHHHHHHhcCCceEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012596 273 NKLPTAMVVAS-KDRKLANAVQQLLASKHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350 (460)
Q Consensus 273 ~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~-~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~ 350 (460)
..-++-+. .+++.++++.+++...|.... ...|..|-. ...+....++|+
T Consensus 155 ---LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGFi-------------------------~NRl~~~~~~EA 206 (319)
T 3ado_A 155 ---LVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFV-------------------------LNRLQYAIISEA 206 (319)
T ss_dssp ---EEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTTTT-------------------------HHHHHHHHHHHH
T ss_pred ---hHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCCEe-------------------------HHHHHHHHHHHH
Confidence 11222222 467899999999999986654 556654421 123345566777
Q ss_pred HHHHHHcCCCcccc
Q 012596 351 RWLATKMGAKPATI 364 (460)
Q Consensus 351 ~~la~a~Gi~~~~~ 364 (460)
+.+.+.-+.+++++
T Consensus 207 ~~lv~eGvas~edI 220 (319)
T 3ado_A 207 WRLVEEGIVSPSDL 220 (319)
T ss_dssp HHHHHTTSSCHHHH
T ss_pred HHHHHhCCCCHHHH
Confidence 77776666665543
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-11 Score=121.09 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=106.9
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|+ |.+.++||+..... +...+.++.++++.|.. |....+.++ ..++|||||.|++|.
T Consensus 85 ~~gI~v~n~p~-~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~l--~g~tvGIiG~G~IG~ 154 (334)
T 3kb6_A 85 KKGILVTHIPA-YSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQ-------DSEILAREL--NRLTLGVIGTGRIGS 154 (334)
T ss_dssp HHTCEEECCTT-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC-------CGGGCBCCG--GGSEEEEECCSHHHH
T ss_pred HCCCEEEECCC-cCcHHHHHHHHHHHHHHhhcccccccccccccccc-------cccccccee--cCcEEEEECcchHHH
Confidence 45789999999 99999999988744 44444555556665522 222223345 367999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|.++..-| .+|.+||+..... ..+.+ +. ..+++++++.||+|++++|.+ .++.++ .+
T Consensus 155 ~va~~~~~fg--~~v~~~d~~~~~~--~~~~~--------------~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~ 215 (334)
T 3kb6_A 155 RVAMYGLAFG--MKVLCYDVVKRED--LKEKG--------------CV-YTSLDELLKESDVISLHVPYTKETHHMINEE 215 (334)
T ss_dssp HHHHHHHHTT--CEEEEECSSCCHH--HHHTT--------------CE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHH
T ss_pred HHHHhhcccC--ceeeecCCccchh--hhhcC--------------ce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHH
Confidence 9999999777 9999999875421 22222 12 247889999999999999954 456555 34
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 216 ~l~~mk~~a~lIN~aRG~iVde 237 (334)
T 3kb6_A 216 RISLMKDGVYLINTARGKVVDT 237 (334)
T ss_dssp HHHHSCTTEEEEECSCGGGBCH
T ss_pred HHhhcCCCeEEEecCccccccH
Confidence 5567899999999999976654
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.08 E-value=9e-10 Score=104.41 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=94.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.|||+|||+|.||++||..|.++| ++|++|++. ++ +++|| |+|
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G--~~V~~~~~~--------------------------------~~-~~~aD--ila 48 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVG--HYVTVLHAP--------------------------------ED-IRDFE--LVV 48 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTT--CEEEECSSG--------------------------------GG-GGGCS--EEE
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCC--CEEEEecCH--------------------------------HH-hccCC--EEE
Confidence 589999999999999999999999 999999873 11 35688 999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEE-ECcccHHHHhccCCeEEEEccCC
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALELMNKLPTAMVVASKD 285 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~-~gP~~a~e~~~g~~~~i~i~~~d 285 (460)
||...+.++++++.+.+++++++++++..+..+ .+ +.+.+ .|. .++ .-|.. +.. ..+...+
T Consensus 49 vP~~ai~~vl~~l~~~l~~g~ivvd~sgs~~~~---vl-~~~~~-~g~-----~fvg~HPm~------g~~--~~i~a~d 110 (232)
T 3dfu_A 49 IDAHGVEGYVEKLSAFARRGQMFLHTSLTHGIT---VM-DPLET-SGG-----IVMSAHPIG------QDR--WVASALD 110 (232)
T ss_dssp ECSSCHHHHHHHHHTTCCTTCEEEECCSSCCGG---GG-HHHHH-TTC-----EEEEEEEEE------TTE--EEEEESS
T ss_pred EcHHHHHHHHHHHHHhcCCCCEEEEECCcCHHH---HH-HHHHh-CCC-----cEEEeeeCC------CCc--eeeeCCC
Confidence 999999999999999999999999987433322 11 12222 132 122 12332 222 2334457
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 286 RKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
.+.++.++++++..|.+++..++-...
T Consensus 111 ~~a~~~l~~L~~~lG~~vv~~~~~~hd 137 (232)
T 3dfu_A 111 ELGETIVGLLVGELGGSIVEIADDKRA 137 (232)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCGGGHH
T ss_pred HHHHHHHHHHHHHhCCEEEEeCHHHHh
Confidence 888999999999999888877654443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=108.17 Aligned_cols=103 Identities=12% Similarity=0.304 Sum_probs=76.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHH--HHH-hhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQ--SIN-EKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~--~V~v~~r~~~~~~--~l~-~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+|||+|||+|+||+++|..|+.+| + +|++||+++++++ .+. ..+. .+.+ +..+..+++. ++++++|
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g--~~~~V~l~d~~~~~~~~~~~~~~~~~--~~~~----~~~v~~~~~~-~~~~~aD 77 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRG--IAREIVLEDIAKERVEAEVLDMQHGS--SFYP----TVSIDGSDDP-EICRDAD 77 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSHHHHHHHHHHHHHTG--GGST----TCEEEEESCG-GGGTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCChhHHHHHHHHHHhhh--hhcC----CeEEEeCCCH-HHhCCCC
Confidence 589999999999999999999998 7 9999999987765 332 2332 1111 2234455465 4578999
Q ss_pred EEEEccchhcHH----------------HHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 202 YCLHAMPVQFSS----------------SFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 202 iVilaVp~~~~~----------------~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+||++++..... ++++.+.++ .++++||+++||++..
T Consensus 78 ~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~ 130 (319)
T 1lld_A 78 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIA 130 (319)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHH
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHH
Confidence 999999754332 677778775 6788999999998764
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=106.28 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=76.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-c-CCCccCCCCCCCCceEE-eCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-H-CNCRYFPEQKLPENVIA-TTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g-~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiV 203 (460)
||||+|||+|.||+++|..|+++|..++|++||+++++++.+... + .. .+ ++..+.+ ++++ +++++||+|
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~-~~-----~~~~~~~~~~d~-~~~~~aDvV 73 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM-AN-----LEAHGNIVINDW-AALADADVV 73 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG-GG-----SSSCCEEEESCG-GGGTTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhh-hh-----cCCCeEEEeCCH-HHhCCCCEE
Confidence 479999999999999999999987435899999999887766532 1 10 01 1112333 4677 678999999
Q ss_pred EEccchhc--------------------HHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 204 LHAMPVQF--------------------SSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 204 ilaVp~~~--------------------~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
|+++|... +.++++.+.++. +++++|.++|+++.
T Consensus 74 iiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV 127 (309)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred EEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence 99999755 367777787765 57788889997754
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-10 Score=116.17 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=96.4
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMA 143 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A 143 (460)
+.++.|+|.|. |...++||+..... ...|+ . +.++ ..++|||||+|.||..+|
T Consensus 82 ~~gI~v~n~pg-~~~~~VAE~~l~~lL~l~r~-------~----------------g~~l--~gktvGIIGlG~IG~~vA 135 (381)
T 3oet_A 82 QAGIGFSAAPG-CNAIAVVEYVFSALLMLAER-------D----------------GFSL--RDRTIGIVGVGNVGSRLQ 135 (381)
T ss_dssp HTTCEEECCTT-TTHHHHHHHHHHHHHHHHHH-------T----------------TCCG--GGCEEEEECCSHHHHHHH
T ss_pred hCCEEEEECCC-cCcchhHHHHHHHHHHHHHh-------c----------------CCcc--CCCEEEEEeECHHHHHHH
Confidence 46899999999 99999999988754 22111 0 1123 357999999999999999
Q ss_pred HHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-c----HHHHH-H
Q 012596 144 AHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-F----SSSFL-E 217 (460)
Q Consensus 144 ~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~----~~~vl-~ 217 (460)
.+|...| ++|.+||+..+... .+ ....++++++++||+|++++|.+ . +..++ .
T Consensus 136 ~~l~a~G--~~V~~~d~~~~~~~----~~---------------~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~ 194 (381)
T 3oet_A 136 TRLEALG--IRTLLCDPPRAARG----DE---------------GDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADE 194 (381)
T ss_dssp HHHHHTT--CEEEEECHHHHHTT----CC---------------SCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCH
T ss_pred HHHHHCC--CEEEEECCChHHhc----cC---------------cccCCHHHHHhhCCEEEEcCcCCccccccchhhcCH
Confidence 9999888 99999998543210 11 01247889999999999999954 3 55554 3
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 195 ~~l~~mk~gailIN~aRG~vvde 217 (381)
T 3oet_A 195 TLIRRLKPGAILINACRGPVVDN 217 (381)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCH
T ss_pred HHHhcCCCCcEEEECCCCcccCH
Confidence 45677899999999999876654
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.1e-10 Score=113.12 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=99.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMA 143 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A 143 (460)
+.++.|+|.|. +...++||+..... ...|+ |. .++ ..++|||||+|+||..+|
T Consensus 79 ~~gI~v~n~pg-~~~~~vAE~~l~~lL~l~r~---------~~--------------~~l--~g~tvGIIGlG~IG~~vA 132 (380)
T 2o4c_A 79 EAGIAWSSAPG-CNARGVVDYVLGCLLAMAEV---------RG--------------ADL--AERTYGVVGAGQVGGRLV 132 (380)
T ss_dssp HHTCEEECCTT-TTHHHHHHHHHHHHHHHHHH---------HT--------------CCG--GGCEEEEECCSHHHHHHH
T ss_pred hCCCEEEeCCC-cChHHHHHHHHHHHHHHHhh---------hh--------------ccc--CCCEEEEEeCCHHHHHHH
Confidence 35789999998 99999999987744 22211 21 123 367999999999999999
Q ss_pred HHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-----HHHHH-H
Q 012596 144 AHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-----SSSFL-E 217 (460)
Q Consensus 144 ~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-----~~~vl-~ 217 (460)
.+|...| ++|++||++.+.. ..+. . ..++++++++||+|++++|.+. +..++ +
T Consensus 133 ~~l~~~G--~~V~~~d~~~~~~----~~g~--------------~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~ 191 (380)
T 2o4c_A 133 EVLRGLG--WKVLVCDPPRQAR----EPDG--------------E-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDE 191 (380)
T ss_dssp HHHHHTT--CEEEEECHHHHHH----STTS--------------C-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCH
T ss_pred HHHHHCC--CEEEEEcCChhhh----ccCc--------------c-cCCHHHHHHhCCEEEEeccCccccccchhhhcCH
Confidence 9999888 9999999865422 1111 0 1378888899999999999643 55555 4
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
+..+.+++++++|++++|-..++ ..+.+.+.
T Consensus 192 ~~l~~mk~gailIN~sRG~vvd~-~aL~~aL~ 222 (380)
T 2o4c_A 192 PRLAALRPGTWLVNASRGAVVDN-QALRRLLE 222 (380)
T ss_dssp HHHHTSCTTEEEEECSCGGGBCH-HHHHHHHH
T ss_pred HHHhhCCCCcEEEECCCCcccCH-HHHHHHHH
Confidence 56677899999999998865543 23334443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.87 E-value=8.1e-09 Score=102.54 Aligned_cols=106 Identities=23% Similarity=0.318 Sum_probs=77.3
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
|+++|||+|||+|.||+++|..|+.+| + +|++||+++++++..... ... .+ ...+..+..+++. +++++|
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g--~~~V~l~D~~~~~~~~~~~~l~~~~-~~---~~~~~~i~~t~d~-~a~~~a 73 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDN--LADVVLFDIAEGIPQGKALDITHSM-VM---FGSTSKVIGTDDY-ADISGS 73 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSHHHHHHHHHHHHH-HH---HTCCCCEEEESCG-GGGTTC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCchHHHHHHHHHHhhh-hh---cCCCcEEEECCCH-HHhCCC
Confidence 445689999999999999999999999 7 899999998766653110 000 00 0112346676787 678999
Q ss_pred cEEEEcc--------------ch--hcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 201 DYCLHAM--------------PV--QFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 201 DiVilaV--------------p~--~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|+||+++ +. ....+++++|.++. ++++++..+|+..
T Consensus 74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~ 125 (317)
T 2ewd_A 74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLD 125 (317)
T ss_dssp SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH
T ss_pred CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHH
Confidence 9999999 32 23577888888875 5889999998554
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=101.21 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=75.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
.|||+|||+|.||+++|..|+..| + +|++||+++++++.... .+.. .++ ..+.++..++|+++++++||+|
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g--~~~V~L~D~~~~~~~~~~~~l~~~~-~~~---~~~~~i~~t~d~~ea~~~aDiV 82 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRE--LADVVLYDVVKGMPEGKALDLSHVT-SVV---DTNVSVRAEYSYEAALTGADCV 82 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSHHHHHHHHHHHHH-HHT---TCCCCEEEECSHHHHHTTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECChhHHHHHHHHHHhhh-hcc---CCCCEEEEeCCHHHHhCCCCEE
Confidence 579999999999999999999998 6 89999999877665221 1110 111 1244677888998789999999
Q ss_pred EEcc--chh--c-----------------HHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAM--PVQ--F-----------------SSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaV--p~~--~-----------------~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|+++ |.. . ..++++.|.++. ++.+++..+|-.
T Consensus 83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~ 135 (331)
T 1pzg_A 83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL 135 (331)
T ss_dssp EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCch
Confidence 9998 521 1 456677777775 677887777743
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=100.94 Aligned_cols=100 Identities=19% Similarity=0.252 Sum_probs=73.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhh---cCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEK---HCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~--~V~v~~r~~~~~~~l~~~---g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|.||+++|..|+.+| + +|++||+++++++.+... +.. +. .+..+.. ++. +++++||+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g--~~~~V~l~D~~~~~~~~~~~~l~~~~~--~~----~~~~i~~-~d~-~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKG--FAREMVLIDVDKKRAEGDALDLIHGTP--FT----RRANIYA-GDY-ADLKGSDV 70 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT--CCSEEEEECSSHHHHHHHHHHHHHHGG--GS----CCCEEEE-CCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEeCChHHHHHHHHHHHhhhh--hc----CCcEEEe-CCH-HHhCCCCE
Confidence 68999999999999999999998 7 999999998877765421 110 11 1123444 354 56799999
Q ss_pred EEEccchhc----------------HHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 203 CLHAMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 203 VilaVp~~~----------------~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
||+++|... +.++++.|.++. +++++|.++|+++.
T Consensus 71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDV 121 (319)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHH
Confidence 999999633 356677777774 67788888887654
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-07 Score=103.16 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=112.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-------C-CCccCCCCCCCCceEEeCCHHhhc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------C-NCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g-------~-~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
...||+|||+|.||..+|..++.+| ++|+++|++++.+++..+.- . .............+..+++.++ +
T Consensus 315 ~i~~v~ViGaG~MG~gIA~~~a~aG--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 391 (742)
T 3zwc_A 315 PVSSVGVLGLGTMGRGIAISFARVG--ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-L 391 (742)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-G
T ss_pred cccEEEEEcccHHHHHHHHHHHhCC--CchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-H
Confidence 3579999999999999999999999 99999999987654322110 0 0000011122235677778765 7
Q ss_pred CCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHHhcc
Q 012596 198 LGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALELMNK 274 (460)
Q Consensus 198 ~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~-~~v~~gP~~a~e~~~g 274 (460)
++||+||-+|+.. .-.+++.++.+++++++++-+-+.++.... +.+....+... ......|....
T Consensus 392 ~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~-------ia~~~~~p~r~ig~HFfnP~~~m----- 459 (742)
T 3zwc_A 392 STVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDD-------IASSTDRPQLVIGTHFFSPAHVM----- 459 (742)
T ss_dssp GSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH-------HHTTSSCGGGEEEEECCSSTTTC-----
T ss_pred hhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHH-------HHhhcCCccccccccccCCCCCC-----
Confidence 8999999999964 346789999999999999988887777642 23322221110 11223343221
Q ss_pred CCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 275 LPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 275 ~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
...-++-+. .+++.++.+.++....|...+...|..|
T Consensus 460 ~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pG 497 (742)
T 3zwc_A 460 RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG 497 (742)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECCCSTT
T ss_pred ceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccCCCCC
Confidence 111222222 4678899999999999988877777554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-07 Score=81.49 Aligned_cols=97 Identities=10% Similarity=0.138 Sum_probs=67.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCH---H-hhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDA---K-TALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~---~-ea~~~aD 201 (460)
.|+|+|+|+|.+|..++..|.+.| ++|++++++++.++.+.+. +... +..+ ..+. . ..++++|
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~~~~~~-~~~d---------~~~~~~l~~~~~~~~d 71 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEIDALV-INGD---------CTKIKTLEDAGIEDAD 71 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCSSEE-EESC---------TTSHHHHHHTTTTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHhcCcEE-EEcC---------CCCHHHHHHcCcccCC
Confidence 479999999999999999999998 8999999999888877654 3210 0000 0122 1 1256899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+||+++|.......+..+.+.+.++.+++ .+++.
T Consensus 72 ~vi~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~ 105 (140)
T 1lss_A 72 MYIAVTGKEEVNLMSSLLAKSYGINKTIA-RISEI 105 (140)
T ss_dssp EEEECCSCHHHHHHHHHHHHHTTCCCEEE-ECSST
T ss_pred EEEEeeCCchHHHHHHHHHHHcCCCEEEE-EecCH
Confidence 99999998766555555555566665544 45443
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-08 Score=103.81 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=60.1
Q ss_pred CCCeEEEECcchH--HHHHHHHHHhc----CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012596 126 RTNKVVVLGGGSF--GTAMAAHVANK----KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~m--G~~~A~~La~~----G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~ 199 (460)
++|||+|||+|.| |.++|..|++. | ++|++||+++++++.+.... ..+++....+.++.+++|..+++++
T Consensus 2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~--~eV~L~Di~~e~l~~~~~~~--~~~l~~~~~~~~I~~ttD~~eal~d 77 (480)
T 1obb_A 2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSG--STVTLMDIDEERLDAILTIA--KKYVEEVGADLKFEKTMNLDDVIID 77 (480)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTT--CEEEEECSCHHHHHHHHHHH--HHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCcCCC--CEEEEEeCCHHHHHHHHHHH--HHHhccCCCCcEEEEECCHHHHhCC
Confidence 4689999999996 56667788754 5 89999999998877654432 1122223345678888899888999
Q ss_pred CcEEEEccch
Q 012596 200 ADYCLHAMPV 209 (460)
Q Consensus 200 aDiVilaVp~ 209 (460)
||+||++++.
T Consensus 78 AD~VIiaagv 87 (480)
T 1obb_A 78 ADFVINTAMV 87 (480)
T ss_dssp CSEEEECCCT
T ss_pred CCEEEECCCc
Confidence 9999999964
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-08 Score=98.64 Aligned_cols=102 Identities=24% Similarity=0.414 Sum_probs=73.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+|||+|||+|.||+++|..|+.+| + +|++||+++++++.... .+.. .+. ..+..+..++|. +++++||+|
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g--~~~V~L~Di~~~~l~~~~~~l~~~~-~~~---~~~~~i~~t~d~-~al~~aD~V 86 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKD--LGDVYMFDIIEGVPQGKALDLNHCM-ALI---GSPAKIFGENNY-EYLQNSDVV 86 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSTTHHHHHHHHHHHHH-HHH---TCCCCEEEESCG-GGGTTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHhHh-hcc---CCCCEEEECCCH-HHHCCCCEE
Confidence 479999999999999999999998 6 89999999887664221 1100 000 113457777888 678999999
Q ss_pred EEcc--ch--------------hcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaV--p~--------------~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|+++ |. ....++++++.++. ++.+++..+|-+
T Consensus 87 I~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~ 134 (328)
T 2hjr_A 87 IITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPL 134 (328)
T ss_dssp EECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred EEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCch
Confidence 9998 42 12456667777776 677877777743
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=105.49 Aligned_cols=119 Identities=17% Similarity=0.224 Sum_probs=82.9
Q ss_pred CCCeEEEECcchH-HHHHHHHHHhc--CC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGGGSF-GTAMAAHVANK--KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~m-G~~~A~~La~~--G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+.|||+|||+|.+ |.++|..|+.. +. .++|.+||+++++++.+..... .+++....+.++.+++|..+++++||
T Consensus 27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~--~~l~~~~~~~~I~~t~D~~eal~~AD 104 (472)
T 1u8x_X 27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACD--VFIREKAPDIEFAATTDPEEAFTDVD 104 (472)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHH--HHHHHHCTTSEEEEESCHHHHHSSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHH--HHhccCCCCCEEEEECCHHHHHcCCC
Confidence 3469999999999 66688888877 33 3789999999988776543221 22223344667888889988899999
Q ss_pred EEEEccchhc------------------------------------HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHH
Q 012596 202 YCLHAMPVQF------------------------------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS 245 (460)
Q Consensus 202 iVilaVp~~~------------------------------------~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~ 245 (460)
+||++++... +.++++.|.++. |++++|..+|-++ .+.
T Consensus 105 ~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvd-----i~T 178 (472)
T 1u8x_X 105 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA-----IVA 178 (472)
T ss_dssp EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH-----HHH
T ss_pred EEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH-----HHH
Confidence 9999998732 334455566654 6788888888543 233
Q ss_pred HHHHHHh
Q 012596 246 QIIPQAL 252 (460)
Q Consensus 246 e~l~~~l 252 (460)
+.+.+..
T Consensus 179 ~~~~k~~ 185 (472)
T 1u8x_X 179 EATRRLR 185 (472)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 4554443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-08 Score=98.04 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=73.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|.||+++|..|+.++.+++|++||+++++++.+... +....+ ..+..+..+++.++ +++||+||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~----~~~~~i~~t~d~~~-l~~aDvVii 75 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVG----LFDTKVTGSNDYAD-TANSDIVII 75 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHH----TCCCEEEEESCGGG-GTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcc----cCCcEEEECCCHHH-HCCCCEEEE
Confidence 69999999999999999999863338999999998877655321 110000 01234667778876 899999999
Q ss_pred ccchhc----------------HHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 206 AMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 206 aVp~~~----------------~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++|... +.++.+.+.++. ++..++.++|.++
T Consensus 76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~~ 122 (310)
T 1guz_A 76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLD 122 (310)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHH
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchH
Confidence 997421 244556666664 6777777887554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.5e-08 Score=95.51 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=69.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~--~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|||+|||+|.||+++|..|+.+| + +|++||+++++++..... ... .+. .+..+.. ++. +++++||+|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g--~~~eV~L~D~~~~~~~~~~~~l~~~~-~~~----~~~~i~~-~~~-~a~~~aDvV 71 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRG--SCSELVLVDRDEDRAQAEAEDIAHAA-PVS----HGTRVWH-GGH-SELADAQVV 71 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSHHHHHHHHHHHTTSC-CTT----SCCEEEE-ECG-GGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCCHHHHHHHHHhhhhhh-hhc----CCeEEEE-CCH-HHhCCCCEE
Confidence 69999999999999999999998 6 999999998766543221 111 111 1122333 454 568999999
Q ss_pred EEccchhc----------------HHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~~~----------------~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|++++... +.++++.+.++ .++++++..+|+++
T Consensus 72 Ii~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~ 120 (304)
T 2v6b_A 72 ILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD 120 (304)
T ss_dssp EECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred EEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence 99995322 36667777777 47888888888765
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-08 Score=98.12 Aligned_cols=96 Identities=16% Similarity=0.237 Sum_probs=73.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|+|||+|.||..++..|.+. |. .+|++|+|++++++++.+.... .+..+++++++++++|+|++
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~-~~V~v~dr~~~~~~~l~~~~~~-----------~~~~~~~~~e~v~~aDiVi~ 202 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSF-KEVRIWNRTKENAEKFADTVQG-----------EVRVCSSVQEAVAGADVIIT 202 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCC-SEEEEECSSHHHHHHHHHHSSS-----------CCEECSSHHHHHTTCSEEEE
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHhhC-----------CeEEeCCHHHHHhcCCEEEE
Confidence 57999999999999999999886 62 4899999999999888765210 13556788898999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
|+|+. ..++.. +.++++++|++++. ..++
T Consensus 203 atp~~--~~v~~~--~~l~~g~~vi~~g~-~~p~ 231 (312)
T 2i99_A 203 VTLAT--EPILFG--EWVKPGAHINAVGA-SRPD 231 (312)
T ss_dssp CCCCS--SCCBCG--GGSCTTCEEEECCC-CSTT
T ss_pred EeCCC--CcccCH--HHcCCCcEEEeCCC-CCCC
Confidence 99953 223222 56788999988753 3443
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-08 Score=97.11 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=73.8
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCC-CccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCN-CRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~-~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|+.+|||+|||+|.||..+|..|+..| + +|+++|+++++++.....-.. ..+ ...+..+..++|. +++++||
T Consensus 1 m~~~~kI~VIGaG~vG~~ia~~la~~g--~~~v~L~Di~~~~l~~~~~~l~~~~~~---~~~~~~i~~t~d~-~al~~aD 74 (322)
T 1t2d_A 1 MAPKAKIVLVGSGMIGGVMATLIVQKN--LGDVVLFDIVKNMPHGKALDTSHTNVM---AYSNCKVSGSNTY-DDLAGAD 74 (322)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSHHHHHHHHHHTHHHH---HTCCCCEEEECCG-GGGTTCS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHhhhhh---cCCCcEEEECCCH-HHhCCCC
Confidence 445689999999999999999999998 5 899999998766533221000 000 0112356777788 6789999
Q ss_pred EEEEcc--chh-------------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAM--PVQ-------------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaV--p~~-------------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+||+++ |.. ...++++.|.++. ++.++|..+|-.
T Consensus 75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~ 129 (322)
T 1t2d_A 75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPV 129 (322)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCCh
Confidence 999998 421 2455666777776 677877777743
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-08 Score=86.74 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=71.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|+|||+|.||..++..|.+.| ++|++|+|++++++.+.+... ..+...++..++++++|+||.|
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g--~~v~v~~r~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~Divi~a 87 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQ--YKVTVAGRNIDHVRAFAEKYE-----------YEYVLINDIDSLIKNNDVIITA 87 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTT--CEEEEEESCHHHHHHHHHHHT-----------CEEEECSCHHHHHHTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHhC-----------CceEeecCHHHHhcCCCEEEEe
Confidence 589999999999999999999988 789999999998887765421 0123456788888999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+|.... ++ -...++++.+++++...
T Consensus 88 t~~~~~--~~--~~~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 88 TSSKTP--IV--EERSLMPGKLFIDLGNP 112 (144)
T ss_dssp SCCSSC--SB--CGGGCCTTCEEEECCSS
T ss_pred CCCCCc--Ee--eHHHcCCCCEEEEccCC
Confidence 997631 11 12456778899988653
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5.3e-08 Score=94.73 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=71.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|+|||+|.||.+++..|.+.| .+|++|+|++++++.+.+.. ++.+.+++.++++++|+||.|
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g--~~V~v~~r~~~~~~~l~~~~-------------g~~~~~~~~~~~~~aDiVi~a 193 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEG--AKVFLWNRTKEKAIKLAQKF-------------PLEVVNSPEEVIDKVQVIVNT 193 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSHHHHHHHTTTS-------------CEEECSCGGGTGGGCSEEEEC
T ss_pred CCEEEEECchHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHc-------------CCeeehhHHhhhcCCCEEEEe
Confidence 589999999999999999999999 79999999998887775431 134445777778899999999
Q ss_pred cchhcHHHHHHHh-hhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGI-SDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i-~~~l~~~~iIV~~~~ 234 (460)
+|.....++...+ .+.++++++++++..
T Consensus 194 tp~~~~~~~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 194 TSVGLKDEDPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp SSTTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred CCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 9976532211112 355778999999875
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.7e-07 Score=90.81 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=72.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|||+|.||..+|..|...| .+|++|+|++++.+.+.+.|.. .....+++++++++|+|++
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDvVi~ 221 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALG--ANVKVGARSSAHLARITEMGLV------------PFHTDELKEHVKDIDICIN 221 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCE------------EEEGGGHHHHSTTCSEEEE
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCe------------EEchhhHHHHhhCCCEEEE
Confidence 3689999999999999999999888 8999999998776665543321 1112467788899999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
++|...+.. +....++++.++|++..|
T Consensus 222 ~~p~~~i~~---~~~~~mk~g~~lin~a~g 248 (300)
T 2rir_A 222 TIPSMILNQ---TVLSSMTPKTLILDLASR 248 (300)
T ss_dssp CCSSCCBCH---HHHTTSCTTCEEEECSST
T ss_pred CCChhhhCH---HHHHhCCCCCEEEEEeCC
Confidence 999854322 234567889999999875
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-07 Score=90.57 Aligned_cols=103 Identities=11% Similarity=0.161 Sum_probs=70.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH--HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS--INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~--l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|.||.++|..|+.+|...+|++||+++++++. +.-.+... ++ ..+..+.+++| .+++++||+||+
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~-~~---~~~~~i~~t~d-~~a~~~aDiVVi 75 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GI---DKYPKIVGGAD-YSLLKGSEIIVV 75 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH-TT---TCCCEEEEESC-GGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhh-hc---CCCCEEEEeCC-HHHhCCCCEEEE
Confidence 7999999999999999999999822289999999987652 21111111 11 12345677777 677899999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+.... .+.++.+.+.++ .++.+++..+|-+
T Consensus 76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPv 121 (294)
T 1oju_A 76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPM 121 (294)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcc
Confidence 87421 123344556565 5678888888743
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=9.5e-08 Score=99.27 Aligned_cols=122 Identities=15% Similarity=0.246 Sum_probs=81.9
Q ss_pred hccCCCeEEEECcchH-HHHHHHHHHhc--CC-CCeEEEEeCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012596 123 ILERTNKVVVLGGGSF-GTAMAAHVANK--KS-QLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~m-G~~~A~~La~~--G~-~~~V~v~~r~~--~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (460)
+|.+.|||+|||+|.+ |.+++..|+.+ +. .++|++||+++ ++++.+.... ..+++....+..+.+++|..++
T Consensus 3 ~m~~~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~--~~~~~~~~~~~~i~~t~D~~ea 80 (450)
T 1s6y_A 3 AMDKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA--KRMVEKAGVPIEIHLTLDRRRA 80 (450)
T ss_dssp ----CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH--HHHHHHTTCCCEEEEESCHHHH
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHH--HHHHhhcCCCcEEEEeCCHHHH
Confidence 4533579999999999 88888888873 32 27899999999 8776644321 1122223345567888898888
Q ss_pred cCCCcEEEEccchhc------------------------------------HHHHHHHhhhcCCCCCeEEEeccCCccch
Q 012596 197 LLGADYCLHAMPVQF------------------------------------SSSFLEGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 197 ~~~aDiVilaVp~~~------------------------------------~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+++||+||++++... +.++++.|.++. |++++|..+|-++
T Consensus 81 l~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNPvd--- 156 (450)
T 1s6y_A 81 LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAG--- 156 (450)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH---
T ss_pred hCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH---
Confidence 999999999998532 334455566654 6889999888553
Q ss_pred hhhHHHHHHHHh
Q 012596 241 LRMMSQIIPQAL 252 (460)
Q Consensus 241 ~~~l~e~l~~~l 252 (460)
.+.+.+.+..
T Consensus 157 --ivT~a~~k~~ 166 (450)
T 1s6y_A 157 --MVTEAVLRYT 166 (450)
T ss_dssp --HHHHHHHHHC
T ss_pred --HHHHHHHHhC
Confidence 3345555544
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-07 Score=89.92 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=70.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|||+|.||..+|..|...| .+|++|+|++++.+.+.+.|.. .....+++++++++|+|++
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDvVi~ 219 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDLLARIAEMGME------------PFHISKAAQELRDVDVCIN 219 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTSE------------EEEGGGHHHHTTTCSEEEE
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHCCCe------------ecChhhHHHHhcCCCEEEE
Confidence 3589999999999999999999888 8999999998776655543321 1112467788899999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
++|...+.. +....++++.++|++..|
T Consensus 220 ~~p~~~i~~---~~l~~mk~~~~lin~ar~ 246 (293)
T 3d4o_A 220 TIPALVVTA---NVLAEMPSHTFVIDLASK 246 (293)
T ss_dssp CCSSCCBCH---HHHHHSCTTCEEEECSST
T ss_pred CCChHHhCH---HHHHhcCCCCEEEEecCC
Confidence 999754322 233457789999999864
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-07 Score=80.57 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=68.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-hhcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-EKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~-~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVi 204 (460)
.++|.|+|+|.||..++..|.+.| ++|+++++++++++.+. +.|... +..+.. . ...+.++ +.++|+||
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~~~~~~~~~g~~~-~~~d~~---~---~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYAFHRLNSEFSGFT-VVGDAA---E---FETLKECGMEKADMVF 89 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGGGGSCTTCCSEE-EESCTT---S---HHHHHTTTGGGCSEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHhcCCCcE-EEecCC---C---HHHHHHcCcccCCEEE
Confidence 589999999999999999999999 89999999988766554 222110 000000 0 0012222 56899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++++.......+..+...+.+...++..+++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 90 AFTNDDSTNFFISMNARYMFNVENVIARVYDPE 122 (155)
T ss_dssp ECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred EEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 999987665555455554445567777776554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-07 Score=82.04 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=66.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh--cCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA--LLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea--~~~aDiV 203 (460)
.++|+|+|+|.||..++..|.+. | ++|+++++++++++.+.+.|....+ .+..- .+.+.++ +.++|+|
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~~~~~~~~~~g~~~~~-gd~~~------~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIREEAAQQHRSEGRNVIS-GDATD------PDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCHHHHHHHHHTTCCEEE-CCTTC------HHHHHTBCSCCCCCEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCHHHHHHHHHCCCCEEE-cCCCC------HHHHHhccCCCCCCEE
Confidence 57899999999999999999998 9 8999999999998888776542111 00000 0012333 5789999
Q ss_pred EEccchhcHH-HHHHHhhhcCCCCCeEEEecc
Q 012596 204 LHAMPVQFSS-SFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 204 ilaVp~~~~~-~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|++++..... .++.. ...+.++..++..++
T Consensus 110 i~~~~~~~~~~~~~~~-~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 110 LLAMPHHQGNQTALEQ-LQRRNYKGQIAAIAE 140 (183)
T ss_dssp EECCSSHHHHHHHHHH-HHHTTCCSEEEEEES
T ss_pred EEeCCChHHHHHHHHH-HHHHCCCCEEEEEEC
Confidence 9999976543 33333 333445556666554
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-07 Score=97.91 Aligned_cols=134 Identities=11% Similarity=0.037 Sum_probs=89.4
Q ss_pred CceeecCCCCCCCCCccccccccccccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHH
Q 012596 66 DNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAH 145 (460)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~ 145 (460)
.+..++|+|. +.. +++|.... +. ...++..+.+ |.. ..+..+ ..++|+|||+|.||..+|..
T Consensus 214 ~Gilv~p~~~-vn~-sVae~l~r--~~-~~~~~~l~~g-w~r----------~~~~~l--~GktVgIIG~G~IG~~vA~~ 275 (479)
T 1v8b_A 214 QNELLFTAIN-VND-AVTKQKYD--NV-YGCRHSLPDG-LMR----------ATDFLI--SGKIVVICGYGDVGKGCASS 275 (479)
T ss_dssp TTCCCSEEEE-CTT-SHHHHTTH--HH-HHHHHHHHHH-HHH----------HHCCCC--TTSEEEEECCSHHHHHHHHH
T ss_pred cCCEEeccCC-ccH-HHHHHHHh--ch-HhHHHHHhhh-hhh----------cccccc--CCCEEEEEeeCHHHHHHHHH
Confidence 3568899998 666 88883211 11 1112222222 421 111223 46899999999999999999
Q ss_pred HHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHHH-HHhhhcCC
Q 012596 146 VANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFL-EGISDYVD 224 (460)
Q Consensus 146 La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl-~~i~~~l~ 224 (460)
|...| .+|++|++++.........|. .. .+++++++.+|+|++++....+ + .+....++
T Consensus 276 l~~~G--~~Viv~d~~~~~~~~a~~~g~--------------~~-~~l~ell~~aDiVi~~~~t~~l---I~~~~l~~MK 335 (479)
T 1v8b_A 276 MKGLG--ARVYITEIDPICAIQAVMEGF--------------NV-VTLDEIVDKGDFFITCTGNVDV---IKLEHLLKMK 335 (479)
T ss_dssp HHHHT--CEEEEECSCHHHHHHHHTTTC--------------EE-CCHHHHTTTCSEEEECCSSSSS---BCHHHHTTCC
T ss_pred HHhCc--CEEEEEeCChhhHHHHHHcCC--------------Ee-cCHHHHHhcCCEEEECCChhhh---cCHHHHhhcC
Confidence 99888 899999999876533333331 22 3788999999999999744332 2 23445688
Q ss_pred CCCeEEEeccCCc
Q 012596 225 PGLPFISLSKGLE 237 (460)
Q Consensus 225 ~~~iIV~~~~Gi~ 237 (460)
+++++|++..|-.
T Consensus 336 ~gailiNvgrg~~ 348 (479)
T 1v8b_A 336 NNAVVGNIGHFDD 348 (479)
T ss_dssp TTCEEEECSSTTT
T ss_pred CCcEEEEeCCCCc
Confidence 9999999998744
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-07 Score=97.33 Aligned_cols=135 Identities=13% Similarity=0.020 Sum_probs=89.5
Q ss_pred CceeecCCCCCCCCCccccccccccccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHH
Q 012596 66 DNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAH 145 (460)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~ 145 (460)
.++.++|+|. +.. +++|........ .+...|+. |.+ ..+.++ ..++|+|||+|.||..+|..
T Consensus 234 ~Gilv~n~~~-vn~-sVae~l~r~~~~-------~~~~l~~g---w~~----~~g~~L--~GktVgIIG~G~IG~~vA~~ 295 (494)
T 3d64_A 234 DGRLPFPAFN-VND-SVTKSKFDNLYG-------CRESLVDG---IKR----ATDVMI--AGKIAVVAGYGDVGKGCAQS 295 (494)
T ss_dssp TTCCCSCEEE-CTT-SHHHHHHHHHHH-------HHTTHHHH---HHH----HHCCCC--TTCEEEEECCSHHHHHHHHH
T ss_pred CCCEEEECCC-ccH-HHHHHHHhhhHh-------hhhhhhhh---hhh----cccccc--CCCEEEEEccCHHHHHHHHH
Confidence 3568999998 666 898843221100 11222221 321 112223 46899999999999999999
Q ss_pred HHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCC
Q 012596 146 VANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDP 225 (460)
Q Consensus 146 La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~ 225 (460)
|...| .+|++|++++.........|. .. .+++++++.+|+|++++....+- -.+....+++
T Consensus 296 l~~~G--~~V~v~d~~~~~~~~a~~~G~--------------~~-~~l~ell~~aDiVi~~~~t~~lI--~~~~l~~MK~ 356 (494)
T 3d64_A 296 LRGLG--ATVWVTEIDPICALQAAMEGY--------------RV-VTMEYAADKADIFVTATGNYHVI--NHDHMKAMRH 356 (494)
T ss_dssp HHTTT--CEEEEECSCHHHHHHHHTTTC--------------EE-CCHHHHTTTCSEEEECSSSSCSB--CHHHHHHCCT
T ss_pred HHHCC--CEEEEEeCChHhHHHHHHcCC--------------Ee-CCHHHHHhcCCEEEECCCccccc--CHHHHhhCCC
Confidence 99777 999999999875433223231 22 37889999999999998543321 1234566788
Q ss_pred CCeEEEeccCCc
Q 012596 226 GLPFISLSKGLE 237 (460)
Q Consensus 226 ~~iIV~~~~Gi~ 237 (460)
+++||++..|-.
T Consensus 357 gAilINvgrg~v 368 (494)
T 3d64_A 357 NAIVCNIGHFDS 368 (494)
T ss_dssp TEEEEECSSSSC
T ss_pred CcEEEEcCCCcc
Confidence 999999998744
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=87.76 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=64.2
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
|++++||+|||+|.||..++..|.+.. +.+|+ ++++++++++.+.+.. ++...+|.+++++ ++
T Consensus 1 M~~~~rvgiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~-------------g~~~~~~~~~~l~~~~~ 66 (344)
T 3euw_A 1 MSLTLRIALFGAGRIGHVHAANIAANP-DLELVVIADPFIEGAQRLAEAN-------------GAEAVASPDEVFARDDI 66 (344)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHTT-------------TCEEESSHHHHTTCSCC
T ss_pred CCCceEEEEECCcHHHHHHHHHHHhCC-CcEEEEEECCCHHHHHHHHHHc-------------CCceeCCHHHHhcCCCC
Confidence 445689999999999999999998863 26766 8999999888776641 1356678999887 79
Q ss_pred cEEEEccchhcHHHHHHHhh
Q 012596 201 DYCLHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~ 220 (460)
|+|++|+|.....+++....
T Consensus 67 D~V~i~tp~~~h~~~~~~al 86 (344)
T 3euw_A 67 DGIVIGSPTSTHVDLITRAV 86 (344)
T ss_dssp CEEEECSCGGGHHHHHHHHH
T ss_pred CEEEEeCCchhhHHHHHHHH
Confidence 99999999887666555443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=76.19 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=63.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hhh-cCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KTA-LLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea-~~~aDi 202 (460)
+++|.|+|+|.+|..++..|.+.| ++|++++++++.++.+.+.+....+ .+. ++. .++ +.++|+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~~~~~~~~~~~~~~~~~-gd~---------~~~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKSKEKIELLEDEGFDAVI-ADP---------TDESFYRSLDLEGVSA 73 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHTTCEEEE-CCT---------TCHHHHHHSCCTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCCCcEEE-CCC---------CCHHHHHhCCcccCCE
Confidence 578999999999999999999999 9999999999999888776532111 010 122 121 468999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||+++++......+-...+.+.. ..++...
T Consensus 74 vi~~~~~~~~n~~~~~~a~~~~~-~~iia~~ 103 (141)
T 3llv_A 74 VLITGSDDEFNLKILKALRSVSD-VYAIVRV 103 (141)
T ss_dssp EEECCSCHHHHHHHHHHHHHHCC-CCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHHhCC-ceEEEEE
Confidence 99999966544433333333333 3344433
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=75.80 Aligned_cols=95 Identities=11% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hh-hcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~aDi 202 (460)
..+|.|+|+|.+|..+|..|.+.| ++|+++++++++++.+.+.|....+ .+. ++. .+ .++++|+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~~~~~~~~~g~~~i~-gd~---------~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRTRVDELRERGVRAVL-GNA---------ANEEIMQLAHLECAKW 74 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHTTCEEEE-SCT---------TSHHHHHHTTGGGCSE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHhcCcccCCE
Confidence 468999999999999999999999 9999999999999988876542111 110 122 12 1468999
Q ss_pred EEEccchhcHHH-HHHHhhhcCCCCCeEEEecc
Q 012596 203 CLHAMPVQFSSS-FLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 203 VilaVp~~~~~~-vl~~i~~~l~~~~iIV~~~~ 234 (460)
||++++...... ++..+.. +.++..+|...+
T Consensus 75 vi~~~~~~~~n~~~~~~a~~-~~~~~~iiar~~ 106 (140)
T 3fwz_A 75 LILTIPNGYEAGEIVASARA-KNPDIEIIARAH 106 (140)
T ss_dssp EEECCSCHHHHHHHHHHHHH-HCSSSEEEEEES
T ss_pred EEEECCChHHHHHHHHHHHH-HCCCCeEEEEEC
Confidence 999999765433 4443333 334556665554
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=4.2e-07 Score=90.43 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
+++||+|||+|.||.++|..|+..| + +|++||+++++++..... +... +. ..+..+..++|. +++++||+
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~--~~~v~L~Di~~~~~~g~~~dl~~~~~-~~---~~~~~v~~t~d~-~a~~~aDi 78 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKE--LGDVVLFDIAEGTPQGKGLDIAESSP-VD---GFDAKFTGANDY-AAIEGADV 78 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSHHHHHHHHHHHHHH-HH---TCCCCEEEESSG-GGGTTCSE
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCchhHHHHHHHHhchhh-hc---CCCCEEEEeCCH-HHHCCCCE
Confidence 5689999999999999999999998 6 999999998765422111 1000 00 012346667777 67899999
Q ss_pred EEEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 203 CLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 203 VilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
||++.... .+.++.+.+.++. ++.+++..+|-+
T Consensus 79 VIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPv 127 (324)
T 3gvi_A 79 VIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPL 127 (324)
T ss_dssp EEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred EEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCc
Confidence 99986421 1344455666664 678888888743
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.1e-07 Score=82.90 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=69.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil 205 (460)
|||.|+|+|.+|..+|..|.+.| ++|+++++++++++.+.+. +... +..+..-+ ..+.++ ++++|+||+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g--~~v~vid~~~~~~~~l~~~~~~~~-i~gd~~~~------~~l~~a~i~~ad~vi~ 71 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRK--YGVVIINKDRELCEEFAKKLKATI-IHGDGSHK------EILRDAEVSKNDVVVI 71 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHHSSSEE-EESCTTSH------HHHHHHTCCTTCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHcCCeE-EEcCCCCH------HHHHhcCcccCCEEEE
Confidence 68999999999999999999999 9999999999998887653 3211 11110000 012232 678999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+++++....++..+...+.+...+|...++.
T Consensus 72 ~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~ 102 (218)
T 3l4b_C 72 LTPRDEVNLFIAQLVMKDFGVKRVVSLVNDP 102 (218)
T ss_dssp CCSCHHHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred ecCCcHHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence 9998877666655555444455666655533
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.42 E-value=3e-07 Score=80.18 Aligned_cols=85 Identities=9% Similarity=0.145 Sum_probs=63.8
Q ss_pred CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+..+|+|||+ |.||..++.+|.+.| ++|+.++++.+.+ .++.+..+++++.+.+|
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G--~~V~~vnp~~~~i-------------------~G~~~~~s~~el~~~vD 71 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKG--FEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVD 71 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTT--CEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCC
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCC--CEEEEeCCCCCeE-------------------CCeeecCCHHHhCCCCC
Confidence 5689999999 999999999999999 7766666543111 13455668888878899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
++++++|...+.++++++.+ ...+.+++..
T Consensus 72 lvii~vp~~~v~~v~~~~~~-~g~~~i~~~~ 101 (138)
T 1y81_A 72 VIVFVVPPKVGLQVAKEAVE-AGFKKLWFQP 101 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred EEEEEeCHHHHHHHHHHHHH-cCCCEEEEcC
Confidence 99999999889999888766 3444454443
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-06 Score=91.12 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=59.9
Q ss_pred CCCeEEEECcchH--HHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSF--GTAMAAHVANKK-SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~m--G~~~A~~La~~G-~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
+.|||+|||+|.| |..++..|+... ...+|++||++++.++.+...+.. +.. .+.++.+++|.++++++||+
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~---l~~--~~~~I~~TtD~~eAl~dADf 78 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNH---SGN--GRWRYEAVSTLKKALSAADI 78 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTT---STT--SCEEEEEESSHHHHHTTCSE
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHH---Hhc--cCCeEEEECCHHHHhcCCCE
Confidence 4589999999995 789999888632 112899999999887766543321 222 45568889999999999999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||++++
T Consensus 79 VI~air 84 (450)
T 3fef_A 79 VIISIL 84 (450)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 999996
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.6e-07 Score=73.85 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=67.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+|+|+|+|+|.||..++..|.+.| .++|++++|++++.+.+...+...... + +.-.++..++++++|+||.+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~~~~~~~~~~~~~~~~~~-d------~~~~~~~~~~~~~~d~vi~~ 76 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHDLAALAVLNRMGVATKQV-D------AKDEAGLAKALGGFDAVISA 76 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESCHHHHHHHHTTTCEEEEC-C------TTCHHHHHHHTTTCSEEEEC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhCCCcEEEe-c------CCCHHHHHHHHcCCCEEEEC
Confidence 579999999999999999999987 368999999998888776433211100 0 00012345567899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|......+++...+ .+...++++.
T Consensus 77 ~~~~~~~~~~~~~~~---~g~~~~~~~~ 101 (118)
T 3ic5_A 77 APFFLTPIIAKAAKA---AGAHYFDLTE 101 (118)
T ss_dssp SCGGGHHHHHHHHHH---TTCEEECCCS
T ss_pred CCchhhHHHHHHHHH---hCCCEEEecC
Confidence 997766666555433 3556666553
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=86.24 Aligned_cols=93 Identities=10% Similarity=0.130 Sum_probs=67.3
Q ss_pred cCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 125 ERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|+++||||||+|.||.. ++..|.+.. +.+++ ++++++++++++.+. |. ...+|.+++++++|
T Consensus 4 M~~~~igiIG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~~~--------------~~~~~~~~ll~~~D 68 (308)
T 3uuw_A 4 MKNIKMGMIGLGSIAQKAYLPILTKSE-RFEFVGAFTPNKVKREKICSDYRI--------------MPFDSIESLAKKCD 68 (308)
T ss_dssp -CCCEEEEECCSHHHHHHTHHHHTSCS-SSEEEEEECSCHHHHHHHHHHHTC--------------CBCSCHHHHHTTCS
T ss_pred cccCcEEEEecCHHHHHHHHHHHHhCC-CeEEEEEECCCHHHHHHHHHHcCC--------------CCcCCHHHHHhcCC
Confidence 45689999999999996 888887643 26776 899999988887764 32 12468889888999
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|++|+|.....+++....+ .|..++ +-|-+
T Consensus 69 ~V~i~tp~~~h~~~~~~al~---~gk~vl-~EKP~ 99 (308)
T 3uuw_A 69 CIFLHSSTETHYEIIKILLN---LGVHVY-VDKPL 99 (308)
T ss_dssp EEEECCCGGGHHHHHHHHHH---TTCEEE-ECSSS
T ss_pred EEEEeCCcHhHHHHHHHHHH---CCCcEE-EcCCC
Confidence 99999998876666554433 344433 44433
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=84.46 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=69.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+|||+|||+|.||..++..|+..| + +|.++|+++++++.....-...... ...+..+..++|. +++++||+||+
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g--~~~v~L~Di~~~~~~g~~~dl~~~~~~--~~~~~~i~~t~d~-~a~~~aD~Vi~ 76 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKE--LGDIVLLDIVEGVPQGKALDLYEASPI--EGFDVRVTGTNNY-ADTANSDVIVV 76 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSSSSHHHHHHHHHHTTHHH--HTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CCeEEEEeCCccHHHHHHHhHHHhHhh--cCCCeEEEECCCH-HHHCCCCEEEE
Confidence 479999999999999999999988 5 8999999887665332210000000 0012346666787 67899999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++... ...++.+.+.++. ++.+++..+|-+
T Consensus 77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv 122 (309)
T 1ur5_A 77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPL 122 (309)
T ss_dssp CCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCch
Confidence 97421 1234556666664 677877777743
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.3e-07 Score=86.85 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=68.1
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (460)
+|+|||+|.||.+++..|.+.| ++|++|+|+.++++.+.+... .. .++++++ +++|+||+|+|
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g--~~v~v~~r~~~~~~~l~~~~~-------------~~-~~~~~~~-~~~Divi~~tp 180 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAG--LEVWVWNRTPQRALALAEEFG-------------LR-AVPLEKA-REARLLVNATR 180 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHHT-------------CE-ECCGGGG-GGCSEEEECSS
T ss_pred eEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhc-------------cc-hhhHhhc-cCCCEEEEccC
Confidence 8999999999999999999998 799999999988877765411 11 2466777 89999999999
Q ss_pred hhcHH---HHHHHhhhcCCCCCeEEEeccC
Q 012596 209 VQFSS---SFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 209 ~~~~~---~vl~~i~~~l~~~~iIV~~~~G 235 (460)
..... .++. .+.++++++++++..+
T Consensus 181 ~~~~~~~~~~l~--~~~l~~g~~viD~~~~ 208 (263)
T 2d5c_A 181 VGLEDPSASPLP--AELFPEEGAAVDLVYR 208 (263)
T ss_dssp TTTTCTTCCSSC--GGGSCSSSEEEESCCS
T ss_pred CCCCCCCCCCCC--HHHcCCCCEEEEeecC
Confidence 76422 2221 4567788999998754
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-07 Score=91.19 Aligned_cols=99 Identities=12% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|+|||+|.||..++..|.......+|++|+|++++++++.+.-.. ..+ ..+..+++++++++++|+|++|
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~---~~g----~~~~~~~~~~eav~~aDiVi~a 201 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE---YSG----LTIRRASSVAEAVKGVDIITTV 201 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT---CTT----CEEEECSSHHHHHTTCSEEEEC
T ss_pred CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh---ccC----ceEEEeCCHHHHHhcCCEEEEe
Confidence 579999999999999998886421126899999999999888765211 001 1245567899999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+.....++. .+.+++|+.|+.+..
T Consensus 202 Tps~~~~pvl~--~~~l~~G~~V~~vgs 227 (350)
T 1x7d_A 202 TADKAYATIIT--PDMLEPGMHLNAVGG 227 (350)
T ss_dssp CCCSSEEEEEC--GGGCCTTCEEEECSC
T ss_pred ccCCCCCceec--HHHcCCCCEEEECCC
Confidence 99763222221 256788988887764
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-06 Score=84.82 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=68.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH---HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV---CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~---~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
++||+|||+|.||..+|..|+..|...+|.++|++++. +..+... . ...+..+.|. +++++||+|
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~----------~-~~~i~~t~d~-~~l~~aD~V 81 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIF----------N-LPNVEISKDL-SASAHSKVV 81 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHH----------T-CTTEEEESCG-GGGTTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhh----------c-CCCeEEeCCH-HHHCCCCEE
Confidence 57999999999999999999999822289999998751 1122211 0 1256777788 668999999
Q ss_pred EEcc-------------ch--hcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 204 LHAM-------------PV--QFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 204 ilaV-------------p~--~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
|++. .. ....++++++.++. ++.+++..+|-
T Consensus 82 i~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP 127 (303)
T 2i6t_A 82 IFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQP 127 (303)
T ss_dssp EECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSS
T ss_pred EEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCCh
Confidence 9997 21 12566777777776 67888888883
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-06 Score=86.67 Aligned_cols=81 Identities=15% Similarity=0.265 Sum_probs=62.2
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhc--CC
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTAL--LG 199 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~--~~ 199 (460)
|++++||+|||+|.||..++..|.+.. +.+|+ ++|+++++++.+.+. |. ...+|.++++ .+
T Consensus 2 M~~~~~vgiiG~G~~g~~~~~~l~~~~-~~~lvav~d~~~~~~~~~~~~~g~--------------~~~~~~~~~l~~~~ 66 (354)
T 3db2_A 2 MYNPVGVAAIGLGRWAYVMADAYTKSE-KLKLVTCYSRTEDKREKFGKRYNC--------------AGDATMEALLARED 66 (354)
T ss_dssp CCCCEEEEEECCSHHHHHHHHHHTTCS-SEEEEEEECSSHHHHHHHHHHHTC--------------CCCSSHHHHHHCSS
T ss_pred CCCcceEEEEccCHHHHHHHHHHHhCC-CcEEEEEECCCHHHHHHHHHHcCC--------------CCcCCHHHHhcCCC
Confidence 445689999999999999999998762 26755 889999988877654 32 2246888888 57
Q ss_pred CcEEEEccchhcHHHHHHHh
Q 012596 200 ADYCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i 219 (460)
+|+|++|+|.....+++...
T Consensus 67 ~D~V~i~tp~~~h~~~~~~a 86 (354)
T 3db2_A 67 VEMVIITVPNDKHAEVIEQC 86 (354)
T ss_dssp CCEEEECSCTTSHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHH
Confidence 99999999987765555443
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=85.94 Aligned_cols=102 Identities=11% Similarity=0.108 Sum_probs=64.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+|||+|||+|.+|.+++..|+..|.-.+|.++|.++++++..... .....+. ..+++..+..+++++||+||+
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~------~~~~i~~~~~~a~~~aDvVii 80 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFM------GQMSLYAGDYSDVKDCDVIVV 80 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCT------TCEEEC--CGGGGTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhc------CCeEEEECCHHHhCCCCEEEE
Confidence 589999999999999999999988323899999998654432211 1000111 223333233566899999999
Q ss_pred ccchhc----------------HHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQF----------------SSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~----------------~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+++... +.++.+.+.++ .++.+++..+|-
T Consensus 81 ~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (318)
T 1y6j_A 81 TAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNP 125 (318)
T ss_dssp CCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSS
T ss_pred cCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 987422 35556667776 467777777763
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-06 Score=81.41 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=62.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V-~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil 205 (460)
|||+|||+|.||..++..|.+.| ++| .+||+++. .+ . .++|+++++ .++|+|++
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g--~~lv~v~d~~~~-~~-------------------~--~~~~~~~l~~~~~DvVv~ 56 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNG--FEIAAILDVRGE-HE-------------------K--MVRGIDEFLQREMDVAVE 56 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEECSSCC-CT-------------------T--EESSHHHHTTSCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhcCC--CEEEEEEecCcc-hh-------------------h--hcCCHHHHhcCCCCEEEE
Confidence 68999999999999999999877 887 68998741 10 0 346888888 68999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|+|.....+++... ++.|..+|+.+.+.
T Consensus 57 ~~~~~~~~~~~~~~---l~~G~~vv~~~~~~ 84 (236)
T 2dc1_A 57 AASQQAVKDYAEKI---LKAGIDLIVLSTGA 84 (236)
T ss_dssp CSCHHHHHHHHHHH---HHTTCEEEESCGGG
T ss_pred CCCHHHHHHHHHHH---HHCCCcEEEECccc
Confidence 99987666655433 44678888876644
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-06 Score=85.84 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++|||+|||+|.||.++|..|+..|.. +|+++|+++++++.....-.....+. ..+..+..+++. +++++||+||+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~--~~~~~v~~t~d~-~a~~~aDvVIi 79 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIE--GVDFKVRGTNDY-KDLENSDVVIV 79 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHH--TCCCCEEEESCG-GGGTTCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhc--CCCcEEEEcCCH-HHHCCCCEEEE
Confidence 568999999999999999999998832 99999999876543221100000000 012245556665 57899999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+.... .+.++.+.+.++. ++.+++..+|-+
T Consensus 80 ~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 125 (321)
T 3p7m_A 80 TAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPL 125 (321)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred cCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCch
Confidence 86321 1344455666665 677888777643
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.6e-06 Score=84.44 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=63.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+++||+|||+|.||..++..|.+...+.+++ ++|+++++++++.+.. ++..++|.+++++ ++|+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~D~ 78 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT-------------GARGHASLTDMLAQTDADI 78 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH-------------CCEEESCHHHHHHHCCCSE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc-------------CCceeCCHHHHhcCCCCCE
Confidence 4679999999999999999999872126755 8899999888776642 1356678988876 7999
Q ss_pred EEEccchhcHHHHHHHh
Q 012596 203 CLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i 219 (460)
|++|+|.....+++...
T Consensus 79 V~i~tp~~~h~~~~~~a 95 (354)
T 3q2i_A 79 VILTTPSGLHPTQSIEC 95 (354)
T ss_dssp EEECSCGGGHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHH
Confidence 99999988766655444
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.9e-06 Score=84.09 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=68.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+++||+|||+|.||.++|..|+..|...+|+++|+++++++.....-.. ..+ .+...+++..+..+++++||+||+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~--~~~--~~~~~~~i~~~~~~al~~aDvVii 80 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH--GKV--FAPKPVDIWHGDYDDCRDADLVVI 80 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH--HTT--SSSSCCEEEECCGGGTTTCSEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHH--Hhh--hcCCCeEEEcCcHHHhCCCCEEEE
Confidence 3579999999999999999999887435899999998755432211000 000 111123333344567899999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+.+.. ...++++.+.++. ++..++..+|-+
T Consensus 81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv 126 (316)
T 1ldn_A 81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPV 126 (316)
T ss_dssp CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCch
Confidence 97532 1344555666665 567777777743
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-06 Score=82.39 Aligned_cols=127 Identities=15% Similarity=0.205 Sum_probs=79.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+||||+|+|+|.||..++..+.+.+ ++++ +++++.+. .. ++.+++|+++++ ++|+||
T Consensus 2 ~MmkI~ViGaGrMG~~i~~~l~~~~--~eLva~~d~~~~~-----~~--------------gv~v~~dl~~l~-~~DVvI 59 (243)
T 3qy9_A 2 ASMKILLIGYGAMNQRVARLAEEKG--HEIVGVIENTPKA-----TT--------------PYQQYQHIADVK-GADVAI 59 (243)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEECSSCC-------C--------------CSCBCSCTTTCT-TCSEEE
T ss_pred CceEEEEECcCHHHHHHHHHHHhCC--CEEEEEEecCccc-----cC--------------CCceeCCHHHHh-CCCEEE
Confidence 5799999999999999999999987 4655 47776541 11 233456787777 999998
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
-++....+.+.++ ++.+..+|..++|+..+.. +.+.+... ...++..|++..-+.-
T Consensus 60 Dft~p~a~~~~~~-----l~~g~~vVigTTG~s~e~~----~~l~~aa~----~~~v~~a~N~S~Gv~l----------- 115 (243)
T 3qy9_A 60 DFSNPNLLFPLLD-----EDFHLPLVVATTGEKEKLL----NKLDELSQ----NMPVFFSANMSYGVHA----------- 115 (243)
T ss_dssp ECSCHHHHHHHHT-----SCCCCCEEECCCSSHHHHH----HHHHHHTT----TSEEEECSSCCHHHHH-----------
T ss_pred EeCChHHHHHHHH-----HhcCCceEeCCCCCCHHHH----HHHHHHHh----cCCEEEECCccHHHHH-----------
Confidence 5554444433332 5667778888888865432 23333321 1456888887642200
Q ss_pred CHHHHHHHHHHHhc
Q 012596 285 DRKLANAVQQLLAS 298 (460)
Q Consensus 285 d~~~~~~l~~lL~~ 298 (460)
-....+.+.++|..
T Consensus 116 ~~~~~~~aa~~l~~ 129 (243)
T 3qy9_A 116 LTKILAAAVPLLDD 129 (243)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCC
Confidence 02445666777764
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-06 Score=82.88 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=62.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiV 203 (460)
++||+|||+|.||..++..|.+.. +.+|+ ++|+++++++.+.+.. ++. .++.+++++ ++|+|
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~~~~~-------------~~~-~~~~~~~l~~~~~D~V 67 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNA-DARLVAVADAFPAAAEAIAGAY-------------GCE-VRTIDAIEAAADIDAV 67 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHT-------------TCE-ECCHHHHHHCTTCCEE
T ss_pred ceEEEEECCCHHHHHHHHHHhhCC-CcEEEEEECCCHHHHHHHHHHh-------------CCC-cCCHHHHhcCCCCCEE
Confidence 579999999999999999999853 26766 7999999888877642 123 568888876 79999
Q ss_pred EEccchhcHHHHHHHhh
Q 012596 204 LHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~ 220 (460)
++|+|.....+++....
T Consensus 68 ~i~tp~~~h~~~~~~al 84 (331)
T 4hkt_A 68 VICTPTDTHADLIERFA 84 (331)
T ss_dssp EECSCGGGHHHHHHHHH
T ss_pred EEeCCchhHHHHHHHHH
Confidence 99999887666554443
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.7e-06 Score=82.95 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----INEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~----l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
..|||+|||+|.||.++|..|+..|.-.+|+++|+++++++. +.. + .+ ++ +.++.++++..+++++||
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~-~-~~-~~-----~~~v~i~~~~~~a~~~aD 75 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNH-G-KA-FA-----PQPVKTSYGTYEDCKDAD 75 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHH-T-GG-GS-----SSCCEEEEECGGGGTTCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHh-c-cc-cc-----cCCeEEEeCcHHHhCCCC
Confidence 368999999999999999999998832389999999887665 333 1 11 11 112333333345689999
Q ss_pred EEEEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+||++.... .+.++.+.+.++ .++.+++..+|-+
T Consensus 76 vVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPv 125 (326)
T 3pqe_A 76 IVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPV 125 (326)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred EEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChH
Confidence 999987421 123344555555 3677888888743
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.3e-06 Score=71.66 Aligned_cols=96 Identities=11% Similarity=0.166 Sum_probs=62.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hhh-cCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KTA-LLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea-~~~aDi 202 (460)
+++|.|+|+|.+|..++..|.+.| ++|++++++++.++.+.+.+... ...+ ..+. .++ +.++|+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~~~~~~-~~~d---------~~~~~~l~~~~~~~~d~ 73 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYATHA-VIAN---------ATEENELLSLGIRNFEY 73 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHTTTTTCSEE-EECC---------TTCHHHHHTTTGGGCSE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhCCEE-EEeC---------CCCHHHHHhcCCCCCCE
Confidence 467999999999999999999998 89999999988776554433210 0000 0122 222 567999
Q ss_pred EEEccchh-cHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 203 CLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 203 VilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
||++++.. .....+......+.+. .+|..+++
T Consensus 74 vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~ 106 (144)
T 2hmt_A 74 VIVAIGANIQASTLTTLLLKELDIP-NIWVKAQN 106 (144)
T ss_dssp EEECCCSCHHHHHHHHHHHHHTTCS-EEEEECCS
T ss_pred EEECCCCchHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 99999975 4333333333334454 55555543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-06 Score=83.50 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=69.7
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|++.|||+|||+|.+|.+++..|+..+.-.+|.++|+++++++..... +.. .+. ..+.+..+..+++++||
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~-~~~------~~~~v~~~~~~a~~~aD 74 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ-AFT------APKKIYSGEYSDCKDAD 74 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG-GGS------CCCEEEECCGGGGTTCS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH-Hhc------CCeEEEECCHHHhCCCC
Confidence 445689999999999999999999887434899999998776643221 111 111 12333334456789999
Q ss_pred EEEEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+||++.+.. .+.++.+.+.++ .++..++..+|-+
T Consensus 75 vVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 124 (318)
T 1ez4_A 75 LVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPV 124 (318)
T ss_dssp EEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcH
Confidence 999997532 133344555555 4677777777744
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-06 Score=84.56 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=68.5
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC--HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~--~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|+.+||+|||+|.||..+|..|+..| + +|++||++ +++++.....-.....+ ......+..+++. +++++||
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g--~~~v~l~D~~~~~~~~~g~a~dl~~~~~~--~~~~~~i~~t~d~-~a~~~aD 80 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKE--LADVVLVDIPQLENPTKGKALDMLEASPV--QGFDANIIGTSDY-ADTADSD 80 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCGGGHHHHHHHHHHHHHHHHH--HTCCCCEEEESCG-GGGTTCS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeccchHHHHHHhhhhHHHhhhh--ccCCCEEEEcCCH-HHhCCCC
Confidence 34579999999999999999999998 6 99999999 44443222110000000 0012345666665 4589999
Q ss_pred EEEEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+||++.... .++++.+.+.++. ++.+++..+|-+
T Consensus 81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsNPv 130 (315)
T 3tl2_A 81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTNPV 130 (315)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCChH
Confidence 999997321 1344455566654 677888888743
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.3e-06 Score=82.24 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=68.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
++|||+|||+|.+|.+++..|+..|.-.+|.++|+++++++.... .+. ..++ ...+.+..+..+++++||+|
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~-~~~~-----~~~~~v~~~~~~a~~~aDvV 78 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHA-TPYS-----PTTVRVKAGEYSDCHDADLV 78 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHH-GGGS-----SSCCEEEECCGGGGTTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhh-hhhc-----CCCeEEEeCCHHHhCCCCEE
Confidence 457999999999999999999988743489999999876553211 111 1111 11223333446678999999
Q ss_pred EEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|++++.. .+.++.+.+.++ .++..++..+|-+
T Consensus 79 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv 126 (317)
T 3d0o_A 79 VICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPV 126 (317)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcH
Confidence 9998532 133444556666 5677777777643
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.1e-07 Score=78.87 Aligned_cols=89 Identities=9% Similarity=0.003 Sum_probs=64.2
Q ss_pred hccCCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 123 ILERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 123 ~~~~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
++.+..+|+|||+ |.||..++.+|.+.| ++|+.+++... |.. + .++.+..+++++.+
T Consensus 9 ll~~p~~IavIGas~~~g~~G~~~~~~L~~~G--~~v~~vnp~~~--------g~~--------i-~G~~~~~sl~el~~ 69 (145)
T 2duw_A 9 ILTSTRTIALVGASDKPDRPSYRVMKYLLDQG--YHVIPVSPKVA--------GKT--------L-LGQQGYATLADVPE 69 (145)
T ss_dssp HHHHCCCEEEESCCSCTTSHHHHHHHHHHHHT--CCEEEECSSST--------TSE--------E-TTEECCSSTTTCSS
T ss_pred HHhCCCEEEEECcCCCCCChHHHHHHHHHHCC--CEEEEeCCccc--------ccc--------c-CCeeccCCHHHcCC
Confidence 3433578999999 899999999999999 78776666531 000 0 13455567778777
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEE
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~ 231 (460)
.+|++++++|+..+.++++++.+ ...+.+++.
T Consensus 70 ~~Dlvii~vp~~~v~~v~~~~~~-~g~~~i~i~ 101 (145)
T 2duw_A 70 KVDMVDVFRNSEAAWGVAQEAIA-IGAKTLWLQ 101 (145)
T ss_dssp CCSEEECCSCSTHHHHHHHHHHH-HTCCEEECC
T ss_pred CCCEEEEEeCHHHHHHHHHHHHH-cCCCEEEEc
Confidence 89999999999889999988766 333445543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=4.7e-06 Score=82.93 Aligned_cols=104 Identities=14% Similarity=0.067 Sum_probs=72.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..+||+|||+|.||..+|..|+..|.-.+|+++|+++++++..... +... + .....+..++|+++ +++||+|
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~-~----~~~~~i~~t~d~~~-~~daDiV 93 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL-F----LHTAKIVSGKDYSV-SAGSKLV 93 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG-G----SCCSEEEEESSSCS-CSSCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh-c----ccCCeEEEcCCHHH-hCCCCEE
Confidence 3589999999999999999999988433899999998766543211 1000 1 11234666778876 8999999
Q ss_pred EEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|++.... .+.++.+.+.++ .++.+++..+|-+
T Consensus 94 IitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPv 141 (330)
T 3ldh_A 94 VITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELG 141 (330)
T ss_dssp EECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCcc
Confidence 9985321 244556677777 5788888888743
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.7e-06 Score=86.28 Aligned_cols=92 Identities=11% Similarity=-0.035 Sum_probs=71.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|+|+|.+|..+|..|...| .+|+++++++.........|. .. .+++++++.+|+|++
T Consensus 210 ~GktVgIiG~G~IG~~vA~~Lka~G--a~Viv~D~~p~~a~~A~~~G~--------------~~-~sL~eal~~ADVVil 272 (436)
T 3h9u_A 210 AGKTACVCGYGDVGKGCAAALRGFG--ARVVVTEVDPINALQAAMEGY--------------QV-LLVEDVVEEAHIFVT 272 (436)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EE-CCHHHHTTTCSEEEE
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCChhhhHHHHHhCC--------------ee-cCHHHHHhhCCEEEE
Confidence 4689999999999999999999988 899999999876554444442 22 378999999999998
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+.....+- -.+....++++.+||++.+|-
T Consensus 273 t~gt~~iI--~~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 273 TTGNDDII--TSEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp CSSCSCSB--CTTTGGGCCTTEEEEECSSSG
T ss_pred CCCCcCcc--CHHHHhhcCCCcEEEEeCCCC
Confidence 76654321 124556688999999998864
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.7e-06 Score=83.60 Aligned_cols=81 Identities=11% Similarity=-0.041 Sum_probs=61.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+++||||||+|.||..++..|.+.. +.+|+ ++|+++++++.+.+.... ..+++|.++++. ++|+
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~~~~~~~------------~~~~~~~~~ll~~~~~D~ 70 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESA-QAEVRGIASRRLENAQKMAKELAI------------PVAYGSYEELCKDETIDI 70 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSS-SEEEEEEBCSSSHHHHHHHHHTTC------------CCCBSSHHHHHHCTTCSE
T ss_pred CeEEEEEECchHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHHHcCC------------CceeCCHHHHhcCCCCCE
Confidence 4679999999999999999999853 26766 789999888877765210 023468888876 7999
Q ss_pred EEEccchhcHHHHHHHh
Q 012596 203 CLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i 219 (460)
|++|+|.....+++...
T Consensus 71 V~i~tp~~~h~~~~~~a 87 (330)
T 3e9m_A 71 IYIPTYNQGHYSAAKLA 87 (330)
T ss_dssp EEECCCGGGHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHH
Confidence 99999988766655443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.19 E-value=9e-06 Score=81.42 Aligned_cols=103 Identities=20% Similarity=0.244 Sum_probs=71.9
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----INEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~----l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
++.++||+|||+ |.+|..+|..++..|...+|+++|+++++++. +... . ++ ...+..+++..++++
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~-~----~~----~~~i~~t~d~~~al~ 75 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-G----FE----GLNLTFTSDIKEALT 75 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH-C----CT----TCCCEEESCHHHHHT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC-c----CC----CCceEEcCCHHHHhC
Confidence 456789999998 99999999999988854589999999876554 3321 1 11 124667788888899
Q ss_pred CCcEEEEccchh----------------cHHHHHHHhhhcCCCCCe-EEEeccCC
Q 012596 199 GADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLP-FISLSKGL 236 (460)
Q Consensus 199 ~aDiVilaVp~~----------------~~~~vl~~i~~~l~~~~i-IV~~~~Gi 236 (460)
+||+||++.-.. .+.++.+.+.++. ++.+ ++..+|-+
T Consensus 76 dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPv 129 (343)
T 3fi9_A 76 DAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPA 129 (343)
T ss_dssp TEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSH
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCch
Confidence 999999986311 1334445566665 5564 77777643
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.5e-06 Score=81.35 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=72.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiV 203 (460)
++||+|||+|.||..++..|.+.. +.+++ ++|+++++++.+.+.... ....+|.+++++ ++|+|
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~~~~~~~------------~~~~~~~~~ll~~~~~D~V 68 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMID-DAILYAISDVREDRLREMKEKLGV------------EKAYKDPHELIEDPNVDAV 68 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGST-TEEEEEEECSCHHHHHHHHHHHTC------------SEEESSHHHHHHCTTCCEE
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCC-CcEEEEEECCCHHHHHHHHHHhCC------------CceeCCHHHHhcCCCCCEE
Confidence 479999999999999999998753 26766 789999988877664210 135678888877 79999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCC--ccchhhhHHHHHHH
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL--ELNTLRMMSQIIPQ 250 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi--~~~~~~~l~e~l~~ 250 (460)
++|+|.....+++....+ .|..++ +-|-+ ..+..+.+.+..++
T Consensus 69 ~i~tp~~~h~~~~~~al~---~gk~v~-~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 69 LVCSSTNTHSELVIACAK---AKKHVF-CEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp EECSCGGGHHHHHHHHHH---TTCEEE-EESCSCSCHHHHHHHHHHHHH
T ss_pred EEcCCCcchHHHHHHHHh---cCCeEE-EECCCCCCHHHHHHHHHHHHH
Confidence 999998876665544433 344443 44433 33333344444433
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-06 Score=86.36 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=70.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC--CCCCCCceE---------EeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP--EQKLPENVI---------ATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~--~~~l~~~i~---------a~~~~~e 195 (460)
..||+|||+|.||..+++.+...| .+|++||+++++.+.+.+.|.....++ ........+ ...++++
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e 261 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED 261 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence 479999999999999999999988 899999999988888877554211110 000000000 0124667
Q ss_pred hcCCCcEEEEcc--chhcHHH-HHHHhhhcCCCCCeEEEec
Q 012596 196 ALLGADYCLHAM--PVQFSSS-FLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 196 a~~~aDiVilaV--p~~~~~~-vl~~i~~~l~~~~iIV~~~ 233 (460)
+++++|+||.++ |...... +-++..+.++++.+||+++
T Consensus 262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 889999999986 4322111 1245556678899999986
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=80.76 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=61.7
Q ss_pred cCCCeEEEECcchHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 125 ERTNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~-~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
|+++||||||+|.||. .++..|.+.. +.+|+ ++++++++++++.+.. ++...+|.+++++ +.
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~-------------g~~~~~~~~~ll~~~~~ 90 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEP-LTEVTAIASRRWDRAKRFTERF-------------GGEPVEGYPALLERDDV 90 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCT-TEEEEEEEESSHHHHHHHHHHH-------------CSEEEESHHHHHTCTTC
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCC-CeEEEEEEcCCHHHHHHHHHHc-------------CCCCcCCHHHHhcCCCC
Confidence 4568999999999998 7899998763 26765 8899998888776642 1233468888876 58
Q ss_pred cEEEEccchhcHHHHHHHhh
Q 012596 201 DYCLHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~ 220 (460)
|+|++|+|.....+++....
T Consensus 91 D~V~i~tp~~~h~~~~~~al 110 (350)
T 3rc1_A 91 DAVYVPLPAVLHAEWIDRAL 110 (350)
T ss_dssp SEEEECCCGGGHHHHHHHHH
T ss_pred CEEEECCCcHHHHHHHHHHH
Confidence 99999999887666554443
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-05 Score=79.32 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=61.6
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La-~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi 202 (460)
++||+|||+|.||..++..|. +.. +.+|+ ++++++++++++.+... ....+.+|.++++++ +|+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~-~~~l~av~d~~~~~~~~~~~~~g-----------~~~~~~~~~~~ll~~~~~D~ 69 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLS-GAEIVAVTDVNQEAAQKVVEQYQ-----------LNATVYPNDDSLLADENVDA 69 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCS-SEEEEEEECSSHHHHHHHHHHTT-----------CCCEEESSHHHHHHCTTCCE
T ss_pred eEEEEEECccHHHHHHHHHHHhhCC-CcEEEEEEcCCHHHHHHHHHHhC-----------CCCeeeCCHHHHhcCCCCCE
Confidence 479999999999999999998 432 26766 88999998888776421 013566789988765 899
Q ss_pred EEEccchhcHHHHHHHh
Q 012596 203 CLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i 219 (460)
|++|+|.....+++...
T Consensus 70 V~i~tp~~~h~~~~~~a 86 (344)
T 3mz0_A 70 VLVTSWGPAHESSVLKA 86 (344)
T ss_dssp EEECSCGGGHHHHHHHH
T ss_pred EEECCCchhHHHHHHHH
Confidence 99999988766655444
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.8e-06 Score=82.27 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=68.7
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (460)
||+|||+|.||.+++..|+..|. .+|.++|+++++++.....-.....+ ...+..+..+.|. +++++||+||++..
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~--~~~~~~i~~t~d~-~a~~~aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAE--LGVDIRISGSNSY-EDMRGSDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHH--HTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhh--cCCCeEEEECCCH-HHhCCCCEEEEeCC
Confidence 79999999999999999998884 37999999987665322110000000 0012246666776 57899999999965
Q ss_pred hhc----------------HHHHHHHhhhcCCCCCeEEEeccC
Q 012596 209 VQF----------------SSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 209 ~~~----------------~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
... +.++++.+.++. ++..+|..+|-
T Consensus 77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 118 (308)
T 2d4a_B 77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNP 118 (308)
T ss_dssp CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 322 556666777765 67777778873
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.13 E-value=9.1e-06 Score=71.31 Aligned_cols=102 Identities=8% Similarity=0.059 Sum_probs=65.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhh---cCCCccCCCCCCCCceEEeCCHHhh-cCCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEK---HCNCRYFPEQKLPENVIATTDAKTA-LLGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~-~~~~~~l~~~---g~~~~~~~~~~l~~~i~a~~~~~ea-~~~a 200 (460)
..++|.|+|+|.+|..++..|.+.| ++|++++++ +++++.+.+. |.... ..+..- ...+.++ ++++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~~~~~~~~~~~~~~~~~~~i-~gd~~~------~~~l~~a~i~~a 72 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRG--QNVTVISNLPEDDIKQLEQRLGDNADVI-PGDSND------SSVLKKAGIDRC 72 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHCTTCEEE-ESCTTS------HHHHHHHTTTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEECCChHHHHHHHHhhcCCCeEE-EcCCCC------HHHHHHcChhhC
Confidence 4578999999999999999999998 999999997 5656555432 21100 000000 0112333 6789
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|+||++++++.....+....+.+.+...++...++.
T Consensus 73 d~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 73 RAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred CEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 999999998766555544444443445556555433
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-05 Score=80.52 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=68.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+.|||+|||+|.+|.+++..|+..+.-.+|.++|+++++++..... +.. .+. .++.+..+..+++++||+|
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~-~~~------~~~~i~~~~~~a~~~aDvV 80 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL-PFT------SPKKIYSAEYSDAKDADLV 80 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-GGS------CCCEEEECCGGGGGGCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH-Hhc------CCeEEEECCHHHhCCCCEE
Confidence 3589999999999999999999887434899999998776543221 111 111 1233333456678999999
Q ss_pred EEccchhc----------------HHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaVp~~~----------------~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|++..... +.++.+.+.++. ++..++..+|-+
T Consensus 81 ii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv 128 (326)
T 2zqz_A 81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPV 128 (326)
T ss_dssp EECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcH
Confidence 99875321 233444555553 677777777744
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-05 Score=79.43 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=62.1
Q ss_pred CCCeEEEECcchHHHHHHHHHH-hcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La-~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
+++||||||+|.||..++..|. +.. +.+|+ ++|+++++++.+.+. |. .+...+|.+++++ +.
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~-~~~lvav~d~~~~~~~~~a~~~g~------------~~~~~~~~~~ll~~~~~ 88 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVS-GVEVVAVCDIVAGRAQAALDKYAI------------EAKDYNDYHDLINDKDV 88 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCT-TEEEEEEECSSTTHHHHHHHHHTC------------CCEEESSHHHHHHCTTC
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCC-CcEEEEEEeCCHHHHHHHHHHhCC------------CCeeeCCHHHHhcCCCC
Confidence 3579999999999999999998 432 26766 899999888877664 21 1346678988876 58
Q ss_pred cEEEEccchhcHHHHHHHhh
Q 012596 201 DYCLHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~ 220 (460)
|+|++|+|.....+++....
T Consensus 89 D~V~i~tp~~~h~~~~~~al 108 (357)
T 3ec7_A 89 EVVIITASNEAHADVAVAAL 108 (357)
T ss_dssp CEEEECSCGGGHHHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHH
Confidence 99999999887666554443
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-05 Score=78.73 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=69.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..+||+|||+|.||.++|..|+..|.-.+|+++|+++++++..... +.. .+. .++.++++..+++++||+|
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~-~~~------~~~~i~~~~~~a~~~aDiV 80 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL-PFT------SPKKIYSAEYSDAKDADLV 80 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-GGS------CCCEEEECCGGGGTTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh-hhc------CCcEEEECcHHHhcCCCEE
Confidence 3589999999999999999999988423899999998876643321 111 011 1334444445668999999
Q ss_pred EEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|++.... .+.++.+.+.++. ++.+++..+|-+
T Consensus 81 vi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvvtNPv 128 (326)
T 3vku_A 81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPV 128 (326)
T ss_dssp EECCCCC----------------CHHHHHHHHHTTT-CCSEEEECSSSH
T ss_pred EECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEccCch
Confidence 9986421 1344555566654 577888887743
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=78.88 Aligned_cols=101 Identities=22% Similarity=0.217 Sum_probs=67.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|.+|.+++..|+..+.-.+|.++|+++++++..... +.. .+. .+..+.. ++ .+++++||+||+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~-~~~----~~~~v~~-~~-~~a~~~aD~Vii 73 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT-PFA----HPVWVWA-GS-YGDLEGARAVVL 73 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG-GGS----CCCEEEE-CC-GGGGTTEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH-hhc----CCeEEEE-CC-HHHhCCCCEEEE
Confidence 69999999999999999999887546899999998776643221 111 111 1123333 34 567899999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+.... .+.++.+.+.++ .++..++..+|-+
T Consensus 74 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 119 (310)
T 2xxj_A 74 AAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPV 119 (310)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCch
Confidence 87532 133444555565 4677777777743
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.2e-06 Score=82.84 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=65.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----cCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-----g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
.++|+|||+|.||..++..|.+.....+|++|+|+ +.+++.++ |. .+.+. +++++++++|
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~------------~~~~~-~~~eav~~aD 185 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGV------------PARMA-APADIAAQAD 185 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTS------------CEEEC-CHHHHHHHCS
T ss_pred CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCC------------eEEEe-CHHHHHhhCC
Confidence 47899999999999999999874212689999999 44444331 22 24455 8999999999
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|++|+|+.. .++. .+.+++|+.|+++..
T Consensus 186 IVi~aT~s~~--pvl~--~~~l~~G~~V~~vGs 214 (313)
T 3hdj_A 186 IVVTATRSTT--PLFA--GQALRAGAFVGAIGS 214 (313)
T ss_dssp EEEECCCCSS--CSSC--GGGCCTTCEEEECCC
T ss_pred EEEEccCCCC--cccC--HHHcCCCcEEEECCC
Confidence 9999999752 1221 356888998888753
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=80.86 Aligned_cols=99 Identities=18% Similarity=0.277 Sum_probs=78.3
Q ss_pred cchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH------HHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012596 120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 120 ~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~------~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
+.+++ +.+||+|||.|+-|.+-|.+|.++| .+|++--|... ..+...+.|. .+. +.
T Consensus 31 ~~~~l-kgK~IaVIGyGsQG~AqAlNLRDSG--v~V~Vglr~~s~~e~~~S~~~A~~~Gf--------------~v~-~~ 92 (491)
T 3ulk_A 31 GASYL-QGKKVVIVGCGAQGLNQGLNMRDSG--LDISYALRKEAIAEKRASWRKATENGF--------------KVG-TY 92 (491)
T ss_dssp TTGGG-TTSEEEEESCSHHHHHHHHHHHHTT--CEEEEEECHHHHHTTCHHHHHHHHTTC--------------EEE-EH
T ss_pred hhHHH-cCCEEEEeCCChHhHHHHhHHHhcC--CcEEEEeCCCCcccccchHHHHHHCCC--------------Eec-CH
Confidence 34555 4589999999999999999999999 89998777432 2344445553 222 57
Q ss_pred HhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 194 KTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+|+++.+|+|++.+|+..-.++.+.|.+++++|+.+. .+-|+.
T Consensus 93 ~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~-faHGFn 135 (491)
T 3ulk_A 93 EELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALG-YSHGFN 135 (491)
T ss_dssp HHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEE-ESSCHH
T ss_pred HHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEE-ecCccc
Confidence 8899999999999999988889999999999998766 455664
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.5e-06 Score=85.10 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=70.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-----CCCCCCce-E-E--------eC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-----EQKLPENV-I-A--------TT 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~-----~~~l~~~i-~-a--------~~ 191 (460)
..||+|||+|.||..+++.+...| .+|++||+++++.+.+.+.|......+ +..-.... + . ..
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~ 267 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA 267 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence 479999999999999999999988 899999999988887776554211100 00000000 0 0 12
Q ss_pred CHHhhcCCCcEEEEcc--chhcHHH-HHHHhhhcCCCCCeEEEec
Q 012596 192 DAKTALLGADYCLHAM--PVQFSSS-FLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 192 ~~~ea~~~aDiVilaV--p~~~~~~-vl~~i~~~l~~~~iIV~~~ 233 (460)
+++++++++|+||.++ |...... +-++..+.++++.+||+++
T Consensus 268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 4677789999999986 4322111 1245666788999999986
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.9e-06 Score=80.52 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=65.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.||.++|..|+..|...+|+++|+++++++.....-....++.. .+..+..+++ .+++++||+||++.
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~--~~~~v~~~~~-~~a~~~aDvVii~a 77 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHG--FDTRVTGTND-YGPTEDSDVCIITA 77 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHT--CCCEEEEESS-SGGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccC--CCcEEEECCC-HHHhCCCCEEEECC
Confidence 79999999999999999999988333899999998765422110000000000 0112333444 45689999999987
Q ss_pred chh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 208 PVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 208 p~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
... .+.++.+.+.++ .++.+++..+|-+
T Consensus 78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 121 (314)
T 3nep_X 78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPL 121 (314)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSH
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCch
Confidence 532 123334455555 4677888888743
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=79.01 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=71.6
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
.+..+||+|||+|.||..+|..|+..|...+|+++|+++++++..... +... + . ....+..+.|.+ ++++||
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~-~-~---~~~~i~~~~d~~-~~~~aD 89 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL-F-L---KTPKIVSSKDYS-VTANSK 89 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG-G-C---SCCEEEECSSGG-GGTTEE
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhh-c-c---CCCeEEEcCCHH-HhCCCC
Confidence 345689999999999999999999988434899999998766543221 1100 1 1 112345566776 489999
Q ss_pred EEEEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+||++.-.. .+.++.+.+.++ .++.+++..+|-+
T Consensus 90 iVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPv 139 (331)
T 4aj2_A 90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPV 139 (331)
T ss_dssp EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred EEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChH
Confidence 999986311 134455566666 5678888888744
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.06 E-value=8.4e-06 Score=80.98 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=68.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|+|||+|.||..++..|.+.....+|.+|+|++++++++.+.... . + ..+. .+++++++ ++|+|++|
T Consensus 125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-~---~----~~~~-~~~~~e~v-~aDvVi~a 194 (322)
T 1omo_A 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-R---G----ISAS-VQPAEEAS-RCDVLVTT 194 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-T---T----CCEE-ECCHHHHT-SSSEEEEC
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-c---C----ceEE-ECCHHHHh-CCCEEEEe
Confidence 579999999999999999998732126899999999998888764210 0 0 1244 67888989 99999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|+.. .++. ...+++|+.|+++.
T Consensus 195 Tp~~~--pv~~--~~~l~~G~~V~~ig 217 (322)
T 1omo_A 195 TPSRK--PVVK--AEWVEEGTHINAIG 217 (322)
T ss_dssp CCCSS--CCBC--GGGCCTTCEEEECS
T ss_pred eCCCC--ceec--HHHcCCCeEEEECC
Confidence 99753 1111 24677888887763
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.6e-06 Score=82.14 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=57.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.|||+|||+|.+|..++..|++. ++|++++++.+.++++.+.... ..+. +.-.+++.++++++|+||.
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~---~~v~~~~~~~~~~~~~~~~~~~------~~~d--~~d~~~l~~~~~~~DvVi~ 83 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE---FDVYIGDVNNENLEKVKEFATP------LKVD--ASNFDKLVEVMKEFELVIG 83 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT---SEEEEEESCHHHHHHHTTTSEE------EECC--TTCHHHHHHHHTTCSEEEE
T ss_pred CccEEEEECCCHHHHHHHHHHhcC---CCeEEEEcCHHHHHHHhccCCc------EEEe--cCCHHHHHHHHhCCCEEEE
Confidence 468999999999999999999864 7999999999888877543110 0000 0001234566789999999
Q ss_pred ccchhcHHHHHHH
Q 012596 206 AMPVQFSSSFLEG 218 (460)
Q Consensus 206 aVp~~~~~~vl~~ 218 (460)
|+|...-..+++.
T Consensus 84 ~~p~~~~~~v~~~ 96 (365)
T 3abi_A 84 ALPGFLGFKSIKA 96 (365)
T ss_dssp CCCGGGHHHHHHH
T ss_pred ecCCcccchHHHH
Confidence 9998755555443
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=78.93 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=65.1
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCc
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (460)
|+++||+|||+|.||...+..|.+.. +.+|+ ++|+++++++...+.| +.+.+|.+++++ +.|
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~a~~~g--------------~~~~~~~~~ll~~~~~D 67 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAAD-NLEVHGVFDILAEKREAAAQKG--------------LKIYESYEAVLADEKVD 67 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTST-TEEEEEEECSSHHHHHHHHTTT--------------CCBCSCHHHHHHCTTCC
T ss_pred CCcCcEEEECcCHHHHHHHHHHHhCC-CcEEEEEEcCCHHHHHHHHhcC--------------CceeCCHHHHhcCCCCC
Confidence 34579999999999999999998763 26765 7899988776443332 234568888876 789
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|++|+|.....+++....+ .|..|+ +-|-+
T Consensus 68 ~V~i~tp~~~h~~~~~~al~---aGkhVl-~EKP~ 98 (359)
T 3e18_A 68 AVLIATPNDSHKELAISALE---AGKHVV-CEKPV 98 (359)
T ss_dssp EEEECSCGGGHHHHHHHHHH---TTCEEE-EESSC
T ss_pred EEEEcCCcHHHHHHHHHHHH---CCCCEE-eeCCC
Confidence 99999998776555544333 354444 44433
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-05 Score=79.02 Aligned_cols=88 Identities=10% Similarity=0.062 Sum_probs=60.7
Q ss_pred cCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 125 ERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|+++||+|||+|.||.. ++..|.+.. +.+|+ ++++++++++.+.+. |. ..+++.+++..++|
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~~l~~~~-~~~lvav~d~~~~~~~~~~~~~g~--------------~~~~~~~~l~~~~D 67 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLAAAS-DWTLQGAWSPTRAKALPICESWRI--------------PYADSLSSLAASCD 67 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHHSCS-SEEEEEEECSSCTTHHHHHHHHTC--------------CBCSSHHHHHTTCS
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCC-CeEEEEEECCCHHHHHHHHHHcCC--------------CccCcHHHhhcCCC
Confidence 34689999999999996 888887642 26766 899998888777654 32 13356666556899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEE
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
+|++|+|.....+++....+ .|..++
T Consensus 68 ~V~i~tp~~~h~~~~~~al~---~G~~v~ 93 (319)
T 1tlt_A 68 AVFVHSSTASHFDVVSTLLN---AGVHVC 93 (319)
T ss_dssp EEEECSCTTHHHHHHHHHHH---TTCEEE
T ss_pred EEEEeCCchhHHHHHHHHHH---cCCeEE
Confidence 99999998766555544332 455444
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1e-05 Score=84.67 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=70.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|+|+|.||..+|..+...| .+|+++++++.+.+...+.|. .. .+++++++++|+||.
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~~Ga--------------~~-~~l~e~l~~aDvVi~ 335 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMMEGF--------------DV-VTVEEAIGDADIVVT 335 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EE-CCHHHHGGGCSEEEE
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------EE-ecHHHHHhCCCEEEE
Confidence 5689999999999999999999888 899999999987766665553 11 256778889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+++...+-. .+..+.++++.+++++..+
T Consensus 336 atgt~~~i~--~~~l~~mk~ggilvnvG~~ 363 (494)
T 3ce6_A 336 ATGNKDIIM--LEHIKAMKDHAILGNIGHF 363 (494)
T ss_dssp CSSSSCSBC--HHHHHHSCTTCEEEECSSS
T ss_pred CCCCHHHHH--HHHHHhcCCCcEEEEeCCC
Confidence 998655210 1344557889999998764
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=78.17 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCCeEEEECcchHHHHHHHHHH-hcCCCCeE-EEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVA-NKKSQLKV-YMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La-~~G~~~~V-~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
+++||+|||+|.||..++..|. +.. +.+| .++++++++++.+.+. |. ..+.+|.+++++ ++
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~-~~~~vav~d~~~~~~~~~a~~~g~-------------~~~~~~~~~~l~~~~~ 72 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQ-GVKLVAACALDSNQLEWAKNELGV-------------ETTYTNYKDMIDTENI 72 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCS-SEEEEEEECSCHHHHHHHHHTTCC-------------SEEESCHHHHHTTSCC
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCC-CcEEEEEecCCHHHHHHHHHHhCC-------------CcccCCHHHHhcCCCC
Confidence 4689999999999999999998 532 2664 5889999888777654 21 135568888776 69
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEE
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
|+|++|+|.....+++.... +.|..++
T Consensus 73 D~V~i~tp~~~h~~~~~~al---~~G~~v~ 99 (346)
T 3cea_A 73 DAIFIVAPTPFHPEMTIYAM---NAGLNVF 99 (346)
T ss_dssp SEEEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred CEEEEeCChHhHHHHHHHHH---HCCCEEE
Confidence 99999999877655554433 2455444
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-06 Score=81.90 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=66.0
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
+|+|||+|.||.+++..|.+.| . +|++++|+.++++++.+.. +....+++.++++++|+||.++
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G--~~~I~v~nR~~~ka~~la~~~-------------~~~~~~~~~~~~~~aDiVInat 174 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMG--VKDIWVVNRTIERAKALDFPV-------------KIFSLDQLDEVVKKAKSLFNTT 174 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--CCCEEEEESCHHHHHTCCSSC-------------EEEEGGGHHHHHHTCSEEEECS
T ss_pred eEEEECcHHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHc-------------ccCCHHHHHhhhcCCCEEEECC
Confidence 8999999999999999999998 6 8999999998777654321 1123346667788999999999
Q ss_pred chhcHHHHHHHh-hhcCCCCCeEEEeccC
Q 012596 208 PVQFSSSFLEGI-SDYVDPGLPFISLSKG 235 (460)
Q Consensus 208 p~~~~~~vl~~i-~~~l~~~~iIV~~~~G 235 (460)
|..-..+. ..+ ...++++++++++.-+
T Consensus 175 p~gm~p~~-~~i~~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 175 SVGMKGEE-LPVSDDSLKNLSLVYDVIYF 202 (253)
T ss_dssp STTTTSCC-CSCCHHHHTTCSEEEECSSS
T ss_pred CCCCCCCC-CCCCHHHhCcCCEEEEeeCC
Confidence 85311000 011 2235678899999876
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.6e-05 Score=76.14 Aligned_cols=85 Identities=8% Similarity=0.059 Sum_probs=61.9
Q ss_pred CeEEEECcchHHHHH-HHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 128 NKVVVLGGGSFGTAM-AAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~-A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+||+|||+|.||..+ +..|.+.+ .+|+ ++++++++++.+.+. |.. .+.+|.+++++ ++|+
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~--~~~vav~d~~~~~~~~~~~~~g~~-------------~~~~~~~~~l~~~~~D~ 65 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATG--GEVVSMMSTSAERGAAYATENGIG-------------KSVTSVEELVGDPDVDA 65 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTT--CEEEEEECSCHHHHHHHHHHTTCS-------------CCBSCHHHHHTCTTCCE
T ss_pred CeEEEEcccHHHHHhhhHHhhcCC--CeEEEEECCCHHHHHHHHHHcCCC-------------cccCCHHHHhcCCCCCE
Confidence 589999999999998 77887755 7765 889999888777664 210 13457888776 5999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEE
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
|++++|.....+++.... +.|..++
T Consensus 66 V~i~tp~~~h~~~~~~al---~~Gk~v~ 90 (332)
T 2glx_A 66 VYVSTTNELHREQTLAAI---RAGKHVL 90 (332)
T ss_dssp EEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred EEEeCChhHhHHHHHHHH---HCCCeEE
Confidence 999999877666554433 3455444
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-05 Score=79.33 Aligned_cols=98 Identities=12% Similarity=0.164 Sum_probs=66.9
Q ss_pred hccCCCeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C
Q 012596 123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G 199 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V-~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~ 199 (460)
.|++++||+|||+|.||..++..|.+.. +.++ .++++++++++.+.+... ++......++.+++++ +
T Consensus 2 ~~~~~~~vgiiG~G~ig~~~~~~l~~~~-~~~lv~v~d~~~~~~~~~a~~~~---------~~~~~~~~~~~~~ll~~~~ 71 (362)
T 1ydw_A 2 ATETQIRIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAFATANN---------YPESTKIHGSYESLLEDPE 71 (362)
T ss_dssp ----CEEEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHTT---------CCTTCEEESSHHHHHHCTT
T ss_pred CCCCceEEEEECchHHHHHHHHHHhhCC-CcEEEEEEcCCHHHHHHHHHHhC---------CCCCCeeeCCHHHHhcCCC
Confidence 3556789999999999999999998753 2565 488999988877766421 0112356678888875 5
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+|++|+|.....+++... ++.|..|+ +-|
T Consensus 72 ~D~V~i~tp~~~h~~~~~~a---l~aGk~V~-~EK 102 (362)
T 1ydw_A 72 IDALYVPLPTSLHVEWAIKA---AEKGKHIL-LEK 102 (362)
T ss_dssp CCEEEECCCGGGHHHHHHHH---HTTTCEEE-ECS
T ss_pred CCEEEEcCChHHHHHHHHHH---HHCCCeEE-Eec
Confidence 89999999988766655443 33465544 344
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-05 Score=76.29 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=67.1
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE---eCCHHhhcCCCcEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a---~~~~~ea~~~aDiV 203 (460)
|||+|||+ |.+|..++..|+..|..++|.++|+++.......-.+. ..+..+.. ++|+++++++||+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~--------~~~~~l~~~~~t~d~~~a~~~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHI--------ETRATVKGYLGPEQLPDCLKGCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTS--------SSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhcc--------CcCceEEEecCCCCHHHHhCCCCEE
Confidence 69999998 99999999999987754689999998722221111111 11223555 25788889999999
Q ss_pred EEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|++.... .+.++.+.+.++. ++..+|..+|-+
T Consensus 73 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv 120 (314)
T 1mld_A 73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPV 120 (314)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCH
T ss_pred EECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCc
Confidence 9987421 2445556666665 566777777743
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.9e-06 Score=82.93 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=68.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|+|+|.+|..+|..|...| .+|+++++++.........|. .. .+++++++.+|+|++
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~G--a~Viv~D~dp~ra~~A~~~G~--------------~v-~~Leeal~~ADIVi~ 281 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMG--SIVYVTEIDPICALQACMDGF--------------RL-VKLNEVIRQVDIVIT 281 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EE-CCHHHHTTTCSEEEE
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCChhhhHHHHHcCC--------------Ee-ccHHHHHhcCCEEEE
Confidence 4689999999999999999999888 899999999865544434331 12 368899999999999
Q ss_pred ccchhcHHHHHH-HhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQFSSSFLE-GISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~~~~~vl~-~i~~~l~~~~iIV~~~~Gi 236 (460)
|.-... ++. +....++++.++|++..|-
T Consensus 282 atgt~~---lI~~e~l~~MK~gailINvgrg~ 310 (435)
T 3gvp_A 282 CTGNKN---VVTREHLDRMKNSCIVCNMGHSN 310 (435)
T ss_dssp CSSCSC---SBCHHHHHHSCTTEEEEECSSTT
T ss_pred CCCCcc---cCCHHHHHhcCCCcEEEEecCCC
Confidence 733222 221 3445578899999998763
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.4e-05 Score=77.28 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=56.6
Q ss_pred CCeEEEECcchHHH-HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhc-CCCcEE
Q 012596 127 TNKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTAL-LGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~-~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiV 203 (460)
++||+|||+|.||. .++..|.+.. +.+|+++|+++++++++.+. |.. ....+..+.+ .++|+|
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~-~~~l~v~d~~~~~~~~~a~~~g~~-------------~~~~~~~~~l~~~~D~V 67 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRYRVS-------------ATCTDYRDVLQYGVDAV 67 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHTTCC-------------CCCSSTTGGGGGCCSEE
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHcCCC-------------ccccCHHHHhhcCCCEE
Confidence 47999999999998 5898887652 26777999999988877664 321 0011233344 679999
Q ss_pred EEccchhcHHHHHHHh
Q 012596 204 LHAMPVQFSSSFLEGI 219 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i 219 (460)
++|+|.....+++...
T Consensus 68 ~i~tp~~~h~~~~~~a 83 (323)
T 1xea_A 68 MIHAATDVHSTLAAFF 83 (323)
T ss_dssp EECSCGGGHHHHHHHH
T ss_pred EEECCchhHHHHHHHH
Confidence 9999988766655443
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.2e-05 Score=77.90 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=89.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+|+||+|+| .|.||..++..+.+.. +++++ +++|+.... .|.....+-+ +..++.+++|+++++.++|+|
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~-~~eLv~~~d~~~~~~-----~G~d~gel~g--~~~gv~v~~dl~~ll~~~DVV 77 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAP-DATLVGALDRTGSPQ-----LGQDAGAFLG--KQTGVALTDDIERVCAEADYL 77 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCT-TEEEEEEBCCTTCTT-----TTSBTTTTTT--CCCSCBCBCCHHHHHHHCSEE
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEEecCccc-----ccccHHHHhC--CCCCceecCCHHHHhcCCCEE
Confidence 578999999 8999999999998764 26666 467764211 1111110001 112455678999988899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
|-+++.....+.+....+ .+..+|..++|+..+.. +.+.+... ...++.+|++..-+.-
T Consensus 78 IDfT~p~a~~~~~~~al~---~G~~vVigTTG~s~~~~----~~L~~aa~----~~~vv~a~N~s~Gv~l---------- 136 (272)
T 4f3y_A 78 IDFTLPEGTLVHLDAALR---HDVKLVIGTTGFSEPQK----AQLRAAGE----KIALVFSANMSVGVNV---------- 136 (272)
T ss_dssp EECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHH----HHHHHHTT----TSEEEECSCCCHHHHH----------
T ss_pred EEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHH----HHHHHHhc----cCCEEEECCCCHHHHH----------
Confidence 999887766655554433 46677777888865422 23333321 1346788876542200
Q ss_pred CCHHHHHHHHHHHhcCCceEEE
Q 012596 284 KDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
-.+..+.+.++|. .++.++.
T Consensus 137 -~~~~~~~aa~~l~-~~~diei 156 (272)
T 4f3y_A 137 -TMKLLEFAAKQFA-QGYDIEI 156 (272)
T ss_dssp -HHHHHHHHHHHTS-SSCEEEE
T ss_pred -HHHHHHHHHHhcC-cCCCEEE
Confidence 0244566667775 2455543
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=79.40 Aligned_cols=86 Identities=10% Similarity=0.201 Sum_probs=61.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V-~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+++||+|||+|.||..++..|.+.+ +.++ .++++++++++.+.+. +...++.+++++ ++|+
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~-~~~~v~v~d~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~D~ 72 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLP-GAALVRLASSNPDNLALVPPG---------------CVIESDWRSVVSAPEVEA 72 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCT-TEEEEEEEESCHHHHTTCCTT---------------CEEESSTHHHHTCTTCCE
T ss_pred CcceEEEECCcHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHhh---------------CcccCCHHHHhhCCCCCE
Confidence 4689999999999999999998863 2564 4899998765433221 235668888775 7999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEE
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
|++|+|.....+++.... +.|..++
T Consensus 73 V~i~tp~~~h~~~~~~al---~~Gk~v~ 97 (315)
T 3c1a_A 73 VIIATPPATHAEITLAAI---ASGKAVL 97 (315)
T ss_dssp EEEESCGGGHHHHHHHHH---HTTCEEE
T ss_pred EEEeCChHHHHHHHHHHH---HCCCcEE
Confidence 999999887666655433 2455444
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.5e-05 Score=80.22 Aligned_cols=91 Identities=14% Similarity=0.011 Sum_probs=69.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|||+|.+|..+|..+...| .+|+++++++.........|. .+ .+++++++.+|+|+.
T Consensus 246 ~GKTVgVIG~G~IGr~vA~~lrafG--a~Viv~d~dp~~a~~A~~~G~--------------~v-v~LeElL~~ADIVv~ 308 (464)
T 3n58_A 246 AGKVAVVCGYGDVGKGSAQSLAGAG--ARVKVTEVDPICALQAAMDGF--------------EV-VTLDDAASTADIVVT 308 (464)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHTTC--------------EE-CCHHHHGGGCSEEEE
T ss_pred cCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCcchhhHHHhcCc--------------ee-ccHHHHHhhCCEEEE
Confidence 4689999999999999999999888 899999999865444333332 22 268889999999999
Q ss_pred ccchhcHHHHH-HHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~~~~~vl-~~i~~~l~~~~iIV~~~~Gi 236 (460)
++....+ + .+....++++.++|++..|-
T Consensus 309 atgt~~l---I~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 309 TTGNKDV---ITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp CCSSSSS---BCHHHHHHSCTTEEEEECSSST
T ss_pred CCCCccc---cCHHHHhcCCCCeEEEEcCCCC
Confidence 8764432 2 23445578899999998764
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.4e-05 Score=75.93 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=55.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+++||+|||+|.||..++..|.+.. +.+|+ +++++++.++. .|.. ....+++.+. .++|+|+
T Consensus 8 ~~irv~IIG~G~iG~~~~~~l~~~~-~~elvav~d~~~~~~~~---~g~~------------~~~~~~l~~~-~~~DvVi 70 (304)
T 3bio_A 8 KKIRAAIVGYGNIGRYALQALREAP-DFEIAGIVRRNPAEVPF---ELQP------------FRVVSDIEQL-ESVDVAL 70 (304)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCT-TEEEEEEECC----------CCTT------------SCEESSGGGS-SSCCEEE
T ss_pred CCCEEEEECChHHHHHHHHHHhcCC-CCEEEEEEcCCHHHHHH---cCCC------------cCCHHHHHhC-CCCCEEE
Confidence 4579999999999999999998753 26777 78998875543 2211 1123455554 7899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+|+|.....+++... ++.|..+++.
T Consensus 71 iatp~~~h~~~~~~a---l~aG~~Vi~e 95 (304)
T 3bio_A 71 VCSPSREVERTALEI---LKKGICTADS 95 (304)
T ss_dssp ECSCHHHHHHHHHHH---HTTTCEEEEC
T ss_pred ECCCchhhHHHHHHH---HHcCCeEEEC
Confidence 999987765555443 3346666654
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=79.39 Aligned_cols=98 Identities=13% Similarity=0.205 Sum_probs=69.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|+|||+|.||.+++..|++.| . +|++|+|+.++++++.+.... . .. .+...+++.+.++++|+||
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G--~~~V~v~nR~~~ka~~la~~~~~-~------~~-~~~~~~~~~~~~~~aDivI 209 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTA--AERIDMANRTVEKAERLVREGDE-R------RS-AYFSLAEAETRLAEYDIII 209 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT--CSEEEEECSSHHHHHHHHHHSCS-S------SC-CEECHHHHHHTGGGCSEEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHhhh-c------cC-ceeeHHHHHhhhccCCEEE
Confidence 3579999999999999999999998 6 899999999998888765210 0 00 1111134556678999999
Q ss_pred EccchhcHHHH--HHHh-hhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSF--LEGI-SDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~v--l~~i-~~~l~~~~iIV~~~~ 234 (460)
.|+|......+ . .+ ...++++.+++++.-
T Consensus 210 n~t~~~~~~~~~~~-~i~~~~l~~~~~v~D~~y 241 (297)
T 2egg_A 210 NTTSVGMHPRVEVQ-PLSLERLRPGVIVSDIIY 241 (297)
T ss_dssp ECSCTTCSSCCSCC-SSCCTTCCTTCEEEECCC
T ss_pred ECCCCCCCCCCCCC-CCCHHHcCCCCEEEEcCC
Confidence 99996532110 0 01 245677889999875
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-05 Score=79.19 Aligned_cols=80 Identities=14% Similarity=0.012 Sum_probs=57.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCce-EEeCCHHhhcC--CCc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENV-IATTDAKTALL--GAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i-~a~~~~~ea~~--~aD 201 (460)
+++||||||+|.||..++..|.+.+ +.+|+ ++++++++++++.+.. ++ .+++|.+++++ ++|
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~-~~~~~av~d~~~~~~~~~a~~~-------------~~~~~~~~~~~ll~~~~~D 69 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAG-NGEVVAVSSRTLESAQAFANKY-------------HLPKAYDKLEDMLADESID 69 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHC-SEEEEEEECSCSSTTCC---CC-------------CCSCEESCHHHHHTCTTCC
T ss_pred CceEEEEEechHHHHHHHHHHHhCC-CcEEEEEEcCCHHHHHHHHHHc-------------CCCcccCCHHHHhcCCCCC
Confidence 5689999999999999999998765 25555 7899887665554421 11 25678999887 789
Q ss_pred EEEEccchhcHHHHHHHh
Q 012596 202 YCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i 219 (460)
+|++|+|.....+++...
T Consensus 70 ~V~i~tp~~~h~~~~~~a 87 (329)
T 3evn_A 70 VIYVATINQDHYKVAKAA 87 (329)
T ss_dssp EEEECSCGGGHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHH
Confidence 999999987766655443
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5.7e-05 Score=73.94 Aligned_cols=102 Identities=10% Similarity=0.133 Sum_probs=67.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~----l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|||+|||+|.+|.++|..|+.++.-.++.++|.++++++- +..... ++ .....+..+.|.+ ++++||+|
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~---~~---~~~~~i~~~~d~~-~~~~aDvV 73 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA---GI---DKYPKIVGGADYS-LLKGSEII 73 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG---GG---TCCCEEEEESCGG-GGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc---cC---CCCCeEecCCCHH-HhCCCCEE
Confidence 7999999999999999999988754589999999865432 222100 00 1112344566765 47999999
Q ss_pred EEccc--h---h-----------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMP--V---Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp--~---~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|++-- . . .++++.++|.++. ++.+++.++|-++
T Consensus 74 vitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPvd 122 (294)
T 2x0j_A 74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMD 122 (294)
T ss_dssp EECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHH
T ss_pred EEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcch
Confidence 99752 1 1 1344455666654 5778888888543
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.90 E-value=3.7e-05 Score=76.31 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=60.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~-~~~-V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
++||||||+|.||..++..|.+.+. +.+ |.+++|++++++++.+.... + .+.+|.+++++ +.|+
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~---------~---~~~~~~~~ll~~~~vD~ 69 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDI---------P---KAYGSYEELAKDPNVEV 69 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTC---------S---CEESSHHHHHHCTTCCE
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCC---------C---cccCCHHHHhcCCCCCE
Confidence 4799999999999999999986541 134 44789999988887764210 0 34678888876 6999
Q ss_pred EEEccchhcHHHHHHHh
Q 012596 203 CLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i 219 (460)
|++|+|.....+++...
T Consensus 70 V~i~tp~~~H~~~~~~a 86 (334)
T 3ohs_X 70 AYVGTQHPQHKAAVMLC 86 (334)
T ss_dssp EEECCCGGGHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHH
Confidence 99999987765554443
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.2e-05 Score=78.94 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=66.2
Q ss_pred cCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 125 ERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
|+++||||||+|.||.. ++..|.+.. +.+|+ ++|+++++++.+.+... ...+++|.+++++ +.
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~~------------~~~~~~~~~~ll~~~~v 69 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQ-DIRIVAACDSDLERARRVHRFIS------------DIPVLDNVPAMLNQVPL 69 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCT-TEEEEEEECSSHHHHGGGGGTSC------------SCCEESSHHHHHHHSCC
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCC-CcEEEEEEcCCHHHHHHHHHhcC------------CCcccCCHHHHhcCCCC
Confidence 35689999999999985 888888753 26766 88999988776665311 1345678988876 46
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|+|++|+|.....+++....+ .|..|+ +-|-+.
T Consensus 70 D~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla 102 (359)
T 3m2t_A 70 DAVVMAGPPQLHFEMGLLAMS---KGVNVF-VEKPPC 102 (359)
T ss_dssp SEEEECSCHHHHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred CEEEEcCCcHHHHHHHHHHHH---CCCeEE-EECCCc
Confidence 999999998766555544333 344433 444443
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.6e-05 Score=75.36 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=64.8
Q ss_pred cCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 125 ERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
++|+||||||+|.||.. ++..+.+.. +.+|+ ++|+++++++++.++.. . .++++|.+++++ +.
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~-~~~lvav~d~~~~~a~~~a~~~g---------~---~~~y~d~~ell~~~~i 87 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAE-NCVVTAIASRDLTRAREMADRFS---------V---PHAFGSYEEMLASDVI 87 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCS-SEEEEEEECSSHHHHHHHHHHHT---------C---SEEESSHHHHHHCSSC
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCC-CeEEEEEECCCHHHHHHHHHHcC---------C---CeeeCCHHHHhcCCCC
Confidence 45789999999999975 466666543 26666 78999999888876521 0 145678998874 58
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|+|++|+|...-.++.....+ .|.-| -|-|-+.
T Consensus 88 DaV~I~tP~~~H~~~~~~al~---aGkhV-l~EKPla 120 (350)
T 4had_A 88 DAVYIPLPTSQHIEWSIKAAD---AGKHV-VCEKPLA 120 (350)
T ss_dssp SEEEECSCGGGHHHHHHHHHH---TTCEE-EECSCCC
T ss_pred CEEEEeCCCchhHHHHHHHHh---cCCEE-EEeCCcc
Confidence 999999998766555444333 24433 3455443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.7e-05 Score=78.19 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=68.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil 205 (460)
.++|.|+|+|.+|..++..|.+.| ++|++++++++.++.+++.|....+ .+..-+ +.+.++ ++++|+||+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~~~v~~~~~~g~~vi~-GDat~~------~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDPDHIETLRKFGMKVFY-GDATRM------DLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCHHHHHHHHHTTCCCEE-SCTTCH------HHHHHTTTTTCSEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHhCCCeEEE-cCCCCH------HHHHhcCCCccCEEEE
Confidence 478999999999999999999999 9999999999999998877653221 111100 012222 578999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+++.......+-...+.+.++..||.-.+
T Consensus 75 ~~~~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 75 AIDDPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp CCSSHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCCChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 99986654433333344445555555443
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.4e-05 Score=76.15 Aligned_cols=97 Identities=8% Similarity=0.010 Sum_probs=65.1
Q ss_pred hccCCCeEEEECcchHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC-
Q 012596 123 ILERTNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG- 199 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~-~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~- 199 (460)
-||+++||||||+|.+|. .++..+...+ .+|+ ++|+++++++++.+... ...+++|.++++++
T Consensus 22 ~Mm~~irvgiiG~G~~~~~~~~~~~~~~~--~~lvav~d~~~~~a~~~a~~~~------------~~~~~~~~~~ll~~~ 87 (361)
T 3u3x_A 22 SMMDELRFAAVGLNHNHIYGQVNCLLRAG--ARLAGFHEKDDALAAEFSAVYA------------DARRIATAEEILEDE 87 (361)
T ss_dssp ----CCEEEEECCCSTTHHHHHHHHHHTT--CEEEEEECSCHHHHHHHHHHSS------------SCCEESCHHHHHTCT
T ss_pred hhccCcEEEEECcCHHHHHHHHHHhhcCC--cEEEEEEcCCHHHHHHHHHHcC------------CCcccCCHHHHhcCC
Confidence 366678999999999995 5677776666 7755 88999998888876521 12456789998864
Q ss_pred -CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 200 -ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 200 -aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
.|+|++|+|.....+++....+ .|..|+ +-|-+.
T Consensus 88 ~vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla 122 (361)
T 3u3x_A 88 NIGLIVSAAVSSERAELAIRAMQ---HGKDVL-VDKPGM 122 (361)
T ss_dssp TCCEEEECCCHHHHHHHHHHHHH---TTCEEE-EESCSC
T ss_pred CCCEEEEeCChHHHHHHHHHHHH---CCCeEE-EeCCCC
Confidence 8999999998765555444333 344433 445443
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.3e-05 Score=74.51 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=88.1
Q ss_pred hccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 123 ILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 123 ~~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
.|++++||+|+| +|.||..++..+.+.. +.+++ +++++.... .|.....+-+.. +.++.+++|+++++.++
T Consensus 17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~-~~eLvg~vd~~~~~~-----~G~d~gel~G~~-~~gv~v~~dl~~ll~~a 89 (288)
T 3ijp_A 17 QGPGSMRLTVVGANGRMGRELITAIQRRK-DVELCAVLVRKGSSF-----VDKDASILIGSD-FLGVRITDDPESAFSNT 89 (288)
T ss_dssp ----CEEEEESSTTSHHHHHHHHHHHTCS-SEEEEEEBCCTTCTT-----TTSBGGGGTTCS-CCSCBCBSCHHHHTTSC
T ss_pred hccCCeEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccc-----cccchHHhhccC-cCCceeeCCHHHHhcCC
Confidence 566678999999 9999999999988653 25655 557754210 111111010110 23456678999989999
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV 280 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~ 280 (460)
|+||-+++...+.+.+... ++.+..+|..++|+..+.. +.+.+... ...++..|++..-+.-
T Consensus 90 DVvIDFT~p~a~~~~~~~~---l~~Gv~vViGTTG~~~e~~----~~L~~aa~----~~~~~~a~N~SiGv~l------- 151 (288)
T 3ijp_A 90 EGILDFSQPQASVLYANYA---AQKSLIHIIGTTGFSKTEE----AQIADFAK----YTTIVKSGNMSLGVNL------- 151 (288)
T ss_dssp SEEEECSCHHHHHHHHHHH---HHHTCEEEECCCCCCHHHH----HHHHHHHT----TSEEEECSCCCHHHHH-------
T ss_pred CEEEEcCCHHHHHHHHHHH---HHcCCCEEEECCCCCHHHH----HHHHHHhC----cCCEEEECCCcHHHHH-------
Confidence 9999887765554444433 3347778888889875432 23333322 1356888887642200
Q ss_pred EccCCHHHHHHHHHHHhcCCceEEE
Q 012596 281 VASKDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 281 i~~~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
-....+.+.+.|. .++.++.
T Consensus 152 ----l~~l~~~aa~~l~-~~~dieI 171 (288)
T 3ijp_A 152 ----LANLVKRAAKALD-DDFDIEI 171 (288)
T ss_dssp ----HHHHHHHHHHHSC-TTSEEEE
T ss_pred ----HHHHHHHHHHhcC-CCCCEEE
Confidence 0234566666665 2455543
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.6e-05 Score=75.65 Aligned_cols=79 Identities=9% Similarity=0.014 Sum_probs=58.3
Q ss_pred CCCeEEEECcchHHH-HHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCc
Q 012596 126 RTNKVVVLGGGSFGT-AMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~-~~A~~La~~G~~~~V-~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (460)
+++||||||+|.+|. .++..|...+ .+| .++|+++++++.+.+... .+.+.+|.+++++ +.|
T Consensus 3 ~~~rvgiiG~G~~~~~~~~~~l~~~~--~~lvav~d~~~~~~~~~a~~~~------------~~~~~~~~~~ll~~~~~D 68 (336)
T 2p2s_A 3 KKIRFAAIGLAHNHIYDMCQQLIDAG--AELAGVFESDSDNRAKFTSLFP------------SVPFAASAEQLITDASID 68 (336)
T ss_dssp -CCEEEEECCSSTHHHHHHHHHHHTT--CEEEEEECSCTTSCHHHHHHST------------TCCBCSCHHHHHTCTTCC
T ss_pred CccEEEEECCChHHHHHhhhhhcCCC--cEEEEEeCCCHHHHHHHHHhcC------------CCcccCCHHHHhhCCCCC
Confidence 568999999999996 6777776666 775 589999988877766421 1234568888876 689
Q ss_pred EEEEccchhcHHHHHHH
Q 012596 202 YCLHAMPVQFSSSFLEG 218 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~ 218 (460)
+|++|+|.....+++..
T Consensus 69 ~V~i~tp~~~h~~~~~~ 85 (336)
T 2p2s_A 69 LIACAVIPCDRAELALR 85 (336)
T ss_dssp EEEECSCGGGHHHHHHH
T ss_pred EEEEeCChhhHHHHHHH
Confidence 99999998766555443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.84 E-value=8.7e-05 Score=73.81 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=68.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCC----HHHHHH----HHhhcCCCccCCCCCCCCceEEeCC
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRD----PAVCQS----INEKHCNCRYFPEQKLPENVIATTD 192 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~-----~~V~v~~r~----~~~~~~----l~~~g~~~~~~~~~~l~~~i~a~~~ 192 (460)
.|||+|+|+ |.+|..++..|+..|.- .+|.++|++ .++++. +.. .. ..+...+..+++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~-~~-------~~~~~~i~~~~~ 76 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD-CA-------FPLLAGMTAHAD 76 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHT-TT-------CTTEEEEEEESS
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhh-hc-------ccccCcEEEecC
Confidence 589999998 99999999999987720 279999998 544432 222 10 011235667788
Q ss_pred HHhhcCCCcEEEEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 193 AKTALLGADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 193 ~~ea~~~aDiVilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
..+++++||+||++.... .+.++++.+.++..++..+|..+|-
T Consensus 77 ~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNP 135 (329)
T 1b8p_A 77 PMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNP 135 (329)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred cHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence 888899999999875311 1334555666654456788888773
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0001 Score=73.73 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=63.3
Q ss_pred ccCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--
Q 012596 124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG-- 199 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~-- 199 (460)
|++++||||||+|.||.. .+..|.+.. +.+|+ ++++++++++ +.. ..+.+++|.++++++
T Consensus 4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~-~~~l~av~d~~~~~~~---~~~------------~~~~~~~~~~~ll~~~~ 67 (352)
T 3kux_A 4 MADKIKVGLLGYGYASKTFHAPLIMGTP-GLELAGVSSSDASKVH---ADW------------PAIPVVSDPQMLFNDPS 67 (352)
T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTST-TEEEEEEECSCHHHHH---TTC------------SSCCEESCHHHHHHCSS
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhhCC-CcEEEEEECCCHHHHH---hhC------------CCCceECCHHHHhcCCC
Confidence 656789999999999997 677777652 26765 8899987654 211 123466789988764
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
.|+|++|+|.....+++....+ .|..|+ +-|-+.
T Consensus 68 vD~V~i~tp~~~H~~~~~~al~---aGkhV~-~EKPla 101 (352)
T 3kux_A 68 IDLIVIPTPNDTHFPLAQSALA---AGKHVV-VDKPFT 101 (352)
T ss_dssp CCEEEECSCTTTHHHHHHHHHH---TTCEEE-ECSSCC
T ss_pred CCEEEEeCChHHHHHHHHHHHH---CCCcEE-EECCCc
Confidence 8999999998766555443332 354443 345443
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=6.8e-06 Score=79.92 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=63.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+++.|||+|.||.+++..|++.| . +|++++|+.++++++.+.. .....+++.++++++|+||.
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~~~~a~~la~~~-------------~~~~~~~~~~~~~~aDiVIn 181 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIV--RPTLTVANRTMSRFNNWSLNI-------------NKINLSHAESHLDEFDIIIN 181 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTC--CSCCEEECSCGGGGTTCCSCC-------------EEECHHHHHHTGGGCSEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHhc-------------ccccHhhHHHHhcCCCEEEE
Confidence 578999999999999999999998 6 8999999987655443210 11112356666789999999
Q ss_pred ccchhcHHHHHHHh-hhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGI-SDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i-~~~l~~~~iIV~~~~ 234 (460)
++|..-...+-..+ ...++++.+++++.-
T Consensus 182 aTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY 211 (277)
T 3don_A 182 TTPAGMNGNTDSVISLNRLASHTLVSDIVY 211 (277)
T ss_dssp CCC-------CCSSCCTTCCSSCEEEESCC
T ss_pred CccCCCCCCCcCCCCHHHcCCCCEEEEecC
Confidence 99964222110001 345678889999874
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7.2e-05 Score=74.33 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEE---eCCHHhhcCC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIA---TTDAKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a---~~~~~ea~~~ 199 (460)
++|||+|+| +|.+|..++..|+..|..++|+++|++++.. ..+.... .+..+.. ++|..+++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~----------~~~~v~~~~~t~d~~~al~g 76 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMD----------TGAVVRGFLGQQQLEAALTG 76 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSC----------SSCEEEEEESHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhccc----------ccceEEEEeCCCCHHHHcCC
Confidence 358999999 7999999999999876435899999887522 2222211 1112333 3467788999
Q ss_pred CcEEEEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 200 ADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 200 aDiVilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+|+||++.... .+.++++.+.++- ++..++..+|-++
T Consensus 77 aDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNPv~ 129 (326)
T 1smk_A 77 MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNPVN 129 (326)
T ss_dssp CSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH
T ss_pred CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCchH
Confidence 99999987421 1344445555544 5667777776444
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.78 E-value=9.4e-05 Score=75.04 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 127 ~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
++||||||+| .||..++..|.+.. +.+|+ ++|+++++++++.+.. ++..++|.+++++ +.|+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~-------------g~~~~~~~~ell~~~~vD~ 67 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHP-DAQIVAACDPNEDVRERFGKEY-------------GIPVFATLAEMMQHVQMDA 67 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCT-TEEEEEEECSCHHHHHHHHHHH-------------TCCEESSHHHHHHHSCCSE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCC-CeEEEEEEeCCHHHHHHHHHHc-------------CCCeECCHHHHHcCCCCCE
Confidence 5799999999 99999999998754 25655 8899998887776542 1235678888876 5999
Q ss_pred EEEccchhcHHHHHHHh
Q 012596 203 CLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i 219 (460)
|++++|.....+++...
T Consensus 68 V~i~tp~~~H~~~~~~a 84 (387)
T 3moi_A 68 VYIASPHQFHCEHVVQA 84 (387)
T ss_dssp EEECSCGGGHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHH
Confidence 99999987665554443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.2e-05 Score=79.61 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEE--eCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIA--TTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDi 202 (460)
..++|+|+|+|.||..++..+...| .+|+++|+++++.+.+.+. |.... ... ..++.+.++++|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~~g~~~~----------~~~~~~~~l~~~l~~aDv 234 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAEFCGRIH----------TRYSSAYELEGAVKRADL 234 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTTSSE----------EEECCHHHHHHHHHHCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhcCCeeE----------eccCCHHHHHHHHcCCCE
Confidence 3589999999999999999999988 8999999999888777653 32100 000 1245566788999
Q ss_pred EEEccchhc--HHHH-HHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQF--SSSF-LEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~--~~~v-l~~i~~~l~~~~iIV~~~ 233 (460)
||.|++... ...+ .++..+.++++.+||+++
T Consensus 235 Vi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 235 VIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp EEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred EEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 999885322 1111 234455678889999886
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=5.2e-05 Score=66.29 Aligned_cols=91 Identities=8% Similarity=0.025 Sum_probs=64.7
Q ss_pred hccCCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 123 ILERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 123 ~~~~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
++.+..+|+|||+ |.+|..++..|.+.| ++ +|+.++.. +.+ .++.+..+++++.+
T Consensus 18 ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G--~~--v~~Vnp~~-~~i----------------~G~~~y~sl~~l~~ 76 (144)
T 2d59_A 18 ILTRYKKIALVGASPKPERDANIVMKYLLEHG--YD--VYPVNPKY-EEV----------------LGRKCYPSVLDIPD 76 (144)
T ss_dssp HHHHCCEEEEETCCSCTTSHHHHHHHHHHHTT--CE--EEEECTTC-SEE----------------TTEECBSSGGGCSS
T ss_pred HHcCCCEEEEEccCCCCCchHHHHHHHHHHCC--CE--EEEECCCC-CeE----------------CCeeccCCHHHcCC
Confidence 4433689999999 799999999999998 76 56666531 000 13455667888777
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
..|++++++|...+.++++++.+.- .+.+ .++.|..
T Consensus 77 ~vDlvvi~vp~~~~~~vv~~~~~~g-i~~i--~~~~g~~ 112 (144)
T 2d59_A 77 KIEVVDLFVKPKLTMEYVEQAIKKG-AKVV--WFQYNTY 112 (144)
T ss_dssp CCSEEEECSCHHHHHHHHHHHHHHT-CSEE--EECTTCC
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHcC-CCEE--EECCCch
Confidence 8999999999999888888776532 1223 3556665
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.75 E-value=8.5e-05 Score=75.87 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=66.6
Q ss_pred chhccCCCeEEEECcchHHHHHHHHHHhcC-------CCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCC
Q 012596 121 TDILERTNKVVVLGGGSFGTAMAAHVANKK-------SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD 192 (460)
Q Consensus 121 ~~~~~~~~kI~IIGaG~mG~~~A~~La~~G-------~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~ 192 (460)
.+-|++++||||||+|.||...+..|.+.+ .+.+|+ ++|+++++++++.++... .++++|
T Consensus 20 ~~~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~------------~~~y~d 87 (412)
T 4gqa_A 20 FQSMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA------------EKAYGD 87 (412)
T ss_dssp -----CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC------------SEEESS
T ss_pred cccccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC------------CeEECC
Confidence 345766789999999999999888887642 013555 789999998888765210 145678
Q ss_pred HHhhcC--CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 193 AKTALL--GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 193 ~~ea~~--~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
.+++++ +.|+|++|+|.....++.....+ .|.-| -|-|-+..
T Consensus 88 ~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhV-l~EKP~a~ 131 (412)
T 4gqa_A 88 WRELVNDPQVDVVDITSPNHLHYTMAMAAIA---AGKHV-YCEKPLAV 131 (412)
T ss_dssp HHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---TTCEE-EEESCSCS
T ss_pred HHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---cCCCe-EeecCCcC
Confidence 988875 58999999998766555443332 34433 34554443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3.2e-05 Score=79.16 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=66.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-C--CCceE--Ee--------CC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L--PENVI--AT--------TD 192 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-l--~~~i~--a~--------~~ 192 (460)
...+|+|||+|.+|...+..+...| .+|+++|+++++.+.+.+.|.....+.... . ..+.. .. .+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 248 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL 248 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence 3579999999999999999999888 899999999887777655443210000000 0 00000 00 02
Q ss_pred HHhhcCCCcEEEEc--cchhcHHHHH-HHhhhcCCCCCeEEEec
Q 012596 193 AKTALLGADYCLHA--MPVQFSSSFL-EGISDYVDPGLPFISLS 233 (460)
Q Consensus 193 ~~ea~~~aDiVila--Vp~~~~~~vl-~~i~~~l~~~~iIV~~~ 233 (460)
+.+.+.++|+||.+ +|......++ ++....++++.+||+++
T Consensus 249 l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 249 FAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 45666789999999 5521111111 23344567899999987
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00013 Score=71.15 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=72.7
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCc
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (460)
.+.+||+|+|+ |.||...+..+.+.| +++ ++..++.+. |. . ..++.+.++++++.+ ++|
T Consensus 5 ~~~~rVaViG~sG~~G~~~~~~l~~~g--~~~-V~~V~p~~~------g~--~-------~~G~~vy~sl~el~~~~~~D 66 (288)
T 2nu8_A 5 DKNTKVICQGFTGSQGTFHSEQAIAYG--TKM-VGGVTPGKG------GT--T-------HLGLPVFNTVREAVAATGAT 66 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHT--CEE-EEEECTTCT------TC--E-------ETTEEEESSHHHHHHHHCCC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC--CeE-EEEeCCCcc------cc--e-------eCCeeccCCHHHHhhcCCCC
Confidence 45689999998 999999999999888 773 344444211 00 0 013567778888877 899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
++++++|.....+++++..+. .-..+|.++.|+..+..+.+.+..++
T Consensus 67 ~viI~tP~~~~~~~~~ea~~~--Gi~~iVi~t~G~~~~~~~~l~~~A~~ 113 (288)
T 2nu8_A 67 ASVIYVPAPFCKDSILEAIDA--GIKLIITITEGIPTLDMLTVKVKLDE 113 (288)
T ss_dssp EEEECCCGGGHHHHHHHHHHT--TCSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999988888776552 11345667778876543445555444
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.2e-05 Score=75.64 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=64.5
Q ss_pred CCeEEEECcchHHHHHHHH-HHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CcE
Q 012596 127 TNKVVVLGGGSFGTAMAAH-VANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~-La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi 202 (460)
++||||||+|.||..+... +.....+.+|+ +++++++..+...+. ..+.+.+|+++++++ .|+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~-------------~~~~~~~~~~~ll~~~~~D~ 68 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIY-------------SHIHFTSDLDEVLNDPDVKL 68 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGG-------------TTCEEESCTHHHHTCTTEEE
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhc-------------CCCceECCHHHHhcCCCCCE
Confidence 5799999999999965444 43322236776 889987654222211 124567889998875 899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc--cchhhhHHHHHHH
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE--LNTLRMMSQIIPQ 250 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~--~~~~~~l~e~l~~ 250 (460)
|++|+|.....+++.... +.|..|+ +-|-+. .+..+.+.+..++
T Consensus 69 V~i~tp~~~h~~~~~~al---~aGk~Vl-~EKP~a~~~~e~~~l~~~a~~ 114 (345)
T 3f4l_A 69 VVVCTHADSHFEYAKRAL---EAGKNVL-VEKPFTPTLAQAKELFALAKS 114 (345)
T ss_dssp EEECSCGGGHHHHHHHHH---HTTCEEE-ECSSSCSSHHHHHHHHHHHHH
T ss_pred EEEcCChHHHHHHHHHHH---HcCCcEE-EeCCCCCCHHHHHHHHHHHHH
Confidence 999999876655544333 2354444 445333 3333344444433
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=8.2e-05 Score=76.79 Aligned_cols=85 Identities=8% Similarity=0.155 Sum_probs=61.5
Q ss_pred cCCCeEEEECcchHHH-HHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC--C
Q 012596 125 ERTNKVVVLGGGSFGT-AMAAHVANKKSQLKV-YMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL--G 199 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~-~~A~~La~~G~~~~V-~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~--~ 199 (460)
++++||+|||+|.||. .++..|.+.+ +.+| .++|+++++++.+.+. |... ..+...+|.+++++ +
T Consensus 81 ~~~irigiIG~G~~g~~~~~~~l~~~~-~~~lvav~d~~~~~~~~~a~~~g~~~---------~~~~~~~~~~~ll~~~~ 150 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQ-HSRIEALVSGNAEKAKIVAAEYGVDP---------RKIYDYSNFDKIAKDPK 150 (433)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCS-SEEEEEEECSCHHHHHHHHHHTTCCG---------GGEECSSSGGGGGGCTT
T ss_pred CCceEEEEECCcHHHHHHHHHHHhhCC-CcEEEEEEcCCHHHHHHHHHHhCCCc---------ccccccCCHHHHhcCCC
Confidence 3568999999999997 8999887653 2565 5889999888877664 2210 11334567888776 7
Q ss_pred CcEEEEccchhcHHHHHHHh
Q 012596 200 ADYCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i 219 (460)
+|+|++|+|.....+++...
T Consensus 151 vD~V~iatp~~~h~~~~~~a 170 (433)
T 1h6d_A 151 IDAVYIILPNSLHAEFAIRA 170 (433)
T ss_dssp CCEEEECSCGGGHHHHHHHH
T ss_pred CCEEEEcCCchhHHHHHHHH
Confidence 89999999988766655443
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00025 Score=73.27 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=60.1
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh----cCCCccCCCCCCCCceEEeC----CHH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK----HCNCRYFPEQKLPENVIATT----DAK 194 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~----g~~~~~~~~~~l~~~i~a~~----~~~ 194 (460)
+|+++||+|||+|.||...+..|.+.. +.+|+ ++|+++++++++.+. |. + ...+.+ |.+
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~-~~~lvav~d~~~~~~~~~a~~~~~~g~----------~-~~~~~~~~~~~~~ 84 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRD-DVEIVAFADPDPYMVGRAQEILKKNGK----------K-PAKVFGNGNDDYK 84 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSCHHHHHHHHHHHHHTTC----------C-CCEEECSSTTTHH
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHHHHHhcCC----------C-CCceeccCCCCHH
Confidence 345689999999999999999998752 26654 889999888776542 21 0 134556 888
Q ss_pred hhcC--CCcEEEEccchhcHHHHHHH
Q 012596 195 TALL--GADYCLHAMPVQFSSSFLEG 218 (460)
Q Consensus 195 ea~~--~aDiVilaVp~~~~~~vl~~ 218 (460)
++++ +.|+|++|+|.....+++..
T Consensus 85 ~ll~~~~vD~V~i~tp~~~h~~~~~~ 110 (444)
T 2ixa_A 85 NMLKDKNIDAVFVSSPWEWHHEHGVA 110 (444)
T ss_dssp HHTTCTTCCEEEECCCGGGHHHHHHH
T ss_pred HHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 8886 58999999998765554443
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.5e-05 Score=77.07 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=66.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEE--eCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIA--TTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiV 203 (460)
.++|+|+|+|.+|..++..+...| .+|++++|++++.+.+.+. |.. + .... ..+.+++++++|+|
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~~~~~~~~~~~g~~--------~--~~~~~~~~~l~~~~~~~DvV 233 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMG--AQVTILDVNHKRLQYLDDVFGGR--------V--ITLTATEANIKKSVQHADLL 233 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTTS--------E--EEEECCHHHHHHHHHHCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHhcCce--------E--EEecCCHHHHHHHHhCCCEE
Confidence 589999999999999999999999 8999999999887776653 211 0 0001 12455667789999
Q ss_pred EEccchhc--HHHH-HHHhhhcCCCCCeEEEec
Q 012596 204 LHAMPVQF--SSSF-LEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp~~~--~~~v-l~~i~~~l~~~~iIV~~~ 233 (460)
|.+++... ...+ .++..+.++++..||+++
T Consensus 234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp EECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred EECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 99998542 1111 234455667788888875
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00018 Score=71.58 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=66.5
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 127 ~~kI~IIGaG-~mG~~~A~~La~~G~~~~V-~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
++||||||+| .||...+..|.+.+.+.+| .++|+++++++++.+... ...+++|.+++++ +.|+
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~------------~~~~~~~~~~ll~~~~vD~ 85 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG------------NPAVFDSYEELLESGLVDA 85 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS------------SCEEESCHHHHHHSSCCSE
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC------------CCcccCCHHHHhcCCCCCE
Confidence 5799999999 8999999999876222565 588999998888766421 0245678988875 5899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|++|+|.....+++....+ .|..|+ +-|-+.
T Consensus 86 V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla 116 (340)
T 1zh8_A 86 VDLTLPVELNLPFIEKALR---KGVHVI-CEKPIS 116 (340)
T ss_dssp EEECCCGGGHHHHHHHHHH---TTCEEE-EESSSS
T ss_pred EEEeCCchHHHHHHHHHHH---CCCcEE-EeCCCC
Confidence 9999998766555544333 354433 345443
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.1e-05 Score=76.71 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=57.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V-~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+++||+|||+|+||..++..|.+.+ +.++ .+++++++. .+ + .++..++|.++++.++|+|+
T Consensus 2 ~~irV~IiG~G~mG~~~~~~l~~~~-~~elvav~d~~~~~--~~---~------------~gv~~~~d~~~ll~~~DvVi 63 (320)
T 1f06_A 2 TNIRVAIVGYGNLGRSVEKLIAKQP-DMDLVGIFSRRATL--DT---K------------TPVFDVADVDKHADDVDVLF 63 (320)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCS-SEEEEEEEESSSCC--SS---S------------SCEEEGGGGGGTTTTCSEEE
T ss_pred CCCEEEEEeecHHHHHHHHHHhcCC-CCEEEEEEcCCHHH--hh---c------------CCCceeCCHHHHhcCCCEEE
Confidence 4689999999999999999998764 2554 488887532 10 0 13455677878777899999
Q ss_pred EccchhcH-HHHHHHhhhcCCCCCeEEE
Q 012596 205 HAMPVQFS-SSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 205 laVp~~~~-~~vl~~i~~~l~~~~iIV~ 231 (460)
+|+|.... +.+.. .++.|..+|.
T Consensus 64 iatp~~~h~~~~~~----al~aG~~Vv~ 87 (320)
T 1f06_A 64 LCMGSATDIPEQAP----KFAQFACTVD 87 (320)
T ss_dssp ECSCTTTHHHHHHH----HHTTTSEEEC
T ss_pred EcCCcHHHHHHHHH----HHHCCCEEEE
Confidence 99998754 33332 3334555554
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00036 Score=70.12 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=61.0
Q ss_pred CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCc
Q 012596 126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (460)
+++||||||+|.||.. .+..|.+.. +.+|+ +++++++++. +.. ..+.+++|.+++++ +.|
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~---~~~------------~~~~~~~~~~~ll~~~~~D 69 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVP-GLNLAFVASRDEEKVK---RDL------------PDVTVIASPEAAVQHPDVD 69 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTST-TEEEEEEECSCHHHHH---HHC------------TTSEEESCHHHHHTCTTCS
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCC-CeEEEEEEcCCHHHHH---hhC------------CCCcEECCHHHHhcCCCCC
Confidence 4579999999999996 666666542 26765 8899987654 211 02356779999887 789
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|++|+|.....+++.... +.|..|+ +-|-+
T Consensus 70 ~V~i~tp~~~H~~~~~~al---~aGk~Vl-~EKPl 100 (364)
T 3e82_A 70 LVVIASPNATHAPLARLAL---NAGKHVV-VDKPF 100 (364)
T ss_dssp EEEECSCGGGHHHHHHHHH---HTTCEEE-ECSCS
T ss_pred EEEEeCChHHHHHHHHHHH---HCCCcEE-EeCCC
Confidence 9999999876655544333 2354444 45533
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00041 Score=71.49 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=67.1
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh--cC--CCccCCCC-CC-----CCceEEeCC
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK--HC--NCRYFPEQ-KL-----PENVIATTD 192 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~--g~--~~~~~~~~-~l-----~~~i~a~~~ 192 (460)
.++++||||||+|.||..++..+.+.. +.+|. ++|+++++++...++ |. ......+. .+ ...+.+++|
T Consensus 20 ~~k~IRVGIIGaG~iG~~~~~~l~~~~-~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D 98 (446)
T 3upl_A 20 TGKPIRIGLIGAGEMGTDIVTQVARMQ-GIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDD 98 (446)
T ss_dssp TTCCEEEEEECCSHHHHHHHHHHTTSS-SEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESC
T ss_pred cCCceEEEEECChHHHHHHHHHHhhCC-CcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECC
Confidence 345689999999999999999887642 25544 789999888776543 31 00000000 00 113567889
Q ss_pred HHhhcC--CCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccC
Q 012596 193 AKTALL--GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 193 ~~ea~~--~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
.+++++ +.|+|++++|... ..++. ...++.|+-|+...++
T Consensus 99 ~eeLL~d~dIDaVviaTp~p~~H~e~a---~~AL~AGKHVv~~nk~ 141 (446)
T 3upl_A 99 NDLILSNPLIDVIIDATGIPEVGAETG---IAAIRNGKHLVMMNVE 141 (446)
T ss_dssp HHHHHTCTTCCEEEECSCCHHHHHHHH---HHHHHTTCEEEECCHH
T ss_pred HHHHhcCCCCCEEEEcCCChHHHHHHH---HHHHHcCCcEEecCcc
Confidence 999886 5899999998642 22222 2233457777755443
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00011 Score=75.54 Aligned_cols=97 Identities=14% Similarity=0.203 Sum_probs=65.5
Q ss_pred cCCCeEEEECcch---HHHHHHHHHHhcCCCCeEE--EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 125 ERTNKVVVLGGGS---FGTAMAAHVANKKSQLKVY--MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 125 ~~~~kI~IIGaG~---mG~~~A~~La~~G~~~~V~--v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
|+++||||||+|. ||...+..+...+ +.+|+ ++++++++++++.++ |.. ...+++|.+++++
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~-~~~lva~v~d~~~~~a~~~a~~~g~~-----------~~~~~~~~~~ll~ 102 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDD-HYELVAGALSSTPEKAEASGRELGLD-----------PSRVYSDFKEMAI 102 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTS-CEEEEEEECCSSHHHHHHHHHHHTCC-----------GGGBCSCHHHHHH
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCC-CcEEEEEEeCCCHHHHHHHHHHcCCC-----------cccccCCHHHHHh
Confidence 4567999999999 9999888887665 25665 679999988887664 321 0124568888776
Q ss_pred C-------CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 199 G-------ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 199 ~-------aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+ .|+|++|+|.....+++.... +.|..|+ |-|-+.
T Consensus 103 ~~~~~~~~vD~V~I~tp~~~H~~~~~~al---~aGkhVl-~EKPla 144 (417)
T 3v5n_A 103 REAKLKNGIEAVAIVTPNHVHYAAAKEFL---KRGIHVI-CDKPLT 144 (417)
T ss_dssp HHHHCTTCCSEEEECSCTTSHHHHHHHHH---TTTCEEE-EESSSC
T ss_pred cccccCCCCcEEEECCCcHHHHHHHHHHH---hCCCeEE-EECCCc
Confidence 4 899999999877655544433 3454443 455443
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=8.8e-05 Score=75.36 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=66.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-----CCCc-eE-Ee--------
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPEN-VI-AT-------- 190 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-----l~~~-i~-a~-------- 190 (460)
...+|+|+|+|.+|...+..+...| .+|+++|+++++.+.+.+.|.....+.... -..+ .+ ..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~ 248 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 248 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence 4689999999999999999999888 789999999877766665443211000000 0000 00 00
Q ss_pred CCHHhhcCCCcEEEEcc--chhcHHHHH-HHhhhcCCCCCeEEEec
Q 012596 191 TDAKTALLGADYCLHAM--PVQFSSSFL-EGISDYVDPGLPFISLS 233 (460)
Q Consensus 191 ~~~~ea~~~aDiVilaV--p~~~~~~vl-~~i~~~l~~~~iIV~~~ 233 (460)
..+.+.+.++|+||.++ |......++ ++....++++.+||++.
T Consensus 249 ~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 249 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 01556678999999998 422111111 33445577899999886
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00022 Score=74.56 Aligned_cols=83 Identities=10% Similarity=0.046 Sum_probs=61.9
Q ss_pred cCCCeEEEECc----chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 125 ERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 125 ~~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
|+++||||||+ |.||..++..|.+...+.+|+ ++|+++++++.+.+. |. + .+.+++|.+++++
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~----------~-~~~~~~d~~ell~ 105 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQL----------K-HATGFDSLESFAQ 105 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTC----------T-TCEEESCHHHHHH
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCC----------C-cceeeCCHHHHhc
Confidence 45689999999 999999999998861126754 889999988887764 21 1 1346678988875
Q ss_pred --CCcEEEEccchhcHHHHHHH
Q 012596 199 --GADYCLHAMPVQFSSSFLEG 218 (460)
Q Consensus 199 --~aDiVilaVp~~~~~~vl~~ 218 (460)
+.|+|++|+|.....+++..
T Consensus 106 ~~~vD~V~I~tp~~~H~~~~~~ 127 (479)
T 2nvw_A 106 YKDIDMIVVSVKVPEHYEVVKN 127 (479)
T ss_dssp CTTCSEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEEEcCCcHHHHHHHHH
Confidence 68999999998765554443
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00029 Score=70.64 Aligned_cols=92 Identities=11% Similarity=0.149 Sum_probs=61.0
Q ss_pred CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCc
Q 012596 126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (460)
+++||||||+|.||.. .+..|.+.. +.+|+ +++++++++ .+.. ..+.+++|.+++++ +.|
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~---~~~~------------~~~~~~~~~~~ll~~~~vD 67 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLD-EYQISKIMTSRTEEV---KRDF------------PDAEVVHELEEITNDPAIE 67 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCT-TEEEEEEECSCHHHH---HHHC------------TTSEEESSTHHHHTCTTCC
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCC-CeEEEEEEcCCHHHH---HhhC------------CCCceECCHHHHhcCCCCC
Confidence 5689999999999997 566666542 26765 788988652 2221 02356678988887 689
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+|++|+|.....+++....+ .|..|+ +-|-+.
T Consensus 68 ~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla 99 (358)
T 3gdo_A 68 LVIVTTPSGLHYEHTMACIQ---AGKHVV-MEKPMT 99 (358)
T ss_dssp EEEECSCTTTHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred EEEEcCCcHHHHHHHHHHHH---cCCeEE-EecCCc
Confidence 99999998766555444332 354444 345433
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.58 E-value=8.9e-05 Score=77.18 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=60.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhh-cCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTA-LLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiV 203 (460)
..|||.|+|+|.+|..+|..|.+.| |+|+++|++++.++.+.+. +.. ...++-.-+ +.++++ +++||++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~--~~v~vId~d~~~~~~~~~~~~~~-~i~Gd~~~~------~~L~~Agi~~ad~~ 72 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGEN--NDITIVDKDGDRLRELQDKYDLR-VVNGHASHP------DVLHEAGAQDADML 72 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTT--EEEEEEESCHHHHHHHHHHSSCE-EEESCTTCH------HHHHHHTTTTCSEE
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHhcCcE-EEEEcCCCH------HHHHhcCCCcCCEE
Confidence 3589999999999999999999988 9999999999999888764 211 001110000 012232 5789999
Q ss_pred EEccchhcHHHHHHHhhh
Q 012596 204 LHAMPVQFSSSFLEGISD 221 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~ 221 (460)
+.++.++.+.-+.-.+++
T Consensus 73 ia~t~~De~Nl~~~~~Ak 90 (461)
T 4g65_A 73 VAVTNTDETNMAACQVAF 90 (461)
T ss_dssp EECCSCHHHHHHHHHHHH
T ss_pred EEEcCChHHHHHHHHHHH
Confidence 999888765544444443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=8.2e-05 Score=71.91 Aligned_cols=96 Identities=16% Similarity=0.266 Sum_probs=62.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVi 204 (460)
+.++|.|+|+|.||.+++..|++.| .+|++|+|+.++++++.+.... + . .+.+. +.+++.+ ++|+||
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~G--~~v~v~~R~~~~a~~l~~~~~~--~-~------~~~~~-~~~~~~~~~~DivI 185 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQP--Y-G------NIQAV-SMDSIPLQTYDLVI 185 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGG--G-S------CEEEE-EGGGCCCSCCSEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHccc--c-C------CeEEe-eHHHhccCCCCEEE
Confidence 3579999999999999999999999 8999999999888887654110 0 0 12222 3444323 899999
Q ss_pred EccchhcHHHHHHHh-hhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGI-SDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i-~~~l~~~~iIV~~~~ 234 (460)
.++|......+. .+ ...++++.+++++.-
T Consensus 186 n~t~~~~~~~~~-~i~~~~l~~~~~v~D~~y 215 (272)
T 1p77_A 186 NATSAGLSGGTA-SVDAEILKLGSAFYDMQY 215 (272)
T ss_dssp ECCCC--------CCCHHHHHHCSCEEESCC
T ss_pred ECCCCCCCCCCC-CCCHHHcCCCCEEEEeeC
Confidence 999965432221 11 112345677888764
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00011 Score=74.92 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=66.6
Q ss_pred cCCCeEEEECcch---HHHHHHHHHHhcCCCCeEE--EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 125 ERTNKVVVLGGGS---FGTAMAAHVANKKSQLKVY--MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 125 ~~~~kI~IIGaG~---mG~~~A~~La~~G~~~~V~--v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
|+++||||||+|. ||...+..+...+ +.+|+ ++|+++++++++.++ |.. ...+++|.+++++
T Consensus 10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~-~~~lva~v~d~~~~~a~~~a~~~g~~-----------~~~~~~~~~~ll~ 77 (398)
T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDN-TFVLVAGAFDIDPIRGSAFGEQLGVD-----------SERCYADYLSMFE 77 (398)
T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGG-SEEEEEEECCSSHHHHHHHHHHTTCC-----------GGGBCSSHHHHHH
T ss_pred cCcceEEEEcCCccchhHHHHHHHHhhCC-CeEEEEEEeCCCHHHHHHHHHHhCCC-----------cceeeCCHHHHHh
Confidence 3568999999999 9999998887765 25665 579999988887764 221 0124568888775
Q ss_pred C-------CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 199 G-------ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 199 ~-------aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+ .|+|++|+|.....+++....+ .|..|+ |-|-+.
T Consensus 78 ~~~~~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla 119 (398)
T 3dty_A 78 QEARRADGIQAVSIATPNGTHYSITKAALE---AGLHVV-CEKPLC 119 (398)
T ss_dssp HHTTCTTCCSEEEEESCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred cccccCCCCCEEEECCCcHHHHHHHHHHHH---CCCeEE-EeCCCc
Confidence 3 8999999998776555544433 344433 345443
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.55 E-value=9.2e-05 Score=72.06 Aligned_cols=96 Identities=9% Similarity=0.116 Sum_probs=65.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.+++.|+|+|.+|.+++..|++.| . +|++++|+.++++++.+..... ..+.+. +.+++..++|+||
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~~~~a~~la~~~~~~---------~~~~~~-~~~~l~~~aDiII 192 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQ--PASITVTNRTFAKAEQLAELVAAY---------GEVKAQ-AFEQLKQSYDVII 192 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTC--CSEEEEEESSHHHHHHHHHHHGGG---------SCEEEE-EGGGCCSCEEEEE
T ss_pred cCCEEEEECchHHHHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhcc---------CCeeEe-eHHHhcCCCCEEE
Confidence 3579999999999999999999998 5 8999999999888876642110 012222 3445447899999
Q ss_pred EccchhcHHHHHHHh-hhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGI-SDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i-~~~l~~~~iIV~~~~ 234 (460)
.++|..-..+.. .+ ...++++++++++.-
T Consensus 193 naTp~gm~~~~~-~l~~~~l~~~~~V~DlvY 222 (281)
T 3o8q_A 193 NSTSASLDGELP-AIDPVIFSSRSVCYDMMY 222 (281)
T ss_dssp ECSCCCC----C-SCCGGGEEEEEEEEESCC
T ss_pred EcCcCCCCCCCC-CCCHHHhCcCCEEEEecC
Confidence 999975322210 11 234566778888864
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.54 E-value=9.5e-05 Score=64.32 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=64.1
Q ss_pred CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
...+|+|||+ |.+|..++.+|.+.| ++ +|++++.+. +. .+ .++.+..+++++.+..|
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G--~~--v~~vnp~~~------~~--------~i-~G~~~~~sl~el~~~vD 72 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQG--YR--VLPVNPRFQ------GE--------EL-FGEEAVASLLDLKEPVD 72 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTT--CE--EEEECGGGT------TS--------EE-TTEECBSSGGGCCSCCS
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCC--CE--EEEeCCCcc------cC--------cC-CCEEecCCHHHCCCCCC
Confidence 4579999999 899999999999999 76 667776421 00 00 13455667888777899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++++++|...+.++++++.+.- .+.++ ++.|..
T Consensus 73 lavi~vp~~~~~~v~~~~~~~g-i~~i~--~~~g~~ 105 (140)
T 1iuk_A 73 ILDVFRPPSALMDHLPEVLALR-PGLVW--LQSGIR 105 (140)
T ss_dssp EEEECSCHHHHTTTHHHHHHHC-CSCEE--ECTTCC
T ss_pred EEEEEeCHHHHHHHHHHHHHcC-CCEEE--EcCCcC
Confidence 9999999988888887766532 23343 345555
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00022 Score=68.84 Aligned_cols=96 Identities=13% Similarity=0.174 Sum_probs=65.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi 204 (460)
+.+++.|+|+|.||.+++..|++.| .+|++++|+.++++.+.+.-.. + ..+.+ .+.+++. ..+|+||
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G--~~V~v~~R~~~~~~~la~~~~~--~-------~~~~~-~~~~~~~~~~~DivV 185 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRTVSRAEELAKLFAH--T-------GSIQA-LSMDELEGHEFDLII 185 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHTGG--G-------SSEEE-CCSGGGTTCCCSEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHhhc--c-------CCeeE-ecHHHhccCCCCEEE
Confidence 3579999999999999999999999 8999999999888877654110 0 01222 2333332 4899999
Q ss_pred EccchhcHHHHHHHh-hhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGI-SDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i-~~~l~~~~iIV~~~~ 234 (460)
.+++.....++ ..+ ...++++.+++++.-
T Consensus 186 n~t~~~~~~~~-~~i~~~~l~~~~~v~D~~y 215 (271)
T 1nyt_A 186 NATSSGISGDI-PAIPSSLIHPGIYCYDMFY 215 (271)
T ss_dssp ECCSCGGGTCC-CCCCGGGCCTTCEEEESCC
T ss_pred ECCCCCCCCCC-CCCCHHHcCCCCEEEEecc
Confidence 99996433211 112 123567788888764
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00018 Score=74.33 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=61.0
Q ss_pred CCCeEEEECc----chHHHHHHHHHHhc-CCCCeE-EEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 126 RTNKVVVLGG----GSFGTAMAAHVANK-KSQLKV-YMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGa----G~mG~~~A~~La~~-G~~~~V-~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
+++||||||+ |.||..++..|.+. . +.+| .++++++++++.+.+. |. + .+.+++|.+++++
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~-~~~lvav~d~~~~~~~~~a~~~g~----------~-~~~~~~~~~~ll~ 86 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSS-QFQITALYSPKIETSIATIQRLKL----------S-NATAFPTLESFAS 86 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTT-TEEEEEEECSSHHHHHHHHHHTTC----------T-TCEEESSHHHHHH
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCC-CeEEEEEEeCCHHHHHHHHHHcCC----------C-cceeeCCHHHHhc
Confidence 4579999999 99999999999886 2 2665 4889999888877764 21 1 2346678988875
Q ss_pred --CCcEEEEccchhcHHHHHHH
Q 012596 199 --GADYCLHAMPVQFSSSFLEG 218 (460)
Q Consensus 199 --~aDiVilaVp~~~~~~vl~~ 218 (460)
+.|+|++|+|.....+++..
T Consensus 87 ~~~vD~V~i~tp~~~H~~~~~~ 108 (438)
T 3btv_A 87 SSTIDMIVIAIQVASHYEVVMP 108 (438)
T ss_dssp CSSCSEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCcHHHHHHHHH
Confidence 68999999998765544433
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=6.2e-05 Score=70.34 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCCeEEEECcchHHHHHHHH--HHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAH--VANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~--La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
+.++|+|||+|++|..++.. +...| ++++ ++|.++++.... ..+. .+...+++++.+++.|+
T Consensus 84 ~~~rV~IIGAG~~G~~La~~~~~~~~g--~~iVg~~D~dp~k~g~~---------i~gv----~V~~~~dl~eli~~~D~ 148 (215)
T 2vt3_A 84 EMTDVILIGVGNLGTAFLHYNFTKNNN--TKISMAFDINESKIGTE---------VGGV----PVYNLDDLEQHVKDESV 148 (215)
T ss_dssp ---CEEEECCSHHHHHHHHCC--------CCEEEEEESCTTTTTCE---------ETTE----EEEEGGGHHHHCSSCCE
T ss_pred CCCEEEEEccCHHHHHHHHHHhcccCC--cEEEEEEeCCHHHHHhH---------hcCC----eeechhhHHHHHHhCCE
Confidence 34789999999999999994 33445 6655 789888533210 0011 23345678888876799
Q ss_pred EEEccchhcHHHHHHHhhh
Q 012596 203 CLHAMPVQFSSSFLEGISD 221 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~ 221 (460)
|++|+|+....++.+.+.+
T Consensus 149 ViIAvPs~~~~ei~~~l~~ 167 (215)
T 2vt3_A 149 AILTVPAVAAQSITDRLVA 167 (215)
T ss_dssp EEECSCHHHHHHHHHHHHH
T ss_pred EEEecCchhHHHHHHHHHH
Confidence 9999998777777766644
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00025 Score=72.47 Aligned_cols=95 Identities=13% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..++|+|||+|.||..++..|...| . +|++++|++++++.+.+. |.. . ...+++.+.+.++|+|
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G--~~~V~v~~r~~~ra~~la~~~g~~--~----------~~~~~l~~~l~~aDvV 231 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRG--VRAVLVANRTYERAVELARDLGGE--A----------VRFDELVDHLARSDVV 231 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHC--CSEEEEECSSHHHHHHHHHHHTCE--E----------CCGGGHHHHHHTCSEE
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHcCCc--e----------ecHHhHHHHhcCCCEE
Confidence 4689999999999999999999988 6 899999999887655443 321 0 0013566777899999
Q ss_pred EEccchhc-H--HHHHHH-h-hhcCCCCCeEEEecc
Q 012596 204 LHAMPVQF-S--SSFLEG-I-SDYVDPGLPFISLSK 234 (460)
Q Consensus 204 ilaVp~~~-~--~~vl~~-i-~~~l~~~~iIV~~~~ 234 (460)
|.|++... + .+.++. + +..-.++.+++++..
T Consensus 232 i~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 232 VSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp EECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred EEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence 99998643 2 233433 2 111123456777654
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0001 Score=77.09 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=49.6
Q ss_pred CeEEEECcchHHHHH--HHHHHhc----CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 128 NKVVVLGGGSFGTAM--AAHVANK----KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~--A~~La~~----G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|||+|||+|+.|.+. ...|+.. +...+|.++|.++++++........ .......+..+..++|.++++++||
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~--~~~~~~~~~~i~~t~d~~eAl~gAD 78 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARK--YVEELNSPVKVVKTESLDEAIEGAD 78 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHH--HHHHHTCCCEEEEESCHHHHHTTCS
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHH--HHHHcCCCeEEEEeCCHHHHhCCCC
Confidence 799999999988653 2234432 1125799999999866432211000 0000012235778899999999999
Q ss_pred EEEEcc
Q 012596 202 YCLHAM 207 (460)
Q Consensus 202 iVilaV 207 (460)
+||++.
T Consensus 79 ~Vi~~~ 84 (477)
T 3u95_A 79 FIINTA 84 (477)
T ss_dssp EEEECC
T ss_pred EEEECc
Confidence 999986
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00013 Score=68.48 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=63.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hhh-cCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KTA-LLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea-~~~aDi 202 (460)
.++|.|+|+|.+|..++..|.+.| + |++++++++.++.+. .+....+ .+ .++. .++ ++++|.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g--~-v~vid~~~~~~~~~~-~~~~~i~-gd---------~~~~~~l~~a~i~~ad~ 74 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVRKKVLR-SGANFVH-GD---------PTRVSDLEKANVRGARA 74 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSE--E-EEEESCGGGHHHHHH-TTCEEEE-SC---------TTCHHHHHHTTCTTCSE
T ss_pred CCEEEEECCChHHHHHHHHHHhCC--e-EEEEECCHHHHHHHh-cCCeEEE-cC---------CCCHHHHHhcCcchhcE
Confidence 578999999999999999999988 8 999999998887776 4421110 00 0122 233 678999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||++++.+...-.+-...+.+.++..+|...
T Consensus 75 vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 75 VIVDLESDSETIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp EEECCSCHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred EEEcCCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence 9999998765444444444445554444433
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00052 Score=66.91 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=73.1
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCc
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (460)
.+.+||+|+|+ |.||..++..+.+.| +++ ++..++... |. . ..++.+..+++++.+ ++|
T Consensus 5 ~~~~~VaVvGasG~~G~~~~~~l~~~g--~~~-v~~VnP~~~------g~--~-------i~G~~vy~sl~el~~~~~~D 66 (288)
T 1oi7_A 5 NRETRVLVQGITGREGQFHTKQMLTYG--TKI-VAGVTPGKG------GM--E-------VLGVPVYDTVKEAVAHHEVD 66 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHT--CEE-EEEECTTCT------TC--E-------ETTEEEESSHHHHHHHSCCS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHcC--CeE-EEEECCCCC------Cc--e-------ECCEEeeCCHHHHhhcCCCC
Confidence 45689999998 999999999999888 773 344444210 00 0 114567778888877 899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCC-eEEEeccCCccchhhhHHHHHHH
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGL-PFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~-iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
++++++|.....+++++..+. +. .+|..+.|+..+..+.+.+..++
T Consensus 67 v~Ii~vp~~~~~~~~~ea~~~---Gi~~vVi~t~G~~~~~~~~l~~~a~~ 113 (288)
T 1oi7_A 67 ASIIFVPAPAAADAALEAAHA---GIPLIVLITEGIPTLDMVRAVEEIKA 113 (288)
T ss_dssp EEEECCCHHHHHHHHHHHHHT---TCSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999988888776552 32 36667888876543445455444
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00032 Score=70.34 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=64.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC------CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS------QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL- 198 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~------~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~- 198 (460)
..||||||+|.||...+..+.+... +.+|+ ++|+++++++++.++... ..+.+|.+++++
T Consensus 6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~------------~~~~~d~~~ll~~ 73 (390)
T 4h3v_A 6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW------------STTETDWRTLLER 73 (390)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC------------SEEESCHHHHTTC
T ss_pred cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC------------CcccCCHHHHhcC
Confidence 3689999999999988887765320 12444 789999988887764210 145678999875
Q ss_pred -CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 199 -GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 199 -~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
+.|+|++|+|.....++.....+ .|.. |-|-|-+..
T Consensus 74 ~~iDaV~I~tP~~~H~~~~~~al~---aGkh-Vl~EKPla~ 110 (390)
T 4h3v_A 74 DDVQLVDVCTPGDSHAEIAIAALE---AGKH-VLCEKPLAN 110 (390)
T ss_dssp TTCSEEEECSCGGGHHHHHHHHHH---TTCE-EEEESSSCS
T ss_pred CCCCEEEEeCChHHHHHHHHHHHH---cCCC-ceeecCccc
Confidence 57999999998766555443332 3443 335555544
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00036 Score=70.05 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=61.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcC------CCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKK------SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL- 198 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G------~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~- 198 (460)
..||||||+|.||...+..+.... .+.+|+ ++|+++++++++.++... .++++|.+++++
T Consensus 25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~------------~~~y~d~~ell~~ 92 (393)
T 4fb5_A 25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF------------EKATADWRALIAD 92 (393)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC------------SEEESCHHHHHHC
T ss_pred CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC------------CeecCCHHHHhcC
Confidence 358999999999998777664321 014555 889999888887764210 145678988875
Q ss_pred -CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 199 -GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 199 -~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
+.|+|++|+|...-.++.....+ .|.- |-|-|-+..
T Consensus 93 ~~iDaV~IatP~~~H~~~a~~al~---aGkh-Vl~EKPla~ 129 (393)
T 4fb5_A 93 PEVDVVSVTTPNQFHAEMAIAALE---AGKH-VWCEKPMAP 129 (393)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHH---TTCE-EEECSCSCS
T ss_pred CCCcEEEECCChHHHHHHHHHHHh---cCCe-EEEccCCcc
Confidence 57999999998766555443333 2443 334565544
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00073 Score=66.65 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=63.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHhc-CCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEe--CCHHhhcCCCcE
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANK-KSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIAT--TDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~-G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~--~~~~ea~~~aDi 202 (460)
|||+||| +|.+|..++..|+.. +...++.++|+++. ..+.+.-.+. ..+..+... ++..+++++||+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~--------~~~~~v~~~~~~~~~~~~~~aDi 72 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHI--------PTAVKIKGFSGEDATPALEGADV 72 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTS--------CSSEEEEEECSSCCHHHHTTCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCC--------CCCceEEEecCCCcHHHhCCCCE
Confidence 7999999 899999999999876 54468999999862 1111111111 112223321 244566899999
Q ss_pred EEEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 203 CLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 203 VilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
||++.... .+.++.+.+.++. ++.+++..+|-+
T Consensus 73 vii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPv 121 (312)
T 3hhp_A 73 VLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPV 121 (312)
T ss_dssp EEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCH
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEecCcc
Confidence 99987321 1334445566654 577888887743
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00049 Score=67.57 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=63.1
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r--~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
|||+|+| +|.+|..++..|+..|...++.++|+ ++++++.....-.. ... +..++.+..+..++++++|+||
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~--~~~---~~~~~~v~~~~~~a~~~aDvVi 75 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIA---YDSNTRVRQGGYEDTAGSDVVV 75 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHH--HHT---TTCCCEEEECCGGGGTTCSEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHH--HHh---hCCCcEEEeCCHHHhCCCCEEE
Confidence 6999999 99999999999998774347999999 77554322111000 000 1112233222356789999999
Q ss_pred Eccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++.... .+.++++.+.++ .++..++..+|-+
T Consensus 76 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv 122 (303)
T 1o6z_A 76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV 122 (303)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSH
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChH
Confidence 986421 133444555554 4567777777643
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00036 Score=70.45 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=64.2
Q ss_pred CCCeEEEEC-cchHHHH-HH----HHHHhcCCCCeE----------EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE
Q 012596 126 RTNKVVVLG-GGSFGTA-MA----AHVANKKSQLKV----------YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~-~A----~~La~~G~~~~V----------~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a 189 (460)
+.+||+||| +|.||.. .+ ..+.+.+. ..+ .++++++++++.+.+... . ..+
T Consensus 5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~-~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~---------~---~~~ 71 (383)
T 3oqb_A 5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGG-VRLKNGDRIMPDPILVGRSAEKVEALAKRFN---------I---ARW 71 (383)
T ss_dssp EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTS-EECTTSCEEEEEEEEECSSSHHHHHHHHHTT---------C---CCE
T ss_pred ceeEEEEEeccchhhhhhhHHHHHHHHhhcCc-eeecCCcccceeeEEEcCCHHHHHHHHHHhC---------C---Ccc
Confidence 457999999 9999998 66 66665541 222 389999998888876421 0 035
Q ss_pred eCCHHhhcCC--CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 190 TTDAKTALLG--ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 190 ~~~~~ea~~~--aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++|.++++++ .|+|++|+|.....+++... ++.|..|+ +-|-+.
T Consensus 72 ~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~a---l~~Gk~V~-~EKP~a 117 (383)
T 3oqb_A 72 TTDLDAALADKNDTMFFDAATTQARPGLLTQA---INAGKHVY-CEKPIA 117 (383)
T ss_dssp ESCHHHHHHCSSCCEEEECSCSSSSHHHHHHH---HTTTCEEE-ECSCSC
T ss_pred cCCHHHHhcCCCCCEEEECCCchHHHHHHHHH---HHCCCeEE-EcCCCC
Confidence 5789888754 89999999986655544333 33455555 666443
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00037 Score=70.48 Aligned_cols=106 Identities=11% Similarity=0.207 Sum_probs=68.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..||+|||+| +|...+..+.+...+.+++ +++++.++++++.++. ++...+|.++++++.|+|++
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~-------------gv~~~~~~~~l~~~~D~v~i 72 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF-------------GIPLYTSPEQITGMPDIACI 72 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT-------------TCCEESSGGGCCSCCSEEEE
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh-------------CCCEECCHHHHhcCCCEEEE
Confidence 5799999999 8998888887653225665 7899999888887652 13356789999999999999
Q ss_pred ccchhcH----HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 206 AMPVQFS----SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 206 aVp~~~~----~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
++|.... .++.... ++.|.-|+ +-|-+..+..+.+.+..++
T Consensus 73 ~~p~~~h~~~~~~~a~~a---l~aGkhVl-~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 73 VVRSTVAGGAGTQLARHF---LARGVHVI-QEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp CCC--CTTSHHHHHHHHH---HHTTCEEE-EESCCCHHHHHHHHHHHHH
T ss_pred ECCCcccchhHHHHHHHH---HHcCCcEE-EecCCCHHHHHHHHHHHHH
Confidence 9997543 3333322 23344333 3454544434444444443
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0014 Score=64.02 Aligned_cols=107 Identities=15% Similarity=0.176 Sum_probs=74.5
Q ss_pred hccCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C
Q 012596 123 ILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G 199 (460)
Q Consensus 123 ~~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~ 199 (460)
++.+..+|+|+|+ |.||...+..|.+.| ++ .++..++.+. |. .+ .++.+..+++++.+ +
T Consensus 9 l~~~~~~v~V~Gasg~~G~~~~~~l~~~g--~~-~V~~VnP~~~------g~--------~i-~G~~vy~sl~el~~~~~ 70 (294)
T 2yv1_A 9 LLDENTKAIVQGITGRQGSFHTKKMLECG--TK-IVGGVTPGKG------GQ--------NV-HGVPVFDTVKEAVKETD 70 (294)
T ss_dssp SSCTTCCEEEETTTSHHHHHHHHHHHHTT--CC-EEEEECTTCT------TC--------EE-TTEEEESSHHHHHHHHC
T ss_pred HhCCCCEEEEECCCCCHHHHHHHHHHhCC--Ce-EEEEeCCCCC------Cc--------eE-CCEeeeCCHHHHhhcCC
Confidence 3444578999998 999999999999988 66 4555555210 00 00 14567788988877 8
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCC-eEEEeccCCccchhhhHHHHHHH
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGL-PFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~-iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
+|++++++|...+.+++++..+. +. .+|.++.|+..+..+.+.+..++
T Consensus 71 ~Dv~ii~vp~~~~~~~v~ea~~~---Gi~~vVi~t~G~~~~~~~~l~~~A~~ 119 (294)
T 2yv1_A 71 ANASVIFVPAPFAKDAVFEAIDA---GIELIVVITEHIPVHDTMEFVNYAED 119 (294)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHT---TCSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred CCEEEEccCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999988888776553 33 36667888876543445555544
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=65.99 Aligned_cols=105 Identities=20% Similarity=0.300 Sum_probs=68.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCC-C----CeEEEEeCCHH--HHHHHH--hhcCCCccCCCCCCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKS-Q----LKVYMLMRDPA--VCQSIN--EKHCNCRYFPEQKLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~-~----~~V~v~~r~~~--~~~~l~--~~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (460)
..||+|+|+ |.+|.+++..|+.... + .++.++|..+. .++-+. -.+. ...+...+...++..++
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~------~~~~~~~~~~~~~~~~a 97 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDC------AFPLLDKVVVTADPRVA 97 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHT------TCTTEEEEEEESCHHHH
T ss_pred CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhc------CccCCCcEEEcCChHHH
Confidence 469999996 9999999999997642 1 27999998763 222111 1111 11222345677888889
Q ss_pred cCCCcEEEEcc--chh--------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 197 LLGADYCLHAM--PVQ--------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 197 ~~~aDiVilaV--p~~--------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+++||+||++- |-. .++++.+.|.++..++.+|+.++|-++
T Consensus 98 ~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd 154 (345)
T 4h7p_A 98 FDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPAN 154 (345)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcc
Confidence 99999999964 311 134444556666667887877777443
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00073 Score=69.76 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=68.7
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhc--------CCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~--------G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
||+.+||+|||+|.||..++..|.++ |.+.+|. ++++++++.+.+.. + ...++|++
T Consensus 7 MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~-~--------------~~~~~d~~ 71 (444)
T 3mtj_A 7 GMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG-G--------------LPLTTNPF 71 (444)
T ss_dssp SCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT-T--------------CCEESCTH
T ss_pred hhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc-c--------------CcccCCHH
Confidence 55668999999999999999887642 3225554 77888876655421 1 23567888
Q ss_pred hhcC--CCcEEEEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 195 TALL--GADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 195 ea~~--~aDiVilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
+.++ +.|+|++++|. ....+.+. ..++.|.-|++.-++........+.+..++
T Consensus 72 ell~d~diDvVve~tp~~~~h~~~~~---~AL~aGKhVvtenkal~a~~~~eL~~~A~~ 127 (444)
T 3mtj_A 72 DVVDDPEIDIVVELIGGLEPARELVM---QAIANGKHVVTANKHLVAKYGNEIFAAAQA 127 (444)
T ss_dssp HHHTCTTCCEEEECCCSSTTHHHHHH---HHHHTTCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEcCCCchHHHHHHH---HHHHcCCEEEECCcccCHHHHHHHHHHHHH
Confidence 8776 57999999996 44444433 233457777765553332223334444433
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00032 Score=67.88 Aligned_cols=95 Identities=12% Similarity=0.131 Sum_probs=65.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil 205 (460)
.+++.|+|+|.+|.+++..|++.|. .+|++++|+.++++++.+.... ..+.+. +.++.. .++|+||-
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~----------~~~~~~-~~~~l~~~~~DivIn 187 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQAGP-SELVIANRDMAKALALRNELDH----------SRLRIS-RYEALEGQSFDIVVN 187 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHCC----------TTEEEE-CSGGGTTCCCSEEEE
T ss_pred CCEEEEECccHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhcc----------CCeeEe-eHHHhcccCCCEEEE
Confidence 5799999999999999999999982 3899999999998888764211 012222 222322 68999999
Q ss_pred ccchhcHHHHHHHh-hhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGI-SDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i-~~~l~~~~iIV~~~~ 234 (460)
++|..-..+.. .+ ...++++.+++++.-
T Consensus 188 aTp~gm~~~~~-~i~~~~l~~~~~V~DlvY 216 (272)
T 3pwz_A 188 ATSASLTADLP-PLPADVLGEAALAYELAY 216 (272)
T ss_dssp CSSGGGGTCCC-CCCGGGGTTCSEEEESSC
T ss_pred CCCCCCCCCCC-CCCHHHhCcCCEEEEeec
Confidence 99964321100 01 234667888888863
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00055 Score=69.09 Aligned_cols=110 Identities=10% Similarity=0.108 Sum_probs=65.8
Q ss_pred chhccCCCeEEEEC-cchHHHHHHHHHHhcCCC---CeEEEEeCCHH----HHHHHH--hhcCCCccCCCCCCCCceEEe
Q 012596 121 TDILERTNKVVVLG-GGSFGTAMAAHVANKKSQ---LKVYMLMRDPA----VCQSIN--EKHCNCRYFPEQKLPENVIAT 190 (460)
Q Consensus 121 ~~~~~~~~kI~IIG-aG~mG~~~A~~La~~G~~---~~V~v~~r~~~----~~~~l~--~~g~~~~~~~~~~l~~~i~a~ 190 (460)
.+.|+..+||+|+| +|.+|.+++..|+..+.- .++.+++.+.+ +++... -.+.. ..+..++.+.
T Consensus 26 ~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~------~p~~~~v~i~ 99 (375)
T 7mdh_A 26 TKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL------YPLLREVSIG 99 (375)
T ss_dssp ---CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT------CTTEEEEEEE
T ss_pred HhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhh------hhhcCCcEEe
Confidence 34565678999999 799999999999987641 13766554322 222111 11111 0111345666
Q ss_pred CCHHhhcCCCcEEEEcc--ch---h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 191 TDAKTALLGADYCLHAM--PV---Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 191 ~~~~ea~~~aDiVilaV--p~---~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++..+++++||+||++- |. . .+.++.+.|.++..++.+++.++|-+
T Consensus 100 ~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPv 161 (375)
T 7mdh_A 100 IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPC 161 (375)
T ss_dssp SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred cCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCch
Confidence 67777899999999964 21 1 12333344556556778888888744
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00072 Score=69.34 Aligned_cols=113 Identities=11% Similarity=0.180 Sum_probs=70.2
Q ss_pred CCeEEEECcchHHHHH--HHHHHh--cCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAM--AAHVAN--KKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~--A~~La~--~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+|||+|||+|.+ .+. ...|+. .+. ..+|.++|.++++++.......... ... ..+..++|..+++++||
T Consensus 2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~---~~~--~~v~~t~d~~~al~~AD 75 (417)
T 1up7_A 2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLV---KDR--FKVLISDTFEGAVVDAK 75 (417)
T ss_dssp CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHH---TTS--SEEEECSSHHHHHTTCS
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHh---hCC--eEEEEeCCHHHHhCCCC
Confidence 589999999995 222 223454 333 3689999999987654322110000 001 24666778878899999
Q ss_pred EEEEccchh------------------------------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHH
Q 012596 202 YCLHAMPVQ------------------------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS 245 (460)
Q Consensus 202 iVilaVp~~------------------------------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~ 245 (460)
+||++.-.. .+.++++.|.++. ++.++..+|-++ .+.
T Consensus 76 ~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvd-----i~t 148 (417)
T 1up7_A 76 YVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSG-----HIT 148 (417)
T ss_dssp EEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHH-----HHH
T ss_pred EEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHH-----HHH
Confidence 999988211 1345556676765 789999998543 334
Q ss_pred HHHHHHh
Q 012596 246 QIIPQAL 252 (460)
Q Consensus 246 e~l~~~l 252 (460)
+.+.+..
T Consensus 149 ~a~~k~~ 155 (417)
T 1up7_A 149 EFVRNYL 155 (417)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 5555443
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00068 Score=70.52 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=68.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++++|+|+|.+|..+|..|+..| .+|+++++++...+.....+. . ..+.++++..+|+|+.
T Consensus 264 ~GKtVvVtGaGgIG~aiA~~Laa~G--A~Viv~D~~~~~a~~Aa~~g~--------------d-v~~lee~~~~aDvVi~ 326 (488)
T 3ond_A 264 AGKVAVVAGYGDVGKGCAAALKQAG--ARVIVTEIDPICALQATMEGL--------------Q-VLTLEDVVSEADIFVT 326 (488)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------E-ECCGGGTTTTCSEEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHhCC--------------c-cCCHHHHHHhcCEEEe
Confidence 4689999999999999999999999 899999999887766655442 1 2356778889999998
Q ss_pred ccchhc-HHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQF-SSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~-~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+..... +. .+....++++.+|+++..+
T Consensus 327 atG~~~vl~---~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 327 TTGNKDIIM---LDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp CSSCSCSBC---HHHHTTSCTTEEEEESSST
T ss_pred CCCChhhhh---HHHHHhcCCCeEEEEcCCC
Confidence 876433 21 1234557788888888765
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00056 Score=68.60 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=54.8
Q ss_pred CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--Cc
Q 012596 126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD 201 (460)
+++||||||+|.||.. .+..|.+.. +.+|+ +++++++++ .+. + ..+.+.+|.++++++ .|
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~---~~~-----~-------~~~~~~~~~~~ll~~~~vD 67 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNP-HFELYKIVERSKELS---KER-----Y-------PQASIVRSFKELTEDPEID 67 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCT-TEEEEEEECSSCCGG---GTT-----C-------TTSEEESCSHHHHTCTTCC
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCC-CeEEEEEEcCCHHHH---HHh-----C-------CCCceECCHHHHhcCCCCC
Confidence 5689999999999997 677776652 26765 788887542 111 0 124567789998875 89
Q ss_pred EEEEccchhcHHHHHHHh
Q 012596 202 YCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i 219 (460)
+|++|+|.....+++...
T Consensus 68 ~V~i~tp~~~H~~~~~~a 85 (362)
T 3fhl_A 68 LIVVNTPDNTHYEYAGMA 85 (362)
T ss_dssp EEEECSCGGGHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHH
Confidence 999999987665554443
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0003 Score=67.91 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=63.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+++.|||+|.||.+++..|++.| .+|++++|+.++++++.+.+. .+. +.++ +.++|+||-|
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G--~~v~V~nRt~~ka~~la~~~~--------------~~~-~~~~-l~~~DiVIna 179 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQG--LQVSVLNRSSRGLDFFQRLGC--------------DCF-MEPP-KSAFDLIINA 179 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTHHHHHHHTC--------------EEE-SSCC-SSCCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCC--------------eEe-cHHH-hccCCEEEEc
Confidence 579999999999999999999999 899999999998888773331 111 2223 2489999999
Q ss_pred cchhcHH-HHH--HHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSS-SFL--EGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~-~vl--~~i~~~l~~~~iIV~~~~ 234 (460)
+|..-.. ..+ +.+...++++.+++++.-
T Consensus 180 Tp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY 210 (269)
T 3phh_A 180 TSASLHNELPLNKEVLKGYFKEGKLAYDLAY 210 (269)
T ss_dssp CTTCCCCSCSSCHHHHHHHHHHCSEEEESCC
T ss_pred ccCCCCCCCCCChHHHHhhCCCCCEEEEeCC
Confidence 9963110 001 112223456789999875
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0004 Score=67.22 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=83.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
++|||+|+|+ |.||..++..+.+.. +++|+ +++++++... +.....+-+. .+..+.+++|+++++.++|+|
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~-~~elva~~d~~~~~~~-----g~d~~~~~g~-~~~~v~~~~dl~~~l~~~DvV 76 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALE-GVQLGAALEREGSSLL-----GSDAGELAGA-GKTGVTVQSSLDAVKDDFDVF 76 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHST-TEECCCEECCTTCTTC-----SCCTTCSSSS-SCCSCCEESCSTTTTTSCSEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCchhhh-----hhhHHHHcCC-CcCCceecCCHHHHhcCCCEE
Confidence 4589999998 999999999887542 27777 7777653110 1110000000 012345567888888899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
|-++......+.+.... +.|..+|..+.|+..+.. +.+.+.-.. ..++..|++...+..
T Consensus 77 IDft~p~~~~~~~~~a~---~~G~~vVigTtG~~~e~~----~~L~~~a~~----~~vv~a~N~siGvn~---------- 135 (273)
T 1dih_A 77 IDFTRPEGTLNHLAFCR---QHGKGMVIGTTGFDEAGK----QAIRDAAAD----IAIVFAANFSVGVNV---------- 135 (273)
T ss_dssp EECSCHHHHHHHHHHHH---HTTCEEEECCCCCCHHHH----HHHHHHTTT----SCEEECSCCCHHHHH----------
T ss_pred EEcCChHHHHHHHHHHH---hCCCCEEEECCCCCHHHH----HHHHHhcCC----CCEEEEecCcHHHHH----------
Confidence 95555444444443333 346667766668765432 333332111 236667765442210
Q ss_pred CCHHHHHHHHHHHhcCCceEEE
Q 012596 284 KDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
-.+.++.+.+.|. .++.++.
T Consensus 136 -~~~l~~~aa~~~~-~~~diei 155 (273)
T 1dih_A 136 -MLKLLEKAAKVMG-DYTDIEI 155 (273)
T ss_dssp -HHHHHHHHHHHHT-TTSEEEE
T ss_pred -HHHHHHHHHHhcC-CCCCEEE
Confidence 1245667777775 3556554
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00045 Score=68.92 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCeEEEECcchHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCC--Cc
Q 012596 127 TNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLG--AD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~-~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD 201 (460)
++||||||+|.||. ..+..|.+.. +.+|+ +++++ ..+++.+. +. .++.+++|+++++.+ .|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~--~~~~~a~~~~~-----------~~~~~~~~~~~ll~~~~~D 67 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRE-TLEVKTIFDLH--VNEKAAAPFKE-----------KGVNFTADLNELLTDPEIE 67 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCT-TEEEEEEECTT--CCHHHHHHHHT-----------TTCEEESCTHHHHSCTTCC
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCC-CeEEEEEECCC--HHHHHHHhhCC-----------CCCeEECCHHHHhcCCCCC
Confidence 47999999999999 4555565542 26765 77887 23334332 11 124567789998875 89
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+|++|+|.....+++....+ .|..|+ +-|-+.
T Consensus 68 ~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a 99 (349)
T 3i23_A 68 LITICTPAHTHYDLAKQAIL---AGKSVI-VEKPFC 99 (349)
T ss_dssp EEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred EEEEeCCcHHHHHHHHHHHH---cCCEEE-EECCCc
Confidence 99999998766555444333 354444 355444
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00044 Score=68.83 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|||+|.+|+.++..|++.|. -+++++|++.
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~aGV-g~ItlvD~D~ 68 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGT 68 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred hCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCE
Confidence 35899999999999999999999996 4799998764
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00053 Score=67.64 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=59.9
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHH-HHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhc---
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAV-CQSINEK-HCNCRYFPEQKLPENVIATTDAKTAL--- 197 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V-~v~~r~~~~-~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~--- 197 (460)
|++++||+|||+|.||..++..|.++..+.++ .++++++++ ...+.+. |.. ...++.++++
T Consensus 1 M~~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~-------------~~~~~~e~ll~~~ 67 (312)
T 1nvm_B 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVT-------------TTYAGVEGLIKLP 67 (312)
T ss_dssp CCSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCC-------------EESSHHHHHHHSG
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCC-------------cccCCHHHHHhcc
Confidence 44568999999999999999999662212454 467888765 4554432 211 1223555553
Q ss_pred --CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 198 --LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 198 --~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+.|+||+|+|.....+........ ++|..+++..
T Consensus 68 ~~~~iDvV~~atp~~~h~~~a~~al~a-~~Gk~Vi~ek 104 (312)
T 1nvm_B 68 EFADIDFVFDATSASAHVQNEALLRQA-KPGIRLIDLT 104 (312)
T ss_dssp GGGGEEEEEECSCHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred CCCCCcEEEECCChHHHHHHHHHHHHh-CCCCEEEEcC
Confidence 3589999999976555544443332 1266666643
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0026 Score=62.27 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=72.8
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C-C
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G-A 200 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~-a 200 (460)
.+..+|+|+|+ |.||......|.+.| ++ .++..++.+. |. . ..++.+..+++++.+ . +
T Consensus 11 ~~~~~vvV~Gasg~~G~~~~~~l~~~g--~~-~v~~VnP~~~------g~--------~-i~G~~vy~sl~el~~~~~~~ 72 (297)
T 2yv2_A 11 DSETRVLVQGITGREGSFHAKAMLEYG--TK-VVAGVTPGKG------GS--------E-VHGVPVYDSVKEALAEHPEI 72 (297)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHHT--CE-EEEEECTTCT------TC--------E-ETTEEEESSHHHHHHHCTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHhCC--Cc-EEEEeCCCCC------Cc--------e-ECCEeeeCCHHHHhhcCCCC
Confidence 34578899998 999999999999888 77 4445444210 00 0 014567788888765 5 9
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCC-eEEEeccCCccchhhhHHHHHHH
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGL-PFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~-iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
|++++++|...+.+++++..+. +. .+|.++.|+..+..+.+.+..++
T Consensus 73 DvaIi~vp~~~~~~~v~ea~~~---Gi~~vVi~t~G~~~~~~~~l~~~A~~ 120 (297)
T 2yv2_A 73 NTSIVFVPAPFAPDAVYEAVDA---GIRLVVVITEGIPVHDTMRFVNYARQ 120 (297)
T ss_dssp CEEEECCCGGGHHHHHHHHHHT---TCSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred CEEEEecCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999998888877653 33 36667888876544455555544
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00072 Score=70.43 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=55.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
++++|.|+|+|.+|.+++..|++. | ++|++++|+.++++.+.+.. ..... .+ .+.-.+++.++++++|+||
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g--~~V~v~~R~~~ka~~la~~~-~~~~~---~~--D~~d~~~l~~~l~~~DvVI 93 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDD--INVTVACRTLANAQALAKPS-GSKAI---SL--DVTDDSALDKVLADNDVVI 93 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTT--EEEEEEESSHHHHHHHHGGG-TCEEE---EC--CTTCHHHHHHHHHTSSEEE
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHhc-CCcEE---EE--ecCCHHHHHHHHcCCCEEE
Confidence 357899999999999999999998 5 79999999999888877541 11000 00 0000013445667899999
Q ss_pred EccchhcH
Q 012596 205 HAMPVQFS 212 (460)
Q Consensus 205 laVp~~~~ 212 (460)
.++|....
T Consensus 94 n~tp~~~~ 101 (467)
T 2axq_A 94 SLIPYTFH 101 (467)
T ss_dssp ECSCGGGH
T ss_pred ECCchhhh
Confidence 99997543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00041 Score=69.45 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=59.7
Q ss_pred ccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 124 ~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
||+++||+|+| .|.+|..+.+.|.+.. ..+++.+.+..+...++.+... .+.+. ..+.+. +.++ +.++|+
T Consensus 1 M~~~~kV~IiGAtG~iG~~llr~L~~~p-~~elv~v~s~~~~g~~~~~~~~---~~~g~---~~~~~~-~~~~-~~~vDv 71 (345)
T 2ozp_A 1 MTGKKTLSIVGASGYAGGEFLRLALSHP-YLEVKQVTSRRFAGEPVHFVHP---NLRGR---TNLKFV-PPEK-LEPADI 71 (345)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHTCT-TEEEEEEBCSTTTTSBGGGTCG---GGTTT---CCCBCB-CGGG-CCCCSE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHcCC-CcEEEEEECchhhCchhHHhCc---hhcCc---cccccc-chhH-hcCCCE
Confidence 45568999999 6999999999999765 2477766554321111111000 01110 011111 2333 578999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
||+|+|.....+...... +.|..+|+++.-.
T Consensus 72 V~~a~g~~~s~~~a~~~~---~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 72 LVLALPHGVFAREFDRYS---ALAPVLVDLSADF 102 (345)
T ss_dssp EEECCCTTHHHHTHHHHH---TTCSEEEECSSTT
T ss_pred EEEcCCcHHHHHHHHHHH---HCCCEEEEcCccc
Confidence 999999887666554443 4578899987533
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00032 Score=71.70 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=56.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCC--CcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPENVIATTDAKTALLG--ADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~--aDi 202 (460)
|+||+|+|+|.+|..++..|++.|.- .+|++++|+.++++++.+.-... .-+... ....+.-.++.++++++ +|+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~-~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAK-GYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHT-TCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhh-cCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 47999999999999999999998721 28999999999887776531000 000000 00000001234455555 899
Q ss_pred EEEccchhcHHHHHH
Q 012596 203 CLHAMPVQFSSSFLE 217 (460)
Q Consensus 203 VilaVp~~~~~~vl~ 217 (460)
||.+++......+++
T Consensus 80 Vin~ag~~~~~~v~~ 94 (405)
T 4ina_A 80 VLNIALPYQDLTIME 94 (405)
T ss_dssp EEECSCGGGHHHHHH
T ss_pred EEECCCcccChHHHH
Confidence 999998765444443
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00045 Score=68.77 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=55.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCc-cCCCCC--C-CCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCR-YFPEQK--L-PENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~-~~~~~~--l-~~~i~a~~~~~ea~~~a 200 (460)
|+||||+|+|.||..+++.|.+.. +.+|+ +.+++++.+..+.+. |.... .+++.. + ...+.+..++++++.++
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~-~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~v 80 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQD-DMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV 80 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCC-CCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCC
Confidence 469999999999999999998764 25654 567776666555432 31100 000000 0 00113345788877899
Q ss_pred cEEEEccchhcHHHHH
Q 012596 201 DYCLHAMPVQFSSSFL 216 (460)
Q Consensus 201 DiVilaVp~~~~~~vl 216 (460)
|+|++|+|.....+..
T Consensus 81 DvV~~aTp~~~h~~~a 96 (334)
T 2czc_A 81 DIIVDATPGGIGAKNK 96 (334)
T ss_dssp SEEEECCSTTHHHHHH
T ss_pred CEEEECCCccccHHHH
Confidence 9999999976544433
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00038 Score=69.99 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=66.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--eCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiVi 204 (460)
..+|.|+|+|.+|...+..+...| .+|++++|++++.+.+.+.+.... .... ..+..+.+.++|+||
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGSRV---------ELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGGGS---------EEEECCHHHHHHHHHTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCcee---------EeeeCCHHHHHHHHcCCCEEE
Confidence 479999999999999999999998 799999999998888776542100 0000 013445567899999
Q ss_pred EccchhcH--HH-HHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFS--SS-FLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~--~~-vl~~i~~~l~~~~iIV~~~ 233 (460)
-|++.... .. +.+...+.++++..++++.
T Consensus 236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 99964320 00 1123345567888888875
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00045 Score=67.23 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDi 202 (460)
+.+++.|+|+|.+|.+++..|++.| . +|++++|+.++++++.+.-.. .+ ++ ..+...+ ++.+.++++|+
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G--~~~v~i~~R~~~~a~~la~~~~~-~~-~~----~~i~~~~~~~l~~~l~~~Di 197 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHG--VQKLQVADLDTSRAQALADVINN-AV-GR----EAVVGVDARGIEDVIAAADG 197 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSSHHHHHHHHHHHHH-HH-TS----CCEEEECSTTHHHHHHHSSE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHh-hc-CC----ceEEEcCHHHHHHHHhcCCE
Confidence 3579999999999999999999998 6 799999999988776543100 00 00 1133333 67777789999
Q ss_pred EEEccchhcHHHHHHHh-hhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGI-SDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i-~~~l~~~~iIV~~~ 233 (460)
||-++|..-...--..+ ...++++.+++++.
T Consensus 198 VInaTp~Gm~~~~~~pi~~~~l~~~~~v~Dlv 229 (283)
T 3jyo_A 198 VVNATPMGMPAHPGTAFDVSCLTKDHWVGDVV 229 (283)
T ss_dssp EEECSSTTSTTSCSCSSCGGGCCTTCEEEECC
T ss_pred EEECCCCCCCCCCCCCCCHHHhCCCCEEEEec
Confidence 99999953211100001 24566778888875
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0019 Score=61.37 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=64.1
Q ss_pred CeEEEECc-chHHHHHHHHHHhc-CCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCcEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANK-KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYC 203 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~-G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiV 203 (460)
|||+|+|+ |.||..++..+.+. + ++|. +++++. ++++++. ++|+|
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~--~elva~~d~~~-----------------------------dl~~~~~~~~Dvv 49 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADD--LTLSAELDAGD-----------------------------PLSLLTDGNTEVV 49 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTT--CEEEEEECTTC-----------------------------CTHHHHHTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CEEEEEEccCC-----------------------------CHHHHhccCCcEE
Confidence 68999997 99999999998865 5 7877 444431 3344343 78999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
|-++....+.+.+..... .+..+|..+.|+..+....+.+..++. . ...++..|++..
T Consensus 50 IDfT~p~a~~~~~~~a~~---~g~~~VigTTG~~~e~~~~l~~aa~~~-~----~~~vv~a~N~si 107 (245)
T 1p9l_A 50 IDFTHPDVVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAK-P----NTSVLIAPNFAI 107 (245)
T ss_dssp EECSCTTTHHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHTS-T----TCEEEECSCCCH
T ss_pred EEccChHHHHHHHHHHHH---cCCCEEEcCCCCCHHHHHHHHHHHHhC-C----CCCEEEECCccH
Confidence 967766666555544333 466677777788765332222222211 0 234667776543
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00065 Score=67.37 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=59.0
Q ss_pred CCCeEEEECcchHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---C
Q 012596 126 RTNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---A 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~-~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---a 200 (460)
+++||||||+|.||. ..+..|.+.. +.+|+ ++++++++ . ++...+|.++++++ .
T Consensus 24 ~~~rvgiiG~G~ig~~~~~~~l~~~~-~~~lvav~d~~~~~------~--------------g~~~~~~~~~ll~~~~~v 82 (330)
T 4ew6_A 24 SPINLAIVGVGKIVRDQHLPSIAKNA-NFKLVATASRHGTV------E--------------GVNSYTTIEAMLDAEPSI 82 (330)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHHCT-TEEEEEEECSSCCC------T--------------TSEEESSHHHHHHHCTTC
T ss_pred CCceEEEEecCHHHHHHHHHHHHhCC-CeEEEEEEeCChhh------c--------------CCCccCCHHHHHhCCCCC
Confidence 457999999999998 7888888753 26655 67777531 1 24466789888754 8
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|+|++|+|.....+++....+ .|..|+ +-|-+.
T Consensus 83 D~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKP~a 115 (330)
T 4ew6_A 83 DAVSLCMPPQYRYEAAYKALV---AGKHVF-LEKPPG 115 (330)
T ss_dssp CEEEECSCHHHHHHHHHHHHH---TTCEEE-ECSSSC
T ss_pred CEEEEeCCcHHHHHHHHHHHH---cCCcEE-EeCCCC
Confidence 999999997765555444332 354444 555443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0009 Score=62.30 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=54.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+.|+|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+...+. ... ..+.. ++..+++.++|+|
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~-~~Dl~--------~~~~~~~~~~D~v 88 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNEEQGPELRERGASDIV-VANLE--------EDFSHAFASIDAV 88 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHTTCSEEE-ECCTT--------SCCGGGGTTCSEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECChHHHHHHHhCCCceEE-EcccH--------HHHHHHHcCCCEE
Confidence 4689999997 999999999999999 999999999988877765443 111 01111 3556677899999
Q ss_pred EEccc
Q 012596 204 LHAMP 208 (460)
Q Consensus 204 ilaVp 208 (460)
|.+..
T Consensus 89 i~~ag 93 (236)
T 3e8x_A 89 VFAAG 93 (236)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98775
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0006 Score=67.09 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------ 197 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------ 197 (460)
+|+||||||+ |.||...+..|.+.+ .+++ ++|++++.. .+.+. + ....+.++.++.+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~--~~lvav~d~~~~~~-~~~~~------~------~~~~~~~~~~~ll~~~~~l 66 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVG--GVLVASLDPATNVG-LVDSF------F------PEAEFFTEPEAFEAYLEDL 66 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTT--CEEEEEECSSCCCG-GGGGT------C------TTCEEESCHHHHHHHHHHH
T ss_pred CceEEEEECCChHHHHHHHHHHHhCC--CEEEEEEcCCHHHH-HHHhh------C------CCCceeCCHHHHHHHhhhh
Confidence 3689999999 789999999999876 5654 788887542 11111 1 1345667888776
Q ss_pred ----CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 198 ----LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 198 ----~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
.+.|+|++|+|.....+++....+ .|..|+ +-|-+..
T Consensus 67 ~~~~~~vD~V~I~tP~~~H~~~~~~al~---aGkhVl-~EKPla~ 107 (312)
T 3o9z_A 67 RDRGEGVDYLSIASPNHLHYPQIRMALR---LGANAL-SEKPLVL 107 (312)
T ss_dssp HHTTCCCSEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSSCS
T ss_pred cccCCCCcEEEECCCchhhHHHHHHHHH---CCCeEE-EECCCCC
Confidence 578999999998776555444333 354443 5554443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0011 Score=63.29 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=51.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||||.|.|+|.+|+.++..|.+.| ++|++++|++...+.+...+..... .+ + ++++ +.++|+||.+
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~D--~-------~d~~--~~~~d~vi~~ 70 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQG--WRIIGTSRNPDQMEAIRASGAEPLL-WP--G-------EEPS--LDGVTHLLIS 70 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGT--CEEEEEESCGGGHHHHHHTTEEEEE-SS--S-------SCCC--CTTCCEEEEC
T ss_pred cCcEEEECCcHHHHHHHHHHHHCC--CEEEEEEcChhhhhhHhhCCCeEEE-ec--c-------cccc--cCCCCEEEEC
Confidence 589999999999999999999999 9999999998877766654321110 00 0 1222 6789999998
Q ss_pred cch
Q 012596 207 MPV 209 (460)
Q Consensus 207 Vp~ 209 (460)
...
T Consensus 71 a~~ 73 (286)
T 3ius_A 71 TAP 73 (286)
T ss_dssp CCC
T ss_pred CCc
Confidence 753
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00067 Score=66.93 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=61.4
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------ 197 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------ 197 (460)
+|+||||||+ |.||...+..|.+.+ .+++ ++|++++.. .+.+. + ....+.+|.++.+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~--~~lvav~d~~~~~~-~~~~~------~------~~~~~~~~~~~ll~~~~~l 66 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTG--NCLVSAYDINDSVG-IIDSI------S------PQSEFFTEFEFFLDHASNL 66 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTT--CEEEEEECSSCCCG-GGGGT------C------TTCEEESSHHHHHHHHHHH
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCC--CEEEEEEcCCHHHH-HHHhh------C------CCCcEECCHHHHHHhhhhh
Confidence 3689999999 789999999999876 6654 778887532 11111 0 1345667888765
Q ss_pred -----CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 198 -----LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 198 -----~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
.+.|+|++|+|.....++.....+ .|..| -+-|-+.
T Consensus 67 ~~~~~~~vD~V~I~tP~~~H~~~~~~al~---aGkhV-l~EKPla 107 (318)
T 3oa2_A 67 KRDSATALDYVSICSPNYLHYPHIAAGLR---LGCDV-ICEKPLV 107 (318)
T ss_dssp TTSTTTSCCEEEECSCGGGHHHHHHHHHH---TTCEE-EECSSCC
T ss_pred hhccCCCCcEEEECCCcHHHHHHHHHHHH---CCCeE-EEECCCc
Confidence 568999999998766555444333 34443 3455443
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0011 Score=63.26 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=60.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-------------------HHHHHHHhhc--CCCccCCCCCC--
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------------------AVCQSINEKH--CNCRYFPEQKL-- 183 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-------------------~~~~~l~~~g--~~~~~~~~~~l-- 183 (460)
.++|.|||+|.+|+.++..|++.|. .+++++|++. .+++.+.+.- .+ |+..+
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n----p~~~v~~ 105 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN----PHIAITP 105 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC----TTSEEEE
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC----CCcEEEE
Confidence 5799999999999999999999994 3899999987 5555443321 11 11100
Q ss_pred -CCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 184 -PENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 184 -~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+..+. ..+..+.++++|+||.++.....+..+...... .+..+|+.
T Consensus 106 ~~~~~~-~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~--~~~p~i~~ 152 (249)
T 1jw9_B 106 VNALLD-DAELAALIAEHDLVLDCTDNVAVRNQLNAGCFA--AKVPLVSG 152 (249)
T ss_dssp ECSCCC-HHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHH--HTCCEEEE
T ss_pred EeccCC-HhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEe
Confidence 00000 012344567889999998876655555444322 23445553
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00036 Score=64.39 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=50.9
Q ss_pred CeEEEEC-cchHHHHHHHHHH-hcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLG-GGSFGTAMAAHVA-NKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La-~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
++|.|.| .|.+|..++..|+ +.| ++|++++|+++ +++.+...+.+...+.. .+.-.++..++++++|+||
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----D~~d~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTD--MHITLYGRQLKTRIPPEIIDHERVTVIEG-----SFQNPGXLEQAVTNAEVVF 78 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCC--CEEEEEESSHHHHSCHHHHTSTTEEEEEC-----CTTCHHHHHHHHTTCSEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCC--ceEEEEecCccccchhhccCCCceEEEEC-----CCCCHHHHHHHHcCCCEEE
Confidence 3499999 5999999999999 888 99999999988 76666433222111100 0000123445678899999
Q ss_pred Eccch
Q 012596 205 HAMPV 209 (460)
Q Consensus 205 laVp~ 209 (460)
.+...
T Consensus 79 ~~ag~ 83 (221)
T 3r6d_A 79 VGAME 83 (221)
T ss_dssp ESCCC
T ss_pred EcCCC
Confidence 88764
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00081 Score=64.97 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=61.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+++.|||+|.+|.+++..|++.|. .+|++|+|+.++++++.+.-. .....+.. +.++|+||-+
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~-~~i~v~nRt~~ka~~la~~~~-------------~~~~~~~~--~~~~DivIna 182 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAALYG-------------YAYINSLE--NQQADILVNV 182 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHHHT-------------CEEESCCT--TCCCSEEEEC
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC-------------Cccchhhh--cccCCEEEEC
Confidence 4789999999999999999999982 379999999998888876410 01112222 4689999999
Q ss_pred cchhcHH----HHHHHh-hhcCCCCCeEEEecc
Q 012596 207 MPVQFSS----SFLEGI-SDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~----~vl~~i-~~~l~~~~iIV~~~~ 234 (460)
+|..-.. +.. .+ ...++++.+++++.-
T Consensus 183 Tp~gm~~~~~~~~~-~~~~~~l~~~~~v~DlvY 214 (271)
T 1npy_A 183 TSIGMKGGKEEMDL-AFPKAFIDNASVAFDVVA 214 (271)
T ss_dssp SSTTCTTSTTTTSC-SSCHHHHHHCSEEEECCC
T ss_pred CCCCccCccccCCC-CCCHHHcCCCCEEEEeec
Confidence 9964321 100 01 122334678888763
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.001 Score=67.01 Aligned_cols=89 Identities=10% Similarity=0.002 Sum_probs=61.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC-CCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL-GADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiV 203 (460)
..++|+|+|+|+||..+|..|.+.| .+|+++|++++.++++.+. +. ... +.++.+. +||++
T Consensus 172 ~GktV~V~G~G~VG~~~A~~L~~~G--akVvv~D~~~~~l~~~a~~~ga--------------~~v-~~~~ll~~~~DIv 234 (364)
T 1leh_A 172 EGLAVSVQGLGNVAKALCKKLNTEG--AKLVVTDVNKAAVSAAVAEEGA--------------DAV-APNAIYGVTCDIF 234 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHCC--------------EEC-CGGGTTTCCCSEE
T ss_pred CcCEEEEECchHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHcCC--------------EEE-ChHHHhccCCcEe
Confidence 3589999999999999999999999 8999999999888776654 21 122 3334444 89999
Q ss_pred EEccchhcH-HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+.|.-...+ .+.++. + ...+|+..+|+-
T Consensus 235 ip~a~~~~I~~~~~~~----l-g~~iV~e~An~p 263 (364)
T 1leh_A 235 APCALGAVLNDFTIPQ----L-KAKVIAGSADNQ 263 (364)
T ss_dssp EECSCSCCBSTTHHHH----C-CCSEECCSCSCC
T ss_pred eccchHHHhCHHHHHh----C-CCcEEEeCCCCC
Confidence 988644332 222233 3 234666666643
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00042 Score=71.85 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=53.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++++|.|+|+|.+|.+++..|++.| ++|++++|+.++++.+.+........ ...+.-.++..++++++|+||.
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G--~~V~v~~R~~~~a~~la~~~~~~~~~-----~~Dv~d~~~l~~~l~~~DvVIn 74 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSG--IKVTVACRTLESAKKLSAGVQHSTPI-----SLDVNDDAALDAEVAKHDLVIS 74 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTT--CEEEEEESSHHHHHHTTTTCTTEEEE-----ECCTTCHHHHHHHHTTSSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCc--CEEEEEECCHHHHHHHHHhcCCceEE-----EeecCCHHHHHHHHcCCcEEEE
Confidence 4679999999999999999999988 89999999998777664421000000 0000000133466789999999
Q ss_pred ccchhc
Q 012596 206 AMPVQF 211 (460)
Q Consensus 206 aVp~~~ 211 (460)
++|...
T Consensus 75 ~a~~~~ 80 (450)
T 1ff9_A 75 LIPYTF 80 (450)
T ss_dssp CCC--C
T ss_pred CCcccc
Confidence 999643
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0031 Score=59.05 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=55.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||+|.+|..-+..|.+.| .+|++++++.. .++.+.+.+. ..... .. -.. +-+.++|+||.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~~~l~~l~~~~~-i~~i~-----~~----~~~-~dL~~adLVIa 97 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVSAEINEWEAKGQ-LRVKR-----KK----VGE-EDLLNVFFIVV 97 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCCHHHHHHHHTTS-CEEEC-----SC----CCG-GGSSSCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCHHHHHHHHcCC-cEEEE-----CC----CCH-hHhCCCCEEEE
Confidence 589999999999999999999999 89999987643 4555555431 11100 00 022 33688999999
Q ss_pred ccchhcHHHHHHHh
Q 012596 206 AMPVQFSSSFLEGI 219 (460)
Q Consensus 206 aVp~~~~~~vl~~i 219 (460)
++....+...+...
T Consensus 98 AT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 98 ATNDQAVNKFVKQH 111 (223)
T ss_dssp CCCCTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 98877766554444
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0051 Score=56.32 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=50.0
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||.|.|+ |.+|..++..|++.| ++|++++|+++....+...+. .++.. ++ ++...+++.++|+||.+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~--~~~~~-D~------~d~~~~~~~~~d~vi~~ 69 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG--HEVLAVVRDPQKAADRLGATV--ATLVK-EP------LVLTEADLDSVDAVVDA 69 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHTCTTS--EEEEC-CG------GGCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEecccccccccCCCc--eEEec-cc------ccccHhhcccCCEEEEC
Confidence 68999997 999999999999999 999999999987765533222 11100 00 01111567889999988
Q ss_pred cch
Q 012596 207 MPV 209 (460)
Q Consensus 207 Vp~ 209 (460)
...
T Consensus 70 ag~ 72 (224)
T 3h2s_A 70 LSV 72 (224)
T ss_dssp CCC
T ss_pred Ccc
Confidence 743
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0014 Score=65.30 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=59.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCC-CCC--C-CCceEEeCCHHhhcCCCc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFP-EQK--L-PENVIATTDAKTALLGAD 201 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~~~-~~~--l-~~~i~a~~~~~ea~~~aD 201 (460)
+||||+|+|.||..+++.|.+.. +.+|+ +.+++.+....+... |.. .+.+ +.. + ...+.+..+.++..+++|
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p-~~elvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~~~~~~v~v~~~~e~l~~~vD 79 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQP-DMKLVGVAKTSPNYEAFIAHRRGIR-IYVPQQSIKKFEESGIPVAGTVEDLIKTSD 79 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSSCSHHHHHHHHTTCC-EECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred eEEEEEecCHHHHHHHHHHHcCC-CCEEEEEEcCChHHHHHHHHhcCcc-eecCcCHHHHhcccccccccCHhHhhcCCC
Confidence 68999999999999999998764 25655 556765544443332 321 1100 000 0 112233445666556899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+||.|+|.....+......+ .|..+|+.+
T Consensus 80 vV~~aTp~~~s~~~a~~~~~---aG~kvV~~s 108 (340)
T 1b7g_O 80 IVVDTTPNGVGAQYKPIYLQ---LQRNAIFQG 108 (340)
T ss_dssp EEEECCSTTHHHHHHHHHHH---TTCEEEECT
T ss_pred EEEECCCCchhHHHHHHHHH---cCCeEEEeC
Confidence 99999998766555433322 344455443
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.001 Score=64.67 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=62.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|+|+|.+|.+++..|.+.| . +|++++|+.++++++.+.- .....+++.+ + ++|+||
T Consensus 121 ~~k~vlvlGaGGaaraia~~L~~~G--~~~v~v~nRt~~ka~~La~~~-------------~~~~~~~l~~-l-~~DivI 183 (282)
T 3fbt_A 121 KNNICVVLGSGGAARAVLQYLKDNF--AKDIYVVTRNPEKTSEIYGEF-------------KVISYDELSN-L-KGDVII 183 (282)
T ss_dssp TTSEEEEECSSTTHHHHHHHHHHTT--CSEEEEEESCHHHHHHHCTTS-------------EEEEHHHHTT-C-CCSEEE
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHhc-------------CcccHHHHHh-c-cCCEEE
Confidence 3579999999999999999999998 6 8999999999888776521 0111223444 4 899999
Q ss_pred EccchhcHHHH--HHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSF--LEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~v--l~~i~~~l~~~~iIV~~~ 233 (460)
-++|..-.... ..--...++++.+++++.
T Consensus 184 naTp~Gm~~~~~~~pi~~~~l~~~~~v~Dlv 214 (282)
T 3fbt_A 184 NCTPKGMYPKEGESPVDKEVVAKFSSAVDLI 214 (282)
T ss_dssp ECSSTTSTTSTTCCSSCHHHHTTCSEEEESC
T ss_pred ECCccCccCCCccCCCCHHHcCCCCEEEEEe
Confidence 99986311100 000122345677888875
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=63.67 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=58.4
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.|. +|..+|..|.+.| ..|+++++.. .++++.++.||+||
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~g--AtVtv~~~~t----------------------------~~L~~~~~~ADIVI 198 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRN--YTVSVCHSKT----------------------------KDIGSMTRSSKIVV 198 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SCHHHHHHHSSEEE
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCC--CeEEEEeCCc----------------------------ccHHHhhccCCEEE
Confidence 468999999985 8999999999998 8999987632 26777889999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++...+ + -..++++|+++|++.
T Consensus 199 ~Avg~p~~---I--~~~~vk~GavVIDvg 222 (276)
T 3ngx_A 199 VAVGRPGF---L--NREMVTPGSVVIDVG 222 (276)
T ss_dssp ECSSCTTC---B--CGGGCCTTCEEEECC
T ss_pred ECCCCCcc---c--cHhhccCCcEEEEec
Confidence 99986432 1 135578999999975
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00031 Score=65.40 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=54.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVi 204 (460)
.++|+|||+|.+|..++..+.... +++++ ++|.++++.... ..+. .+...+++++.++ +.|.|+
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~---------i~gv----~V~~~~dl~ell~~~ID~Vi 145 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRP---------VRGG----VIEHVDLLPQRVPGRIEIAL 145 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCE---------ETTE----EEEEGGGHHHHSTTTCCEEE
T ss_pred CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhh---------hcCC----eeecHHhHHHHHHcCCCEEE
Confidence 478999999999999998633222 26655 778887533210 0011 2333567888765 589999
Q ss_pred EccchhcHHHHHHHhhh
Q 012596 205 HAMPVQFSSSFLEGISD 221 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~ 221 (460)
+|+|+....++.+.+.+
T Consensus 146 IA~Ps~~~~ei~~~l~~ 162 (211)
T 2dt5_A 146 LTVPREAAQKAADLLVA 162 (211)
T ss_dssp ECSCHHHHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHH
Confidence 99998776666666543
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0033 Score=62.53 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=65.2
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCe-----EEEEeCCH--HHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLK-----VYMLMRDP--AVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~-----V~v~~r~~--~~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (460)
.+||+|+| +|.+|..++..|+..|.-.+ +.++|+++ +.++.... .+... .+-.++..+++..++
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~------~~~~~~~~~~~~~~~ 76 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL------PLLKDVIATDKEEIA 76 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC------TTEEEEEEESCHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh------cccCCEEEcCCcHHH
Confidence 57999999 79999999999998773124 99999974 23322111 11110 111245566777778
Q ss_pred cCCCcEEEEcc--ch--------------hcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 197 LLGADYCLHAM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 197 ~~~aDiVilaV--p~--------------~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+++||+||++- |. ..+.++++.+.++-.++..++..+|-
T Consensus 77 ~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 77 FKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp TTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 99999999974 21 12345556666665444457777764
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0012 Score=65.65 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCH---HHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCC
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP---AVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~---~~~~~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~a 200 (460)
|+||+|+| .|.+|..+...|.+.. +.++..+..+. ..-+.+.+.... +.+. ..+.+.+ +.++..+++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p-~~el~~l~s~~~~~saGk~~~~~~p~---~~~~---~~~~v~~~~~~~~~~~~~ 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHP-HMNITALTVSAQSNDAGKLISDLHPQ---LKGI---VELPLQPMSDISEFSPGV 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCT-TEEEEEEEEETTCTTTTSBHHHHCGG---GTTT---CCCBEEEESSGGGTCTTC
T ss_pred ceEEEEECCCChHHHHHHHHHHhCC-CCcEEEEEecCchhhcCCchHHhCcc---ccCc---cceeEeccCCHHHHhcCC
Confidence 57999999 5999999999999853 26777654332 211222211100 1111 0112222 444544899
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|+||+|+|.....++...+.+ .|..+|+++.-+
T Consensus 77 Dvvf~a~p~~~s~~~~~~~~~---~g~~vIDlSa~f 109 (337)
T 3dr3_A 77 DVVFLATAHEVSHDLAPQFLE---AGCVVFDLSGAF 109 (337)
T ss_dssp SEEEECSCHHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred CEEEECCChHHHHHHHHHHHH---CCCEEEEcCCcc
Confidence 999999998877776666543 588999988644
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0058 Score=60.77 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=62.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEE-eC--CHHHHHHHHhhcCCCccCCCC------CCC---CceEEe--CC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MR--DPAVCQSINEKHCNCRYFPEQ------KLP---ENVIAT--TD 192 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~-~r--~~~~~~~l~~~g~~~~~~~~~------~l~---~~i~a~--~~ 192 (460)
++||||+|+|++|..+++.|.+.. +.+|+.+ ++ +.+....+.+.......+++. .+. ..+.+. .|
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~-~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d 81 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSG-KVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD 81 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC-SSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred ceEEEEEccCHHHHHHHHHHHcCC-CcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCC
Confidence 479999999999999999998764 3676644 43 565555554421100001110 111 122233 36
Q ss_pred HHhhc---CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 193 AKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 193 ~~ea~---~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+++.- .++|+||.|+|.....+... .+++.|...|.++.
T Consensus 82 ~~~l~~~~~~vDvV~eatg~~~~~e~a~---~~l~aGak~V~iSa 123 (335)
T 1u8f_O 82 PSKIKWGDAGAEYVVESTGVFTTMEKAG---AHLQGGAKRVIISA 123 (335)
T ss_dssp GGGCCTTTTTCCEEEECSSSCCSHHHHG---GGGGGTCSEEEESS
T ss_pred HHHCccccCCCCEEEECCCchhhHHHHH---HHHhCCCeEEEecc
Confidence 66641 47999999999877665543 34445666666664
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=69.92 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..||.|||+|.+|+.+|..|++.|. -.++++|.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGV-G~ItLvD~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCC
Confidence 5799999999999999999999996 4799999865
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0037 Score=61.49 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=62.5
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHH----HHhhcCCCccCCCCCCCCceEEeC-CHHhhcCC
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQS----INEKHCNCRYFPEQKLPENVIATT-DAKTALLG 199 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r--~~~~~~~----l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~ 199 (460)
|||+|+|+ |.+|..++..|+..|...++.++|+ ++++++. +.... ... + .+..+...+ +..+++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~---~~~-~--~~~~i~~~~d~l~~al~g 74 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL---AGT-R--SDANIYVESDENLRIIDE 74 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH---TTS-C--CCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH---Hhc-C--CCeEEEeCCcchHHHhCC
Confidence 69999999 9999999999998774346899999 7654332 22210 000 0 111233333 25677999
Q ss_pred CcEEEEccc--h---h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 200 ADYCLHAMP--V---Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 200 aDiVilaVp--~---~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+||++.- . . .+.++++.+.++- +..++..+|-+
T Consensus 75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv 125 (313)
T 1hye_A 75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPV 125 (313)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSH
T ss_pred CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcH
Confidence 999999752 1 1 1234445555554 56777777743
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0018 Score=63.96 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=51.3
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCCH--HHHHHHHh--hcCCCccCCCCCCCCceEEeCCH
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDP--AVCQSINE--KHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~~-----~~V~v~~r~~--~~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
|++.|||.|+|+ |.+|+.++..|.+.|.- ++|+++|+.+ ++.+.... .+.. ..+...+...++.
T Consensus 1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~------~~~~~di~~~~~~ 74 (327)
T 1y7t_A 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA------FPLLAGLEATDDP 74 (327)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT------CTTEEEEEEESCH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccc------ccccCCeEeccCh
Confidence 344689999997 99999999999988720 1899999874 22221110 1110 0111234555677
Q ss_pred HhhcCCCcEEEEcc
Q 012596 194 KTALLGADYCLHAM 207 (460)
Q Consensus 194 ~ea~~~aDiVilaV 207 (460)
.++++++|+||.+.
T Consensus 75 ~~a~~~~D~Vih~A 88 (327)
T 1y7t_A 75 KVAFKDADYALLVG 88 (327)
T ss_dssp HHHTTTCSEEEECC
T ss_pred HHHhCCCCEEEECC
Confidence 78889999999864
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00061 Score=67.56 Aligned_cols=93 Identities=9% Similarity=0.055 Sum_probs=59.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCH-HHHHHHHhh----cCCCccCCCCCCCCceEEeCCHHhhcC--
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDP-AVCQSINEK----HCNCRYFPEQKLPENVIATTDAKTALL-- 198 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~-~~~~~l~~~----g~~~~~~~~~~l~~~i~a~~~~~ea~~-- 198 (460)
++||||||+|.+|...+..| ..+ .+|+ ++|+++ +..+++.+. |. ...+.+|.+++++
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~--~~lvav~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ll~~~ 66 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEE--CSITGIAPGVPEEDLSKLEKAISEMNI------------KPKKYNNWWEMLEKE 66 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTT--EEEEEEECSSTTCCCHHHHHHHHTTTC------------CCEECSSHHHHHHHH
T ss_pred ceEEEEEccchhHHHHHHhc-CCC--cEEEEEecCCchhhHHHHHHHHHHcCC------------CCcccCCHHHHhcCC
Confidence 57999999999988777777 444 6766 678876 333333321 21 1245678988876
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
+.|+|++|+|.....+++....+ .|..|+ +-|-+..
T Consensus 67 ~vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~ 102 (337)
T 3ip3_A 67 KPDILVINTVFSLNGKILLEALE---RKIHAF-VEKPIAT 102 (337)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHH---TTCEEE-ECSSSCS
T ss_pred CCCEEEEeCCcchHHHHHHHHHH---CCCcEE-EeCCCCC
Confidence 48999999998765554443332 344433 5565544
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0015 Score=65.61 Aligned_cols=101 Identities=19% Similarity=0.346 Sum_probs=60.1
Q ss_pred cCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 125 ~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+++||+|+| .|.+|..+.+.|.+.. ..+++.+....+....+...+.. +.+... ..+.+. + ++...++|+|
T Consensus 14 M~~~kV~IiGAtG~iG~~llr~L~~~p-~~elvai~~~~~~g~~~~~~~~~---~~~~v~-~dl~~~-~-~~~~~~vDvV 86 (359)
T 1xyg_A 14 EKDIRIGLLGASGYTGAEIVRLLANHP-HFQVTLMTADRKAGQSMESVFPH---LRAQKL-PTLVSV-K-DADFSTVDAV 86 (359)
T ss_dssp -CCEEEEEECCSSHHHHHHHHHHHTCS-SEEEEEEBCSTTTTSCHHHHCGG---GTTSCC-CCCBCG-G-GCCGGGCSEE
T ss_pred ccCcEEEEECcCCHHHHHHHHHHHcCC-CcEEEEEeCchhcCCCHHHhCch---hcCccc-ccceec-c-hhHhcCCCEE
Confidence 3457999999 7999999999999865 24777665443221122211100 111000 011111 1 3344689999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|+|+|.....+..... +.|..+|+++.-.
T Consensus 87 f~atp~~~s~~~a~~~----~aG~~VId~sa~~ 115 (359)
T 1xyg_A 87 FCCLPHGTTQEIIKEL----PTALKIVDLSADF 115 (359)
T ss_dssp EECCCTTTHHHHHHTS----CTTCEEEECSSTT
T ss_pred EEcCCchhHHHHHHHH----hCCCEEEECCccc
Confidence 9999988776655443 4678899987533
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00084 Score=67.31 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=84.5
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhhcCCCccCCC-CCCCCceEEeCCHHhhcCC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKS----QLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~----~~~V~v~~r~~~~~~~l~~~g~~~~~~~~-~~l~~~i~a~~~~~ea~~~ 199 (460)
+||||+|+| .|.+|..+.+.|.+++. ..+++.+.+....-+.+...+.. +.+ ..+ .+.. .+.++ +.+
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~---l~~~~~~--~~~~-~~~~~-~~~ 80 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPH---LTPLAHR--VVEP-TEAAV-LGG 80 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTT---CGGGTTC--BCEE-CCHHH-HTT
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhccc---cccccee--eecc-CCHHH-hcC
Confidence 568999999 99999999999997640 24677665322100001110000 000 011 1111 24443 568
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECccc---HHHHhccCC
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF---ALELMNKLP 276 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~---a~e~~~g~~ 276 (460)
+|+||+|++.....+++..+ +.|..+|+++.-.-.+. .+..++..|.......++.=|.. ..++. ..
T Consensus 81 ~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~~R~~~----~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~-~~- 150 (352)
T 2nqt_A 81 HDAVFLALPHGHSAVLAQQL----SPETLIIDCGADFRLTD----AAVWERFYGSSHAGSWPYGLPELPGARDQLR-GT- 150 (352)
T ss_dssp CSEEEECCTTSCCHHHHHHS----CTTSEEEECSSTTTCSC----HHHHHHHHSSCCCCCCCBSCTTSTTHHHHHT-TC-
T ss_pred CCEEEECCCCcchHHHHHHH----hCCCEEEEECCCccCCc----chhhhhhccccCCCCeeEEecccccCHHHHh-cC-
Confidence 99999999988777766555 35788999886443221 02233434432111023344444 22332 22
Q ss_pred eEEE-EccCCHHHHHHHHHHHhcCCce
Q 012596 277 TAMV-VASKDRKLANAVQQLLASKHLR 302 (460)
Q Consensus 277 ~~i~-i~~~d~~~~~~l~~lL~~~g~~ 302 (460)
..+. .++......-.+.++++..+++
T Consensus 151 ~iIanPgC~tt~~~lal~PL~~~~~i~ 177 (352)
T 2nqt_A 151 RRIAVPGCYPTAALLALFPALAADLIE 177 (352)
T ss_dssp SEEECCCHHHHHHHHHHHHHHHTTCSC
T ss_pred CEEEcCCHHHHHHHHHHHHHHHcCCCc
Confidence 2111 1122345566788888876665
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0023 Score=62.41 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=58.5
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.|. +|..+|..|...| ..|+++++.. .++.+.++.||+||
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~hs~t----------------------------~~L~~~~~~ADIVI 213 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWNN--ATVTTCHSKT----------------------------AHLDEEVNKGDILV 213 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SSHHHHHTTCSEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC--CeEEEEECCc----------------------------ccHHHHhccCCEEE
Confidence 358999999996 7999999999988 8999987542 26777889999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++...+ + -.+++++|++||++.
T Consensus 214 ~Avg~p~~---I--~~~~vk~GavVIDVg 237 (301)
T 1a4i_A 214 VATGQPEM---V--KGEWIKPGAIVIDCG 237 (301)
T ss_dssp ECCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred ECCCCccc---C--CHHHcCCCcEEEEcc
Confidence 99987542 1 134567899999986
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0012 Score=56.03 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=63.4
Q ss_pred CCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
.++|+|||+ |.+|..+.+.|.+.| ++|+.++...+.+ .+..+..++.++-+ .|+
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g--~~V~pVnP~~~~i-------------------~G~~~y~sl~dlp~-vDl 61 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHG--HEFIPVGRKKGEV-------------------LGKTIINERPVIEG-VDT 61 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHT--CCEEEESSSCSEE-------------------TTEECBCSCCCCTT-CCE
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCC--CeEEEECCCCCcC-------------------CCeeccCChHHCCC-CCE
Confidence 578999998 579999999999999 8888887653211 02334446666445 899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+++++|...+.++++++.+. .... |-++.|+..+
T Consensus 62 avi~~p~~~v~~~v~e~~~~-g~k~--v~~~~G~~~~ 95 (122)
T 3ff4_A 62 VTLYINPQNQLSEYNYILSL-KPKR--VIFNPGTENE 95 (122)
T ss_dssp EEECSCHHHHGGGHHHHHHH-CCSE--EEECTTCCCH
T ss_pred EEEEeCHHHHHHHHHHHHhc-CCCE--EEECCCCChH
Confidence 99999999998888887654 2222 4478888643
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0018 Score=64.12 Aligned_cols=99 Identities=11% Similarity=0.143 Sum_probs=59.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc-----CCCCeEE-EEeCCHH---------HH-HHHHhhcCCCccCCCCCCCCceEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANK-----KSQLKVY-MLMRDPA---------VC-QSINEKHCNCRYFPEQKLPENVIA 189 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~-----G~~~~V~-v~~r~~~---------~~-~~l~~~g~~~~~~~~~~l~~~i~a 189 (460)
+++||+|||+|.||+.++..|.+. |.+.+|+ +++++.. .. +...+.+.- +. ..
T Consensus 3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~----~~------~~- 71 (325)
T 3ing_A 3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRI----SD------RA- 71 (325)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCS----CS------SB-
T ss_pred ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCC----Cc------cc-
Confidence 568999999999999999999874 3224555 5566542 11 112222210 00 00
Q ss_pred eCCHHhhcC--CCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 190 TTDAKTALL--GADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 190 ~~~~~ea~~--~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
. +..+.+. +.|+|+.|+|+... +...+.+...++.|.-+|+..++.
T Consensus 72 ~-d~~e~l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~ 120 (325)
T 3ing_A 72 F-SGPEDLMGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSG 120 (325)
T ss_dssp C-CSGGGGTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHH
T ss_pred C-CHHHHhcCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchh
Confidence 1 3344443 58999999997533 333444555566788888876644
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.002 Score=62.24 Aligned_cols=73 Identities=25% Similarity=0.342 Sum_probs=58.0
Q ss_pred CCCeEEEECcchH-HHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSF-GTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~m-G~~~A~~La~~--G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..+++.|||.|.+ |..+|..|.+. | ..|+++++.. .++.+.++.+|+
T Consensus 157 ~gk~vvVvG~s~iVG~p~A~lL~~~g~~--atVtv~h~~t----------------------------~~L~~~~~~ADI 206 (281)
T 2c2x_A 157 AGAHVVVIGRGVTVGRPLGLLLTRRSEN--ATVTLCHTGT----------------------------RDLPALTRQADI 206 (281)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHTSTTTC--CEEEEECTTC----------------------------SCHHHHHTTCSE
T ss_pred CCCEEEEECCCcHHHHHHHHHHhcCCCC--CEEEEEECch----------------------------hHHHHHHhhCCE
Confidence 3589999999985 99999999988 6 8999987543 267777899999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.+++...+ + -.+++++|+++|++.
T Consensus 207 VI~Avg~p~~---I--~~~~vk~GavVIDVg 232 (281)
T 2c2x_A 207 VVAAVGVAHL---L--TADMVRPGAAVIDVG 232 (281)
T ss_dssp EEECSCCTTC---B--CGGGSCTTCEEEECC
T ss_pred EEECCCCCcc---c--CHHHcCCCcEEEEcc
Confidence 9999986542 1 134568899999875
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0026 Score=61.61 Aligned_cols=73 Identities=25% Similarity=0.250 Sum_probs=58.0
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.|. +|.++|..|...| ..|+++.+.. .++++.++.+|+||
T Consensus 160 ~Gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~hs~t----------------------------~~L~~~~~~ADIVI 209 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKPVSQLLLNAK--ATVTTCHRFT----------------------------TDLKSHTTKADILI 209 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SSHHHHHTTCSEEE
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHhcccCCEEE
Confidence 358999999987 7999999999998 8999987542 25777889999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++...+ + -.+++++|+++|++.
T Consensus 210 ~Avg~p~~---I--~~~~vk~GavVIDvg 233 (285)
T 3l07_A 210 VAVGKPNF---I--TADMVKEGAVVIDVG 233 (285)
T ss_dssp ECCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred ECCCCCCC---C--CHHHcCCCcEEEEec
Confidence 99985432 1 135678899999874
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0018 Score=63.19 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=57.4
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH--hhcCCCcE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK--TALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~--ea~~~aDi 202 (460)
..+++.|||.|. +|.++|..|.+.| ..|+++++... +++ +.++.||+
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~~~~T~----------------------------~l~l~~~~~~ADI 213 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKEN--ATVTIVHSGTS----------------------------TEDMIDYLRTADI 213 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTSC----------------------------HHHHHHHHHTCSE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCCC----------------------------CchhhhhhccCCE
Confidence 468999999887 7999999999998 89999987431 344 66789999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.+++...+ + -..++++|+++|++.
T Consensus 214 VI~Avg~p~~---I--~~~~vk~GavVIDvg 239 (300)
T 4a26_A 214 VIAAMGQPGY---V--KGEWIKEGAAVVDVG 239 (300)
T ss_dssp EEECSCCTTC---B--CGGGSCTTCEEEECC
T ss_pred EEECCCCCCC---C--cHHhcCCCcEEEEEe
Confidence 9999996432 1 135578999999975
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0023 Score=61.90 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=58.3
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.|. +|.++|..|.+.| ..|+++++.. .++++.++.||+||
T Consensus 159 ~Gk~vvVvGrs~iVG~p~A~lL~~~g--AtVtv~h~~t----------------------------~~L~~~~~~ADIVI 208 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGRPMATMLLNAG--ATVSVCHIKT----------------------------KDLSLYTRQADLII 208 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SCHHHHHTTCSEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHHhhcCCEEE
Confidence 468999999987 6999999999998 8999987642 25777889999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++...+ + -.+++++|+++|++.
T Consensus 209 ~Avg~p~~---I--~~~~vk~GavVIDVg 232 (285)
T 3p2o_A 209 VAAGCVNL---L--RSDMVKEGVIVVDVG 232 (285)
T ss_dssp ECSSCTTC---B--CGGGSCTTEEEEECC
T ss_pred ECCCCCCc---C--CHHHcCCCeEEEEec
Confidence 99985432 1 135678899999874
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.002 Score=63.63 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=64.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC---HHHHHHHHhhcCCCccCCCCCCCCceEEe--CC---HHhh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD---PAVCQSINEKHCNCRYFPEQKLPENVIAT--TD---AKTA 196 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~---~~~~~~l~~~g~~~~~~~~~~l~~~i~a~--~~---~~ea 196 (460)
+.+++.|+|+|.+|.+++..|++.| . +|++++|+ .++++++.+.-.. . .+..+.+. ++ +.+.
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~G--a~~V~i~nR~~~~~~~a~~la~~~~~-~------~~~~~~~~~~~~~~~l~~~ 223 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDG--VKEISIFNRKDDFYANAEKTVEKINS-K------TDCKAQLFDIEDHEQLRKE 223 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECSSTTHHHHHHHHHHHHH-H------SSCEEEEEETTCHHHHHHH
T ss_pred cCCEEEEECCChHHHHHHHHHHHCC--CCEEEEEECCCchHHHHHHHHHHhhh-h------cCCceEEeccchHHHHHhh
Confidence 3579999999999999999999999 6 89999999 7777766543100 0 00012221 22 3455
Q ss_pred cCCCcEEEEccchhcHHH----HHHHhhhcCCCCCeEEEec
Q 012596 197 LLGADYCLHAMPVQFSSS----FLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 197 ~~~aDiVilaVp~~~~~~----vl~~i~~~l~~~~iIV~~~ 233 (460)
+.++|+||-++|..-... .+. ....++++.+++++.
T Consensus 224 l~~aDiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~Dlv 263 (315)
T 3tnl_A 224 IAESVIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDVV 263 (315)
T ss_dssp HHTCSEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEESC
T ss_pred hcCCCEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEec
Confidence 678999999999532111 010 123456777888875
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0018 Score=62.79 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=58.2
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.|. +|..+|..|...| ..|+++++.. .++.+.++.+|+||
T Consensus 158 ~gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~hs~t----------------------------~~L~~~~~~ADIVI 207 (288)
T 1b0a_A 158 FGLNAVVIGASNIVGRPMSMELLLAG--CTTTVTHRFT----------------------------KNLRHHVENADLLI 207 (288)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTT--CEEEEECSSC----------------------------SCHHHHHHHCSEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHHhccCCEEE
Confidence 358999999997 6999999999988 8999987543 26777788999999
Q ss_pred EccchhcHHHHHHHh-hhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGI-SDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i-~~~l~~~~iIV~~~ 233 (460)
.+++...+ + .+++++|++||++.
T Consensus 208 ~Avg~p~l------I~~~~vk~GavVIDVg 231 (288)
T 1b0a_A 208 VAVGKPGF------IPGDWIKEGAIVIDVG 231 (288)
T ss_dssp ECSCCTTC------BCTTTSCTTCEEEECC
T ss_pred ECCCCcCc------CCHHHcCCCcEEEEcc
Confidence 99996542 2 24568899999975
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00034 Score=69.61 Aligned_cols=89 Identities=25% Similarity=0.408 Sum_probs=57.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCC-------CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKS-------QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~-------~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
+++||+|||+|.||..++..|.+... +.+|+ +++|+.++. ++. +. ..+++|.++.+
T Consensus 2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-----~~~----------~~-~~~~~d~~~ll 65 (332)
T 2ejw_A 2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-----RAI----------PQ-ELLRAEPFDLL 65 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-----CSS----------CG-GGEESSCCCCT
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-----hcc----------Cc-ccccCCHHHHh
Confidence 45799999999999999999987520 13444 667775321 111 11 12566788877
Q ss_pred CCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEecc
Q 012596 198 LGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 198 ~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+.|+|+.|++... ..+.+. ..++.|.-+|+..+
T Consensus 66 -~iDvVve~t~~~~~a~~~~~---~AL~aGKhVVtaNk 99 (332)
T 2ejw_A 66 -EADLVVEAMGGVEAPLRLVL---PALEAGIPLITANK 99 (332)
T ss_dssp -TCSEEEECCCCSHHHHHHHH---HHHHTTCCEEECCH
T ss_pred -CCCEEEECCCCcHHHHHHHH---HHHHcCCeEEECCc
Confidence 9999999999653 233332 23345777776544
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0024 Score=63.86 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=59.5
Q ss_pred ccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHhhcCCCccCCCCCCC---CceEEeC-CHHhhc
Q 012596 124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLP---ENVIATT-DAKTAL 197 (460)
Q Consensus 124 ~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~-r~~~~~~~l~~~g~~~~~~~~~~l~---~~i~a~~-~~~ea~ 197 (460)
|++++||+|+| .|.+|..+.+.|.+.. ..+|+.+. .+....+.+.+.+.. +.+..++ ..+.+.+ ++++ +
T Consensus 1 m~~~~kV~IiGAtG~iG~~llr~L~~~p-~~elvai~~s~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~-~ 75 (350)
T 2ep5_A 1 MADKIKVSLLGSTGMVGQKMVKMLAKHP-YLELVKVSASPSKIGKKYKDAVKW---IEQGDIPEEVQDLPIVSTNYED-H 75 (350)
T ss_dssp -CCCEEEEEESCSSHHHHHHHHHHTTCS-SEEEEEEECCGGGTTSBHHHHCCC---CSSSSCCHHHHTCBEECSSGGG-G
T ss_pred CCCCcEEEEECcCCHHHHHHHHHHHhCC-CcEEEEEecChhhcCCCHHHhcCc---ccccccccCCceeEEeeCCHHH-h
Confidence 44578999999 7999999999998754 35777664 222211112111100 0000000 0112222 4444 4
Q ss_pred CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
.++|+||+|+|.....++.....+ .|..+|+++.
T Consensus 76 ~~vDvVf~atp~~~s~~~a~~~~~---aG~~VId~s~ 109 (350)
T 2ep5_A 76 KDVDVVLSALPNELAESIELELVK---NGKIVVSNAS 109 (350)
T ss_dssp TTCSEEEECCCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred cCCCEEEECCChHHHHHHHHHHHH---CCCEEEECCc
Confidence 789999999998776666555433 4777888774
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0017 Score=64.28 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=62.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil 205 (460)
.++|.|+|+|.+|..++..|.+.| + |++++++++.++ +.+.+....+ .+..- .+.+.++ ++++|.|++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g--~-v~vid~~~~~~~-~~~~~~~~i~-gd~~~------~~~L~~a~i~~a~~vi~ 183 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVRKK-VLRSGANFVH-GDPTR------VSDLEKANVRGARAVIV 183 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC--E-EEEESCGGGHHH-HHHTTCEEEE-SCTTS------HHHHHHTCSTTEEEEEE
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--c-EEEEeCChhhhh-HHhCCcEEEE-eCCCC------HHHHHhcChhhccEEEE
Confidence 468999999999999999999988 8 999999999888 7665432110 11000 0112333 678999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++++...-..-...+.+.++..++.-.
T Consensus 184 ~~~~d~~n~~~~~~ar~~~~~~~iiar~ 211 (336)
T 1lnq_A 184 DLESDSETIHCILGIRKIDESVRIIAEA 211 (336)
T ss_dssp CCSSHHHHHHHHHHHHTTCTTSEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHCCCCeEEEEE
Confidence 9997654333333344445554455433
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0015 Score=64.54 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=62.3
Q ss_pred CCCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--e--CCHHhhcCCC
Q 012596 126 RTNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--T--TDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~m-G~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a--~--~~~~ea~~~a 200 (460)
..+++.|||+|.| |..+|..|...| ..|++++|+..+... .. ..+... ......+ + .++.+.+.++
T Consensus 176 ~gk~vvVIG~G~iVG~~~A~~L~~~g--AtVtv~nR~~~~l~~---ra---~~la~~-~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRPLAALLANDG--ATVYSVDVNNIQKFT---RG---ESLKLN-KHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTS--CEEEEECSSEEEEEE---SC---CCSSCC-CCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCEEEEECCCcchHHHHHHHHHHCC--CEEEEEeCchHHHHh---HH---HHHhhh-cccccccccccHhHHHHHhccC
Confidence 3589999999976 999999999988 899999998421110 00 000000 0000001 2 5678888999
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+||.++..... ++ -.+++++|+++|++.-
T Consensus 247 DIVIsAtg~p~~--vI--~~e~vk~GavVIDVgi 276 (320)
T 1edz_A 247 DVVITGVPSENY--KF--PTEYIKEGAVCINFAC 276 (320)
T ss_dssp SEEEECCCCTTC--CB--CTTTSCTTEEEEECSS
T ss_pred CEEEECCCCCcc--ee--CHHHcCCCeEEEEcCC
Confidence 999999986431 00 0244678999999863
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0042 Score=61.39 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=49.1
Q ss_pred CCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcE
Q 012596 127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~v~~r~~--~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDi 202 (460)
++||.|||.|.+|.+ +|..|.+.| ++|+++|+.. ...+.+.+.|.. +..-.++++.. .++|+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G--~~V~~~D~~~~~~~~~~L~~~gi~------------v~~g~~~~~l~~~~~d~ 69 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAG--FEVSGCDAKMYPPMSTQLEALGID------------VYEGFDAAQLDEFKADV 69 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTT--CEEEEEESSCCTTHHHHHHHTTCE------------EEESCCGGGGGSCCCSE
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCC--CEEEEEcCCCCcHHHHHHHhCCCE------------EECCCCHHHcCCCCCCE
Confidence 689999999999995 999999999 9999999864 345667766542 12223444543 47999
Q ss_pred EEEc
Q 012596 203 CLHA 206 (460)
Q Consensus 203 Vila 206 (460)
||++
T Consensus 70 vV~S 73 (326)
T 3eag_A 70 YVIG 73 (326)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9985
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.003 Score=63.93 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=70.3
Q ss_pred CeEEEECcchHH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCC---CCCceEEeC----CHHhhcC
Q 012596 128 NKVVVLGGGSFG-TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQK---LPENVIATT----DAKTALL 198 (460)
Q Consensus 128 ~kI~IIGaG~mG-~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~~---l~~~i~a~~----~~~ea~~ 198 (460)
||+..+|+|++| +.++..|.++| ++|++.|+++..+++++++|. .....+... .-.++++.. +.-+++.
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g--~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~ 78 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAG--IQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIA 78 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTT--CEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHT
T ss_pred CcEEEECCCccchhhHHHHHHHcC--CeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHc
Confidence 789999999999 55566778888 999999999999999998753 111111110 012333321 2333567
Q ss_pred CCcEEEEccchhcHHHHHHHhhhc--------CCCCCeEEEeccCCccc
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDY--------VDPGLPFISLSKGLELN 239 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~--------l~~~~iIV~~~~Gi~~~ 239 (460)
++|+|.+++.......+...|.+. ..++-.|++|-|-....
T Consensus 79 ~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~pltilsCeN~~~ng 127 (382)
T 3h2z_A 79 QVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNIIACENMVRGT 127 (382)
T ss_dssp TCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEEEECCSSTTHH
T ss_pred CCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEEEECCCccchH
Confidence 999999999876555544333221 11344588998855443
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00032 Score=64.78 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=48.3
Q ss_pred ccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 124 ~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|++||||.|.| .|.+|..++..|.+.| ++|++++|+++..+.+. .+..++. ..+.-.++..++++++|+
T Consensus 1 M~~m~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~---~~~~~~~-----~Dl~d~~~~~~~~~~~d~ 70 (227)
T 3dhn_A 1 MEKVKKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPEKIKIEN---EHLKVKK-----ADVSSLDEVCEVCKGADA 70 (227)
T ss_dssp --CCCEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGGGCCCCC---TTEEEEC-----CCTTCHHHHHHHHTTCSE
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcccchhcc---CceEEEE-----ecCCCHHHHHHHhcCCCE
Confidence 44578999999 5999999999999999 99999999975432110 0001000 000001134456778999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||.+..
T Consensus 71 vi~~a~ 76 (227)
T 3dhn_A 71 VISAFN 76 (227)
T ss_dssp EEECCC
T ss_pred EEEeCc
Confidence 998764
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0089 Score=58.61 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCeEEEE-Cc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCc
Q 012596 126 RTNKVVVL-GG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (460)
Q Consensus 126 ~~~kI~II-Ga-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (460)
...+|+|| |+ |.+|...+..|.+.| ++ .++..++.+. |. . ..++.+..+++++.+ ..|
T Consensus 12 ~~~siaVV~Gasg~~G~~~~~~l~~~G--~~-~v~~VnP~~~------g~--~-------i~G~~vy~sl~el~~~~~vD 73 (305)
T 2fp4_A 12 DKNTKVICQGFTGKQGTFHSQQALEYG--TN-LVGGTTPGKG------GK--T-------HLGLPVFNTVKEAKEQTGAT 73 (305)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHT--CE-EEEEECTTCT------TC--E-------ETTEEEESSHHHHHHHHCCC
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHCC--Cc-EEEEeCCCcC------cc--e-------ECCeeeechHHHhhhcCCCC
Confidence 45678888 98 999999999999998 77 4455555210 10 0 013567778888877 899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
++++++|.....+++++..+. . =..+|.++.|+..+
T Consensus 74 ~avI~vP~~~~~~~~~e~i~~-G-i~~iv~~t~G~~~~ 109 (305)
T 2fp4_A 74 ASVIYVPPPFAAAAINEAIDA-E-VPLVVCITEGIPQQ 109 (305)
T ss_dssp EEEECCCHHHHHHHHHHHHHT-T-CSEEEECCCCCCHH
T ss_pred EEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCChH
Confidence 999999999988888776552 1 13557788888654
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0017 Score=61.81 Aligned_cols=83 Identities=8% Similarity=0.168 Sum_probs=60.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..|||+++|.|+||..+++. . + .++. +|+ +++ + + + ++.+++|+++++.++|+|+
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~--leLv~v~~---~k~------g-------e--l--gv~a~~d~d~lla~pD~VV 65 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-N--FEKIYAYD---RIS------K-------D--I--PGVVRLDEFQVPSDVSTVV 65 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-C--CSEEEEEC---SSC------C-------C--C--SSSEECSSCCCCTTCCEEE
T ss_pred ccceEEEECcCHHHHHHHhc--C-C--cEEEEEEe---ccc------c-------c--c--CceeeCCHHHHhhCCCEEE
Confidence 36999999999999999998 4 5 6664 666 211 1 1 1 2356778888888999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
-|-....+++.+ .+.|+.|.-+|.++-|.
T Consensus 66 e~A~~~av~e~~---~~iL~aG~dvv~~S~ga 94 (253)
T 1j5p_A 66 ECASPEAVKEYS---LQILKNPVNYIIISTSA 94 (253)
T ss_dssp ECSCHHHHHHHH---HHHTTSSSEEEECCGGG
T ss_pred ECCCHHHHHHHH---HHHHHCCCCEEEcChhh
Confidence 998777666543 44466788888888775
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0043 Score=56.51 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=49.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||.|.|+ |.+|..++..|++.| ++|++++|+++..+.+. .+. ..+.. + .++...+++.++|+||.+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~-~~~--~~~~~-D------~~d~~~~~~~~~d~vi~~ 68 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNAGKITQTH-KDI--NILQK-D------IFDLTLSDLSDQNVVVDA 68 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCSHHHHHHC-SSS--EEEEC-C------GGGCCHHHHTTCSEEEEC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCchhhhhcc-CCC--eEEec-c------ccChhhhhhcCCCEEEEC
Confidence 68999995 999999999999999 99999999987766543 221 11100 0 001111567889999988
Q ss_pred cch
Q 012596 207 MPV 209 (460)
Q Consensus 207 Vp~ 209 (460)
...
T Consensus 69 ag~ 71 (221)
T 3ew7_A 69 YGI 71 (221)
T ss_dssp CCS
T ss_pred CcC
Confidence 753
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0021 Score=59.77 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCeEEEECcchHHHHHHHHHH--hcCCCCeEE-EEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La--~~G~~~~V~-v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
..+|+|+|+|++|.+++..+. ..| +++. ++|.+++ +. |. ....+. .+.-.+++++.++ +.
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g--~~iVg~~D~dp~~ki------G~--~~i~Gv----pV~~~~dL~~~v~~~~I 149 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNK--MQISMAFDLDSNDLV------GK--TTEDGI----PVYGISTINDHLIDSDI 149 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSS--EEEEEEEECTTSTTT------TC--BCTTCC----BEEEGGGHHHHC-CCSC
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCC--eEEEEEEeCCchhcc------Cc--eeECCe----EEeCHHHHHHHHHHcCC
Confidence 468999999999999999843 334 6655 7788874 32 11 001111 2333467777776 58
Q ss_pred cEEEEccchhcHHHHHHHhhh
Q 012596 201 DYCLHAMPVQFSSSFLEGISD 221 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~ 221 (460)
|.+++|+|+....++.+.+.+
T Consensus 150 d~vIIAvPs~~aq~v~d~lv~ 170 (212)
T 3keo_A 150 ETAILTVPSTEAQEVADILVK 170 (212)
T ss_dssp CEEEECSCGGGHHHHHHHHHH
T ss_pred CEEEEecCchhHHHHHHHHHH
Confidence 999999999877777766544
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0036 Score=60.58 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=57.8
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.|. +|.++|..|...| ..|+++.+.. .++++.++.||+||
T Consensus 160 ~Gk~vvVvGrs~iVG~plA~lL~~~g--AtVtv~hs~T----------------------------~~L~~~~~~ADIVI 209 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGRPMALELLLGG--CTVTVTHRFT----------------------------RDLADHVSRADLVV 209 (286)
T ss_dssp TTCEEEEECTTSTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SCHHHHHHTCSEEE
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCC----------------------------cCHHHHhccCCEEE
Confidence 468999999876 8999999999988 8999986532 25677789999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++...+ + -.+++++|++||++.
T Consensus 210 ~Avg~p~~---I--~~~~vk~GavVIDvg 233 (286)
T 4a5o_A 210 VAAGKPGL---V--KGEWIKEGAIVIDVG 233 (286)
T ss_dssp ECCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred ECCCCCCC---C--CHHHcCCCeEEEEec
Confidence 99985432 1 135678999999975
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0029 Score=62.96 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=58.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHh-hcCCCc-cCCCC--CC-CCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINE-KHCNCR-YFPEQ--KL-PENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~-~g~~~~-~~~~~--~l-~~~i~a~~~~~ea~~~a 200 (460)
|+||||+|+|+||..+++.|.+.. +.+++ +.++++....+... .+.... .+++. .+ ...+.+..+.++.+.++
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~~-~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~v 79 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQD-DMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA 79 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSS-SEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred CeEEEEEeECHHHHHHHHHHHcCC-CcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCC
Confidence 469999999999999999998753 25654 45666544433332 211000 00000 00 01122223566666789
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+||.|+|.....+......+ .|..+|+.+
T Consensus 80 DvV~~atp~~~~~~~a~~~l~---aG~~VId~s 109 (337)
T 1cf2_P 80 DIVIDCTPEGIGAKNLKMYKE---KGIKAIFQG 109 (337)
T ss_dssp SEEEECCSTTHHHHHHHHHHH---HTCCEEECT
T ss_pred CEEEECCCchhhHHHHHHHHH---cCCEEEEec
Confidence 999999998766555544332 244555544
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0056 Score=61.29 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=59.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCc--cC--CCCCCCCceEEeCCHHhhcC-C
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCR--YF--PEQKLPENVIATTDAKTALL-G 199 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~--~~--~~~~l~~~i~a~~~~~ea~~-~ 199 (460)
++||+|+| .|.+|..+.+.|.+.. ..+|+.+.+++. ..+.+.+...... .+ .+..+ .+. ..++++..+ +
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p-~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 83 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHP-MFELTALAASERSAGKKYKDACYWFQDRDIPENIKDM--VVI-PTDPKHEEFED 83 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCS-SEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTC--BCE-ESCTTSGGGTT
T ss_pred cceEEEECcCCHHHHHHHHHHhcCC-CCEEEEEEcccccccccHHHhcccccccccccCceee--EEE-eCCHHHHhcCC
Confidence 47999999 7999999999998764 357776654321 1111211110000 00 00000 111 124555446 8
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+||+|+|.....+....+.+ .|..||+++.
T Consensus 84 ~DvV~~atp~~~~~~~a~~~~~---aG~~VId~s~ 115 (354)
T 1ys4_A 84 VDIVFSALPSDLAKKFEPEFAK---EGKLIFSNAS 115 (354)
T ss_dssp CCEEEECCCHHHHHHHHHHHHH---TTCEEEECCS
T ss_pred CCEEEECCCchHHHHHHHHHHH---CCCEEEECCc
Confidence 9999999998877666655543 5777898874
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0058 Score=59.43 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=49.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc--CCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANK--KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~--G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
+++||+|||+|.||...+..|.+. ..+.+++ +++++.. .+. + ++. ..|.+++++ +.
T Consensus 6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~~-----~--------g~~-~~~~~ell~~~~v 66 (294)
T 1lc0_A 6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GSL-----D--------EVR-QISLEDALRSQEI 66 (294)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CEE-----T--------TEE-BCCHHHHHHCSSE
T ss_pred CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HHH-----c--------CCC-CCCHHHHhcCCCC
Confidence 468999999999999999988652 1115555 6676531 000 0 122 358888775 68
Q ss_pred cEEEEccchhcHHHHHHH
Q 012596 201 DYCLHAMPVQFSSSFLEG 218 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~ 218 (460)
|+|++++|.....++...
T Consensus 67 D~V~i~tp~~~H~~~~~~ 84 (294)
T 1lc0_A 67 DVAYICSESSSHEDYIRQ 84 (294)
T ss_dssp EEEEECSCGGGHHHHHHH
T ss_pred CEEEEeCCcHhHHHHHHH
Confidence 999999998765554433
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0058 Score=61.63 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC----HHH----H----HHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD----PAV----C----QSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~----~~~----~----~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
..||.|+|+|.+|..+|+.|...|. .+|+++||+ .++ + +.+.+. .+. .....++.
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-~~~-----------~~~~~~L~ 258 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARI-TNP-----------ERLSGDLE 258 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCT-----------TCCCSCHH
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHh-hhc-----------cCchhhHH
Confidence 4799999999999999999999982 389999998 432 1 222221 110 01124789
Q ss_pred hhcCCCcEEEEccchh-cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 195 TALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 195 ea~~~aDiVilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++++++|++|-+.... ..+++++. ++++.+|+.++|-.
T Consensus 259 eav~~ADVlIG~Sap~l~t~emVk~----Ma~~pIIfalSNPt 297 (388)
T 1vl6_A 259 TALEGADFFIGVSRGNILKPEWIKK----MSRKPVIFALANPV 297 (388)
T ss_dssp HHHTTCSEEEECSCSSCSCHHHHTT----SCSSCEEEECCSSS
T ss_pred HHHccCCEEEEeCCCCccCHHHHHh----cCCCCEEEEcCCCC
Confidence 9999999998876532 24555544 45677999999843
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.005 Score=60.59 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=62.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC---HHHHHHHHhhcCCCccCCCCCCCCceEEe--CCH---Hhhc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD---PAVCQSINEKHCNCRYFPEQKLPENVIAT--TDA---KTAL 197 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~---~~~~~~l~~~g~~~~~~~~~~l~~~i~a~--~~~---~ea~ 197 (460)
.+++.|+|+|.+|.+++..|++.| . +|++++|+ .++++++.++-.. . .+..+.+. .+. .+.+
T Consensus 148 gk~~lVlGAGGaaraia~~L~~~G--~~~v~v~nRt~~~~~~a~~la~~~~~-~------~~~~v~~~~~~~l~~~~~~l 218 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAIEG--IKEIKLFNRKDDFFEKAVAFAKRVNE-N------TDCVVTVTDLADQHAFTEAL 218 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECSSTHHHHHHHHHHHHHH-H------SSCEEEEEETTCHHHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcC--CCEEEEEECCCchHHHHHHHHHHhhh-c------cCcceEEechHhhhhhHhhc
Confidence 579999999999999999999998 5 89999999 7777766542100 0 00012221 232 4456
Q ss_pred CCCcEEEEccchhcHHHHHHHh---hhcCCCCCeEEEec
Q 012596 198 LGADYCLHAMPVQFSSSFLEGI---SDYVDPGLPFISLS 233 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i---~~~l~~~~iIV~~~ 233 (460)
.++|+||-++|..-...--..+ ...++++.+++++.
T Consensus 219 ~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 257 (312)
T 3t4e_A 219 ASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV 257 (312)
T ss_dssp HHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECC
T ss_pred cCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEec
Confidence 7899999999964210000011 13456677777765
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00077 Score=62.99 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=48.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+||+|.|.| .|.+|..++..|++.| .++|++++|+++..+.+...+ ...+ ...+.-.++.+++++++|+||
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G-~~~V~~~~R~~~~~~~~~~~~--~~~~-----~~Dl~d~~~~~~~~~~~D~vv 93 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQ-TIKQTLFARQPAKIHKPYPTN--SQII-----MGDVLNHAALKQAMQGQDIVY 93 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT-TEEEEEEESSGGGSCSSCCTT--EEEE-----ECCTTCHHHHHHHHTTCSEEE
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCC-CceEEEEEcChhhhcccccCC--cEEE-----EecCCCHHHHHHHhcCCCEEE
Confidence 357899999 6999999999999987 258999999986432211100 0000 000000113345677899999
Q ss_pred Eccchh
Q 012596 205 HAMPVQ 210 (460)
Q Consensus 205 laVp~~ 210 (460)
.+....
T Consensus 94 ~~a~~~ 99 (236)
T 3qvo_A 94 ANLTGE 99 (236)
T ss_dssp EECCST
T ss_pred EcCCCC
Confidence 877643
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0037 Score=60.42 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=50.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD-----PAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~-----~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
.+|+|.|.|+ |.+|..++..|.+.| ++|++++|+ +++.+.+... ..+...... + +.-.+++.++++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-D----~~d~~~l~~~~~ 75 (313)
T 1qyd_A 3 KKSRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA-S----LDDHQRLVDALK 75 (313)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECC-C----SSCHHHHHHHHT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhCC--CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeC-C----CCCHHHHHHHHh
Confidence 3689999995 999999999999999 999999998 4444433221 111111100 0 110123556778
Q ss_pred CCcEEEEccch
Q 012596 199 GADYCLHAMPV 209 (460)
Q Consensus 199 ~aDiVilaVp~ 209 (460)
++|+||.+...
T Consensus 76 ~~d~vi~~a~~ 86 (313)
T 1qyd_A 76 QVDVVISALAG 86 (313)
T ss_dssp TCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 99999998763
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0061 Score=60.41 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=59.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhc-------CCCCeEE-EEeCCHHHH------HHHHhhcCCCccCCCCCCCCceEEe--
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK-------KSQLKVY-MLMRDPAVC------QSINEKHCNCRYFPEQKLPENVIAT-- 190 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~-------G~~~~V~-v~~r~~~~~------~~l~~~g~~~~~~~~~~l~~~i~a~-- 190 (460)
|+||+|||+|.||..++..|.+. |.+.+|+ +++++.... +.+.+.... ...+
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~------------~~~~~~ 69 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET------------GMLRDD 69 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHH------------SSCSBC
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccC------------ccccCC
Confidence 57999999999999999999875 1235655 566664321 111111000 0112
Q ss_pred CCHHhhcC--CCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccC
Q 012596 191 TDAKTALL--GADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 191 ~~~~ea~~--~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
.|.++.++ +.|+|+.|+|+... .+..+.+...++.|..+|+..++
T Consensus 70 ~d~~~ll~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKk 117 (327)
T 3do5_A 70 AKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKG 117 (327)
T ss_dssp CCHHHHHHHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSH
T ss_pred CCHHHHhcCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCch
Confidence 26777664 68999999997642 11334455566678888876553
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0028 Score=63.21 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=55.4
Q ss_pred ccCCCeEEEEC-cchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCC
Q 012596 124 LERTNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGA 200 (460)
Q Consensus 124 ~~~~~kI~IIG-aG~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~a 200 (460)
|+++|||+|+| .|.+|..+.+.|.++++ ..+++.+..... .|.... +.+. .+.+. .++++ +.++
T Consensus 3 M~m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~-------~g~~~~-~~g~----~i~~~~~~~~~-~~~~ 69 (340)
T 2hjs_A 3 MSQPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES-------AGQRMG-FAES----SLRVGDVDSFD-FSSV 69 (340)
T ss_dssp --CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT-------TTCEEE-ETTE----EEECEEGGGCC-GGGC
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCC-------CCCccc-cCCc----ceEEecCCHHH-hcCC
Confidence 33357999999 79999999999986652 235565542210 111000 1111 11111 12322 5689
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+||+|+|.....+......+ .|..+|+++.
T Consensus 70 DvV~~a~g~~~s~~~a~~~~~---aG~kvId~Sa 100 (340)
T 2hjs_A 70 GLAFFAAAAEVSRAHAERARA---AGCSVIDLSG 100 (340)
T ss_dssp SEEEECSCHHHHHHHHHHHHH---TTCEEEETTC
T ss_pred CEEEEcCCcHHHHHHHHHHHH---CCCEEEEeCC
Confidence 999999998776665555433 4677787764
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0047 Score=65.66 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
..||.|||+|.+|+.+|..|++.|. -+++++|.+
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~aGV-G~ItLvD~D 360 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNG 360 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC-CEEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 5799999999999999999999996 479999866
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0081 Score=59.58 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=58.2
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhc------CCCCeEE-EEeCCHHHHHH------HHhhcCCCccCCCCCCCCce-EE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANK------KSQLKVY-MLMRDPAVCQS------INEKHCNCRYFPEQKLPENV-IA 189 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~------G~~~~V~-v~~r~~~~~~~------l~~~g~~~~~~~~~~l~~~i-~a 189 (460)
||+++||+|||+|.||..++..|.+. |.+.+|+ +++++.++.+. +.+.... ..+ .+
T Consensus 3 mM~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 72 (331)
T 3c8m_A 3 AMKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEK----------GSLDSL 72 (331)
T ss_dssp -CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHT----------TCGGGC
T ss_pred CCcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhcc----------CCcccc
Confidence 44568999999999999999999764 2114554 66777643221 1110000 001 12
Q ss_pred eC---CHHhhc-CCCcEEEEccchh----cHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 190 TT---DAKTAL-LGADYCLHAMPVQ----FSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 190 ~~---~~~ea~-~~aDiVilaVp~~----~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
++ |+++++ .+.|+|+.|+|.. ...+. +...+..|.-||+..+.
T Consensus 73 ~~~~~d~~~ll~~~iDvVv~~t~~~~~~~~~~~~---~~~AL~aGkhVvtanK~ 123 (331)
T 3c8m_A 73 EYESISASEALARDFDIVVDATPASADGKKELAF---YKETFENGKDVVTANKS 123 (331)
T ss_dssp CSEECCHHHHHHSSCSEEEECSCCCSSSHHHHHH---HHHHHHTTCEEEECCCH
T ss_pred cCCCCCHHHHhCCCCCEEEECCCCCCccchHHHH---HHHHHHCCCeEEecCch
Confidence 23 677765 4689999999985 22222 33344567777776553
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0012 Score=59.60 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=32.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
.|+|.|.|+ |.+|..++..|.+.| ++|++++|+++.
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~~~ 39 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSR 39 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGG
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeChhh
Confidence 379999998 999999999999999 999999998753
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.003 Score=60.86 Aligned_cols=86 Identities=12% Similarity=0.234 Sum_probs=54.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCC------HHHHHHHH---hhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD------PAVCQSIN---EKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~------~~~~~~l~---~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
.+|+|.|.|+ |.+|..++..|.+.| ++|++++|+ +++.+.+. ..+. ..... ++ .-.+++.+
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v--~~v~~-D~----~d~~~l~~ 73 (308)
T 1qyc_A 3 SRSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRESTASSNSEKAQLLESFKASGA--NIVHG-SI----DDHASLVE 73 (308)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCCTTTTHHHHHHHHHHHTTTC--EEECC-CT----TCHHHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhCC--CCEEEEECCcccccCHHHHHHHHHHHhCCC--EEEEe-cc----CCHHHHHH
Confidence 3689999996 999999999999999 899999997 33333232 2222 11100 01 00123456
Q ss_pred hcCCCcEEEEccchh---cHHHHHHHhh
Q 012596 196 ALLGADYCLHAMPVQ---FSSSFLEGIS 220 (460)
Q Consensus 196 a~~~aDiVilaVp~~---~~~~vl~~i~ 220 (460)
+++++|+||.+.... ....+++...
T Consensus 74 ~~~~~d~vi~~a~~~~~~~~~~l~~aa~ 101 (308)
T 1qyc_A 74 AVKNVDVVISTVGSLQIESQVNIIKAIK 101 (308)
T ss_dssp HHHTCSEEEECCCGGGSGGGHHHHHHHH
T ss_pred HHcCCCEEEECCcchhhhhHHHHHHHHH
Confidence 677899999988743 2344554443
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0028 Score=60.37 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|.+|+.++..|++.|. ..++++|.+.
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gv-g~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGV-GTLVLADDDD 62 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTC-SEEEEECCCB
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence 5799999999999999999999995 3789998763
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.016 Score=57.72 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=58.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCc-cC--C-CC-CC-CCceEEeCCHHhhcC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCR-YF--P-EQ-KL-PENVIATTDAKTALL 198 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~-~~--~-~~-~l-~~~i~a~~~~~ea~~ 198 (460)
|+||||+|+|++|..+++.|.+.. +.+|+ +.+++++....+.+. |.... .+ + .. .+ ...+.+..+..+...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~-~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~ 80 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQD-DMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE 80 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSS-SEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCC-CceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc
Confidence 469999999999999999998763 25655 445555544444332 11100 00 0 00 00 011222234555557
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEE
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~ 231 (460)
++|+|+.|++.....+..+ ..+++.|..+|+
T Consensus 81 ~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~ 111 (343)
T 2yyy_A 81 DADIVVDGAPKKIGKQNLE--NIYKPHKVKAIL 111 (343)
T ss_dssp GCSEEEECCCTTHHHHHHH--HTTTTTTCEEEE
T ss_pred CCCEEEECCCccccHHHHH--HHHHHCCCEEEE
Confidence 8999999999876554443 345566766554
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.28 E-value=0.014 Score=58.04 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=57.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEe-C--CHHHHHHHHhhc-CCCccC-------CCCCCC---CceEEe--
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM-R--DPAVCQSINEKH-CNCRYF-------PEQKLP---ENVIAT-- 190 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~-r--~~~~~~~l~~~g-~~~~~~-------~~~~l~---~~i~a~-- 190 (460)
++||||+|+|++|..+.+.|.+.. +.+|+.++ + +.+....+.+.. ....+. .+..+. ..+.+.
T Consensus 3 ~ikVgI~G~GrIGr~l~R~l~~~p-~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~ 81 (337)
T 3e5r_O 3 KIKIGINGFGRIGRLVARVALQSE-DVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI 81 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCS-SEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECC
T ss_pred ceEEEEECcCHHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEec
Confidence 369999999999999999998763 25666444 2 344444443211 000000 011110 122323
Q ss_pred CCHHhhc---CCCcEEEEccchhcHHHHHHHhhhcCCCCC--eEEEec
Q 012596 191 TDAKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS 233 (460)
Q Consensus 191 ~~~~ea~---~~aDiVilaVp~~~~~~vl~~i~~~l~~~~--iIV~~~ 233 (460)
.|+++.- .++|+||.|+|.....+...... +.|. +||+..
T Consensus 82 ~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l---~aGak~VVIs~p 126 (337)
T 3e5r_O 82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHL---KGGAKKVVISAP 126 (337)
T ss_dssp SCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEESSC
T ss_pred CChHHccccccCCCEEEECCCchhhHHHHHHHH---HcCCCEEEEecC
Confidence 2666531 47999999999876655544332 2344 666553
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0033 Score=63.11 Aligned_cols=105 Identities=24% Similarity=0.280 Sum_probs=59.9
Q ss_pred ccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-C-ccCC-CCCCCCceEEeCCHHhhcCC
Q 012596 124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-C-RYFP-EQKLPENVIATTDAKTALLG 199 (460)
Q Consensus 124 ~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~-~-~~~~-~~~l~~~i~a~~~~~ea~~~ 199 (460)
|++++||+||| .|..|.-+.+.|.+.. ..++..+......-+.+.+.... . ..++ +.. ...+.. .+.++ +.+
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP-~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~-~~~v~~-~~~~~-~~~ 79 (359)
T 4dpl_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHP-YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA-DMEIKP-TDPKL-MDD 79 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCS-SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHH-TCBCEE-CCGGG-CTT
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC-CceEEEEECchhcCCChhHhcccccccccccccc-cceEEe-CCHHH-hcC
Confidence 44567999999 6999999999888653 24666554332211112211000 0 0000 000 001121 23333 579
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+|+||+|+|.....++...+.+ .|..+|+++.-
T Consensus 80 vDvvf~a~p~~~s~~~a~~~~~---~G~~vIDlSa~ 112 (359)
T 4dpl_A 80 VDIIFSPLPQGAAGPVEEQFAK---EGFPVISNSPD 112 (359)
T ss_dssp CCEEEECCCTTTHHHHHHHHHH---TTCEEEECSST
T ss_pred CCEEEECCChHHHHHHHHHHHH---CCCEEEEcCCC
Confidence 9999999998887776665543 58899998853
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0033 Score=63.11 Aligned_cols=105 Identities=24% Similarity=0.280 Sum_probs=59.9
Q ss_pred ccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-C-ccCC-CCCCCCceEEeCCHHhhcCC
Q 012596 124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-C-RYFP-EQKLPENVIATTDAKTALLG 199 (460)
Q Consensus 124 ~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~-~-~~~~-~~~l~~~i~a~~~~~ea~~~ 199 (460)
|++++||+||| .|..|.-+.+.|.+.. ..++..+......-+.+.+.... . ..++ +.. ...+.. .+.++ +.+
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP-~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~-~~~v~~-~~~~~-~~~ 79 (359)
T 4dpk_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHP-YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA-DMEIKP-TDPKL-MDD 79 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCS-SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHH-TCBCEE-CCGGG-CTT
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC-CceEEEEECchhcCCChhHhcccccccccccccc-cceEEe-CCHHH-hcC
Confidence 44567999999 6999999999888653 24666554332211112211000 0 0000 000 001121 23333 579
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+|+||+|+|.....++...+.+ .|..+|+++.-
T Consensus 80 vDvvf~a~p~~~s~~~a~~~~~---~G~~vIDlSa~ 112 (359)
T 4dpk_A 80 VDIIFSPLPQGAAGPVEEQFAK---EGFPVISNSPD 112 (359)
T ss_dssp CCEEEECCCTTTHHHHHHHHHH---TTCEEEECSST
T ss_pred CCEEEECCChHHHHHHHHHHHH---CCCEEEEcCCC
Confidence 9999999998887776665543 58899998853
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0076 Score=58.33 Aligned_cols=101 Identities=16% Similarity=0.289 Sum_probs=64.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.+++.|+|+|.+|.+++..|++.| +|++++|+.++++.+.+.-.. .. .......+.+. +..+.+.++|+||.
T Consensus 127 ~~k~vlV~GaGgiG~aia~~L~~~G---~V~v~~r~~~~~~~l~~~~~~-~~--~~~~~~~~d~~-~~~~~~~~~DilVn 199 (287)
T 1nvt_A 127 KDKNIVIYGAGGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAE-KL--NKKFGEEVKFS-GLDVDLDGVDIIIN 199 (287)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHH-HH--TCCHHHHEEEE-CTTCCCTTCCEEEE
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHhh-hc--ccccceeEEEe-eHHHhhCCCCEEEE
Confidence 3578999999999999999999886 899999998877766543100 00 00000012222 23455678999999
Q ss_pred ccchhcHHH---H-HHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSS---F-LEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~---v-l~~i~~~l~~~~iIV~~~~ 234 (460)
+++...... . + .-...++++.+++++.-
T Consensus 200 ~ag~~~~~~~~~~~~-~~~~~l~~~~~v~Dv~y 231 (287)
T 1nvt_A 200 ATPIGMYPNIDVEPI-VKAEKLREDMVVMDLIY 231 (287)
T ss_dssp CSCTTCTTCCSSCCS-SCSTTCCSSSEEEECCC
T ss_pred CCCCCCCCCCCCCCC-CCHHHcCCCCEEEEeee
Confidence 998543210 0 1 01234667888888763
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0044 Score=61.66 Aligned_cols=93 Identities=14% Similarity=0.247 Sum_probs=57.4
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDi 202 (460)
+++||+|+| .|.+|..+.+.|.++++ ..+++.+..... .|.... +.+ ..+.+.+ ++ +...++|+
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~-------~G~~~~-~~~----~~i~~~~~~~-~~~~~vDv 68 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERS-------EGKTYR-FNG----KTVRVQNVEE-FDWSQVHI 68 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTT-------TTCEEE-ETT----EEEEEEEGGG-CCGGGCSE
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCC-------CCCcee-ecC----ceeEEecCCh-HHhcCCCE
Confidence 468999999 99999999999988731 256666653211 111100 111 1122221 22 23468999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
||+|+|.....+...... +.|..+|+++.
T Consensus 69 Vf~a~g~~~s~~~a~~~~---~~G~~vId~s~ 97 (336)
T 2r00_A 69 ALFSAGGELSAKWAPIAA---EAGVVVIDNTS 97 (336)
T ss_dssp EEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred EEECCCchHHHHHHHHHH---HcCCEEEEcCC
Confidence 999999877666555443 35778888764
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0083 Score=62.12 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCC-----HHhhcC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD-----AKTALL 198 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~---~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~-----~~ea~~ 198 (460)
.+||.|||+|.||+.++..|+++. +. +|++.|.+....+.....|.... .+.++.+ +..+++
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~-dv~~~~I~vaD~~~~~~~~~~~~g~~~~---------~~~Vdadnv~~~l~aLl~ 82 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKF-DIKPSQVTIIAAEGTKVDVAQQYGVSFK---------LQQITPQNYLEVIGSTLE 82 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHB-CCCGGGEEEEESSCCSCCHHHHHTCEEE---------ECCCCTTTHHHHTGGGCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCC-CCceeEEEEeccchhhhhHHhhcCCcee---------EEeccchhHHHHHHHHhc
Confidence 579999999999999999999875 23 68888876543222222232110 0112122 234556
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+.|+||-+.+......+++...+ .|.-.+++.+
T Consensus 83 ~~DvVIN~s~~~~~l~Im~acle---aGv~YlDTa~ 115 (480)
T 2ph5_A 83 ENDFLIDVSIGISSLALIILCNQ---KGALYINAAT 115 (480)
T ss_dssp TTCEEEECCSSSCHHHHHHHHHH---HTCEEEESSC
T ss_pred CCCEEEECCccccCHHHHHHHHH---cCCCEEECCC
Confidence 67999998887776666655443 3677888775
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.012 Score=60.64 Aligned_cols=66 Identities=26% Similarity=0.227 Sum_probs=48.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC-Cc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG-AD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~----~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~-aD 201 (460)
.+||.|||+|..|.+.|..|.+.| ++|+++|++. ...+.+.+.|.. +..-.++++.+.+ +|
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~~~~~~~~L~~~gi~------------~~~g~~~~~~~~~~~d 74 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFDENPTAQSLLEEGIK------------VVCGSHPLELLDEDFC 74 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGGGCHHHHHHHHTTCE------------EEESCCCGGGGGSCEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCcccCChHHHHHHhCCCE------------EEECCChHHhhcCCCC
Confidence 579999999999999999999999 9999999854 245666666542 1111233344455 89
Q ss_pred EEEEc
Q 012596 202 YCLHA 206 (460)
Q Consensus 202 iVila 206 (460)
+||++
T Consensus 75 ~vv~s 79 (451)
T 3lk7_A 75 YMIKN 79 (451)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99986
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0093 Score=60.28 Aligned_cols=102 Identities=17% Similarity=0.290 Sum_probs=59.0
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCC-----CceEEeCCHHhhcC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLP-----ENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~-~r~~~~~~~l~~~g~~~~~~~~~~l~-----~~i~a~~~~~ea~~ 198 (460)
+++||+||| .|..|.-|.+.|.+.. ..++..+ ...+..-+.+.+... .+.+..+| ..+... +..+.+.
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~hp-~~el~~l~aS~~saGk~~~~~~~---~~~~~~~p~~~~~~~v~~~-~~~~~~~ 92 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKHP-EFEIHALGASSRSAGKKYKDAAS---WKQTETLPETEQDIVVQEC-KPEGNFL 92 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCS-SEEEEEEEECTTTTTSBHHHHCC---CCCSSCCCHHHHTCBCEES-SSCTTGG
T ss_pred CccEEEEECCCChHHHHHHHHHHcCC-CceEEEeeccccccCCCHHHhcc---cccccccccccccceEEeC-chhhhcc
Confidence 457999999 6999999999998753 2466533 322211111111100 00000011 012222 2221357
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
++|+||+|+|.....++...+.+ .|..+|+++.-
T Consensus 93 ~~Dvvf~alp~~~s~~~~~~~~~---~G~~VIDlSa~ 126 (381)
T 3hsk_A 93 ECDVVFSGLDADVAGDIEKSFVE---AGLAVVSNAKN 126 (381)
T ss_dssp GCSEEEECCCHHHHHHHHHHHHH---TTCEEEECCST
T ss_pred cCCEEEECCChhHHHHHHHHHHh---CCCEEEEcCCc
Confidence 89999999998887777666543 57889998753
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0077 Score=60.57 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=58.3
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCcEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiV 203 (460)
++||+||| .|..|.-+.+.|.+.++ ..++.++.... ..|.... +.+. .+.+. .+. +.+.++|+|
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~-------saG~~~~-~~~~----~~~~~~~~~-~~~~~~Dvv 68 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASAR-------SAGKSLK-FKDQ----DITIEETTE-TAFEGVDIA 68 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTT-------TTTCEEE-ETTE----EEEEEECCT-TTTTTCSEE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccc-------cCCCcce-ecCC----CceEeeCCH-HHhcCCCEE
Confidence 47999999 89999999999998752 12445554322 1122111 1111 12222 122 335789999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
|+|+|.....+....+.+ .|..+|+++.-
T Consensus 69 f~a~~~~~s~~~a~~~~~---~G~~vIDlSa~ 97 (366)
T 3pwk_A 69 LFSAGSSTSAKYAPYAVK---AGVVVVDNTSY 97 (366)
T ss_dssp EECSCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred EECCChHhHHHHHHHHHH---CCCEEEEcCCc
Confidence 999998777766655543 57889998854
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.026 Score=54.86 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=50.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----cCCCccC--CCCCCCCceEEeCCHHhhc
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYF--PEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-----g~~~~~~--~~~~l~~~i~a~~~~~ea~ 197 (460)
+.|+|.|.|+ |.+|+.++..|++.| ++|++++|+.+..+.+.+. +.+..++ .+..- ..+..+++
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d------~~~~~~~~ 81 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHG--YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK------QGAYDEVI 81 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS------TTTTTTTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC------hHHHHHHH
Confidence 4589999997 999999999999999 9999999998765544331 1111111 11110 12344556
Q ss_pred CCCcEEEEccc
Q 012596 198 LGADYCLHAMP 208 (460)
Q Consensus 198 ~~aDiVilaVp 208 (460)
+++|+||.+..
T Consensus 82 ~~~d~vih~A~ 92 (342)
T 1y1p_A 82 KGAAGVAHIAS 92 (342)
T ss_dssp TTCSEEEECCC
T ss_pred cCCCEEEEeCC
Confidence 68999998763
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0056 Score=58.53 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=49.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||.|.|+ |.+|..++..|.+. | ++|++.+|+++....+...+. .... ..+.-.++..++++++|+||.
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g--~~V~~~~R~~~~~~~~~~~~v--~~~~-----~D~~d~~~l~~~~~~~d~vi~ 71 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI--DHFHIGVRNVEKVPDDWRGKV--SVRQ-----LDYFNQESMVEAFKGMDTVVF 71 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC--TTEEEEESSGGGSCGGGBTTB--EEEE-----CCTTCHHHHHHHTTTCSEEEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC--CcEEEEECCHHHHHHhhhCCC--EEEE-----cCCCCHHHHHHHHhCCCEEEE
Confidence 68999995 99999999999987 7 899999999865443322221 1000 000001234567889999999
Q ss_pred ccch
Q 012596 206 AMPV 209 (460)
Q Consensus 206 aVp~ 209 (460)
+...
T Consensus 72 ~a~~ 75 (289)
T 3e48_A 72 IPSI 75 (289)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 8753
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0068 Score=59.75 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=55.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHH---HhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSI---NEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~----~~~~~l---~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
.+|+|.|.|+ |.+|..++..|.+.| ++|++++|++ ++.+.+ ...+.. .+.. ++ .-.+++.+++
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~l~~~~v~--~~~~-Dl----~d~~~l~~~~ 79 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAH--RPTYILARPGPRSPSKAKIFKALEDKGAI--IVYG-LI----NEQEAMEKIL 79 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHTTCE--EEEC-CT----TCHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC--CCEEEEECCCCCChhHHHHHHHHHhCCcE--EEEe-ec----CCHHHHHHHH
Confidence 3579999998 999999999999999 9999999976 444433 222221 1100 00 0012345566
Q ss_pred C--CCcEEEEccchh---cHHHHHHHhhh
Q 012596 198 L--GADYCLHAMPVQ---FSSSFLEGISD 221 (460)
Q Consensus 198 ~--~aDiVilaVp~~---~~~~vl~~i~~ 221 (460)
+ ++|+||.+.... ....+++....
T Consensus 80 ~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~ 108 (346)
T 3i6i_A 80 KEHEIDIVVSTVGGESILDQIALVKAMKA 108 (346)
T ss_dssp HHTTCCEEEECCCGGGGGGHHHHHHHHHH
T ss_pred hhCCCCEEEECCchhhHHHHHHHHHHHHH
Confidence 7 899999988753 23445554443
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0038 Score=61.00 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=47.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
++|||.|.|+ |.+|..++..|++.| ++|++++|++...+.+...+. .++. ..+.-.++..++++++|+||
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~l~~~~~--~~~~-----~Dl~d~~~~~~~~~~~d~vi 82 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAG--HDLVLIHRPSSQIQRLAYLEP--ECRV-----AEMLDHAGLERALRGLDGVI 82 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECTTSCGGGGGGGCC--EEEE-----CCTTCHHHHHHHTTTCSEEE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEecChHhhhhhccCCe--EEEE-----ecCCCHHHHHHHHcCCCEEE
Confidence 3579999995 999999999999999 999999998754433322111 1100 00000113446678899999
Q ss_pred Eccc
Q 012596 205 HAMP 208 (460)
Q Consensus 205 laVp 208 (460)
.+..
T Consensus 83 h~a~ 86 (342)
T 2x4g_A 83 FSAG 86 (342)
T ss_dssp EC--
T ss_pred ECCc
Confidence 8764
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.032 Score=55.78 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=58.7
Q ss_pred chhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC---CHHHHHHHHh-hcCCCccCCCC-----CC--C-CceE
Q 012596 121 TDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR---DPAVCQSINE-KHCNCRYFPEQ-----KL--P-ENVI 188 (460)
Q Consensus 121 ~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r---~~~~~~~l~~-~g~~~~~~~~~-----~l--~-~~i~ 188 (460)
++-.++|+||||+|+|++|..+.+.|.+.. +.+|+.++- +.+....+.+ .....++.... .+ . ..+.
T Consensus 11 ~~~~~~~ikVgI~G~G~iGr~llR~l~~~p-~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~ 89 (354)
T 3cps_A 11 RENLYFQGTLGINGFGRIGRLVLRACMERN-DITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVK 89 (354)
T ss_dssp -------CEEEEECCSHHHHHHHHHHHTCS-SCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEE
T ss_pred ccCcCcceEEEEECCCHHHHHHHHHHHcCC-CeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEE
Confidence 333335689999999999999999998763 367776653 2222222221 11111111110 11 0 1233
Q ss_pred Ee--CCHHhhc---CCCcEEEEccchhcHHHHHHHhhhcCCCCC--eEEEec
Q 012596 189 AT--TDAKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS 233 (460)
Q Consensus 189 a~--~~~~ea~---~~aDiVilaVp~~~~~~vl~~i~~~l~~~~--iIV~~~ 233 (460)
+. .++++.. .++|+||.|++.....+... .+++.|. +||+..
T Consensus 90 v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~p 138 (354)
T 3cps_A 90 VFQAKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAP 138 (354)
T ss_dssp EECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSC
T ss_pred EEecCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCC
Confidence 33 2555532 47999999999877665443 3444566 777765
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.007 Score=58.23 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=54.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHH---hhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSIN---EKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~-------~~~~~l~---~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
||+|.|.|+ |.+|..++..|.+.| ++|++++|++ ++.+.+. ..+.. .+.. ++ .-.+++.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~--~v~~-D~----~d~~~l~~ 72 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG--NPTYALVRKTITAANPETKEELIDNYQSLGVI--LLEG-DI----NDHETLVK 72 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT--CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCE--EEEC-CT----TCHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC--CcEEEEECCCcccCChHHHHHHHHHHHhCCCE--EEEe-CC----CCHHHHHH
Confidence 578999996 999999999999999 8999999986 5444332 22221 1000 00 00123456
Q ss_pred hcCCCcEEEEccchh---cHHHHHHHh
Q 012596 196 ALLGADYCLHAMPVQ---FSSSFLEGI 219 (460)
Q Consensus 196 a~~~aDiVilaVp~~---~~~~vl~~i 219 (460)
+++++|+||.+.... ....+++..
T Consensus 73 ~~~~~d~vi~~a~~~~~~~~~~l~~aa 99 (307)
T 2gas_A 73 AIKQVDIVICAAGRLLIEDQVKIIKAI 99 (307)
T ss_dssp HHTTCSEEEECSSSSCGGGHHHHHHHH
T ss_pred HHhCCCEEEECCcccccccHHHHHHHH
Confidence 778999999988643 234444444
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0074 Score=58.60 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=55.4
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH------HHHHHH---HhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP------AVCQSI---NEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~------~~~~~l---~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+||+|.|.|+ |.+|..++..|++.| ++|++++|++ ++.+.+ ...+. ..... ++ .-.+++.+
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v--~~v~~-D~----~d~~~l~~ 73 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS--HPTFIYARPLTPDSTPSSVQLREEFRSMGV--TIIEG-EM----EEHEKMVS 73 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECCCCTTCCHHHHHHHHHHHHTTC--EEEEC-CT----TCHHHHHH
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC--CcEEEEECCcccccChHHHHHHHHhhcCCc--EEEEe-cC----CCHHHHHH
Confidence 3578999996 999999999999999 9999999985 333333 22222 11000 00 00123556
Q ss_pred hcCCCcEEEEccchh---cHHHHHHHhhh
Q 012596 196 ALLGADYCLHAMPVQ---FSSSFLEGISD 221 (460)
Q Consensus 196 a~~~aDiVilaVp~~---~~~~vl~~i~~ 221 (460)
+++++|+||.+.... ....+++...+
T Consensus 74 a~~~~d~vi~~a~~~~~~~~~~l~~aa~~ 102 (321)
T 3c1o_A 74 VLKQVDIVISALPFPMISSQIHIINAIKA 102 (321)
T ss_dssp HHTTCSEEEECCCGGGSGGGHHHHHHHHH
T ss_pred HHcCCCEEEECCCccchhhHHHHHHHHHH
Confidence 778999999987642 34455554433
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0088 Score=58.03 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=54.0
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH-HHH---HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQ---SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~---~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
++|.|.|+ |.+|..++..|.+.| ++|++++|++. ..+ .+...+.... ..+. .-.+++.++++++|+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~l~~~~v~~v-~~Dl------~d~~~l~~a~~~~d~ 82 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLG--HPTYVFTRPNSSKTTLLDEFQSLGAIIV-KGEL------DEHEKLVELMKKVDV 82 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECTTCSCHHHHHHHHHTTCEEE-ECCT------TCHHHHHHHHTTCSE
T ss_pred CeEEEECCCchHHHHHHHHHHHCC--CcEEEEECCCCchhhHHHHhhcCCCEEE-EecC------CCHHHHHHHHcCCCE
Confidence 58999995 999999999999999 89999999864 322 2233332110 0010 001234567789999
Q ss_pred EEEccchh---cHHHHHHHhh
Q 012596 203 CLHAMPVQ---FSSSFLEGIS 220 (460)
Q Consensus 203 VilaVp~~---~~~~vl~~i~ 220 (460)
||.+.... ....+++...
T Consensus 83 vi~~a~~~~~~~~~~l~~aa~ 103 (318)
T 2r6j_A 83 VISALAFPQILDQFKILEAIK 103 (318)
T ss_dssp EEECCCGGGSTTHHHHHHHHH
T ss_pred EEECCchhhhHHHHHHHHHHH
Confidence 99988643 2444554443
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.009 Score=59.54 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|||.|||+|..|.++|..|+++| ++|++++|++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G--~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHG--IKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence 89999999999999999999999 9999998754
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.025 Score=52.35 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=49.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~--G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
++|+|.|.| .|.+|..++..|++. | ++|++.+|+++..+.+ +.+..++.. + +.-.++..++++++|+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g--~~V~~~~r~~~~~~~~---~~~~~~~~~-D----~~d~~~~~~~~~~~d~ 72 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDK--FVAKGLVRSAQGKEKI---GGEADVFIG-D----ITDADSINPAFQGIDA 72 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTT--CEEEEEESCHHHHHHT---TCCTTEEEC-C----TTSHHHHHHHHTTCSE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCC--cEEEEEEcCCCchhhc---CCCeeEEEe-c----CCCHHHHHHHHcCCCE
Confidence 468999999 599999999999999 6 8999999998765543 111111100 0 0001134456778999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||.+..
T Consensus 73 vi~~a~ 78 (253)
T 1xq6_A 73 LVILTS 78 (253)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 998653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.078 Score=54.88 Aligned_cols=93 Identities=13% Similarity=0.247 Sum_probs=63.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH----HhhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA----KTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~----~ea~~~aDi 202 (460)
..+|.|+|+|.+|..+|..|.+ + ++|.++.+++++++.+.+.--+...+.+. .+|. ++-++++|+
T Consensus 235 ~~~v~I~GgG~ig~~lA~~L~~-~--~~v~iIE~d~~r~~~la~~l~~~~Vi~GD--------~td~~~L~ee~i~~~D~ 303 (461)
T 4g65_A 235 YRRIMIVGGGNIGASLAKRLEQ-T--YSVKLIERNLQRAEKLSEELENTIVFCGD--------AADQELLTEENIDQVDV 303 (461)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-T--SEEEEEESCHHHHHHHHHHCTTSEEEESC--------TTCHHHHHHTTGGGCSE
T ss_pred ccEEEEEcchHHHHHHHHHhhh-c--CceEEEecCHHHHHHHHHHCCCceEEecc--------ccchhhHhhcCchhhcE
Confidence 4789999999999999999864 4 89999999999999998753211111000 1122 223578999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEE
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
++.++..+...=+...+++.+....++.
T Consensus 304 ~ia~T~~De~Ni~~~llAk~~gv~kvIa 331 (461)
T 4g65_A 304 FIALTNEDETNIMSAMLAKRMGAKKVMV 331 (461)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEcccCcHHHHHHHHHHHHcCCccccc
Confidence 9999988766555555555555443433
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0053 Score=56.26 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=32.3
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
|||.|.| .|.+|..++..|++.| ++|++++|+++.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~ 36 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD--YQIYAGARKVEQ 36 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS--CEEEEEESSGGG
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCccc
Confidence 6899999 7999999999999999 999999999753
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.011 Score=56.80 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=49.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
++|+|.|.|+ |.+|..++..|.+.| +++|++.+|+++.. +.+...+.... ..+. .-.++..++++++|.
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~~V~~~~R~~~~~~~~~l~~~~~~~~-~~D~------~d~~~l~~~~~~~d~ 75 (299)
T 2wm3_A 4 DKKLVVVFGGTGAQGGSVARTLLEDG-TFKVRVVTRNPRKKAAKELRLQGAEVV-QGDQ------DDQVIMELALNGAYA 75 (299)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHC-SSEEEEEESCTTSHHHHHHHHTTCEEE-ECCT------TCHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcC-CceEEEEEcCCCCHHHHHHHHCCCEEE-EecC------CCHHHHHHHHhcCCE
Confidence 3579999997 999999999999876 27999999987543 33333332100 0000 001234566789999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||.+..
T Consensus 76 vi~~a~ 81 (299)
T 2wm3_A 76 TFIVTN 81 (299)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 999875
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.012 Score=56.51 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=31.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|||.|.|+ |-+|+.++..|.++| |+|+++.|++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G--~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG--HEVTLVSRKP 34 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCC
Confidence 79999997 999999999999999 9999999975
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.011 Score=56.40 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=33.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
++|||.|.|+|.+|+.++..|.+.| ++|++++|+.+
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~ 37 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQG--HEVTGLRRSAQ 37 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTT--CCEEEEECTTS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcc
Confidence 5689999999999999999999999 99999999864
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.023 Score=55.31 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=32.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|||+|.+|+.++..|+++|. -.++++|.+.
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGV-G~i~lvD~D~ 70 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGI-GKLLLFDYDK 70 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCC-CEEEEECCCc
Confidence 35799999999999999999999996 4799999876
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.021 Score=56.98 Aligned_cols=98 Identities=15% Similarity=0.231 Sum_probs=61.7
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.|.||+||| .|..|.-|.+.|.+.. ..++..+......-+.+.+.... +..+.. +.. .+.++...++|+||
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP-~~el~~l~S~~~aG~~~~~~~p~--~~~~l~----~~~-~~~~~~~~~~Dvvf 83 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHP-EAKITYLSSRTYAGKKLEEIFPS--TLENSI----LSE-FDPEKVSKNCDVLF 83 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCT-TEEEEEEECSTTTTSBHHHHCGG--GCCCCB----CBC-CCHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCC-CcEEEEEeCcccccCChHHhChh--hccCce----EEe-CCHHHhhcCCCEEE
Confidence 467999998 6999999999999874 35677665433211222211100 001111 111 14555447899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+|.....++...+ .|..||+++.-+
T Consensus 84 ~alp~~~s~~~~~~~-----~g~~VIDlSsdf 110 (351)
T 1vkn_A 84 TALPAGASYDLVREL-----KGVKIIDLGADF 110 (351)
T ss_dssp ECCSTTHHHHHHTTC-----CSCEEEESSSTT
T ss_pred ECCCcHHHHHHHHHh-----CCCEEEECChhh
Confidence 999988877766554 588999998644
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.05 Score=54.64 Aligned_cols=95 Identities=12% Similarity=0.191 Sum_probs=56.9
Q ss_pred CCeEEEEC-cchHHHHHHH-HHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLG-GGSFGTAMAA-HVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~-~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+||+|+| .|.+|..+.+ .|.+..+ ..+++++..+. .|.....+.+..+ .+.-..++++ .+++|+|
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s--------~G~~v~~~~g~~i--~~~~~~~~~~-~~~~DvV 69 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ--------LGQAAPSFGGTTG--TLQDAFDLEA-LKALDII 69 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS--------TTSBCCGGGTCCC--BCEETTCHHH-HHTCSEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC--------CCCCccccCCCce--EEEecCChHH-hcCCCEE
Confidence 47999999 9999999999 5554431 13455555431 1211111111111 1222234554 4789999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCC--eEEEeccC
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGL--PFISLSKG 235 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~--iIV~~~~G 235 (460)
|.|+|.....+....+.+ .|. ++|+.+.-
T Consensus 70 f~a~g~~~s~~~a~~~~~---~G~k~vVID~ss~ 100 (367)
T 1t4b_A 70 VTCQGGDYTNEIYPKLRE---SGWQGYWIDAASS 100 (367)
T ss_dssp EECSCHHHHHHHHHHHHH---TTCCCEEEECSST
T ss_pred EECCCchhHHHHHHHHHH---CCCCEEEEcCChh
Confidence 999998777776665543 344 88988753
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.1 Score=52.06 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..+|.|||+|.+|+.++..|+++|. -.++++|++.
T Consensus 117 ~~~~VlvvG~GglGs~va~~La~aGv-g~i~lvD~D~ 152 (353)
T 3h5n_A 117 KNAKVVILGCGGIGNHVSVILATSGI-GEIILIDNDQ 152 (353)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEECCB
T ss_pred hCCeEEEECCCHHHHHHHHHHHhCCC-CeEEEECCCc
Confidence 35799999999999999999999995 4799999874
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.011 Score=53.64 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=30.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..|+|||+|.-|.+.|..|+++| ++|+++++.+
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~ 35 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCC
Confidence 57999999999999999999999 9999999864
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.048 Score=54.50 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=58.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVi 204 (460)
..++|+|+|.|++|...|..|.+.| .+|+++|++++. .+..+.. . .... +.++++. +||+++
T Consensus 174 ~GktV~I~G~GnVG~~~A~~l~~~G--akVvvsD~~~~~-~~~a~~~-g------------a~~v-~~~ell~~~~DIli 236 (355)
T 1c1d_A 174 DGLTVLVQGLGAVGGSLASLAAEAG--AQLLVADTDTER-VAHAVAL-G------------HTAV-ALEDVLSTPCDVFA 236 (355)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHH-HHHHHHT-T------------CEEC-CGGGGGGCCCSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCccH-HHHHHhc-C------------CEEe-ChHHhhcCccceec
Confidence 3589999999999999999999998 899999998765 3333221 1 1222 4456556 899998
Q ss_pred Eccchhc-HHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 205 HAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 205 laVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
-|--... ..+-++. ++ ..+|+...||-.
T Consensus 237 P~A~~~~I~~~~~~~----lk-~~iVie~AN~p~ 265 (355)
T 1c1d_A 237 PCAMGGVITTEVART----LD-CSVVAGAANNVI 265 (355)
T ss_dssp ECSCSCCBCHHHHHH----CC-CSEECCSCTTCB
T ss_pred HhHHHhhcCHHHHhh----CC-CCEEEECCCCCC
Confidence 5422212 2233333 33 467888777643
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.016 Score=56.84 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=49.7
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHHHhhc-----CCCccCCCCCCCCceEEeCCHH
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSINEKH-----CNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~----~~~~~l~~~g-----~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
+++|+|.|.|+ |.+|..++..|.+.| ++|++++|+. +..+.+.... .+..++. ..+.-.++..
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~ 95 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLN--QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIE-----GDIRDLTTCE 95 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEE-----CCTTCHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEE-----ccCCCHHHHH
Confidence 45689999995 999999999999999 9999999954 3344443311 0111100 0000011345
Q ss_pred hhcCCCcEEEEccc
Q 012596 195 TALLGADYCLHAMP 208 (460)
Q Consensus 195 ea~~~aDiVilaVp 208 (460)
++++++|+||.+..
T Consensus 96 ~~~~~~d~Vih~A~ 109 (351)
T 3ruf_A 96 QVMKGVDHVLHQAA 109 (351)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhcCCCEEEECCc
Confidence 66779999998764
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.014 Score=56.44 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=47.6
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+|||.|.| .|.+|+.++..|.+.| ++|++++|++...+ +. +. .+. ...+. .++..++++++|+||.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~--~~--~~~-----~~Dl~-~~~~~~~~~~~d~Vih 68 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG--NTPIILTRSIGNKA-IN--DY--EYR-----VSDYT-LEDLINQLNDVDAVVH 68 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCC--------CC--EEE-----ECCCC-HHHHHHHTTTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC--CEEEEEeCCCCccc-CC--ce--EEE-----Ecccc-HHHHHHhhcCCCEEEE
Confidence 47999999 5999999999999999 99999999854333 32 11 110 01122 2345677889999998
Q ss_pred ccc
Q 012596 206 AMP 208 (460)
Q Consensus 206 aVp 208 (460)
+..
T Consensus 69 ~a~ 71 (311)
T 3m2p_A 69 LAA 71 (311)
T ss_dssp CCC
T ss_pred ccc
Confidence 754
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.058 Score=55.78 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=66.6
Q ss_pred CCCeEEEECcc----hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGGG----SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG----~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+.++|+|||++ .+|..+..+|.+.| ...|+.++.....+ .++.+..++.++.+..|
T Consensus 7 ~p~siAVvGas~~~~~~g~~v~~~l~~~g-~~~v~pVnP~~~~i-------------------~G~~~y~sl~~lp~~~D 66 (457)
T 2csu_A 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEEV-------------------QGVKAYKSVKDIPDEID 66 (457)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSEE-------------------TTEECBSSTTSCSSCCS
T ss_pred CCCeEEEECcCCCCCchHHHHHHHHHHcC-CCEEEEECCCCCeE-------------------CCEeccCCHHHcCCCCC
Confidence 46899999998 89999999999886 47887777652100 12445567777666799
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++++++|...+.+++++..+. . =..+|.++.|+.
T Consensus 67 lavi~vp~~~~~~~v~e~~~~-G-i~~vv~~s~G~~ 100 (457)
T 2csu_A 67 LAIIVVPKRFVKDTLIQCGEK-G-VKGVVIITAGFG 100 (457)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-T-CCEEEECCCSST
T ss_pred EEEEecCHHHHHHHHHHHHHc-C-CCEEEEecCCCC
Confidence 999999999998888877653 1 135677787884
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.017 Score=61.20 Aligned_cols=94 Identities=12% Similarity=0.177 Sum_probs=61.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH-hhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK-TALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~-ea~~~aDiVila 206 (460)
++|.|+|+|.+|..+|..|.+.| ++|++++.+++.++.+. .....+..-+ +.++ .-++++|.++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~-----~~i~gD~t~~------~~L~~agi~~ad~vi~~ 415 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKP--VPFILIDRQESPVCNDH-----VVVYGDATVG------QTLRQAGIDRASGIIVT 415 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCCSSCCSS-----CEEESCSSSS------THHHHHTTTSCSEEEEC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECChHHHhhcC-----CEEEeCCCCH------HHHHhcCccccCEEEEE
Confidence 78999999999999999999999 99999999987544221 0011110000 0112 235789999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
++++...-++-.+++.+.++..+|.-.+
T Consensus 416 ~~~d~~ni~~~~~ak~l~~~~~iiar~~ 443 (565)
T 4gx0_A 416 TNDDSTNIFLTLACRHLHSHIRIVARAN 443 (565)
T ss_dssp CSCHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred CCCchHHHHHHHHHHHHCCCCEEEEEEC
Confidence 9987544444444455555545555544
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.062 Score=51.34 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=35.5
Q ss_pred hhccCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 122 DILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 122 ~~~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.|++.+++.|.|+ |.+|.++|..|++.| ++|++.+|+.+..+.+.+
T Consensus 19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~ 66 (279)
T 3sju_A 19 SHMSRPQTAFVTGVSSGIGLAVARTLAARG--IAVYGCARDAKNVSAAVD 66 (279)
T ss_dssp ------CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 34556678889994 789999999999999 999999999887665543
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0074 Score=57.44 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=49.8
Q ss_pred CeEEEECc-chHHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~--G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
|+|.|.|+ |.+|+.++..|.+. | ++|++++|+++..+.+...+.... ..+. .-.++..++++++|+||
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g--~~V~~~~r~~~~~~~l~~~~~~~~-~~D~------~d~~~l~~~~~~~d~vi 71 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA--SQIIAIVRNVEKASTLADQGVEVR-HGDY------NQPESLQKAFAGVSKLL 71 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG--GGEEEEESCTTTTHHHHHTTCEEE-ECCT------TCHHHHHHHTTTCSEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC--CeEEEEEcCHHHHhHHhhcCCeEE-Eecc------CCHHHHHHHHhcCCEEE
Confidence 57999997 99999999999998 8 999999998776655544322100 0010 00123456678899999
Q ss_pred Eccc
Q 012596 205 HAMP 208 (460)
Q Consensus 205 laVp 208 (460)
.+..
T Consensus 72 ~~a~ 75 (287)
T 2jl1_A 72 FISG 75 (287)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8764
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.025 Score=55.97 Aligned_cols=78 Identities=24% Similarity=0.421 Sum_probs=52.5
Q ss_pred ccCCCeEEEEC-cchHHHHHHHHHHhc-CCCC-eEEEEeCCHHHHHHHHhhc--CCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 124 LERTNKVVVLG-GGSFGTAMAAHVANK-KSQL-KVYMLMRDPAVCQSINEKH--CNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 124 ~~~~~kI~IIG-aG~mG~~~A~~La~~-G~~~-~V~v~~r~~~~~~~l~~~g--~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
|++.|+|.|.| .|.+|..++..|++. | + +|++++|++...+.+.+.- ....++. ..+.-.++..++++
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~-----~Dl~d~~~l~~~~~ 90 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTN--AKKIIVYSRDELKQSEMAMEFNDPRMRFFI-----GDVRDLERLNYALE 90 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCC--CSEEEEEESCHHHHHHHHHHHCCTTEEEEE-----CCTTCHHHHHHHTT
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCC--CCEEEEEECChhhHHHHHHHhcCCCEEEEE-----CCCCCHHHHHHHHh
Confidence 44568999999 599999999999998 8 6 9999999988766654421 1111100 00000113345677
Q ss_pred CCcEEEEccc
Q 012596 199 GADYCLHAMP 208 (460)
Q Consensus 199 ~aDiVilaVp 208 (460)
++|+||.+..
T Consensus 91 ~~D~Vih~Aa 100 (344)
T 2gn4_A 91 GVDICIHAAA 100 (344)
T ss_dssp TCSEEEECCC
T ss_pred cCCEEEECCC
Confidence 8999998764
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0081 Score=59.62 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=34.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHH
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQ 166 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~ 166 (460)
++|||.|.| .|.+|+.++..|.+. | ++|++++|+.+...
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~ 63 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTD--WEVFGMDMQTDRLG 63 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSS--CEEEEEESCCTTTG
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--CEEEEEeCChhhhh
Confidence 468999999 599999999999998 8 99999999875443
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.037 Score=53.28 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=50.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--CCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--TDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~--~~~~ea~~~aDi 202 (460)
+.+++.|+| +|.+|.+++..|++.| .+|++++|+.++.+++.+.-.. . .+... ....++ ++..++++++|+
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G--~~V~i~~R~~~~~~~l~~~~~~-~--~~~~~-~~~D~~~~~~~~~~~~~~Dv 191 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKLDKAQAAADSVNK-R--FKVNV-TAAETADDASRAEAVKGAHF 191 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHH-H--HTCCC-EEEECCSHHHHHHHTTTCSE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEECCHHHHHHHHHHHHh-c--CCcEE-EEecCCCHHHHHHHHHhCCE
Confidence 357899999 9999999999999999 8899999998877665432100 0 00000 000111 123455667888
Q ss_pred EEEccch
Q 012596 203 CLHAMPV 209 (460)
Q Consensus 203 VilaVp~ 209 (460)
||-+++.
T Consensus 192 lVn~ag~ 198 (287)
T 1lu9_A 192 VFTAGAI 198 (287)
T ss_dssp EEECCCT
T ss_pred EEECCCc
Confidence 8888763
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.046 Score=54.42 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=58.0
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+||+||| .|..|.-|.+.|.++.+. .++.++.... ..|.... +.+ ..+.+.+-..+.+.++|+||+
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~-------~aG~~~~-~~~----~~~~~~~~~~~~~~~~Dvvf~ 69 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASAR-------SQGRKLA-FRG----QEIEVEDAETADPSGLDIALF 69 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTT-------TSSCEEE-ETT----EEEEEEETTTSCCTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcc-------cCCCcee-ecC----CceEEEeCCHHHhccCCEEEE
Confidence 6899999 799999999999986421 2456554332 1132111 111 112222111234578999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+|.....+....+.+ .|..+|+++.
T Consensus 70 a~~~~~s~~~a~~~~~---~G~~vID~Sa 95 (344)
T 3tz6_A 70 SAGSAMSKVQAPRFAA---AGVTVIDNSS 95 (344)
T ss_dssp CSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred CCChHHHHHHHHHHHh---CCCEEEECCC
Confidence 9998877776665543 5788999875
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.22 Score=51.39 Aligned_cols=71 Identities=10% Similarity=0.060 Sum_probs=48.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVi 204 (460)
.++|.|||+|.+|..-+..|.+.| .+|++++.+.. ..+.+.+.+. ..+ .... +.. .+.++|+||
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~g--a~V~vi~~~~~~~~~~l~~~~~-i~~----------~~~~~~~~-~l~~~~lVi 77 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFIPQFTVWANEGM-LTL----------VEGPFDET-LLDSCWLAI 77 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCCHHHHHHHTTTS-CEE----------EESSCCGG-GGTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCc--CEEEEEcCCCCHHHHHHHhcCC-EEE----------EECCCCcc-ccCCccEEE
Confidence 589999999999999999999999 99999997532 3444433221 110 0001 222 357899999
Q ss_pred Eccchhc
Q 012596 205 HAMPVQF 211 (460)
Q Consensus 205 laVp~~~ 211 (460)
.++....
T Consensus 78 ~at~~~~ 84 (457)
T 1pjq_A 78 AATDDDT 84 (457)
T ss_dssp ECCSCHH
T ss_pred EcCCCHH
Confidence 9876554
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0078 Score=55.80 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=47.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~--~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
+.|+|.|.| .|.+|..++..|++.| + +|++++|+++..+.....+. .++ ...+.-.++..++++++|+
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G--~~~~V~~~~r~~~~~~~~~~~~~--~~~-----~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQG--LFSKVTLIGRRKLTFDEEAYKNV--NQE-----VVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHT--CCSEEEEEESSCCCCCSGGGGGC--EEE-----ECCGGGGGGGGGGGSSCSE
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCC--CCCEEEEEEcCCCCccccccCCc--eEE-----ecCcCCHHHHHHHhcCCCE
Confidence 457999999 6999999999999999 8 99999998643221111110 000 0000001234455678899
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||.+..
T Consensus 88 vi~~ag 93 (242)
T 2bka_A 88 GFCCLG 93 (242)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998765
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.037 Score=55.84 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-------~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~ 199 (460)
..||.|+|+|..|..+|+.|...|. .+|+++|++- +.+..+++. + ....-+ .....++.|++++
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~-----f-a~~~~~--~~~~~~L~eav~~ 258 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLD-----I-AKVTNR--EFKSGTLEDALEG 258 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---C-----H-HHHHSC--TTCCCSCSHHHHT
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHH-----H-hhccCc--ccchhhHHHHhcc
Confidence 4699999999999999999999982 3999999862 101100000 0 000000 0012367888999
Q ss_pred CcEEEEccch-hcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 200 ADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 200 aDiVilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|++|=+... -..+++++. |.++.+|+.++|-.
T Consensus 259 ADV~IG~Sapgl~T~EmVk~----Ma~~pIIfalsNPt 292 (398)
T 2a9f_A 259 ADIFIGVSAPGVLKAEWISK----MAARPVIFAMANPI 292 (398)
T ss_dssp TCSEEECCSTTCCCHHHHHT----SCSSCEEEECCSSS
T ss_pred CCEEEecCCCCCCCHHHHHh----hCCCCEEEECCCCC
Confidence 9998765432 235666555 45789999999954
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.028 Score=55.49 Aligned_cols=34 Identities=41% Similarity=0.571 Sum_probs=31.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
++.+|.|||+|.+|.+.|..|+++| .+|+++++.
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G--~~V~vle~~ 38 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKG--YSVHILARD 38 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CEEEEEecc
Confidence 3578999999999999999999999 899999975
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.073 Score=55.98 Aligned_cols=74 Identities=8% Similarity=-0.043 Sum_probs=50.1
Q ss_pred hhccCCCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 122 DILERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~v~~r~~--~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
.++.+.++|-|||.|..|.+ +|..|.+.| ++|+++|... ...+.+.+.|.. +..-.+++....
T Consensus 14 ~~~~~~~~i~~iGiGg~Gms~lA~~l~~~G--~~V~~sD~~~~~~~~~~L~~~gi~------------~~~G~~~~~~~~ 79 (524)
T 3hn7_A 14 NLYFQGMHIHILGICGTFMGSLALLARALG--HTVTGSDANIYPPMSTQLEQAGVT------------IEEGYLIAHLQP 79 (524)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCCTTHHHHHHHTTCE------------EEESCCGGGGCS
T ss_pred ceeecCCEEEEEEecHhhHHHHHHHHHhCC--CEEEEECCCCCcHHHHHHHHCCCE------------EECCCCHHHcCC
Confidence 36667799999999999986 788889999 9999999863 345667776642 112224444446
Q ss_pred CCcEEEEc--cch
Q 012596 199 GADYCLHA--MPV 209 (460)
Q Consensus 199 ~aDiVila--Vp~ 209 (460)
++|+||++ +|.
T Consensus 80 ~~d~vV~Spgi~~ 92 (524)
T 3hn7_A 80 APDLVVVGNAMKR 92 (524)
T ss_dssp CCSEEEECTTCCT
T ss_pred CCCEEEECCCcCC
Confidence 79999985 553
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.083 Score=49.79 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=35.7
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++|.|.| .|.+|..+|..|++.| ++|++.+|+.+..+.+.+
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 71 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKLGSLG--ARVVLTARDVEKLRAVER 71 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 46788888 5899999999999999 899999999887665544
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.017 Score=56.35 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=33.3
Q ss_pred ccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 124 ~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+++|+|.|.| .|.+|..++..|++.| ++|++.+|+.+
T Consensus 2 M~~~~~vlVTGatG~iG~~l~~~L~~~G--~~V~~~~r~~~ 40 (341)
T 3enk_A 2 MSTKGTILVTGGAGYIGSHTAVELLAHG--YDVVIADNLVN 40 (341)
T ss_dssp CCSSCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECCCSS
T ss_pred CCCCcEEEEecCCcHHHHHHHHHHHHCC--CcEEEEecCCc
Confidence 44568999999 5999999999999999 99999998754
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=1.7 Score=41.73 Aligned_cols=165 Identities=15% Similarity=0.205 Sum_probs=98.3
Q ss_pred CceEEeCCHHhhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEE
Q 012596 185 ENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS 263 (460)
Q Consensus 185 ~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~ 263 (460)
-++++++|-.|+++++|++|+-+|-.. ..++++.|.+++++|++|.+..+ +.+- .+...++. ++.. +..+.+
T Consensus 127 aGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCT-ipp~---~ly~~le~-l~R~--DvgIsS 199 (358)
T 2b0j_A 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT-IPTT---KFAKIFKD-LGRE--DLNITS 199 (358)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSS-SCHH---HHHHHHHH-TTCT--TSEEEE
T ss_pred cCcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccC-CCHH---HHHHHHHH-hCcc--cCCeec
Confidence 367888888899999999999999654 78899999999999998887654 4442 33444444 4543 233322
Q ss_pred -CcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEE-cCChHHHH--HHHHHHHHHHHHHHHHh----c-ccC
Q 012596 264 -GPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST-SSDVTGVE--IAGALKNVLAIAAGIVV----G-MNL 334 (460)
Q Consensus 264 -gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~~--~~kalkNv~ai~~g~~~----~-~kl 334 (460)
-|.-.-+ ..|+ ...-.+-.+.++.+++.++-++.+-..+. ..|+.+.. ++.++.-+. .+|+.+ + ..+
T Consensus 200 ~HPaaVPg-t~Gq-~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DMgs~vTAv~--~AGiL~Y~~~vtkIl 275 (358)
T 2b0j_A 200 YHPGCVPE-MKGQ-VYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDMCSAVTATV--YAGLLAYRDAVTKIL 275 (358)
T ss_dssp CBCSSCTT-TCCC-EEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHSTTHHHHHHH--HHHHHHHHHHHHTTS
T ss_pred cCCCCCCC-CCCc-cccccccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhhHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 2221111 1333 22223335789999999999987655543 44444321 222222110 123321 1 123
Q ss_pred CCcH--HHHHHHHHHHHHHHHHHHcCCC
Q 012596 335 GNNS--MAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 335 ~~n~--~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+.+. ....+...+.-+..|-+..|++
T Consensus 276 gAP~~mie~q~~esL~tiasLve~~GI~ 303 (358)
T 2b0j_A 276 GAPADFAQMMADEALTQIHNLMKEKGIA 303 (358)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3332 2355667778888888999987
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.13 Score=50.82 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=58.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcC-CCCeEEEEe-C-CHHHHHHHHhhc-CCCccCCC-----CCC--C-CceEEe--CCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKK-SQLKVYMLM-R-DPAVCQSINEKH-CNCRYFPE-----QKL--P-ENVIAT--TDA 193 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G-~~~~V~v~~-r-~~~~~~~l~~~g-~~~~~~~~-----~~l--~-~~i~a~--~~~ 193 (460)
+||||+|+|.+|..+.+.|.+++ .+.+|+.++ + +.+....+.+.. ...++... ..+ . ..+.+. .++
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 80 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence 48999999999999999998762 236777554 3 444443333211 11111111 011 1 134443 255
Q ss_pred Hhhc-C--CCcEEEEccchhcHHHHHHHhhhcCCCCC--eEEEec
Q 012596 194 KTAL-L--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS 233 (460)
Q Consensus 194 ~ea~-~--~aDiVilaVp~~~~~~vl~~i~~~l~~~~--iIV~~~ 233 (460)
++.- . ++|+||.|+|.....+...... +.|. +||+..
T Consensus 81 ~~l~w~~~~vDvV~~atg~~~s~e~a~~~l---~aGakkvVId~~ 122 (332)
T 1hdg_O 81 SKLPWKDLGVDFVIESTGVFRNREKAELHL---QAGAKKVIITAP 122 (332)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred HHCcccccCCCEEEECCccchhHHHHHHHH---HcCCcEEEEeCC
Confidence 5431 2 7999999999776655444332 2344 777654
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.2 Score=50.37 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcC-CCCeEEEEe-C-CHHHHHHHHhhcC-CCccCCC-----CCC--C-CceEE--eCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVYMLM-R-DPAVCQSINEKHC-NCRYFPE-----QKL--P-ENVIA--TTD 192 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G-~~~~V~v~~-r-~~~~~~~l~~~g~-~~~~~~~-----~~l--~-~~i~a--~~~ 192 (460)
++||||+|+|++|..+.+.|.+++ .+.+|+.++ + +.+....+.+..- .-++... ..+ . ..+.+ ..|
T Consensus 2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (380)
T 2d2i_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (380)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence 369999999999999999998762 235666544 3 4444434433211 0011111 111 1 12333 235
Q ss_pred HHhhc---CCCcEEEEccchhcHHHHHHH
Q 012596 193 AKTAL---LGADYCLHAMPVQFSSSFLEG 218 (460)
Q Consensus 193 ~~ea~---~~aDiVilaVp~~~~~~vl~~ 218 (460)
+++.. .++|+||.|++.....+....
T Consensus 82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~ 110 (380)
T 2d2i_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASK 110 (380)
T ss_dssp GGGCCHHHHTCCEEEECSSSCCBHHHHHH
T ss_pred hHHCCcccCCCCEEEECCCccccHHHHHH
Confidence 65532 279999999997765554443
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.2 Score=49.63 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=56.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcC-CCCeEEEEe-C-CHHHHHHHHhhc-CCCccCC------CCC--CC-CceEEe--C
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVYMLM-R-DPAVCQSINEKH-CNCRYFP------EQK--LP-ENVIAT--T 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G-~~~~V~v~~-r-~~~~~~~l~~~g-~~~~~~~------~~~--l~-~~i~a~--~ 191 (460)
++||||+|+|++|..+.+.|.+++ ...+|+.++ . +.+....+-+.- ..-++.. +.. +. ..+.+. .
T Consensus 1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~ 80 (337)
T 1rm4_O 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 80 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence 368999999999999999998762 124565444 2 333333333221 0001111 111 11 122222 3
Q ss_pred CHHhh-cC--CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 192 DAKTA-LL--GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 192 ~~~ea-~~--~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++.+. .. ++|+||.|++.....+...... +.|..+|.++
T Consensus 81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l---~~Gak~V~iS 122 (337)
T 1rm4_O 81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHL---QAGAKKVLIT 122 (337)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHH---HTTCSEEEES
T ss_pred ChhhCcccccCCCEEEECCCchhhHHHHHHHH---HcCCEEEEEC
Confidence 55442 23 7999999999776655544332 2355555554
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.026 Score=55.17 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.0
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
++..+|.|||+|..|.+.|..|+++| ++|+++++.+
T Consensus 2 ~~~~dvvIIG~G~~Gl~~A~~La~~G--~~V~vlE~~~ 37 (369)
T 3dme_A 2 STDIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAE 37 (369)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCC
Confidence 34568999999999999999999999 8999999874
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.2 Score=49.55 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=58.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEe-C-CHHHHHHHHhhcC-CCccCCCC-----CCC---CceEEe--CCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM-R-DPAVCQSINEKHC-NCRYFPEQ-----KLP---ENVIAT--TDA 193 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~-r-~~~~~~~l~~~g~-~~~~~~~~-----~l~---~~i~a~--~~~ 193 (460)
++||||+|.|++|..+.+.|.++. +.+|+.++ + +.+....+.+..- ..++.... .+. +.+.+. .|+
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~~-~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 79 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKRS-DIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 79 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCS-SEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEEECcCHHHHHHHHHHHcCC-CeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence 369999999999999999998764 35666544 3 3333333333211 11111100 110 112222 245
Q ss_pred Hhhc---CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 194 KTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 194 ~ea~---~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
++.- .++|+||.|+|.....+..... ++.|..+|+++..
T Consensus 80 ~~i~w~~~~vDvVf~atg~~~s~e~a~~~---l~~GakvVdlSa~ 121 (330)
T 1gad_O 80 ANLKWDEVGVDVVAEATGLFLTDETARKH---ITAGAKKVVMTGP 121 (330)
T ss_dssp GGGCHHHHTCSEEEECSSSCCSHHHHTHH---HHTTCSEEEESSC
T ss_pred hhCccccccCCEEEECCCccccHHHHHHH---HHCCCEEEEECCC
Confidence 4421 4799999999977665544333 3346666666543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.076 Score=52.41 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
...+|.|+|+|.+|...+..+...| .+|++.++++++.+.+++.|... + + .+.++..+.+|+||-
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~-----------v-~-~~~~~~~~~~D~vid 240 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALSMGVKH-----------F-Y-TDPKQCKEELDFIIS 240 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHHTTCSE-----------E-E-SSGGGCCSCEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHhcCCCe-----------e-c-CCHHHHhcCCCEEEE
Confidence 3579999999999999888888788 79999999998888877766421 1 1 344444447899999
Q ss_pred ccchh-cHHHHHHHhhhcCCCCCeEEEe
Q 012596 206 AMPVQ-FSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 206 aVp~~-~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
++... .+...++ .++++..++.+
T Consensus 241 ~~g~~~~~~~~~~----~l~~~G~iv~~ 264 (348)
T 3two_A 241 TIPTHYDLKDYLK----LLTYNGDLALV 264 (348)
T ss_dssp CCCSCCCHHHHHT----TEEEEEEEEEC
T ss_pred CCCcHHHHHHHHH----HHhcCCEEEEE
Confidence 99876 4554443 34445555554
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.2 Score=49.81 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=58.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-------------------HHHHHHHhh--cCCCccCCCCCCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------------------AVCQSINEK--HCNCRYFPEQKLPE 185 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-------------------~~~~~l~~~--g~~~~~~~~~~l~~ 185 (460)
..+|.|||+|.+|+.++..|+..|. ..++++|.+. .+++.+.+. ..+ |+.
T Consensus 36 ~~~VlivG~GGlG~~ia~~La~~Gv-g~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln----p~v---- 106 (346)
T 1y8q_A 36 ASRVLLVGLKGLGAEIAKNLILAGV-KGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN----PMV---- 106 (346)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC----TTS----
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC----CCe----
Confidence 5799999999999999999999995 4799997542 122222221 011 111
Q ss_pred ceEEe-----CCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 186 NVIAT-----TDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 186 ~i~a~-----~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.+.+. ....+.+.++|+||.|+-+...+..+....... +..+|+.
T Consensus 107 ~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~--~ip~i~~ 156 (346)
T 1y8q_A 107 DVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKN--SIKFFTG 156 (346)
T ss_dssp EEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHT--TCEEEEE
T ss_pred EEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 11111 123456788999999987766555555543322 3455543
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.17 Score=50.86 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=56.8
Q ss_pred CeEEEEC-cchHHHHHHH-HHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLG-GGSFGTAMAA-HVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~-~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
||||||| .|..|.-|.+ .|.++.+ ..++.++..+.. |.....+.+..+ .+...+++++ ++++|+||
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~a--------G~~~~~~~~~~~--~~~~~~~~~~-~~~~Dvvf 69 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI--------GVPAPNFGKDAG--MLHDAFDIES-LKQLDAVI 69 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSST--------TSBCCCSSSCCC--BCEETTCHHH-HTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEecccc--------CcCHHHhCCCce--EEEecCChhH-hccCCEEE
Confidence 6899999 5999999999 7776541 135555543221 222111222111 1232234444 57999999
Q ss_pred EccchhcHHHHHHHhhhcCCCC--CeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~--~iIV~~~~ 234 (460)
+|+|.....+....+.+ .| .+||+++.
T Consensus 70 ~a~~~~~s~~~~~~~~~---~G~k~~VID~ss 98 (370)
T 3pzr_A 70 TCQGGSYTEKVYPALRQ---AGWKGYWIDAAS 98 (370)
T ss_dssp ECSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred ECCChHHHHHHHHHHHH---CCCCEEEEeCCc
Confidence 99998877776665543 34 48898875
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.033 Score=55.29 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=48.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
.|+|.|.|+ |.+|..++..|++.| ++|++++|+++.. +.+.... +...+.. ++ +.-.++..++++++|.|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~l~~~~-~v~~v~~-D~---l~d~~~l~~~~~~~d~V 77 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG--HHVRAQVHSLKGLIAEELQAIP-NVTLFQG-PL---LNNVPLMDTLFEGAHLA 77 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT--CCEEEEESCSCSHHHHHHHTST-TEEEEES-CC---TTCHHHHHHHHTTCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCCChhhHHHHhhcC-CcEEEEC-Cc---cCCHHHHHHHHhcCCEE
Confidence 578999995 999999999999998 9999999987543 3333210 1111000 00 00001245567899999
Q ss_pred EEccch
Q 012596 204 LHAMPV 209 (460)
Q Consensus 204 ilaVp~ 209 (460)
|.+...
T Consensus 78 i~~a~~ 83 (352)
T 1xgk_A 78 FINTTS 83 (352)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 977653
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.15 Score=50.65 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=52.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcC-CCCeEEEEe-C-CHHHHHHHHhhcC-CCccCCCC-----CC--C-CceEE--eCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVYMLM-R-DPAVCQSINEKHC-NCRYFPEQ-----KL--P-ENVIA--TTD 192 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G-~~~~V~v~~-r-~~~~~~~l~~~g~-~~~~~~~~-----~l--~-~~i~a--~~~ 192 (460)
++||||+|+|++|..+.+.|.+++ .+.+|+.++ + +++....+.+.-- .-++.... .+ . ..+.+ ..|
T Consensus 2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (339)
T 3b1j_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence 369999999999999999998762 235666444 3 4444444433210 00111111 11 1 12333 245
Q ss_pred HHhhc---CCCcEEEEccchhcHHHHHHH
Q 012596 193 AKTAL---LGADYCLHAMPVQFSSSFLEG 218 (460)
Q Consensus 193 ~~ea~---~~aDiVilaVp~~~~~~vl~~ 218 (460)
+++.. .++|+||.|++.....+....
T Consensus 82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~ 110 (339)
T 3b1j_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASK 110 (339)
T ss_dssp GGGSCTTTTTCCEEEECSSSCCBHHHHHH
T ss_pred hHHCcccccCCCEEEECCCccccHHHHHH
Confidence 65532 278999999997665554443
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.21 Score=49.55 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=57.2
Q ss_pred CCeEEEECcchHHHHHHHHHHh---cCCCCeEEEEe-C-CHHHHHHHHhhc-CCCccCCC-----CCC---CCceEEe--
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN---KKSQLKVYMLM-R-DPAVCQSINEKH-CNCRYFPE-----QKL---PENVIAT-- 190 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~---~G~~~~V~v~~-r-~~~~~~~l~~~g-~~~~~~~~-----~~l---~~~i~a~-- 190 (460)
++||||+|+|++|..+.+.|.+ +. +.+|+.++ + +++....+-+.. ...++... ..+ ...+.+.
T Consensus 2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~-~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~ 80 (339)
T 2x5j_O 2 TVRVAINGFGRIGRNVVRALYESGRRA-EITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHE 80 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTSGGG-TEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCCC-CEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEec
Confidence 3699999999999999999987 42 25666444 3 444444443311 10011100 011 1123333
Q ss_pred CCHHhhc-C--CCcEEEEccchhcHHHHHHHhhhcCCCCC--eEEEec
Q 012596 191 TDAKTAL-L--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS 233 (460)
Q Consensus 191 ~~~~ea~-~--~aDiVilaVp~~~~~~vl~~i~~~l~~~~--iIV~~~ 233 (460)
.|+++.. . ++|+||.|++.....+......+ .|. +||+..
T Consensus 81 ~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~ 125 (339)
T 2x5j_O 81 RSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIA---AGAKKVLFSHP 125 (339)
T ss_dssp SSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHH---TTCSEEEESSC
T ss_pred CChHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCCEEEEecc
Confidence 3555421 1 79999999998766555444332 333 466654
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.028 Score=57.72 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=61.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC---eEEEEe----CC----HH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL---KVYMLM----RD----PA-VCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~---~V~v~~----r~----~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
..||.|+|+|.+|.+++..|.+.| . +|+++| |+ +. ..+.+.... ..+... .... ....++.
T Consensus 186 ~~rvlvlGAGgAg~aia~~L~~~G--~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~--~~~a~~--~~~~-~~~~~L~ 258 (439)
T 2dvm_A 186 EITLALFGAGAAGFATLRILTEAG--VKPENVRVVELVNGKPRILTSDLDLEKLFPYR--GWLLKK--TNGE-NIEGGPQ 258 (439)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTT--CCGGGEEEEEEETTEEEECCTTSCHHHHSTTC--HHHHTT--SCTT-CCCSSHH
T ss_pred CCEEEEECccHHHHHHHHHHHHcC--CCcCeEEEEEccCCCcCccccccchhHHHHHH--HHHhhc--cccc-cccccHH
Confidence 478999999999999999999998 5 799999 87 32 111122100 000000 0000 0123677
Q ss_pred hhcCCCcEEEEccch--hcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 195 TALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 195 ea~~~aDiVilaVp~--~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
++++++|++|-+++. ..... +..+.+.++.+|+++.|
T Consensus 259 e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDLyn 297 (439)
T 2dvm_A 259 EALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPLAN 297 (439)
T ss_dssp HHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEECCS
T ss_pred HHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEECCC
Confidence 888999999999997 33221 12234567788999966
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.085 Score=52.25 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=57.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEe-C-CHHHHHHHHhhcC-CCccCCC-----CCC--C-CceEEe--CCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM-R-DPAVCQSINEKHC-NCRYFPE-----QKL--P-ENVIAT--TDA 193 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~-r-~~~~~~~l~~~g~-~~~~~~~-----~~l--~-~~i~a~--~~~ 193 (460)
|+||||+|+|++|..+.+.|.++. +.+|+.++ + +.+....+.+... ..++... ..+ . ..+.+. .++
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~~-~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp 79 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKNP-DIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP 79 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTCT-TEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEEECCCHHHHHHHHHHhCCC-CeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence 469999999999999999998763 25665443 3 3434433332110 0001000 011 1 123443 255
Q ss_pred Hhh-cC--CCcEEEEccchhcHHHHHHHhhhcCCCCC--eEEEec
Q 012596 194 KTA-LL--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS 233 (460)
Q Consensus 194 ~ea-~~--~aDiVilaVp~~~~~~vl~~i~~~l~~~~--iIV~~~ 233 (460)
++. .. ++|+||.|+|.....+...... +.|. +||+..
T Consensus 80 ~~i~w~~~~vDvV~~atg~~~s~e~a~~~l---~~Gak~vVId~p 121 (334)
T 3cmc_O 80 ENLAWGEIGVDIVVESTGRFTKREDAAKHL---EAGAKKVIISAP 121 (334)
T ss_dssp GGCCTGGGTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred hhcCcccCccCEEEECCCchhhHHHHHHHH---HCCCCEEEEeCC
Confidence 543 12 7999999999776555444332 2344 677654
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.018 Score=54.55 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=48.0
Q ss_pred eEEEECc-chHHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 129 KVVVLGG-GSFGTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~--G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||.|.|+ |.+|..++..|.+. | ++|++++|+++..+.+...+.... ..+. .-.++..++++++|+||.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~D~------~d~~~~~~~~~~~d~vi~ 71 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA--SQIVAIVRNPAKAQALAAQGITVR-QADY------GDEAALTSALQGVEKLLL 71 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG--GGEEEEESCTTTCHHHHHTTCEEE-ECCT------TCHHHHHHHTTTCSEEEE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC--ceEEEEEcChHhhhhhhcCCCeEE-EcCC------CCHHHHHHHHhCCCEEEE
Confidence 5889997 99999999999998 8 999999998766555543322100 0010 001234566788999998
Q ss_pred ccc
Q 012596 206 AMP 208 (460)
Q Consensus 206 aVp 208 (460)
+..
T Consensus 72 ~a~ 74 (286)
T 2zcu_A 72 ISS 74 (286)
T ss_dssp CC-
T ss_pred eCC
Confidence 764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.17 Score=47.58 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=36.7
Q ss_pred CCCeEEEECc-c-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-G-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+++.|.|+ | .+|..++..|++.| ++|++.+|+.+..+.+.+
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~ 65 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEG--ADVVISDYHERRLGETRD 65 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCC--CEEEEecCCHHHHHHHHH
Confidence 3578999998 8 59999999999999 999999999887665544
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.012 Score=58.91 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=32.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+||+|.|.|+ |.+|..++..|++.| ++|++++|++.
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~ 64 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG--HYVIASDWKKN 64 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEECCCc
Confidence 3689999997 999999999999999 99999999864
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.037 Score=54.37 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=32.6
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+++|+|.|.|+ |.+|..++..|++.| ++|++++|+.
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~ 61 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDNFA 61 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 35689999998 999999999999999 9999999864
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.26 Score=49.68 Aligned_cols=99 Identities=20% Similarity=0.144 Sum_probs=62.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccC-CCCCCCCceEEeCCHHhhc--CCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYF-PEQKLPENVIATTDAKTAL--LGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~-~~~~l~~~i~a~~~~~ea~--~~aDi 202 (460)
..+|.|+|+|.+|...+..+...| . .|++.++++++.+.+++.|...... .+.. ......+.. .++|+
T Consensus 214 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~------~~~~i~~~t~g~g~D~ 285 (404)
T 3ip1_A 214 GDNVVILGGGPIGLAAVAILKHAG--ASKVILSEPSEVRRNLAKELGADHVIDPTKEN------FVEAVLDYTNGLGAKL 285 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHTCSEEECTTTSC------HHHHHHHHTTTCCCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHcCCCEEEcCCCCC------HHHHHHHHhCCCCCCE
Confidence 468999999999998888777777 6 8999999999888887777431100 0000 000111211 25899
Q ss_pred EEEccchh--cHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQ--FSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||-++... ....+++.+...++++..++.+.
T Consensus 286 vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 286 FLEATGVPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp EEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred EEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 99999865 33444443323336666666553
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.056 Score=56.39 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=49.5
Q ss_pred ccCCCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+.+++||.|||.|..|.+ +|..|.+.| ++|+++|.... ..+.+.+.|.... .-.+++. +.++|
T Consensus 19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~~~D~~~~~~~~~l~~~gi~~~------------~g~~~~~-~~~~d 83 (494)
T 4hv4_A 19 MRRVRHIHFVGIGGAGMGGIAEVLANEG--YQISGSDLAPNSVTQHLTALGAQIY------------FHHRPEN-VLDAS 83 (494)
T ss_dssp ---CCEEEEETTTSTTHHHHHHHHHHTT--CEEEEECSSCCHHHHHHHHTTCEEE------------SSCCGGG-GTTCS
T ss_pred hccCCEEEEEEEcHhhHHHHHHHHHhCC--CeEEEEECCCCHHHHHHHHCCCEEE------------CCCCHHH-cCCCC
Confidence 445689999999999985 899999999 99999997643 4566766664211 1123333 57899
Q ss_pred EEEEc--cch
Q 012596 202 YCLHA--MPV 209 (460)
Q Consensus 202 iVila--Vp~ 209 (460)
+||++ +|.
T Consensus 84 ~vV~Spgi~~ 93 (494)
T 4hv4_A 84 VVVVSTAISA 93 (494)
T ss_dssp EEEECTTSCT
T ss_pred EEEECCCCCC
Confidence 99985 553
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.041 Score=48.53 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+|.|||+|..|..+|..|++.| .+|+++++.+
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g--~~v~lie~~~ 34 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAG--LKVLVLDGGR 34 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 58999999999999999999999 8999999875
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.039 Score=55.62 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=31.6
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDP 162 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~-V~v~~r~~ 162 (460)
||..++|.|||+|..|.++|..|++.| .+ |+++++.+
T Consensus 1 M~~~~dVvIVGaG~aGl~~A~~L~~~G--~~~v~v~E~~~ 38 (410)
T 3c96_A 1 MSEPIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSS 38 (410)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCC
Confidence 344579999999999999999999999 88 99999864
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.13 Score=48.78 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=36.6
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
++.+++.|.|+ |.+|.++|..|++.| ++|++.+|+.+.++.+.+
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~ 46 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAG--AKILLGARRQARIEAIAT 46 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 34567888885 789999999999999 999999999887766544
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.23 Score=52.39 Aligned_cols=43 Identities=5% Similarity=0.189 Sum_probs=40.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
.++|.|+|+|.+|..++..|.+.| ++|++++.+++.++.+.+.
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~--~~vvvid~~~~~~~~~~~~ 169 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRN--HLFVVVTDNYDQALHLEEQ 169 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTT--CCEEEEESCHHHHHHHHHS
T ss_pred CCeEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHh
Confidence 578999999999999999999988 8999999999999888876
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.34 Score=47.73 Aligned_cols=99 Identities=9% Similarity=0.065 Sum_probs=60.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a 200 (460)
...+|.|+|+|.+|...+..+...| .+|++.++++++.+.+++.|....+.... ... ......+.. ...
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~--~~~~i~~~~~~~~g~g~ 241 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGADVTLVVDP--AKE--EESSIIERIRSAIGDLP 241 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEECCT--TTS--CHHHHHHHHHHHSSSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCCCEEEcCcc--ccc--HHHHHHHHhccccCCCC
Confidence 3578999999999998888887778 78999999998888877766421100000 000 000111211 358
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+||-++.... .++...+.++++..++.+.
T Consensus 242 D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 242 NVTIDCSGNEK---CITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred CEEEECCCCHH---HHHHHHHHHhcCCEEEEEe
Confidence 99999987642 2233334455666666553
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.026 Score=55.24 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=45.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.|+|.|.|+ |.+|..++..|++.| ++|++++|++.. .+. .++. ..+.-.++..++++++|+||
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~------~~~--~~~~-----~Dl~d~~~~~~~~~~~d~vi 82 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG------TGG--EEVV-----GSLEDGQALSDAIMGVSAVL 82 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS------SCC--SEEE-----SCTTCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC------CCc--cEEe-----cCcCCHHHHHHHHhCCCEEE
Confidence 4689999997 999999999999999 999999998642 111 1100 00100123456678999999
Q ss_pred Eccc
Q 012596 205 HAMP 208 (460)
Q Consensus 205 laVp 208 (460)
.+..
T Consensus 83 h~A~ 86 (347)
T 4id9_A 83 HLGA 86 (347)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 8753
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.046 Score=54.92 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=32.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.++|.|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~E~~~ 56 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSG--IDCDVYEAVK 56 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence 3579999999999999999999999 8999999875
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.15 Score=49.53 Aligned_cols=97 Identities=19% Similarity=0.244 Sum_probs=61.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhh-cCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTA-LLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea-~~~aDi 202 (460)
..++|..||+|..|.+ +..+++ .| ..|+.+|.+++.++..++..... + + .++.+ ..|..+. -..+|+
T Consensus 122 ~g~rVLDIGcG~G~~t-a~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~----g--l-~~v~~v~gDa~~l~d~~FDv 191 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLT-GILLSHVYG--MRVNVVEIEPDIAELSRKVIEGL----G--V-DGVNVITGDETVIDGLEFDV 191 (298)
T ss_dssp TTCEEEEECCCSSCHH-HHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHH----T--C-CSEEEEESCGGGGGGCCCSE
T ss_pred CcCEEEEECCCccHHH-HHHHHHccC--CEEEEEECCHHHHHHHHHHHHhc----C--C-CCeEEEECchhhCCCCCcCE
Confidence 4589999999985432 222343 35 79999999998776655431100 0 0 12332 2233332 246899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
|+++.-......+++++...+++|..++..
T Consensus 192 V~~~a~~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 192 LMVAALAEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp EEECTTCSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred EEECCCccCHHHHHHHHHHHcCCCcEEEEE
Confidence 998755556678899999999998776543
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.23 Score=49.98 Aligned_cols=94 Identities=11% Similarity=0.171 Sum_probs=57.3
Q ss_pred CCeEEEEC-cchHHHHHHH-HHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLG-GGSFGTAMAA-HVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~-~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
.+|||||| .|..|.-|.+ .|.++.+ ..++.++..+. .|.....+.+..+ .+...+++++ +.++|+|
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~--------aG~~~~~~~~~~~--~v~~~~~~~~-~~~vDvv 72 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN--------AGGKAPSFAKNET--TLKDATSIDD-LKKCDVI 72 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC--------TTSBCCTTCCSCC--BCEETTCHHH-HHTCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh--------cCCCHHHcCCCce--EEEeCCChhH-hcCCCEE
Confidence 47999999 6999999999 6665531 13555554321 1221111222111 1232234444 5789999
Q ss_pred EEccchhcHHHHHHHhhhcCCCC--CeEEEecc
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~--~iIV~~~~ 234 (460)
|+|+|.....++...+.+ .| .+||+++.
T Consensus 73 f~a~~~~~s~~~~~~~~~---~G~k~~VID~ss 102 (377)
T 3uw3_A 73 ITCQGGDYTNDVFPKLRA---AGWNGYWIDAAS 102 (377)
T ss_dssp EECSCHHHHHHHHHHHHH---TTCCSEEEECSS
T ss_pred EECCChHHHHHHHHHHHH---CCCCEEEEeCCc
Confidence 999998877776665543 35 48899875
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.049 Score=54.78 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.|+|+|||+|..|...|..|++.| ++|++++++.
T Consensus 2 ~~~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~ 36 (384)
T 2bi7_A 2 KSKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRD 36 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEEecC
Confidence 3479999999999999999999998 9999999875
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.051 Score=54.52 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|||+|..|.++|..|++.| .+|+++++.+
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~ 59 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNG--IDVSVYERDN 59 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT--CEEEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence 468999999999999999999999 8999999865
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.047 Score=54.07 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.+.|..|+++| ++|+++++..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~G--~~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKRG--EEVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 468999999999999999999999 8999999863
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.065 Score=51.58 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=32.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.++|.|||+|.+|..-+..|.+.| ++|++++.+.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~G--a~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCC
Confidence 3589999999999999999999999 9999998754
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.055 Score=52.09 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=29.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.|+|.|.|+ |.+|..++..|++.| ++|++++|++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~ 37 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN--WHAVGCGFRRA 37 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEC----
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC--CeEEEEccCCC
Confidence 478999997 999999999999999 99999998754
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.037 Score=54.18 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=30.8
Q ss_pred CCeEEEECcchHHHHHHHHHHh---cCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN---KKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~---~G~~~~V~v~~r~~ 162 (460)
|++|+|||+|..|.+.|..|++ +| ++|+++++.+
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G--~~V~v~Ek~~ 37 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGP--LYLAVWDKAD 37 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CC--EEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCC--ceEEEEECCC
Confidence 3689999999999999999999 88 8999999763
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.67 Score=45.66 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=59.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-----CHHhhc--
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-----DAKTAL-- 197 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-----~~~ea~-- 197 (460)
...+|.|+|+|.+|...+..+...| . +|++.++++++.+.+++.|.... .... +..+.+
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~v-----------i~~~~~~~~~~~~~i~~ 237 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGADLV-----------LQISKESPQEIARKVEG 237 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCSEE-----------EECSSCCHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCCEE-----------EcCcccccchHHHHHHH
Confidence 3578999999999998888777777 6 89999999988887777664210 0011 111111
Q ss_pred ---CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 198 ---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 198 ---~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
..+|+||-++.... .++...+.++++..++.+.
T Consensus 238 ~~~~g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 238 QLGCKPEVTIECTGAEA---SIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp HHTSCCSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred HhCCCCCEEEECCCChH---HHHHHHHHhcCCCEEEEEe
Confidence 36899999987542 2233334455666666553
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.045 Score=56.72 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=30.2
Q ss_pred cceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 110 RWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+|++.+-.....+.| +..+|.|||+|.-|...|..|++.| ++|+++++.
T Consensus 9 ~~~~~~~~n~~~~~m-~~~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~ 57 (491)
T 3urh_A 9 SGVDLGTENLYFQSM-MAYDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKR 57 (491)
T ss_dssp ------------------CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred cccccCcCCcchhhc-ccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence 344444433333333 2367999999999999999999999 899999975
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.045 Score=56.50 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|++|.|||+|.-|..-|..|+++| ++|+++.++.
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~ 34 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRD 34 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC-
T ss_pred CCCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCC
Confidence 578999999999999999999999 9999998865
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.13 Score=46.05 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=38.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH 172 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g 172 (460)
..++|.|+| +|.+|.+++..+...| .+|++.++++++.+.+++.|
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~~g 83 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRLG 83 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTTC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcC
Confidence 357899999 6999999999999888 89999999988777665544
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.046 Score=54.57 Aligned_cols=34 Identities=41% Similarity=0.602 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.+.|..|+++| .+|+++++..
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~G--~~V~vlE~~~ 37 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAERG--HRVLVLERHT 37 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 468999999999999999999999 8999999864
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.029 Score=58.73 Aligned_cols=63 Identities=24% Similarity=0.213 Sum_probs=45.7
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+|||.|.| .|.+|+.++..|.+.| ++|++++|+....+ .. . .+ + .+...++++++|+||.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G--~~V~~l~R~~~~~~-----~v--~--~d--~------~~~~~~~l~~~D~Vih 207 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG--HEVIQLVRKEPKPG-----KR--F--WD--P------LNPASDLLDGADVLVH 207 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESSSCCTT-----CE--E--CC--T------TSCCTTTTTTCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCCcc-----ce--e--ec--c------cchhHHhcCCCCEEEE
Confidence 78999999 6999999999999999 99999999864211 00 0 00 0 1123456788999998
Q ss_pred ccc
Q 012596 206 AMP 208 (460)
Q Consensus 206 aVp 208 (460)
+..
T Consensus 208 ~A~ 210 (516)
T 3oh8_A 208 LAG 210 (516)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.29 Score=45.96 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=35.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+.+++.|.| .|.+|.+++..|++.| ++|++.+|+.+..+.+.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~ 48 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCK 48 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH
Confidence 446788998 5899999999999999 99999999987665443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.15 Score=50.19 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=60.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------C
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------L 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------~ 198 (460)
...+|.|+|+|.+|...+..+...| . +|++.++++++.+.+++.|..... +.. ..+..+.+ .
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~G--a~~Vi~~~~~~~~~~~~~~~Ga~~~~--~~~-------~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASG--AYPVIVSEPSDFRRELAKKVGADYVI--NPF-------EEDVVKEVMDITDGN 235 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEECSCHHHHHHHHHHTCSEEE--CTT-------TSCHHHHHHHHTTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCCEEE--CCC-------CcCHHHHHHHHcCCC
Confidence 4578999999999999999888888 7 899999999888877776642110 000 01222211 2
Q ss_pred CCcEEEEccch-hcHHHHHHHhhhcCCCCCeEEEec
Q 012596 199 GADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 199 ~aDiVilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+|+||-++.. ..+...++ .++++..++.+.
T Consensus 236 g~D~vid~~g~~~~~~~~~~----~l~~~G~iv~~g 267 (348)
T 2d8a_A 236 GVDVFLEFSGAPKALEQGLQ----AVTPAGRVSLLG 267 (348)
T ss_dssp CEEEEEECSCCHHHHHHHHH----HEEEEEEEEECC
T ss_pred CCCEEEECCCCHHHHHHHHH----HHhcCCEEEEEc
Confidence 58999999875 33444443 334444555543
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.071 Score=54.75 Aligned_cols=86 Identities=15% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-------------------HHHHHHHhh--cCCCccCCCCCC--
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------------------AVCQSINEK--HCNCRYFPEQKL-- 183 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-------------------~~~~~l~~~--g~~~~~~~~~~l-- 183 (460)
..||.|||+|.+|+.++..|+++|. -+++++|.+. .+++.+.+. ..+ |+..+
T Consensus 40 ~~~VlvvG~GGlGs~va~~La~aGv-g~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~ln----p~v~v~~ 114 (434)
T 1tt5_B 40 TCKVLVIGAGGLGCELLKNLALSGF-RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV----PNCNVVP 114 (434)
T ss_dssp TCCEEEECSSTHHHHHHHHHHHTTC-CCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHS----TTCCCEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCC-CEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhC----CCCEEEE
Confidence 5799999999999999999999996 3799997543 122222211 001 11111
Q ss_pred -CCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHh
Q 012596 184 -PENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 184 -~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i 219 (460)
+..+ .....+.++++|+||.|+-....+..++..
T Consensus 115 ~~~~i--~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~ 149 (434)
T 1tt5_B 115 HFNKI--QDFNDTFYRQFHIIVCGLDSIIARRWINGM 149 (434)
T ss_dssp EESCG--GGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred Eeccc--chhhHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 0001 111135678899999998877666555544
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.12 Score=54.33 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
.+++.|+|+|.+|.+++..|++.| .+|++++|+.++++.+.+.
T Consensus 364 ~k~vlV~GaGGig~aia~~L~~~G--~~V~i~~R~~~~a~~la~~ 406 (523)
T 2o7s_A 364 SKTVVVIGAGGAGKALAYGAKEKG--AKVVIANRTYERALELAEA 406 (523)
T ss_dssp --CEEEECCSHHHHHHHHHHHHHC--C-CEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999 7899999999888877654
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.058 Score=54.98 Aligned_cols=33 Identities=12% Similarity=0.347 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
++|.|||+|..|...|..|+++| ++|+++++.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G--~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHD--VDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTT--CEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 68999999999999999999999 9999999765
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.14 Score=53.11 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=48.0
Q ss_pred ccCCCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|.+.+||.|||.|..|.+ +|..|.+.| ++|+++|.... ..+.+.+.|... ..-.+.+ .+.++|
T Consensus 15 ~~~~~~i~viG~G~sG~s~~A~~l~~~G--~~V~~~D~~~~~~~~~l~~~gi~~------------~~g~~~~-~~~~a~ 79 (475)
T 1p3d_A 15 MRRVQQIHFIGIGGAGMSGIAEILLNEG--YQISGSDIADGVVTQRLAQAGAKI------------YIGHAEE-HIEGAS 79 (475)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHT--CEEEEEESCCSHHHHHHHHTTCEE------------EESCCGG-GGTTCS
T ss_pred cccCCEEEEEeecHHHHHHHHHHHHhCC--CEEEEECCCCCHHHHHHHhCCCEE------------ECCCCHH-HcCCCC
Confidence 334679999999999997 999999999 99999998643 345565555321 1112332 356889
Q ss_pred EEEEc
Q 012596 202 YCLHA 206 (460)
Q Consensus 202 iVila 206 (460)
+||+.
T Consensus 80 ~vv~s 84 (475)
T 1p3d_A 80 VVVVS 84 (475)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98885
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.43 Score=44.46 Aligned_cols=121 Identities=11% Similarity=0.159 Sum_probs=71.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.||..|+|+ |.||..++....+.+ +++. .+++... ++ +.++|++|
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~--~elv~~id~~~~---------------------------~~----l~~~DVvI 58 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKG--HELVLKVDVNGV---------------------------EE----LDSPDVVI 58 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEETTEE---------------------------EE----CSCCSEEE
T ss_pred cceeEEEEecCHHHHHHHHHHhCCC--CEEEEEEcCCCc---------------------------cc----ccCCCEEE
Confidence 589999998 999999988766666 6755 4454320 11 24689999
Q ss_pred -EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 205 -HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 205 -laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
++.|.. +.+.++...+ .+..+|..++|+..+.. +.+.+. .. ...++..|++..-+..
T Consensus 59 DFT~P~a-~~~~~~~~~~---~g~~~ViGTTG~~~~~~----~~l~~~-a~---~~~vv~apNfSlGvnl---------- 116 (228)
T 1vm6_A 59 DFSSPEA-LPKTVDLCKK---YRAGLVLGTTALKEEHL----QMLREL-SK---EVPVVQAYNFSIGINV---------- 116 (228)
T ss_dssp ECSCGGG-HHHHHHHHHH---HTCEEEECCCSCCHHHH----HHHHHH-TT---TSEEEECSCCCHHHHH----------
T ss_pred ECCCHHH-HHHHHHHHHH---cCCCEEEeCCCCCHHHH----HHHHHH-Hh---hCCEEEeccccHHHHH----------
Confidence 666653 3333333222 36778888889887532 223332 11 1467888887652210
Q ss_pred CCHHHHHHHHHHHhcCCceEEE
Q 012596 284 KDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
-....+.+.++|. ++.++.
T Consensus 117 -l~~l~~~aA~~l~--~ydiEI 135 (228)
T 1vm6_A 117 -LKRFLSELVKVLE--DWDVEI 135 (228)
T ss_dssp -HHHHHHHHHHHTT--TSEEEE
T ss_pred -HHHHHHHHHHhcC--CCCEEE
Confidence 0244566777774 445443
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.013 Score=58.73 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=26.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc--CCCCeEE-EEeC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANK--KSQLKVY-MLMR 160 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~--G~~~~V~-v~~r 160 (460)
+++||+|||+|.||..++..|.+. |.+.+|+ ++++
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~ 40 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA 40 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 457999999999999999999885 2123554 4454
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.07 Score=53.47 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|||+|..|.++|..|++.| .+|+++++.+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~ 38 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSP 38 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence 479999999999999999999999 8999999764
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.063 Score=54.13 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|+|.|||+|..|.+.|..|+++| ++|+++++++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNG--HEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 68999999999999999999999 9999999864
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.06 Score=53.26 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=31.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.+.|..|+++| ++|+++++..
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~G--~~V~vie~~~ 36 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFD 36 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCC
Confidence 468999999999999999999999 8999999763
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.48 Score=47.01 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=58.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a 200 (460)
..+|.|+|+|.+|...+..+...| . .|++.++++++.+.+++.|..... . ... ...+..+.+ ..+
T Consensus 192 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi-~---~~~---~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 192 GSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVGTHKDKFPKAIELGATECL-N---PKD---YDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHTTCSEEE-C---GGG---CSSCHHHHHHHHTTSCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHHcCCcEEE-e---ccc---ccchHHHHHHHHhCCCC
Confidence 478999999999998888777777 6 799999999888877776642110 0 000 001222222 258
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCC-CeEEEe
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPG-LPFISL 232 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~-~iIV~~ 232 (460)
|+||-++.... .++...+.++++ ..++.+
T Consensus 263 Dvvid~~g~~~---~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 263 DYAVECAGRIE---TMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SEEEECSCCHH---HHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCHH---HHHHHHHHHhcCCCEEEEE
Confidence 99999987532 223333445555 555554
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.064 Score=51.95 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=31.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
++++|.|||+|.-|...|..|++.| ++|+++++.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~ 38 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRG--LSFRFVDPLP 38 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence 3578999999999999999999998 8999999864
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.057 Score=54.21 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+|.|||+|..|...|..|++.| .+|+++++.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G--~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSG--FKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence 68999999999999999999999 8999999864
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.28 Score=48.70 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=39.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~ 173 (460)
..+|.|+|+|.+|.+.+..+...| .+|++.++++++.+.+++.|.
T Consensus 190 g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa 234 (363)
T 3uog_A 190 GDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFALGA 234 (363)
T ss_dssp TCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHHcCC
Confidence 478999999999999888888888 899999999988888777664
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.073 Score=52.90 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|||+|..|..+|..|++.| .+|+++++.+
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G--~~v~viE~~~ 44 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNG--WDVRLHEKSS 44 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEecCC
Confidence 479999999999999999999999 8999999864
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.05 Score=52.90 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=32.1
Q ss_pred CeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHH
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVC 165 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~~r~~~~~ 165 (460)
|||.|.|+ |.+|..++..|.+. | ++|++++|+.+..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~ 38 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH--YEVYGLDIGSDAI 38 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT--CEEEEEESCCGGG
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC--CEEEEEeCCcchH
Confidence 68999997 99999999999998 7 8999999987543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.57 Score=46.51 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=58.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a 200 (460)
..+|.|+|+|.+|...+..+...| . .|+..++++++.+.+++.|..... . ... ...+..+.+ ..+
T Consensus 196 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi-~---~~~---~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 196 GSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKALGATDCL-N---PRE---LDKPVQDVITELTAGGV 266 (376)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTCSEEE-C---GGG---CSSCHHHHHHHHHTSCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHhCCcEEE-c---ccc---ccchHHHHHHHHhCCCc
Confidence 468999999999998888777777 6 799999999888877776642110 0 000 001222222 258
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCC-CeEEEe
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPG-LPFISL 232 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~-~iIV~~ 232 (460)
|+||-++.... .++...+.++++ ..++.+
T Consensus 267 Dvvid~~G~~~---~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 267 DYSLDCAGTAQ---TLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SEEEESSCCHH---HHHHHHHTBCTTTCEEEEC
T ss_pred cEEEECCCCHH---HHHHHHHHhhcCCCEEEEE
Confidence 99999887532 223333445555 555554
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.09 E-value=0.3 Score=47.93 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=59.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh----cCCCc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA----LLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea----~~~aD 201 (460)
...+|.|+|+|.+|...+..+...| .+|++.++++++.+.+++.|.... + + .. ..+..+. ...+|
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~-~-d--~~-----~~~~~~~~~~~~~~~d 232 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKELGADLV-V-N--PL-----KEDAAKFMKEKVGGVH 232 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTCSEE-E-C--TT-----TSCHHHHHHHHHSSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHCCCCEE-e-c--CC-----CccHHHHHHHHhCCCC
Confidence 3579999999999999999888888 899999999988887776554210 0 0 00 0122211 14689
Q ss_pred EEEEccch-hcHHHHHHHhhhcCCCCCeEEEe
Q 012596 202 YCLHAMPV-QFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 202 iVilaVp~-~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+||-++.. ..+...++ .++++..++.+
T Consensus 233 ~vid~~g~~~~~~~~~~----~l~~~G~~v~~ 260 (339)
T 1rjw_A 233 AAVVTAVSKPAFQSAYN----SIRRGGACVLV 260 (339)
T ss_dssp EEEESSCCHHHHHHHHH----HEEEEEEEEEC
T ss_pred EEEECCCCHHHHHHHHH----HhhcCCEEEEe
Confidence 99998875 33333333 33444455544
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.78 Score=39.59 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=59.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc----CCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL----LGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~----~~aDi 202 (460)
..+|.-||+|. | .++..+++...+.+|+.+|.+++.++..++.-.. ..++.++....+..+.+ ...|+
T Consensus 26 ~~~vldiG~G~-G-~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~D~ 97 (178)
T 3hm2_A 26 HETLWDIGGGS-G-SIAIEWLRSTPQTTAVCFEISEERRERILSNAIN------LGVSDRIAVQQGAPRAFDDVPDNPDV 97 (178)
T ss_dssp TEEEEEESTTT-T-HHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHT------TTCTTSEEEECCTTGGGGGCCSCCSE
T ss_pred CCeEEEeCCCC-C-HHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHH------hCCCCCEEEecchHhhhhccCCCCCE
Confidence 46899999997 4 4555666551127899999999877666543110 00111222222321222 56899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
|++.-.... ..+++++...++++..++..
T Consensus 98 i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~ 126 (178)
T 3hm2_A 98 IFIGGGLTA-PGVFAAAWKRLPVGGRLVAN 126 (178)
T ss_dssp EEECC-TTC-TTHHHHHHHTCCTTCEEEEE
T ss_pred EEECCcccH-HHHHHHHHHhcCCCCEEEEE
Confidence 998766554 66788888888888776543
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.13 Score=49.97 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
||+|.|.| .|.+|..++..|++.| ++|++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~ 34 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQG--IDLIVFDNL 34 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCC--CEEEEEeCC
Confidence 47899999 6999999999999999 999999874
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.26 Score=51.84 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|.+|+.++..|+.+|. ..++++|.+.
T Consensus 32 ~~~VlvvG~GGlGseiak~La~aGV-g~itlvD~D~ 66 (531)
T 1tt5_A 32 SAHVCLINATATGTEILKNLVLPGI-GSFTIIDGNQ 66 (531)
T ss_dssp HCEEEEECCSHHHHHHHHHHHTTTC-SEEEEECCCB
T ss_pred cCeEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 4799999999999999999999996 4799999765
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.99 E-value=0.62 Score=46.22 Aligned_cols=93 Identities=9% Similarity=0.035 Sum_probs=58.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a 200 (460)
..+|.|+|+|.+|...+..+...| . .|++.++++++.+.+++.|..... . ... ...+..+.+ ..+
T Consensus 192 g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi-~---~~~---~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 192 GSTCAVFGLGGVGLSVIMGCKAAG--AARIIGVDINKDKFAKAKEVGATECV-N---PQD---YKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTCSEEE-C---GGG---CSSCHHHHHHHHTTSCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHhCCceEe-c---ccc---cchhHHHHHHHHhCCCC
Confidence 478999999999999888887777 6 799999999888877766642110 0 000 001222211 258
Q ss_pred cEEEEccchh-cHHHHHHHhhhcCCCC-CeEEEe
Q 012596 201 DYCLHAMPVQ-FSSSFLEGISDYVDPG-LPFISL 232 (460)
Q Consensus 201 DiVilaVp~~-~~~~vl~~i~~~l~~~-~iIV~~ 232 (460)
|+||-++... .+... .+.++++ ..++.+
T Consensus 263 D~vid~~g~~~~~~~~----~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 263 DFSFEVIGRLDTMVTA----LSCCQEAYGVSVIV 292 (374)
T ss_dssp SEEEECSCCHHHHHHH----HHHBCTTTCEEEEC
T ss_pred cEEEECCCCHHHHHHH----HHHhhcCCcEEEEe
Confidence 9999998753 33333 3444555 555554
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.081 Score=53.14 Aligned_cols=33 Identities=33% Similarity=0.377 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|+|.|||+|..|.+.|..|+++| ++|++++++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAG--HEVEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CceEEEeCCC
Confidence 68999999999999999999999 9999999864
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.056 Score=53.19 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=30.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
-.|.|||+|..|.+.|..|+++| ++|++++|.+
T Consensus 5 yDViIVGaGpaGl~~A~~La~~G--~~V~v~Er~~ 37 (397)
T 3oz2_A 5 YDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRP 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 35999999999999999999999 9999999864
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.59 Score=43.58 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=36.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+++.|.|+ |.+|.++|..|++.| ++|++.+|+.+..+++.+
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~ 54 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYG--ATVILLGRNEEKLRQVAS 54 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 4567888885 789999999999999 899999999887665543
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.099 Score=56.12 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|.+|+.++..|++.|. -.++++|.+.
T Consensus 17 ~s~VlVVGaGGLGsevak~La~aGV-G~ItlvD~D~ 51 (640)
T 1y8q_B 17 GGRVLVVGAGGIGCELLKNLVLTGF-SHIDLIDLDT 51 (640)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEECCB
T ss_pred cCeEEEECcCHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 4799999999999999999999996 3799999764
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.85 E-value=0.65 Score=43.59 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=34.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
.++|.|.| .|.+|.+++..|++.| ++|++.+|+++..+.+.
T Consensus 13 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~ 54 (267)
T 1iy8_A 13 DRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASK 54 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 46788887 6899999999999999 99999999987665544
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.79 Score=44.11 Aligned_cols=95 Identities=8% Similarity=0.012 Sum_probs=61.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVi 204 (460)
..+|.-||+|. |. ++..|++. | .+|+.+|.+++.++..++.... ..+..++.+ ..|..+.-...|+|+
T Consensus 91 ~~~vLDiGcG~-G~-~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~~~~fD~v~ 160 (318)
T 2fk8_A 91 GMTLLDIGCGW-GT-TMRRAVERFD--VNVIGLTLSKNQHARCEQVLAS------IDTNRSRQVLLQGWEDFAEPVDRIV 160 (318)
T ss_dssp TCEEEEESCTT-SH-HHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHT------SCCSSCEEEEESCGGGCCCCCSEEE
T ss_pred cCEEEEEcccc-hH-HHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh------cCCCCceEEEECChHHCCCCcCEEE
Confidence 47899999998 43 44555554 7 7999999999877666553110 001112322 234444335689999
Q ss_pred Ec-----cchhcHHHHHHHhhhcCCCCCeEEE
Q 012596 205 HA-----MPVQFSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 205 la-----Vp~~~~~~vl~~i~~~l~~~~iIV~ 231 (460)
.. ++......+++++...+++|..++.
T Consensus 161 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 161 SIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp EESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred EeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 87 4445567788999999998776544
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.64 Score=46.04 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=59.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a 200 (460)
..+|.|+|+|.+|...+..+...| . .|+..++++++.+.+++.|..... . ... ...+..+.+ ..+
T Consensus 191 g~~VlV~GaG~vG~~avqla~~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi-~---~~~---~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 191 GSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKEFGATECI-N---PQD---FSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHHTCSEEE-C---GGG---CSSCHHHHHHHHTTSCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHcCCceEe-c---ccc---ccccHHHHHHHHhCCCC
Confidence 468999999999999888887778 6 799999999888877776642110 0 000 001222222 258
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCC-CeEEEe
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPG-LPFISL 232 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~-~iIV~~ 232 (460)
|+||-++.... .++...+.++++ ..++.+
T Consensus 262 D~vid~~g~~~---~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 262 DYSFECIGNVK---VMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SEEEECSCCHH---HHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCcHH---HHHHHHHhhccCCcEEEEE
Confidence 99999987532 223334445555 555554
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.23 Score=48.63 Aligned_cols=92 Identities=20% Similarity=0.070 Sum_probs=59.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc----CCCc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL----LGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~----~~aD 201 (460)
...+|.|+|+|.+|...+..+...| .+|+..++++++.+.+++.|........ ..+..+.+ ...|
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~i~~~---------~~~~~~~~~~~~g~~d 234 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARRLGAEVAVNAR---------DTDPAAWLQKEIGGAH 234 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEETT---------TSCHHHHHHHHHSSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCCEEEeCC---------CcCHHHHHHHhCCCCC
Confidence 3578999999999999888888888 8999999999988888776642110000 01222222 3678
Q ss_pred EEEEccchh-cHHHHHHHhhhcCCCCCeEEEe
Q 012596 202 YCLHAMPVQ-FSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 202 iVilaVp~~-~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+||.++... .+...+ +.++++..++.+
T Consensus 235 ~vid~~g~~~~~~~~~----~~l~~~G~iv~~ 262 (340)
T 3s2e_A 235 GVLVTAVSPKAFSQAI----GMVRRGGTIALN 262 (340)
T ss_dssp EEEESSCCHHHHHHHH----HHEEEEEEEEEC
T ss_pred EEEEeCCCHHHHHHHH----HHhccCCEEEEe
Confidence 998887643 233333 334444555544
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.069 Score=52.81 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=54.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEEE
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVi 204 (460)
|||+|+| .|.+|..+.+.|.+.++. .++..+.... ..|.... +.+ ..+.+.+ ++.+ . ++|+||
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~-------~~g~~l~-~~g----~~i~v~~~~~~~-~-~~DvV~ 66 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPR-------SAGVRLA-FRG----EEIPVEPLPEGP-L-PVDLVL 66 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGG-------GSSCEEE-ETT----EEEEEEECCSSC-C-CCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccc-------cCCCEEE-EcC----ceEEEEeCChhh-c-CCCEEE
Confidence 6899999 999999999999876621 2233322111 1121111 111 1122221 3333 4 899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
.|++.....+...... +.|..+|+++.-
T Consensus 67 ~a~g~~~s~~~a~~~~---~~G~~vId~s~~ 94 (331)
T 2yv3_A 67 ASAGGGISRAKALVWA---EGGALVVDNSSA 94 (331)
T ss_dssp ECSHHHHHHHHHHHHH---HTTCEEEECSSS
T ss_pred ECCCccchHHHHHHHH---HCCCEEEECCCc
Confidence 9999877666655543 357888988753
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.4 Score=44.55 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|.|+ |.+|..+|..|++.| ++|++++|+.+..+.+.+
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~ 51 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREG--AAVVVADINAEAAEAVAK 51 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence 467888895 899999999999999 999999999887766554
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.094 Score=53.10 Aligned_cols=34 Identities=29% Similarity=0.603 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~ 162 (460)
..+|.|||+|..|.+.|..|+++| + +|+++++..
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G--~~~V~vlE~~~ 40 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRG--YTNVTVLDPYP 40 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC--CCcEEEEeCCC
Confidence 458999999999999999999999 8 999999865
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.75 E-value=0.43 Score=47.41 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=58.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a 200 (460)
..+|.|+|+|.+|...+..+...| . .|+..++++++.+.+++.|..... + ... ...+..+.+ ..+
T Consensus 193 g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi--~--~~~---~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 193 GSTCAVFGLGAVGLAAVMGCHSAG--AKRIIAVDLNPDKFEKAKVFGATDFV--N--PND---HSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTCCEEE--C--GGG---CSSCHHHHHHHHHTSCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHhCCceEE--e--ccc---cchhHHHHHHHHhCCCC
Confidence 468999999999999888887777 6 799999999888877776642110 0 000 001222222 258
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCC-CeEEEe
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPG-LPFISL 232 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~-~iIV~~ 232 (460)
|+||-++.... .++...+.++++ ..++.+
T Consensus 264 D~vid~~g~~~---~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 264 DFSLECVGNVG---VMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SEEEECSCCHH---HHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCHH---HHHHHHHHhhcCCcEEEEE
Confidence 99999887532 223334445555 555554
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.085 Score=52.10 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.+|.|||+|..|...|..|+++| .+|+++++..
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G--~~V~llE~~~ 50 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGT 50 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCC
Confidence 468999999999999999999999 8999999863
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.041 Score=55.64 Aligned_cols=80 Identities=10% Similarity=0.114 Sum_probs=56.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~---~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..||.|||+ |..|..-+..+..-| . +|++||++.. ..|.. .++ +.++|+
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lG--a~~~~V~v~D~~~~------~~g~~------------------~~~-i~~aDi 266 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVG--IPDANILKWDIKET------SRGGP------------------FDE-IPQADI 266 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTT--CCGGGEEEECHHHH------TTCSC------------------CTH-HHHSSE
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCC--CCcCceEEeecccc------ccCCc------------------hhh-HhhCCE
Confidence 468999999 999999999999888 6 8999998762 11210 123 568999
Q ss_pred EEEccchhc-HHHH-HHHhhhcC-CCCCeEEEec
Q 012596 203 CLHAMPVQF-SSSF-LEGISDYV-DPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~-~~~v-l~~i~~~l-~~~~iIV~~~ 233 (460)
||-|+.... ...+ -++..+.+ +++.+||+++
T Consensus 267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence 999997421 1111 12333456 7899999986
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.71 E-value=0.5 Score=43.69 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=35.7
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|.| .|.+|..++..|++.| ++|++.+|+++..+.+.+
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~ 47 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKG--ATVVGTATSQASAEKFEN 47 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 46788888 4889999999999999 999999999887665544
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.47 Score=44.03 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=34.6
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
.++|.|.| .|.+|..++..|++.| ++|++.+|+.+..+.+.
T Consensus 13 ~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 54 (260)
T 3awd_A 13 NRVAIVTGGAQNIGLACVTALAEAG--ARVIIADLDEAMATKAV 54 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 46788888 5899999999999999 99999999987655443
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.082 Score=51.86 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~ 162 (460)
.++|.|||+|..|...|..|++.| + +|+++++++
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g--~~~v~lie~~~ 38 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFG--ITDVIILEKGT 38 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHcC--CCcEEEEecCC
Confidence 468999999999999999999998 8 899999875
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.48 Score=46.15 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=38.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH 172 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g 172 (460)
..+|.|.|+ |.+|.+++..+...| .+|++.++++++.+.+++.|
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~~g 190 (333)
T 1v3u_A 146 GETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQIG 190 (333)
T ss_dssp SCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTT
T ss_pred CCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhcC
Confidence 478999998 999999999999998 89999999988887775544
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=92.64 E-value=0.094 Score=51.90 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=29.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCC-eEEEEeC
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQL-KVYMLMR 160 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~-~V~v~~r 160 (460)
|||.|.| .|.+|..++..|.+.| + +|+..||
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g--~~~v~~~d~ 33 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTT--DHHIFEVHR 33 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHC--CCEEEECCT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CCEEEEECC
Confidence 6899999 6999999999999999 7 9999998
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.64 Score=42.85 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+++.|.|+ |.+|.+++..|++.| ++|++.+|+.+..+.+.+
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~ 56 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHG--ASVVLLGRTEASLAEVSD 56 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEecCHHHHHHHHH
Confidence 4578899995 899999999999999 899999999887765544
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.36 Score=44.63 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=35.6
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+.++|.|.|+ |.+|..++..|++.| ++|++.+|+.+..+.+.
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 52 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVV 52 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence 3578999985 899999999999999 99999999987665543
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.075 Score=51.51 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.+|.|||+|..|...|..|++.| ++|+++++.+
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~ 36 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSG--LSYVILDAEA 36 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSS--CCEEEECCSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCC
Confidence 468999999999999999999999 8999999875
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.35 Score=45.05 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=35.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~ 169 (460)
++++|.|.| .|.+|..++..|++ .| ++|++.+|+.+..+.+.
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g--~~V~~~~r~~~~~~~~~ 46 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAV 46 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS--SEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcC--CeEEEEeCChHHHHHHH
Confidence 457788888 58999999999999 89 89999999987665443
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.089 Score=52.40 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHhc--CCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~--G~~~~V~v~~r~~~ 163 (460)
|+|.|||+|..|.++|..|++. | .+|+++++.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G--~~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPL--WAIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTT--SEEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCC--CCEEEEECCCC
Confidence 5899999999999999999999 8 99999998753
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.23 Score=46.04 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=36.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++++.|.|+ |.+|.++|..|++.| ++|++.+|+.+..+++.+
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~ 45 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERG--HQVSMMGRRYQRLQQQEL 45 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 4567889995 789999999999999 999999999887766544
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.26 Score=48.45 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=58.5
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-----C
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-----G 199 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-----~ 199 (460)
...+|.|+|+ |.+|.+++..+...| .+|++.++++++.+.+++.|..... + +.. ..+..+.+. .
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~~~~~~~~g~~~~~--d--~~~----~~~~~~~~~~~~~~~ 238 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGKEELFRSIGGEVFI--D--FTK----EKDIVGAVLKATDGG 238 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTHHHHHHHTTCCEEE--E--TTT----CSCHHHHHHHHHTSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHHHHHHHHcCCceEE--e--cCc----cHhHHHHHHHHhCCC
Confidence 3578999999 999999999999888 8999999998877766665432100 0 000 012222221 5
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.|+||-++... ..++...+.++++..++.+
T Consensus 239 ~D~vi~~~g~~---~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 239 AHGVINVSVSE---AAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp EEEEEECSSCH---HHHHHHTTSEEEEEEEEEC
T ss_pred CCEEEECCCcH---HHHHHHHHHHhcCCEEEEE
Confidence 78888887642 2233344445555555554
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.11 Score=54.49 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=31.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHh---cCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVAN---KKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~---~G~~~~V~v~~r~~ 162 (460)
++.+|.|||+|..|.+.|..|++ .| .+|+++++..
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~ 41 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQ--ANITLIESAA 41 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSS--CEEEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCC--CEEEEECCCC
Confidence 45789999999999999999999 88 8999999853
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.50 E-value=0.25 Score=45.55 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=37.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASG--AKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3578999996 899999999999999 999999999877666554
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.11 Score=49.03 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=30.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.+|.|||+|.-|...|..|++.| ++|+++++.+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~ 35 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRAR--KNILLVDAGE 35 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence 368999999999999999999999 8999999753
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.076 Score=53.76 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=33.0
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+..+|.|||+|..|...|..|++.| .+|+++++.+.
T Consensus 2 M~~~dViIIGgG~aGl~aA~~la~~G--~~V~vlEk~~~ 38 (401)
T 2gqf_A 2 SQYSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKK 38 (401)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Confidence 34468999999999999999999999 89999998764
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.13 Score=50.89 Aligned_cols=91 Identities=12% Similarity=0.080 Sum_probs=59.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-C-CHHhhc-CCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-T-DAKTAL-LGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~-~~~ea~-~~aDi 202 (460)
...+|.|+|+|.+|...+..+...| .+|++.++++++.+.+++.|.... +... . +..+.+ ..+|+
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~lGa~~v----------~~~~~~~~~~~~~~~~~D~ 246 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKMGADHY----------IATLEEGDWGEKYFDTFDL 246 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTCSEE----------EEGGGTSCHHHHSCSCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHcCCCEE----------EcCcCchHHHHHhhcCCCE
Confidence 3578999999999999888888788 789999998888877777664210 0000 1 222223 46899
Q ss_pred EEEccch---hcHHHHHHHhhhcCCCCCeEEEe
Q 012596 203 CLHAMPV---QFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 203 VilaVp~---~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
||-++.. ..+.. ..+.++++..++.+
T Consensus 247 vid~~g~~~~~~~~~----~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 247 IVVCASSLTDIDFNI----MPKAMKVGGRIVSI 275 (360)
T ss_dssp EEECCSCSTTCCTTT----GGGGEEEEEEEEEC
T ss_pred EEECCCCCcHHHHHH----HHHHhcCCCEEEEe
Confidence 9999876 23332 33444455555544
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.17 Score=52.55 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=46.9
Q ss_pred CCCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+.+||.|||.|..|.+ +|..|.+.| ++|+++|.... ..+.+.+.|.... .-.+.+ .+.++|+|
T Consensus 18 ~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~~~D~~~~~~~~~l~~~gi~~~------------~g~~~~-~~~~a~~v 82 (491)
T 2f00_A 18 RVRHIHFVGIGGAGMGGIAEVLANEG--YQISGSDLAPNPVTQQLMNLGATIY------------FNHRPE-NVRDASVV 82 (491)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHTT--CEEEEECSSCCHHHHHHHHTTCEEE------------SSCCGG-GGTTCSEE
T ss_pred cCCEEEEEEcCHHHHHHHHHHHHhCC--CeEEEECCCCCHHHHHHHHCCCEEE------------CCCCHH-HcCCCCEE
Confidence 4578999999999997 999999999 99999997643 3455655553211 001232 35678998
Q ss_pred EEc
Q 012596 204 LHA 206 (460)
Q Consensus 204 ila 206 (460)
|+.
T Consensus 83 v~s 85 (491)
T 2f00_A 83 VVS 85 (491)
T ss_dssp EEC
T ss_pred EEC
Confidence 885
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.51 Score=46.94 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=59.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a 200 (460)
..+|.|+|+|.+|...+..+...| . .|++.++++++.+.+++.|...... ... ...+..+.+ ..+
T Consensus 194 g~~VlV~GaG~vG~~a~q~a~~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi~----~~~---~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 194 GSNVAIFGLGTVGLAVAEGAKTAG--ASRIIGIDIDSKKYETAKKFGVNEFVN----PKD---HDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHT--CSCEEEECSCTTHHHHHHTTTCCEEEC----GGG---CSSCHHHHHHHHTTSCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHcCCcEEEc----ccc---CchhHHHHHHHhcCCCC
Confidence 578999999999998888887778 6 7999999998888777766421100 000 001222221 258
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCC-CeEEEe
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPG-LPFISL 232 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~-~iIV~~ 232 (460)
|+||-++..... ++.....++++ ..++.+
T Consensus 265 D~vid~~g~~~~---~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 265 DYSFECIGNVSV---MRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SEEEECSCCHHH---HHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCHHH---HHHHHHHhhccCCEEEEE
Confidence 999999886322 23333445553 555554
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.1 Score=52.47 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=30.9
Q ss_pred CCeEEEECcchHHHHHHHHHHh---cCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN---KKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~---~G~~~~V~v~~r~~ 162 (460)
|++|.|||+|..|...|..|++ .| ++|+++++++
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g--~~V~vie~~~ 37 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSK--ADVKVINKSR 37 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGG--SEEEEEESSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEeCCC
Confidence 4689999999999999999999 77 8999999876
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.09 Score=53.58 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
...+|.|||+|..|...|..|++.| .+|+++++.+.
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G--~~V~llEk~~~ 61 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRG--RRVLVIDHARA 61 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 3468999999999999999999999 89999998865
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.1 Score=53.34 Aligned_cols=34 Identities=35% Similarity=0.483 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~--~V~v~~r~~ 162 (460)
+++|+|||+|..|.+.|..|+++| + +|+++.++.
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G--~~~~V~vlEa~~ 37 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAP--CPPKVVLVESSE 37 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSS--SCCEEEEECSSS
T ss_pred CceEEEECCcHHHHHHHHHHHhCC--CCCcEEEEeCCC
Confidence 479999999999999999999999 8 999998754
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.12 Score=52.82 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~--~V~v~~r~~ 162 (460)
..++|+|||+|..|.+.|..|++.| . +|+++++..
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G--~~~~V~v~E~~~ 41 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEK--AFDQVTLFERRG 41 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--CCSEEEEECSSS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcC--CCCCeEEEecCC
Confidence 3579999999999999999999999 7 999999874
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.28 Score=47.67 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=56.4
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.||| ...+|.++|..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 178 ~Gk~vvViGRS~iVGkPla~LL~~~~--ATVTi~Hs~T----------------------------~dl~~~~~~ADIvV 227 (303)
T 4b4u_A 178 AGKHAVVVGRSAILGKPMAMMLLQAN--ATVTICHSRT----------------------------QNLPELVKQADIIV 227 (303)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SSHHHHHHTCSEEE
T ss_pred CCCEEEEEeccccccchHHHHHHhcC--CEEEEecCCC----------------------------CCHHHHhhcCCeEE
Confidence 468999999 5567999999999988 8999875432 26777788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++..... + -.+++++|+++|++.
T Consensus 228 ~A~G~p~~---i--~~d~vk~GavVIDVG 251 (303)
T 4b4u_A 228 GAVGKAEL---I--QKDWIKQGAVVVDAG 251 (303)
T ss_dssp ECSCSTTC---B--CGGGSCTTCEEEECC
T ss_pred eccCCCCc---c--ccccccCCCEEEEec
Confidence 99874432 0 135688999999973
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.08 Score=51.02 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
++++|.|||+|.-|...|..|++.| ++|+++++.+
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~vie~~~ 55 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAE--IKPILYEGMM 55 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCC
Confidence 3579999999999999999999999 8999999843
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=1.1 Score=44.99 Aligned_cols=123 Identities=18% Similarity=0.216 Sum_probs=62.6
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEE--EeCCHHHHHHHHhh-cCCCccCCCC--------CCC-CceEE-
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYM--LMRDPAVCQSINEK-HCNCRYFPEQ--------KLP-ENVIA- 189 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v--~~r~~~~~~~l~~~-g~~~~~~~~~--------~l~-~~i~a- 189 (460)
|+.|+||+|+|+ |.||+.....+.++...++|+. .+++.+.+.+..++ +.......+. .++ ....+
T Consensus 1 m~~m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~ 80 (388)
T 1r0k_A 1 MSQPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAA 80 (388)
T ss_dssp -CCCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEE
T ss_pred CCCceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEE
Confidence 334578999999 9999999999988641245553 46676655444332 2210000000 000 00111
Q ss_pred --eCCHHhhcC-CCcEEEEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 190 --TTDAKTALL-GADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 190 --~~~~~ea~~-~aDiVilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
.+++.+++. ++|+|+.+++. ..+...+..| +.|+.|+...|......+..+.+..++
T Consensus 81 ~g~~~~~el~~~~iDvVV~ai~G~aGl~ptlaAi----~aGK~VvlANKE~lv~~G~~l~~~A~~ 141 (388)
T 1r0k_A 81 AGADALVEAAMMGADWTMAAIIGCAGLKATLAAI----RKGKTVALANKESLVSAGGLMIDAVRE 141 (388)
T ss_dssp ESHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHH----HTTSEEEECCSHHHHTTHHHHHHHHHH
T ss_pred eCccHHHHHHcCCCCEEEEeCCCHHHHHHHHHHH----HCCCEEEEeCcHHHHhhHHHHHHHHHH
Confidence 122223332 27999999864 3344443333 346777766554333223334444443
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.52 Score=46.51 Aligned_cols=101 Identities=18% Similarity=0.169 Sum_probs=58.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhh----cCCCc--cCCCCCC---CCceEEe--CCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEK----HCNCR--YFPEQKL---PENVIAT--TDAK 194 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r--~~~~~~~l~~~----g~~~~--~~~~~~l---~~~i~a~--~~~~ 194 (460)
+||||+|+|++|..+.+.|.++. .+|..++- +.+....+-+. |.-.. ...+..+ ...+.+. .+++
T Consensus 1 ikVgInG~G~IGr~vlr~l~~~~--~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 78 (331)
T 2g82_O 1 MKVGINGFGRIGRQVFRILHSRG--VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK 78 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChh
Confidence 48999999999999999998775 78876553 44444444332 21000 0001111 1234443 2555
Q ss_pred hhc-C--CCcEEEEccchhcHHHHHHHhhhcCCCCC--eEEEec
Q 012596 195 TAL-L--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS 233 (460)
Q Consensus 195 ea~-~--~aDiVilaVp~~~~~~vl~~i~~~l~~~~--iIV~~~ 233 (460)
+.- . ++|+||.|++.....+...... +.|. +||+..
T Consensus 79 ~l~w~~~gvDiV~estG~~~s~e~a~~~l---~aGakkvVIsap 119 (331)
T 2g82_O 79 EIPWAEAGVGVVIESTGVFTDADKAKAHL---EGGAKKVIITAP 119 (331)
T ss_dssp GSCTTTTTEEEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred hCcccccCCCEEEECCCchhhHHHHHHHH---HCCCCEEEECCC
Confidence 431 2 6899999999776555443332 2344 666654
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.08 Score=52.07 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=30.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+|.|||+|..|.+.|..|+++| .+|+++++..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G--~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAG--LNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 58999999999999999999999 8999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 460 | ||||
| d1n1ea1 | 160 | a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydro | 2e-45 | |
| d1n1ea2 | 189 | c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen | 3e-38 | |
| d1txga1 | 155 | a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydro | 4e-38 | |
| d1txga2 | 180 | c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen | 1e-26 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 1e-16 | |
| d1vjta1 | 193 | c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM07 | 2e-16 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 3e-11 | |
| d1ks9a2 | 167 | c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc | 5e-07 |
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 160 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 153 bits (387), Expect = 2e-45
Identities = 62/152 (40%), Positives = 95/152 (62%)
Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
D G E+A A+KNVLAI +G+ G+ +G N+ AAL+ +G EIR L +G + + GL
Sbjct: 2 DTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGL 61
Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
+G GD+ LTC LSRN TVG +LG G +++I + VAEGV+TA ++ LA++ VK
Sbjct: 62 AGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVK 121
Query: 428 MPVLTAVARIIDNELTPKKAVLELMSLPQVEE 459
MP+ + I+ + P+ A+ +L+S +E
Sbjct: 122 MPLCHQIYEIVYKKKNPRDALADLLSCGLQDE 153
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 135 bits (340), Expect = 3e-38
Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 11/186 (5%)
Query: 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV 187
NK VV G G+FGTA+A ++ K + V + + + +NEK N + +L N+
Sbjct: 8 NKAVVFGSGAFGTALAMVLSKKCRE--VCVWHMNEEEVRLVNEKRENVLFLKGVQLASNI 65
Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYV-----DPGLPFISLSKGLELNTLR 242
T+D + A GA+ L +P QF F E + + +P + +KG+E +TL+
Sbjct: 66 TFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLK 125
Query: 243 MMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLAS--KH 300
++II + L +P L+GPSFA+E+ + T + +AS D +A +Q+++++ +
Sbjct: 126 FPAEIIGEFLPSPL--LSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRS 183
Query: 301 LRISTS 306
+
Sbjct: 184 FVCWAT 189
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 155 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 134 bits (337), Expect = 4e-38
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNN-----SMAALVAQGCSEIRWLATKMGAKPA 362
D+ G EI ALKNV +IA + G N + + + +E+ L +G
Sbjct: 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRE 60
Query: 363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMN----QVAEGVSTAGAVI 418
T GLSG GD++ T RN +G LG G +D+ + + V EG TA
Sbjct: 61 TAFGLSGFGDLIATFRGG--RNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAY 118
Query: 419 ALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMS 453
L+ K N +L ++ R++ L ++ + EL +
Sbjct: 119 RLSSKINADTKLLDSIYRVLYEGLKVEEVLFELAT 153
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 103 bits (257), Expect = 1e-26
Identities = 27/180 (15%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
V +LG G+ G+A++ + + ++++++ D + +SI+ + R + +
Sbjct: 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVK-LNGVEIF 60
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT-LRMMSQI 247
+ L A+ L + + I Y+ + ++ + + + +
Sbjct: 61 WPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEA 120
Query: 248 IPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
+ + + R+ +A++GP+ A E+ ++PT +V +S AN ++++ +++ + ++
Sbjct: 121 VWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 75.7 bits (185), Expect = 1e-16
Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 17/184 (9%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPE 185
+ VLG G+ G A AA++A K V D + I ++
Sbjct: 1 SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAH 58
Query: 186 NVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS 245
+ T+D A+ AD L +P +S I+ Y+ G I L+ G L
Sbjct: 59 PDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEG-QLIILNPGATGGALEFRK 117
Query: 246 QIIPQALRNPRQPFIALSGPSFALELM-----------NKLPTAMVVASKDRKLANAVQQ 294
+ P S F + A + A+K +
Sbjct: 118 ILR--ENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGS 175
Query: 295 LLAS 298
+L
Sbjct: 176 VLPQ 179
|
| >d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Putative alpha-glucosidase TM0752 species: Thermotoga maritima [TaxId: 2336]
Score = 75.6 bits (185), Expect = 2e-16
Identities = 29/200 (14%), Positives = 68/200 (34%), Gaps = 21/200 (10%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC-QSINEKHCN------CRYFPEQ 181
K+ ++G GS A+ ++ + D + ++E+ N +Y E
Sbjct: 4 KISIIGAGSVRFALQLVGDIAQT---EELSREDTHIYMMDVHERRLNASYILARKYVEEL 60
Query: 182 KLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL 241
P ++ T+ A+ GAD+ ++ G + + + G
Sbjct: 61 NSPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEV--TKVGEKHGYYRGID 118
Query: 242 RMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHL 301
++ A ++ P A ++ + AN V ++ ++ +
Sbjct: 119 SQELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQT-----ANPVFEI--TQAV 171
Query: 302 RISTSSDVTGV--EIAGALK 319
R T +++ G +AG +
Sbjct: 172 RRWTGANIVGFCHGVAGVYE 191
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.8 bits (146), Expect = 3e-11
Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 9/212 (4%)
Query: 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV 187
+V +LGG G+ G +A +A ++ + R ++ ++ +N
Sbjct: 2 RVALLGGTGNLGKGLALRLA--TLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNE 59
Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI 247
+A + HA+ + V P +P +KG ++ R ++I
Sbjct: 60 D-AAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEI 118
Query: 248 IPQAL--RNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST 305
+ + L + FA V D + + LR
Sbjct: 119 VAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRP-- 176
Query: 306 SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN 337
D + + ++++ + I+ +G
Sbjct: 177 -LDAGPLSNSRLVESLTPLILNIMRFNGMGEL 207
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Score = 47.2 bits (111), Expect = 5e-07
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
K+ VLG G+ G + K +V +R P S+N + F E
Sbjct: 2 KITVLGCGALGQLWLTALC--KQGHEVQGWLRVPQPYCSVNLVETDGSIFNE-------S 52
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237
T + L +D L + S ++ ++ + P + + G+
Sbjct: 53 LTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMG 101
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 460 | |||
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.96 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 99.93 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.9 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 99.9 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.81 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.77 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.76 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.7 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.68 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.67 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.63 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.62 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.62 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.59 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.58 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.57 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.54 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.52 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.5 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.27 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.14 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.14 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.13 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.07 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.05 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.03 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.99 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.97 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.96 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.93 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.9 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.85 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.83 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.8 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.64 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.55 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.42 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.42 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.4 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.39 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.37 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.35 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.34 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.33 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.3 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.26 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.26 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.26 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.22 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.21 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.2 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.19 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.13 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.11 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.11 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.11 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.09 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.08 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.0 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.99 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.98 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.98 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.98 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.96 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.92 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.91 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.9 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.87 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.85 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.83 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.71 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.64 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.61 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.61 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.54 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.52 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.48 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.48 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.45 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.44 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.44 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.4 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.4 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.36 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.33 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.2 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.18 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.16 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.15 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.11 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.09 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.08 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.07 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.98 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.9 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.88 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.88 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.88 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.87 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.83 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.81 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 96.8 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.75 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.69 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.63 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.56 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.39 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.3 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 96.26 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.23 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.22 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.01 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.98 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.97 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.92 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.91 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.85 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.85 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 95.84 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.8 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.71 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.7 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.64 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.55 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.51 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.5 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.47 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.45 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.44 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.44 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.44 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.43 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.43 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.42 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.35 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.33 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.31 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.3 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.24 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.24 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.24 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.22 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.16 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 95.15 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 95.14 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.08 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.07 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.03 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.95 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.92 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.87 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.86 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.77 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.76 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.76 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.73 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.72 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.71 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.68 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.63 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 94.62 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.62 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.62 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.61 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.59 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 94.58 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.52 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.49 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.41 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 94.39 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.12 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.11 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.03 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.02 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 93.99 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.97 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.92 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 93.91 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.85 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.84 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 93.73 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.68 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 93.59 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 93.5 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.44 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 93.41 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.39 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 93.36 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 93.21 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.2 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.98 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 92.94 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.91 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 92.87 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.76 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.73 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.72 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.67 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.62 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.52 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.51 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 92.48 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.45 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 92.41 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.3 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.16 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.14 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.04 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 92.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 91.92 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 91.82 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 91.78 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.74 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 91.62 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.59 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 91.42 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 91.31 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.18 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.11 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.06 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 91.04 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 90.95 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 90.94 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 90.91 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 90.8 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 90.73 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 90.55 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 90.47 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 90.33 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.31 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 90.23 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 90.1 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.1 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 90.09 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.04 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 89.98 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 89.98 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.91 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.84 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 89.79 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 89.75 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 89.73 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 89.66 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 89.58 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.58 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.39 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.32 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.25 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 89.22 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 88.95 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.89 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 88.86 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 88.8 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 88.79 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.78 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 88.58 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 88.56 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 88.33 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 88.29 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 88.28 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 88.24 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.15 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 87.95 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 87.75 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 87.7 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.66 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 87.65 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 87.53 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 87.51 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 87.41 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 87.19 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 87.18 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 86.93 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 86.55 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 86.53 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 86.52 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 86.5 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 86.39 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 86.05 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 86.02 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 85.55 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 85.55 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 85.51 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 85.2 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 84.95 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 84.93 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 84.91 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 84.9 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 84.4 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 84.17 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 84.0 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 83.93 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 83.76 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 83.69 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 83.49 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 83.41 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 83.38 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 83.26 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 83.15 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 83.12 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 83.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 82.62 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 82.56 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 82.42 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 82.3 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 82.12 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 82.08 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 82.06 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 81.66 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 81.57 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 81.24 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 81.17 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 80.89 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 80.65 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 80.57 |
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.96 E-value=1e-28 Score=226.89 Aligned_cols=179 Identities=30% Similarity=0.445 Sum_probs=163.2
Q ss_pred hccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
.|+.|+||+|||+|+||+++|..|+++| |+|++|+|+++.++.+++.+.+.+|+++..+|+++.++++++++++++|+
T Consensus 3 ~~~~m~KI~ViGaG~wGtAlA~~La~~g--~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~ 80 (189)
T d1n1ea2 3 ELLYLNKAVVFGSGAFGTALAMVLSKKC--REVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEI 80 (189)
T ss_dssp CCCCEEEEEEECCSHHHHHHHHHHHTTE--EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSC
T ss_pred ccceeceEEEECCCHHHHHHHHHHHHcC--CeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCE
Confidence 3556789999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEEccchhcHHHHHHHhhhc-----CCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCe
Q 012596 203 CLHAMPVQFSSSFLEGISDY-----VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPT 277 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~-----l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~ 277 (460)
||++||++.++++++++.++ ++++.++|++++|+++++...+++.+.+.++. ..+++++||+++.|+.+|.++
T Consensus 81 iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~--~~~~vlsGP~~A~Ev~~~~pt 158 (189)
T d1n1ea2 81 ILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFT 158 (189)
T ss_dssp EEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCE
T ss_pred EEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcc--cceEEEecCCcHHHHHcCCCc
Confidence 99999999999999988753 45678899999999999888999999988765 357899999999999999999
Q ss_pred EEEEccCCHHHHHHHHHHHhc--CCceEEE
Q 012596 278 AMVVASKDRKLANAVQQLLAS--KHLRIST 305 (460)
Q Consensus 278 ~i~i~~~d~~~~~~l~~lL~~--~g~~v~~ 305 (460)
.+++++.+.+..+.++++|+. ..|+++.
T Consensus 159 ~~viAs~~~~~a~~i~~lfst~~~~frvy~ 188 (189)
T d1n1ea2 159 CVSIASADINVARRLQRIMSTGDRSFVCWA 188 (189)
T ss_dssp EEEEECSSHHHHHHHHHHHSCTTSSEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHhCCCCCCEEEec
Confidence 999999999999999999985 3588775
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.93 E-value=1.9e-26 Score=205.78 Aligned_cols=153 Identities=41% Similarity=0.653 Sum_probs=149.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccch
Q 012596 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRT 386 (460)
Q Consensus 307 ~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~ 386 (460)
.|+.|+|+++++||++|+++|+.++++++.|...+++..+++||..+++++|.+++++++++|+||+++||++..+||++
T Consensus 1 tD~~GvE~~galKNi~Aia~Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~ 80 (160)
T d1n1ea1 1 TDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFT 80 (160)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHHHHHHHhcCCCccC
Q 012596 387 VGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLPQVEE 459 (460)
Q Consensus 387 ~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~~~~ 459 (460)
+|..+++|.+.+++.+.+++++||...+..++++++++++++|+.+++|+++.++.+|+++++.|++||.+.|
T Consensus 81 ~G~~l~~g~~~~e~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~~~~~p~~~i~~Lm~r~~k~E 153 (160)
T d1n1ea1 81 VGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLSCGLQDE 153 (160)
T ss_dssp HHHHHHHTCCHHHHHHSCCSCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHSCCCHHHHHHHHTTSCSCBC
T ss_pred HHHHHhccccHHHHHHhccchHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHhCcCCHHHHHHHHHCCCCCCC
Confidence 9999999999999988889999999999999999999999999999999999999999999999999999988
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=2.2e-23 Score=189.50 Aligned_cols=175 Identities=18% Similarity=0.267 Sum_probs=144.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r--~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|+||+++|..|+++| ++|++|.| +++.++.+++.+.+..+ +....+..+.+++|.+++++++|+||+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g--~~V~l~~r~~~~~~~~~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ad~Ii~ 77 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGTEFDTEILKSISAGREHPRL-GVKLNGVEIFWPEQLEKCLENAEVVLL 77 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC--CEEEEECCGGGHHHHHHHHTTCCBTTT-TBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEEecccHHHHHHHhhhhhhhhh-cchhccccccccccHHHHHhccchhhc
Confidence 89999999999999999999999 99999998 45568888877655443 222234456678899999999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchh--hhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL--RMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~--~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
+||++.++++++++.+++++ ..+|.+++|+..... ..+.+.+.+..+.....+++++||+++.|+..+.++.+++++
T Consensus 78 avps~~~~~~~~~l~~~l~~-~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias 156 (180)
T d1txga2 78 GVSTDGVLPVMSRILPYLKD-QYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSS 156 (180)
T ss_dssp CSCGGGHHHHHHHHTTTCCS-CEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred ccchhhhHHHHHhhcccccc-ceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEc
Confidence 99999999999999999865 577778888754422 346777776655433457899999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEc
Q 012596 284 KDRKLANAVQQLLASKHLRISTS 306 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~ 306 (460)
.+.+..+.++++|+...|+++.+
T Consensus 157 ~~~~~a~~i~~~f~~~~frvy~S 179 (180)
T d1txga2 157 PSESSANKMKEIFETEYFGVEVT 179 (180)
T ss_dssp SCHHHHHHHHHHHCBTTEEEEEE
T ss_pred CCHHHHHHHHHHHCCCCEEEEeC
Confidence 99999999999999999999875
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=5.7e-24 Score=188.33 Aligned_cols=146 Identities=30% Similarity=0.460 Sum_probs=137.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCC
Q 012596 308 DVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLS 382 (460)
Q Consensus 308 Di~g~~~~kalkNv~ai~~g~~~~~kl~-----~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~s 382 (460)
|+.|+|+++++||++|+++|+.++++++ .|...+++.++++||..+++++|.+++++++++|+||+++||++ +
T Consensus 1 DviGvEi~galKNi~Aia~Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~--s 78 (155)
T d1txga1 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG--G 78 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC--H
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCC--C
Confidence 7899999999999999999999998765 59999999999999999999999999999999999999999987 9
Q ss_pred ccchHHHHhhCCCChHHHHhhcc----cceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 012596 383 RNRTVGVRLGSGEKLDDILSSMN----QVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLP 455 (460)
Q Consensus 383 rn~~~g~~l~~g~~~e~~~~~~~----~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~~ 455 (460)
||+++|..+++|++.+++.+.++ .++||...++.++++++++++++|+.+.+|+++.++.+|+++++.|++|.
T Consensus 79 RN~~~G~~l~~G~~~~e~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~~~~~~~~~i~~L~~Rk 155 (155)
T d1txga1 79 RNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLYEGLKVEEVLFELATFK 155 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCCCHHHHHHHHHTTC
T ss_pred CccHHHHHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhCcCCHHHHHHHHHcCC
Confidence 99999999999999888776653 48999999999999999999999999999999999999999999999873
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=6.9e-20 Score=163.00 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=120.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||||||+|.||.+||.+|+++| ++|++|||++++++.+.+.+. ....++.++++++|+||+||
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~~--------------~~~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAG--YSLVVSDRNPEAIADVIAAGA--------------ETASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEehhHHHHHHHHHHHHCC--CeEEEEeCCcchhHHHHHhhh--------------hhcccHHHHHhCCCeEEEEc
Confidence 79999999999999999999999 999999999999999887652 45678999999999999999
Q ss_pred ch-hcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 208 PV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 208 p~-~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
|. .++++++ +.+.+.+++++++|++++ ..+++.+.+.+.+.+. .+.++.+|..............++.+
T Consensus 65 ~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT-~~p~~~~~~~~~~~~~------g~~~vdapv~gg~~~a~~g~l~~~~g 137 (161)
T d1vpda2 65 PNSPHVKEVALGENGIIEGAKPGTVLIDMSS-IAPLASREISDALKAK------GVEMLDAPVSGGEPKAIDGTLSVMVG 137 (161)
T ss_dssp SSHHHHHHHHHSTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHTT------TCEEEECCEESHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHhCCcchhhccCCCCEEEECCC-CCHHHHHHHHHHHHHc------CCceecccccCChhHHhcCCeEEEEc
Confidence 85 5678887 457888899999999987 6666555555555442 24566666665433221222335556
Q ss_pred CCHHHHHHHHHHHhcCCceEEE
Q 012596 284 KDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
++.+.+++++++|+..+-++++
T Consensus 138 G~~~~~~~~~~il~~~~~~i~~ 159 (161)
T d1vpda2 138 GDKAIFDKYYDLMKAMAGSVVH 159 (161)
T ss_dssp SCHHHHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCceEE
Confidence 6899999999999988777654
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.77 E-value=1.7e-18 Score=154.00 Aligned_cols=156 Identities=13% Similarity=0.168 Sum_probs=118.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|+||||||+|.||++||++|.++| ++|.+|||++++.+.+.+.+. ....++.+++..+|+|++|
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g--~~v~~~d~~~~~~~~~~~~~~--------------~~~~~~~e~~~~~diii~~ 64 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLVQSAVDGLVAAGA--------------SAARSARDAVQGADVVISM 64 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHTTC--------------EECSSHHHHHTSCSEEEEC
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCC--CeEEEEECchhhhhhhhhhhc--------------cccchhhhhccccCeeeec
Confidence 579999999999999999999999 999999999999988887652 3456788999999999999
Q ss_pred cchh-cHHHHHHH---hhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MPVQ-FSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp~~-~~~~vl~~---i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
||.. ..++++.. +.+.+.++++||++++ ..+++...+.+.+.+. |..+..+.+..||..+. .|. ..++.
T Consensus 65 v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st-~~p~~~~~~~~~~~~~-gi~~~dapv~Gg~~~a~---~G~--l~~~~ 137 (162)
T d3cuma2 65 LPASQHVEGLYLDDDGLLAHIAPGTLVLECST-IAPTSARKIHAAARER-GLAMLDAPVSGGTAGAA---AGT--LTFMV 137 (162)
T ss_dssp CSCHHHHHHHHHSTTCHHHHSCTTCEEEECSC-CCHHHHHHHHHHHHHT-TCEEEECCEESCHHHHH---HTC--EEEEE
T ss_pred ccchhhHHHHHhccccccccCCCCCEEEECCC-CCHHHHHHHHHHHHHC-CCcEEecccccCccccc---cCC--eEEEe
Confidence 9965 46667653 6777889999999987 6676666666666654 33222333344443322 343 34555
Q ss_pred cCCHHHHHHHHHHHhcCCceEEE
Q 012596 283 SKDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
+++.+.+++++++|+..+.++++
T Consensus 138 gG~~~~~~~~~~il~~~~~~v~~ 160 (162)
T d3cuma2 138 GGDAEALEKARPLFEAMGRNIFH 160 (162)
T ss_dssp ESCHHHHHHHHHHHHHHEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCccEE
Confidence 67899999999999988776654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.76 E-value=1.8e-18 Score=153.98 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=113.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.||+.||+.|.++| ++|++|||+++.++++.+.+.. -...++. ++++++|+||+||
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~~~~~~a~~~~~~------------~~~~~~~-~~~~~~DiIilav 65 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVERQLV------------DEAGQDL-SLLQTAKIIFLCT 65 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTSC------------SEEESCG-GGGTTCSEEEECS
T ss_pred CEEEEEeecHHHHHHHHHHHHCC--CEEEEEECCchHHHHHHHhhcc------------ceeeeec-ccccccccccccC
Confidence 79999999999999999999999 9999999999988888876531 0233444 5689999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECccc-----HH-HHhccCCeEEE-
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF-----AL-ELMNKLPTAMV- 280 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~-----a~-e~~~g~~~~i~- 280 (460)
|...++++++++.+.++++++|+++++ ..... ...+.+.... ......+.||.. +. ++..+.+..++
T Consensus 66 p~~~~~~vl~~l~~~l~~~~iv~~~~s-~~~~~----~~~~~~~~~~-~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~ 139 (165)
T d2f1ka2 66 PIQLILPTLEKLIPHLSPTAIVTDVAS-VKTAI----AEPASQLWSG-FIGGHPMAGTAAQGIDGAEENLFVNAPYVLTP 139 (165)
T ss_dssp CHHHHHHHHHHHGGGSCTTCEEEECCS-CCHHH----HHHHHHHSTT-CEEEEECCCCSCSSGGGCCTTTTTTCEEEEEE
T ss_pred cHhhhhhhhhhhhhhcccccceeeccc-cchHH----HHHHHHhhcc-cccceeeecccccchhhhcccccCCCeEEEEe
Confidence 999999999999999999999998864 33221 1223332221 222334444433 22 12233333222
Q ss_pred EccCCHHHHHHHHHHHhcCCceEEE
Q 012596 281 VASKDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 281 i~~~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
..+.+.+.++.++++|+..|.+++.
T Consensus 140 ~~~~~~~~~~~v~~l~~~lG~~v~~ 164 (165)
T d2f1ka2 140 TEYTDPEQLACLRSVLEPLGVKIYL 164 (165)
T ss_dssp CTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCEEEe
Confidence 2357889999999999999999875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.70 E-value=8.4e-17 Score=141.49 Aligned_cols=148 Identities=15% Similarity=0.209 Sum_probs=111.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||||||+|+||++|+..|.++| ++|++|+|++++.+++.++ | +.++.+.+++++.+|+||+|
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~--~~i~v~~r~~~~~~~l~~~~g--------------~~~~~~~~~~~~~~dvIila 64 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTP--HELIISGSSLERSKEIAEQLA--------------LPYAMSHQDLIDQVDLVILG 64 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSS--CEEEEECSSHHHHHHHHHHHT--------------CCBCSSHHHHHHTCSEEEEC
T ss_pred CEEEEEeccHHHHHHHHHHHhCC--CeEEEEcChHHhHHhhccccc--------------eeeechhhhhhhccceeeee
Confidence 79999999999999999999998 9999999999998888654 3 23456888999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-CC
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-KD 285 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~-~d 285 (460)
||.+.+++++++ ++++++||++..|+..+ .+++.++.. .. .+...|+.+..+..+. +.+..+. .+
T Consensus 65 vkp~~~~~vl~~----l~~~~~iis~~agi~~~-------~l~~~l~~~-~~-ivr~mPN~~~~v~~g~-~~~~~~~~~~ 130 (152)
T d2ahra2 65 IKPQLFETVLKP----LHFKQPIISMAAGISLQ-------RLATFVGQD-LP-LLRIMPNMNAQILQSS-TALTGNALVS 130 (152)
T ss_dssp SCGGGHHHHHTT----SCCCSCEEECCTTCCHH-------HHHHHHCTT-SC-EEEEECCGGGGGTCEE-EEEEECTTCC
T ss_pred cchHhHHHHhhh----cccceeEecccccccHH-------HHHhhhccc-cc-chhhccchhhhcCccc-eEEEeCCCCC
Confidence 999888887655 45688999999998764 345555432 12 3556687776554432 2222222 25
Q ss_pred HHHHHHHHHHHhcCCceEEE
Q 012596 286 RKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~ 305 (460)
++..+.++++|+..|..++.
T Consensus 131 ~~~~~~v~~l~~~~G~~~~v 150 (152)
T d2ahra2 131 QELQARVRDLTDSFGSTFDI 150 (152)
T ss_dssp HHHHHHHHHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEe
Confidence 78899999999998865443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.68 E-value=2.2e-16 Score=138.57 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=111.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|+||.+|+..|.++| .++|++|+|++++.+++.+++ ++.+.++.++ +.++|+||+||
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~~~~~~l~~~~-------------~~~~~~~~~~-v~~~Div~lav 65 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGAEKRERLEKEL-------------GVETSATLPE-LHSDDVLILAV 65 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSHHHHHHHHHHT-------------CCEEESSCCC-CCTTSEEEECS
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCChhHHHHhhhhc-------------cccccccccc-ccccceEEEec
Confidence 79999999999999999998887 489999999999999988753 2345556655 67899999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-cCCH
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-SKDR 286 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~-~~d~ 286 (460)
|++++.++++++.+ .++++|++..|+..+ .+++.++.. ...+...|..+..+..|. +.+... ..+.
T Consensus 66 kP~~~~~v~~~l~~---~~~~viS~~ag~~~~-------~l~~~l~~~--~~iir~mpn~p~~~~~g~-t~~~~~~~~~~ 132 (152)
T d1yqga2 66 KPQDMEAACKNIRT---NGALVLSVAAGLSVG-------TLSRYLGGT--RRIVRVMPNTPGKIGLGV-SGMYAEAEVSE 132 (152)
T ss_dssp CHHHHHHHHTTCCC---TTCEEEECCTTCCHH-------HHHHHTTSC--CCEEEEECCGGGGGTCEE-EEEECCTTSCH
T ss_pred CHHHHHHhHHHHhh---cccEEeecccCCCHH-------HHHHHhCcC--cceEeecccchhHhcCCc-EEEEeCCCCCH
Confidence 99889888877753 478999999998764 356666542 124666777776655442 222222 2257
Q ss_pred HHHHHHHHHHhcCCceEE
Q 012596 287 KLANAVQQLLASKHLRIS 304 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v~ 304 (460)
+..+.++++|+..|..++
T Consensus 133 ~~~~~v~~l~~~~G~~~~ 150 (152)
T d1yqga2 133 TDRRIADRIMKSVGLTVW 150 (152)
T ss_dssp HHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhCCCEEE
Confidence 788999999999885544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.67 E-value=6.3e-17 Score=145.62 Aligned_cols=160 Identities=9% Similarity=0.056 Sum_probs=114.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
.+|||||+|+||.+||.+|.++| ++|++|||++++++.+.+++...... ......+++.+++..+|.+++++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~ii~~~ 74 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEAKGTKV------LGAHSLEEMVSKLKKPRRIILLV 74 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTTTTSSC------EECSSHHHHHHHBCSSCEEEECS
T ss_pred CcEEEEeEhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHhccccccc------cchhhhhhhhhhhcccceEEEec
Confidence 57999999999999999999999 99999999999999998875421100 01112235567788999999999
Q ss_pred ch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012596 208 PV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (460)
Q Consensus 208 p~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~ 286 (460)
+. ..+.++.+++.+.+++++++|++++ ..+++.+.+.+.+.+. +..+..+.+..||..+. .|. .+++ +++.
T Consensus 75 ~~~~~v~~v~~~l~~~~~~g~iiid~sT-~~~~~~~~~~~~~~~~-g~~~ldapvsGg~~~A~---~G~--~~~~-gG~~ 146 (176)
T d2pgda2 75 KAGQAVDNFIEKLVPLLDIGDIIIDGGN-SEYRDTMRRCRDLKDK-GILFVGSGVSGGEDGAR---YGP--SLMP-GGNK 146 (176)
T ss_dssp CTTHHHHHHHHHHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHT-TCEEEEEEEESHHHHHH---HCC--EEEE-EECT
T ss_pred CchHHHHHHHHHHHhccccCcEEEecCc-chhHHHHHHHHHHHhc-CCceeccccccCccccc---CCc--EEEc-CCCH
Confidence 96 5688899999999999999999987 5555555566666543 43223333333333222 343 3444 4577
Q ss_pred HHHHHHHHHHhcCCceE
Q 012596 287 KLANAVQQLLASKHLRI 303 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v 303 (460)
+.+++++++|+..+-++
T Consensus 147 ~~~~~~~~il~~~~~kv 163 (176)
T d2pgda2 147 EAWPHIKAIFQGIAAKV 163 (176)
T ss_dssp TTHHHHHHHHHHHSCBC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 88999999999766543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=2.1e-17 Score=146.25 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=103.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|+||+.+|..|+++| ++|++|+|++++.+.+...+.+.. ... ....+++ .+.+..+|+||++|
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~-----~~~-~~~~~~~-~~~~~~~D~iii~v 71 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQPYCSVNLVETDGS-----IFN-ESLTAND-PDFLATSDLLLVTL 71 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSEEEEEEECTTSC-----EEE-EEEEESC-HHHHHTCSEEEECS
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHHHhhhhccccCCcc-----ccc-cccccch-hhhhcccceEEEee
Confidence 89999999999999999999999 999999999864433222221111 111 1123334 45578999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc--CC
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS--KD 285 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~--~d 285 (460)
|+.+++++++.+.+++.+++.|++++||+.... .+.+.-...++.. ........|....+...| .+ .++. ..
T Consensus 72 ka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~--~l~~~~~~v~~g~-~~~~~~~~~~~i~~~~~g-~t--~ig~~~~~ 145 (167)
T d1ks9a2 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIE--ELQNIQQPLLMGT-TTHAARRDGNVIIHVANG-IT--HIGPARQQ 145 (167)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTG--GGTTCCSCEEEEE-ECCEEEEETTEEEEEECC-CE--EEEESSGG
T ss_pred cccchHHHHHhhccccCcccEEeeccCcccHHH--HHhhcCCcEEEEE-eeEeEEecCCEEEEeCCc-CE--EEeeCCCc
Confidence 999999999999999999999999999998752 1111100011100 011122223322222222 22 3432 23
Q ss_pred HHHHHHHHHHHhcCCceEEEc
Q 012596 286 RKLANAVQQLLASKHLRISTS 306 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~ 306 (460)
.+..+.+.++|+....++.+.
T Consensus 146 ~~~~~~l~~~l~~a~~~~~W~ 166 (167)
T d1ks9a2 146 DGDYSYLADILQTVLPDVAWH 166 (167)
T ss_dssp GTTCTHHHHHHHTTSSCEEEC
T ss_pred chhHHHHHHHHHhhCCCCccC
Confidence 345678899998776666543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.62 E-value=1.1e-15 Score=137.05 Aligned_cols=109 Identities=25% Similarity=0.219 Sum_probs=91.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aDiVila 206 (460)
+||+|||+|+||+++|..|+++| ++|++|+|++++++.+++.+....+.++... ......++++.|+++++|+||++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 79999999999999999999999 9999999999999999987765555444433 23345677899999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+|+.+++++++++++++.++++|+. ++|....
T Consensus 80 v~~~~~~~~~~~i~~~l~~~~~iv~-~~g~~~~ 111 (184)
T d1bg6a2 80 VPAIHHASIAANIASYISEGQLIIL-NPGATGG 111 (184)
T ss_dssp SCGGGHHHHHHHHGGGCCTTCEEEE-SSCCSSH
T ss_pred EchhHHHHHHHHhhhccCCCCEEEE-eCCCCcc
Confidence 9999999999999999999987774 4455443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.62 E-value=9.9e-16 Score=137.67 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=112.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH---hhcCCCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK---TALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~---ea~~~aDiVi 204 (460)
|||||||+|.||.+||++|+++| ++|.+|||++++++++.+.+...... .+.....+.+ ..+..++.++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G--~~V~~~dr~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 73 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKG--FKVAVFNRTYSKSEEFMKANASAPFA------GNLKAFETMEAFAASLKKPRKAL 73 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTTTSTTG------GGEEECSCHHHHHHHBCSSCEEE
T ss_pred CEEEEEeehHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHcCCccccc------cchhhhhhhhHHHHhcccceEEE
Confidence 79999999999999999999999 99999999999999998876532221 1233333333 3356778888
Q ss_pred Eccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 205 HAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 205 laVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
++++. ..+..++..+...+.++++++++++ ..+++.+.+.+.+.+. .+.++..|...........+.+ +.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~iii~~st-~~~~~~~~~~~~l~~~------~~~~ldapv~g~~~~a~~g~~~-mvg 145 (178)
T d1pgja2 74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGN-AHFKDQGRRAQQLEAA------GLRFLGMGISGGEEGARKGPAF-FPG 145 (178)
T ss_dssp ECCCCSHHHHHHHHHHHHHCCTTCEEEECCC-CCHHHHHHHHHHHHTT------TCEEEEEEEESHHHHHHHCCEE-EEE
T ss_pred EeecCcchhhhhhhhhhhhccccceecccCc-cchhHHHHHHHHHhhc------ceeEecccccCCcchhcCCcEE-Eee
Confidence 88775 5577888899999999999999987 4444444444444432 2345566655443221112234 445
Q ss_pred CCHHHHHHHHHHHhcCCceE
Q 012596 284 KDRKLANAVQQLLASKHLRI 303 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v 303 (460)
++++.+++++++|+..+-++
T Consensus 146 G~~~~~~~v~pil~~~~~~~ 165 (178)
T d1pgja2 146 GTLSVWEEIRPIVEAAAAKA 165 (178)
T ss_dssp ECHHHHHHHHHHHHHHSCBC
T ss_pred CCHHHHHHHHHHHHHHhccc
Confidence 68899999999999766554
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.59 E-value=1.7e-15 Score=132.80 Aligned_cols=149 Identities=10% Similarity=0.122 Sum_probs=100.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||||||+|.||++||.+|.++| ++|++|++++.........+.. +..++.|+++++|+||+||
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRG--VEVVTSLEGRSPSTIERARTVG--------------VTETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--CEEEECCTTCCHHHHHHHHHHT--------------CEECCHHHHHTSSEEEECS
T ss_pred CEEEEEcHHHHHHHHHHHHHHCC--CeEEEEcCchhHHHHHhhhccc--------------ccccHHHHHhhcCeEEEEe
Confidence 79999999999999999999999 9999999887766655554431 2346788899999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHH
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK 287 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~ 287 (460)
|.....+++.++.+.+ ++.+|++++ ..+++.+.+ .+.+... .++.+|..+.....+..+.++++|.+.+
T Consensus 65 ~~~~~~~~~~~~~~~~--~~~~id~st-~~p~~~~~l----~~~~~~~----~~~d~~v~g~~~~~~~~~~~~~~G~~~~ 133 (152)
T d1i36a2 65 TPGVALGAARRAGRHV--RGIYVDINN-ISPETVRMA----SSLIEKG----GFVDAAIMGSVRRKGADIRIIASGRDAE 133 (152)
T ss_dssp CGGGHHHHHHHHHTTC--CSEEEECSC-CCHHHHHHH----HHHCSSS----EEEEEEECSCHHHHGGGCEEEEESTTHH
T ss_pred cCchHHHHHHhhcccC--CceeeccCc-CCHHHHHHH----HHHHhcc----CCCcccccCCcccccCCcEEEEECCCHH
Confidence 9988888888777765 578888875 555543333 3333221 1333333322211222234556666665
Q ss_pred HHHHHHHHHhcCCceEEEcC
Q 012596 288 LANAVQQLLASKHLRISTSS 307 (460)
Q Consensus 288 ~~~~l~~lL~~~g~~v~~~~ 307 (460)
.+++ |+..|..+.+.+
T Consensus 134 ~~~~----l~~~g~~i~~~G 149 (152)
T d1i36a2 134 EFMK----LNRYGLNIEVRG 149 (152)
T ss_dssp HHHG----GGGGTCEEEECS
T ss_pred HHHH----HHHcCCeeeEcC
Confidence 5543 566677776543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.58 E-value=2.4e-14 Score=127.23 Aligned_cols=162 Identities=13% Similarity=0.119 Sum_probs=111.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVil 205 (460)
|+||+|||+|.||+.+|+.|.++|...+|+.||++++..+.+.+.+... ...++..+ ....+|+||+
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~dlIil 68 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID------------EGTTSIAKVEDFSPDFVML 68 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS------------EEESCGGGGGGTCCSEEEE
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch------------hhhhhhhhhhccccccccc
Confidence 4579999999999999999999985568999999999888888765321 22233333 3357999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcc-----cHH-HHhccCCeEE
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPS-----FAL-ELMNKLPTAM 279 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~-----~a~-e~~~g~~~~i 279 (460)
|+|...+.++++++.+++++++++++++..-.. +.+.+.+.++........+.|+. .+. .+..|....+
T Consensus 69 a~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~-----~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il 143 (171)
T d2g5ca2 69 SSPVRTFREIAKKLSYILSEDATVTDQGSVKGK-----LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVIL 143 (171)
T ss_dssp CSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTH-----HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEE
T ss_pred cCCchhhhhhhhhhhccccccccccccccccHH-----HHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEE
Confidence 999999999999999999999999998753221 12233333332222333444432 222 1233433222
Q ss_pred EEc-cCCHHHHHHHHHHHhcCCceEEE
Q 012596 280 VVA-SKDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 280 ~i~-~~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
+.. ..+.+.++.++++|+..|.++..
T Consensus 144 ~p~~~~~~~~~~~v~~~~~~lG~~v~~ 170 (171)
T d2g5ca2 144 TPTKKTDKKRLKLVKRVWEDVGGVVEY 170 (171)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 111 34788999999999999988764
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=4.6e-15 Score=130.57 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=110.8
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (460)
||||||+|+||..||++|.++| +. ++|+|++++.+.+.+.+.. ..... +.+.++|++|+++|
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g--~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~i~~~~ 63 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRF--PT-LVWNRTFEKALRHQEEFGS--------------EAVPL-ERVAEARVIFTCLP 63 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTS--CE-EEECSSTHHHHHHHHHHCC--------------EECCG-GGGGGCSEEEECCS
T ss_pred eEEEEeHHHHHHHHHHHHHhCC--CE-EEEeCCHHHHHHHHHHcCC--------------ccccc-ccccceeEEEeccc
Confidence 7999999999999999999988 64 5799988887777665421 12233 44678999999999
Q ss_pred hh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHH
Q 012596 209 VQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK 287 (460)
Q Consensus 209 ~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~ 287 (460)
.. .+..+..++.+.+.+++++|++++ ..+++.+.+.+.+.+. .+.++..|...........+..++.+++.+
T Consensus 64 ~~~~v~~~~~~l~~~~~~~~~iid~sT-~~p~~~~~~~~~~~~~------gi~~ldapVsGg~~~A~~G~L~~~vgG~~~ 136 (156)
T d2cvza2 64 TTREVYEVAEALYPYLREGTYWVDATS-GEPEASRRLAERLREK------GVTYLDAPVSGGTSGAEAGTLTVMLGGPEE 136 (156)
T ss_dssp SHHHHHHHHHHHTTTCCTTEEEEECSC-CCHHHHHHHHHHHHTT------TEEEEECCEESHHHHHHHTCEEEEEESCHH
T ss_pred chhhhhhhhcccccccccccccccccc-CCHHHHHHHHHHHHHc------CCeEEeccccCchhhhccCCEEEEEeCCHH
Confidence 64 577778889899999999999986 6666555555555542 356777777665433323344567778999
Q ss_pred HHHHHHHHHhcCCceEEE
Q 012596 288 LANAVQQLLASKHLRIST 305 (460)
Q Consensus 288 ~~~~l~~lL~~~g~~v~~ 305 (460)
.+++++++|+ .+-++.+
T Consensus 137 ~~~~~~p~L~-~~~~v~~ 153 (156)
T d2cvza2 137 AVERVRPFLA-YAKKVVH 153 (156)
T ss_dssp HHHHHGGGCT-TEEEEEE
T ss_pred HHHHHHHHHH-hcCcCEE
Confidence 9999999994 6555554
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.54 E-value=2.3e-14 Score=125.24 Aligned_cols=143 Identities=13% Similarity=0.174 Sum_probs=106.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.++||+||| +|.||+.||.+|.++| ++|++|||++.. +.++.++++|+++
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G--~~V~~~d~~~~~---------------------------~~~~~~~~~~~v~ 58 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASG--YPISILDREDWA---------------------------VAESILANADVVI 58 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTCGG---------------------------GHHHHHTTCSEEE
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcC--CCcEeccccccc---------------------------ccchhhhhccccc
Confidence 368999999 9999999999999999 999999997631 2344567899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
+++|...+..++.++.+.+++++++++++. +.++ +.+.+.+.++...+....+.||.... ......++..+.
T Consensus 59 ~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S-vk~~----~~~~~~~~~~~~~v~~hP~~Gp~~~~---~~g~~~v~~~g~ 130 (152)
T d2pv7a2 59 VSVPINLTLETIERLKPYLTENMLLADLTS-VKRE----PLAKMLEVHTGAVLGLHPMFGADIAS---MAKQVVVRCDGR 130 (152)
T ss_dssp ECSCGGGHHHHHHHHGGGCCTTSEEEECCS-CCHH----HHHHHHHHCSSEEEEEEECSCTTCSC---CTTCEEEEEEEE
T ss_pred cccchhhheeeeecccccccCCceEEEecc-cCHH----HHHHHHHHccCCEEEecccCCCcccc---cCCcEEEEecCC
Confidence 999999999999999999999999999874 4332 23444444433222334556665432 112233344456
Q ss_pred CHHHHHHHHHHHhcCCceEEE
Q 012596 285 DRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~ 305 (460)
+.+.++++.++|+..|.+++.
T Consensus 131 ~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 131 FPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp CGGGTHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHhCCEEEe
Confidence 778899999999999998874
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.52 E-value=1.4e-13 Score=126.10 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=122.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCC-------CCCCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQ-------KLPENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~-------~l~~~i~a~~~~~ea~~~a 200 (460)
|||+|||+|.+|.++|..|++.| ++|++||.++++++.+++... +.+.++. ....++..+++..++++++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g--~~V~g~D~n~~~i~~ln~g~~-p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 77 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGKS-PIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDS 77 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTCC-SSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTC
T ss_pred CEEEEECCCHhHHHHHHHHHhCC--CcEEEEeCCHHHHHHhcccCC-cccchhhhhhhhhhhcccccccCCCHHHHHhhC
Confidence 89999999999999999999999 999999999999999987432 2222221 1235677889999999999
Q ss_pred cEEEEccchh----------cHHHHHHHhhh---cCCCCCeEEEeccCCccchhhh-HHHHHHHHhCCC-CCCEEEEECc
Q 012596 201 DYCLHAMPVQ----------FSSSFLEGISD---YVDPGLPFISLSKGLELNTLRM-MSQIIPQALRNP-RQPFIALSGP 265 (460)
Q Consensus 201 DiVilaVp~~----------~~~~vl~~i~~---~l~~~~iIV~~~~Gi~~~~~~~-l~e~l~~~lg~~-~~~~~v~~gP 265 (460)
|++++|||.. .+..+++.+.. ...++++||..++ +.+.+.+. ....+.+..+.. ...+.+...|
T Consensus 78 d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST-v~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~P 156 (202)
T d1mv8a2 78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST-VLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP 156 (202)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC-CCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred CEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc-cCCcchhhhhhhhhhccccccccccccchhhh
Confidence 9999999862 24556555543 4446777777665 77765443 344455544321 2356788899
Q ss_pred ccHHHHh----ccCCeEEEEccCCHHHHHHHHHHHhcCCceE
Q 012596 266 SFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRI 303 (460)
Q Consensus 266 ~~a~e~~----~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v 303 (460)
.+..+.. ...+..+++|+.+.+..+.++++++....++
T Consensus 157 E~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~i 198 (202)
T d1mv8a2 157 EFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPI 198 (202)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCE
T ss_pred hhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Confidence 8765421 1234456788888999999999999865444
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=2.4e-15 Score=131.64 Aligned_cols=149 Identities=9% Similarity=0.015 Sum_probs=95.3
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~ 209 (460)
|||||+|+||.+|+..|.+.+ +.+.+|+|++++++++.+.+.. ...++.++++.+|+||+|||+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~--~~~~v~~R~~~~~~~l~~~~~~--------------~~~~~~~~~~~~DiVil~v~d 65 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRY--EIGYILSRSIDRARNLAEVYGG--------------KAATLEKHPELNGVVFVIVPD 65 (153)
T ss_dssp CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHTCC--------------CCCSSCCCCC---CEEECSCT
T ss_pred EEEEeCcHHHHHHHHHHHhCC--CEEEEEeCChhhhcchhhcccc--------------cccchhhhhccCcEEEEeccc
Confidence 799999999999999997754 4556999999999999887531 122566778999999999999
Q ss_pred hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHHH
Q 012596 210 QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLA 289 (460)
Q Consensus 210 ~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~ 289 (460)
.++.++++++. .+++++|+++.+...+. +..... .....+..|...........+..+..++|.+.+
T Consensus 66 ~~i~~v~~~l~---~~~~ivi~~s~~~~~~~-------l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~ 132 (153)
T d2i76a2 66 RYIKTVANHLN---LGDAVLVHCSGFLSSEI-------FKKSGR---ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGL 132 (153)
T ss_dssp TTHHHHHTTTC---CSSCCEEECCSSSCGGG-------GCSSSE---EEEEECSCC--CTTGGGCGGGCCEEECCCTTTH
T ss_pred hhhhHHHhhhc---ccceeeeecccchhhhh-------hhhhcc---ccceeeeecccccchhhhccCcEEEEeCCHHHH
Confidence 99999887764 36889999998776542 221111 011122222222111111111222334577889
Q ss_pred HHHHHHHhcCCceEEEcC
Q 012596 290 NAVQQLLASKHLRISTSS 307 (460)
Q Consensus 290 ~~l~~lL~~~g~~v~~~~ 307 (460)
+.++++|+..|.+++..+
T Consensus 133 ~~~~~l~~~lG~~~~~i~ 150 (153)
T d2i76a2 133 PIVKKIAEEISGKYFVIP 150 (153)
T ss_dssp HHHHHHHHHHCSCEEECC
T ss_pred HHHHHHHHHHCCcEEEeC
Confidence 999999999887766543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=3.6e-11 Score=108.96 Aligned_cols=169 Identities=14% Similarity=0.204 Sum_probs=112.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----------cCCCcc-CCCC---CCCCceEEe
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----------HCNCRY-FPEQ---KLPENVIAT 190 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-----------g~~~~~-~~~~---~l~~~i~a~ 190 (460)
..+||+|||+|.||+.+|..++.+| ++|++||++++.++...+. +..... ..+. ....++..+
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 80 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS 80 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCC--CcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc
Confidence 3589999999999999999999999 9999999999765433221 110000 0000 011356778
Q ss_pred CCHHhhcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC-CEEEEECccc
Q 012596 191 TDAKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-PFIALSGPSF 267 (460)
Q Consensus 191 ~~~~ea~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~-~~~v~~gP~~ 267 (460)
+|..+++.+||+|+-|++.. .-.+++.+|.+.+++++++.+.+.++.... +.+.+..+.. -..-..-|.+
T Consensus 81 ~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~-------la~~~~~p~r~ig~HffnP~~ 153 (192)
T d1f0ya2 81 TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS-------IANATTRQDRFAGLHFFNPVP 153 (192)
T ss_dssp SCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH-------HHTTSSCGGGEEEEEECSSTT
T ss_pred chhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccch-------hhhhccCHhHEEeeccccccC
Confidence 89989999999999999964 356799999999999999988887776542 3333222111 1112233432
Q ss_pred HHHHhccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 268 ALELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 268 a~e~~~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
... ..-++-+ ..+++.++.+.+++...|.......|
T Consensus 154 ~~~-----lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 154 VMK-----LVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp TCC-----EEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred ccc-----EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 221 1111222 13678999999999999988776655
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.14 E-value=8.2e-12 Score=113.65 Aligned_cols=145 Identities=15% Similarity=0.145 Sum_probs=97.2
Q ss_pred CCcccccccccc-ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEE
Q 012596 79 PEPVSAVSSEIR-TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYM 157 (460)
Q Consensus 79 ~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v 157 (460)
|+++||.+.... ...|+..+..++.. ++.++|.+ ..+.++ ..++|||||.|++|..+|..|..-| .+|.+
T Consensus 1 p~aVAE~~l~~~l~l~r~~~~~~~~~~-~~~~~w~~----~~g~el--~gk~vgIiG~G~IG~~va~~l~~fg--~~V~~ 71 (197)
T d1j4aa1 1 PNAIAEHAAIQAARILRQDKAMDEKVA-RHDLRWAP----TIGREV--RDQVVGVVGTGHIGQVFMQIMEGFG--AKVIT 71 (197)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHH-TTBCCCTT----CCBCCG--GGSEEEEECCSHHHHHHHHHHHHTT--CEEEE
T ss_pred CCHHHHHHHHHHHHHHhCcHHHHHHHH-hCCCCcCC----CcCccc--cCCeEEEecccccchhHHHhHhhhc--ccccc
Confidence 678999988765 55555444333322 12233543 224445 3689999999999999999998766 99999
Q ss_pred EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHhhhcCCCCCeEEEeccC
Q 012596 158 LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 158 ~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i~~~l~~~~iIV~~~~G 235 (460)
||+....... ..+. ...+++++++.||+|++++|.+ .+..++ ++....+++++++|+++.|
T Consensus 72 ~d~~~~~~~~--~~~~---------------~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG 134 (197)
T d1j4aa1 72 YDIFRNPELE--KKGY---------------YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 134 (197)
T ss_dssp ECSSCCHHHH--HTTC---------------BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred cCcccccccc--ccee---------------eeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCch
Confidence 9987543221 1111 1247889999999999999954 455544 3455678899999999998
Q ss_pred CccchhhhHHHHHHH
Q 012596 236 LELNTLRMMSQIIPQ 250 (460)
Q Consensus 236 i~~~~~~~l~e~l~~ 250 (460)
-..+. ..+.+.+.+
T Consensus 135 ~ivde-~aL~~aL~~ 148 (197)
T d1j4aa1 135 PLVDT-DAVIRGLDS 148 (197)
T ss_dssp GGBCH-HHHHHHHHH
T ss_pred hhhhh-HHHHHHHhc
Confidence 76653 233344433
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.13 E-value=1.7e-10 Score=103.90 Aligned_cols=167 Identities=12% Similarity=0.122 Sum_probs=109.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CC-ccCCCCC--------CCCceEEeCCHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NC-RYFPEQK--------LPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~-~~~~~~~--------l~~~i~a~~~~~ea 196 (460)
.+||+|||+|.||+.+|..++.+| ++|++||++++.+++..+.-. .. ....... ...++..+++.++
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 80 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKG--TPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD- 80 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT-
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc-
Confidence 578999999999999999999999 999999999986554322100 00 0000000 1124566666654
Q ss_pred cCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHHhc
Q 012596 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALELMN 273 (460)
Q Consensus 197 ~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~-~~v~~gP~~a~e~~~ 273 (460)
+.+||+||-++|.. .-.+++.+|.++++++++|.+.+.++... .+.+.+..+... ..-+.-|.+...
T Consensus 81 ~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~-------~la~~~~~p~r~~g~Hf~nP~~~~~--- 150 (186)
T d1wdka3 81 FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS-------LLAKALKRPENFVGMHFFNPVHMMP--- 150 (186)
T ss_dssp GGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH-------HHGGGCSCGGGEEEEECCSSTTTCC---
T ss_pred ccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHH-------HHHHhccCchheEeeccccCcccCC---
Confidence 78999999999964 35678999999999999999988877764 233333321110 112233332221
Q ss_pred cCCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 274 g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
..-++.+. .+++.++.+.++++..|.......|
T Consensus 151 --lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 151 --LVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp --EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred --eEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 11122232 4678899999999999888776555
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.07 E-value=4.2e-11 Score=109.08 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=95.1
Q ss_pred CCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCC
Q 012596 78 DPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQL 153 (460)
Q Consensus 78 ~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~ 153 (460)
||+++||+..... +.....++.++.+.|++. ..+. +.++ ..++|||||.|++|..+|..|..=| .
T Consensus 1 Sp~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~----~~~~---~~~l--~~ktvgIiG~G~IG~~va~~l~~fg--~ 69 (199)
T d1dxya1 1 SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA----GTFI---GKEL--GQQTVGVMGTGHIGQVAIKLFKGFG--A 69 (199)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHH----TCCC---CCCG--GGSEEEEECCSHHHHHHHHHHHHTT--C
T ss_pred CChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcc----cCcc---cccc--cceeeeeeecccccccccccccccc--e
Confidence 6899999999855 444455666677777431 1222 2335 3589999999999999999998766 9
Q ss_pred eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHhhhcCCCCCeEEE
Q 012596 154 KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFIS 231 (460)
Q Consensus 154 ~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i~~~l~~~~iIV~ 231 (460)
+|++||+.... .. ...+. ..+++++++.||+|++++|.+ .+..++ .+....+++++++|+
T Consensus 70 ~v~~~d~~~~~-------~~----------~~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN 131 (199)
T d1dxya1 70 KVIAYDPYPMK-------GD----------HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVIN 131 (199)
T ss_dssp EEEEECSSCCS-------SC----------CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEE
T ss_pred eeeccCCccch-------hh----------hcchh-HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEe
Confidence 99999986421 00 00122 237889899999999999954 455544 345567889999999
Q ss_pred eccCCccch
Q 012596 232 LSKGLELNT 240 (460)
Q Consensus 232 ~~~Gi~~~~ 240 (460)
++.|-..++
T Consensus 132 ~aRG~vvde 140 (199)
T d1dxya1 132 TARPNLIDT 140 (199)
T ss_dssp CSCTTSBCH
T ss_pred cccHhhhhh
Confidence 999877654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.05 E-value=4.2e-11 Score=107.49 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=95.3
Q ss_pred Ccccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeE
Q 012596 80 EPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKV 155 (460)
Q Consensus 80 ~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V 155 (460)
+++||+..... +.....++.++.+.|.+ .+.... + ..++|+|||+|.+|..+|..+..-| .+|
T Consensus 2 ~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~------~~~~~~---l--~gk~vgIiG~G~IG~~va~~l~~~g--~~v 68 (181)
T d1qp8a1 2 DAVAEFALALLLAPYKRIIQYGEKMKRGDYGR------DVEIPL---I--QGEKVAVLGLGEIGTRVGKILAALG--AQV 68 (181)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC------CSCCCC---C--TTCEEEEESCSTHHHHHHHHHHHTT--CEE
T ss_pred chHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC------CCCCCc---c--cCceEEEeccccccccceeeeeccc--ccc
Confidence 36788888755 44444555666665533 332221 3 3689999999999999999999877 899
Q ss_pred EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHhhhcCCCCCeEEEec
Q 012596 156 YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLS 233 (460)
Q Consensus 156 ~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i~~~l~~~~iIV~~~ 233 (460)
++|+|++. ++. .....+++++++.||+|++++|.+ .+..++ ++....++++.++|+++
T Consensus 69 ~~~d~~~~-------~~~-------------~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~ 128 (181)
T d1qp8a1 69 RGFSRTPK-------EGP-------------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 128 (181)
T ss_dssp EEECSSCC-------CSS-------------SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred cccccccc-------ccc-------------eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEecc
Confidence 99998752 110 112347889999999999999954 455555 45667789999999999
Q ss_pred cCCccchhhhHHHHHHH
Q 012596 234 KGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 234 ~Gi~~~~~~~l~e~l~~ 250 (460)
.|-..++ ..+.+.+.+
T Consensus 129 RG~ivd~-~aL~~aL~~ 144 (181)
T d1qp8a1 129 RAEVLDR-DGVLRILKE 144 (181)
T ss_dssp CGGGBCH-HHHHHHHHH
T ss_pred ccccccc-hhhhhhccc
Confidence 9865543 234444443
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.03 E-value=6.1e-11 Score=107.27 Aligned_cols=147 Identities=12% Similarity=0.197 Sum_probs=101.1
Q ss_pred Ccccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeE
Q 012596 80 EPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKV 155 (460)
Q Consensus 80 ~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V 155 (460)
.++||++.... +.....+|.++.+.|.+ |.+... .+.++ ..++|||||+|++|..+|.++..-| .+|
T Consensus 3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~---~~~~~~--~~~~l--~g~tvgIiG~G~IG~~va~~l~~fg--~~v 73 (191)
T d1gdha1 3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPG---WEPLEL--VGEKL--DNKTLGIYGFGSIGQALAKRAQGFD--MDI 73 (191)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---CCTTTT--CBCCC--TTCEEEEECCSHHHHHHHHHHHTTT--CEE
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc---CCcccc--cccee--cccceEEeecccchHHHHHHHHhhc--ccc
Confidence 35788877744 55556678888888844 332221 12334 4689999999999999999999766 999
Q ss_pred EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHhhhcCCCCCeEEEec
Q 012596 156 YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLS 233 (460)
Q Consensus 156 ~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i~~~l~~~~iIV~~~ 233 (460)
.+|++...........+ .....+++++++.||+|++++|.+ .++.++ ++....+++++++|+++
T Consensus 74 ~~~d~~~~~~~~~~~~~--------------~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~s 139 (191)
T d1gdha1 74 DYFDTHRASSSDEASYQ--------------ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 139 (191)
T ss_dssp EEECSSCCCHHHHHHHT--------------CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred ccccccccccchhhccc--------------ccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecC
Confidence 99998654222222211 123357889999999999999954 456655 34567789999999999
Q ss_pred cCCccchhhhHHHHHHH
Q 012596 234 KGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 234 ~Gi~~~~~~~l~e~l~~ 250 (460)
.|-..++ ..+.+.+.+
T Consensus 140 RG~ivde-~aL~~aL~~ 155 (191)
T d1gdha1 140 RGDLVDN-ELVVAALEA 155 (191)
T ss_dssp CGGGBCH-HHHHHHHHH
T ss_pred Cccchhh-HHHHHHHHc
Confidence 9977664 233344443
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.99 E-value=6.7e-11 Score=107.16 Aligned_cols=149 Identities=11% Similarity=0.077 Sum_probs=97.9
Q ss_pred cccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEE
Q 012596 81 PVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY 156 (460)
Q Consensus 81 ~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~ 156 (460)
++||++.... +.....++.++.+.|.+...|.+ .....+.++ ..++|||||+|++|..+|..|..-| .+|.
T Consensus 2 ~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~-~~~~~~~eL--~gktvgIiG~G~IG~~va~~l~~fg--~~v~ 76 (193)
T d1mx3a1 2 ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIR-EVASGAARI--RGETLGIIGLGRVGQAVALRAKAFG--FNVL 76 (193)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHH-HHTTTCCCC--TTCEEEEECCSHHHHHHHHHHHTTT--CEEE
T ss_pred cHHHHHHHHHHHHHhCHHHHHHHHHcCCccccccccc-ccccCceee--eCceEEEeccccccccceeeeeccc--ccee
Confidence 5778777644 44455566777777744211100 001113344 3689999999999999999999666 9999
Q ss_pred EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHhhhcCCCCCeEEEecc
Q 012596 157 MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSK 234 (460)
Q Consensus 157 v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i~~~l~~~~iIV~~~~ 234 (460)
+|++....-. ....+ +....+++++++.||+|++++|.+ .+..++ .+....+++++++|+++.
T Consensus 77 ~~d~~~~~~~-~~~~~--------------~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sR 141 (193)
T d1mx3a1 77 FYDPYLSDGV-ERALG--------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTAR 141 (193)
T ss_dssp EECTTSCTTH-HHHHT--------------CEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSC
T ss_pred eccCcccccc-hhhhc--------------cccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCC
Confidence 9998643211 11111 234458899999999999999954 455544 345677899999999999
Q ss_pred CCccchhhhHHHHHHH
Q 012596 235 GLELNTLRMMSQIIPQ 250 (460)
Q Consensus 235 Gi~~~~~~~l~e~l~~ 250 (460)
|-..++ ..+.+.+.+
T Consensus 142 G~ivde-~aL~~aL~~ 156 (193)
T d1mx3a1 142 GGLVDE-KALAQALKE 156 (193)
T ss_dssp TTSBCH-HHHHHHHHH
T ss_pred ceEEcH-HHHHHHHHc
Confidence 977654 234444443
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.97 E-value=1.5e-10 Score=104.36 Aligned_cols=136 Identities=11% Similarity=0.067 Sum_probs=94.3
Q ss_pred cccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEE
Q 012596 81 PVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY 156 (460)
Q Consensus 81 ~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~ 156 (460)
|+||+..... +.....++.++.+.|+. .-......++ ..++|+|||+|++|..+|+.|..-| .+|.
T Consensus 2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~------~~~~~~~~~l--~~~~vgiiG~G~IG~~va~~l~~fg--~~v~ 71 (188)
T d2naca1 2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNI------ADCVSHAYDL--EAMHVGTVAAGRIGLAVLRRLAPFD--VHLH 71 (188)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH------HHHHTTCCCC--TTCEEEEECCSHHHHHHHHHHGGGT--CEEE
T ss_pred cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCC------cccCCcceec--cccceeeccccccchhhhhhhhccC--ceEE
Confidence 5788887755 33344555666666632 1111122334 3689999999999999999998777 8999
Q ss_pred EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHhhhcCCCCCeEEEecc
Q 012596 157 MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSK 234 (460)
Q Consensus 157 v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i~~~l~~~~iIV~~~~ 234 (460)
+|++...........+ +....++++.++.||+|++++|.+ .++.++ .+....+++++++|+++.
T Consensus 72 ~~d~~~~~~~~~~~~~--------------~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aR 137 (188)
T d2naca1 72 YTDRHRLPESVEKELN--------------LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTAR 137 (188)
T ss_dssp EECSSCCCHHHHHHHT--------------CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred EEeecccccccccccc--------------ccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCc
Confidence 9998643222222222 234458889999999999999954 455555 345677899999999999
Q ss_pred CCccch
Q 012596 235 GLELNT 240 (460)
Q Consensus 235 Gi~~~~ 240 (460)
|-..+.
T Consensus 138 G~ivd~ 143 (188)
T d2naca1 138 GKLCDR 143 (188)
T ss_dssp GGGBCH
T ss_pred hhhhhH
Confidence 876654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.96 E-value=8.2e-10 Score=97.66 Aligned_cols=194 Identities=14% Similarity=0.196 Sum_probs=102.6
Q ss_pred CeEEEE-CcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVL-GGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~II-GaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|| |+|.||.++|..|+++| ++|++|+|++++++.+.++..+..+ .... ...+........+....+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G--~~V~l~~R~~e~~~~l~~~i~~~~~------~~~~-~~~~~~~~~~~~~~~~~~ 71 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRREEKAEAKAAEYRRIAG------DASI-TGMKNEDAAEACDIAVLT 71 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSHHHHHHHHHHHHHHHS------SCCE-EEEEHHHHHHHCSEEEEC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC------CceE-Eeeccccccchhhhhhhh
Confidence 799999 79999999999999999 9999999999988877664321111 0111 222344444567777777
Q ss_pred cchhcHHHHHHHhhhc------CCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEE---ECcccHHHHhccCCe
Q 012596 207 MPVQFSSSFLEGISDY------VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL---SGPSFALELMNKLPT 277 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~------l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~---~gP~~a~e~~~g~~~ 277 (460)
+......+.+..+... ............+..........+.....+... ..... .++....+.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (212)
T d1jaya_ 72 IPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE--KVVSALHTIPAARFANLDEKFDW 149 (212)
T ss_dssp SCHHHHHHHHHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS--CEEECCTTCCHHHHHCTTCCCCE
T ss_pred eeeeccchHHHHhhhhhccccccccccccccccccccccccchhhhhhhhhhhhh--cccccceeecHHHhcCcccccCc
Confidence 7765544433222211 111111222222222211223334444444321 11111 122222222222333
Q ss_pred EEEEccCCHHHHHHHHH-HHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC
Q 012596 278 AMVVASKDRKLANAVQQ-LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG 335 (460)
Q Consensus 278 ~i~i~~~d~~~~~~l~~-lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~ 335 (460)
...+++.+......+.+ +.+..|++.+..+.+. ....++|+..+.++++....++
T Consensus 150 ~~~~a~~~~~a~~~~~~~~~~~~g~~~~~~G~l~---~a~~~e~~~~l~~~~~~~~~~g 205 (212)
T d1jaya_ 150 DVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLS---NSRLVESLTPLILNIMRFNGMG 205 (212)
T ss_dssp EEEEEESCHHHHHHHHHHHHHSTTEEEEEEESGG---GHHHHHTHHHHHHHHHHHHTCC
T ss_pred cceEEeCCHHHHHHHHHHHhhCCCeEEEEeChHH---HHHHHHhHHHHHHHHHHhCCCC
Confidence 44555556665555544 5567788887655542 3445667666666665554444
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=3.5e-10 Score=101.56 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=92.7
Q ss_pred Ccccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeE
Q 012596 80 EPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKV 155 (460)
Q Consensus 80 ~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V 155 (460)
+++||+..... +.....++.++.+.|+. .. ..+.++ ..++|+|+|.|.+|..+|..+..-| .+|
T Consensus 3 ~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~------~~--~~~~~l--~~k~vgiiG~G~IG~~va~~~~~fg--~~v 70 (184)
T d1ygya1 3 HSAAEHALALLLAASRQIPAADASLREHTWKR------SS--FSGTEI--FGKTVGVVGLGRIGQLVAQRIAAFG--AYV 70 (184)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG------GG--CCBCCC--TTCEEEEECCSHHHHHHHHHHHTTT--CEE
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCc------cc--cccccc--cceeeeeccccchhHHHHHHhhhcc--ceE
Confidence 36788887755 34444455555555532 21 112234 3689999999999999999998655 899
Q ss_pred EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHhhhcCCCCCeEEEec
Q 012596 156 YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLS 233 (460)
Q Consensus 156 ~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i~~~l~~~~iIV~~~ 233 (460)
.+|++........ ..+ +. ..+.+++++.||+|++++|.+ .++.++ ++....+++++++|+++
T Consensus 71 ~~~d~~~~~~~~~-~~~--------------~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~s 134 (184)
T d1ygya1 71 VAYDPYVSPARAA-QLG--------------IE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 134 (184)
T ss_dssp EEECTTSCHHHHH-HHT--------------CE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred EeecCCCChhHHh-hcC--------------ce-eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEec
Confidence 9999875433222 111 12 237889999999999999954 466665 35667789999999999
Q ss_pred cCCccch
Q 012596 234 KGLELNT 240 (460)
Q Consensus 234 ~Gi~~~~ 240 (460)
.|-..++
T Consensus 135 RG~iVde 141 (184)
T d1ygya1 135 RGGLVDE 141 (184)
T ss_dssp CTTSBCH
T ss_pred chhhhhh
Confidence 9977664
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.7e-09 Score=90.62 Aligned_cols=118 Identities=9% Similarity=0.043 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCCcH-HHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeee-cccCCCccc
Q 012596 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNS-MAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLT-CFVNLSRNR 385 (460)
Q Consensus 308 Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~-~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t-~~s~~srn~ 385 (460)
||.+..|.|++.|+...+.+...+..++.-. ...++.+++.|+.+++++.|+........ +.+.. .........
T Consensus 1 dI~~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~~l~~E~~~va~a~g~~~~~~~~~----~~~~~~~~~~~~~~s 76 (124)
T d1ks9a1 1 NIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLR----DYVMQVIDATAENIS 76 (124)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHH----HHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHHhHhHHHHHhCCCchHHHhCHHHHHHHHHHHHHHHHHcCCCCcHHHHH----HHHHHHHhccCCCCC
Confidence 6788899999999865555554454443211 12577899999999999999885321100 00000 011111123
Q ss_pred hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhc
Q 012596 386 TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 386 ~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
+|.+|+.+|+++| .....|+++++|+++|+++|+++++|++++.
T Consensus 77 SM~qD~~~gr~tE-----------id~i~G~vv~~a~~~gi~tP~~~~l~~lik~ 120 (124)
T d1ks9a1 77 SMLQDIRALRHTE-----------IDYINGFLLRRARAHGIAVPENTRLFEMVKR 120 (124)
T ss_dssp HHHHHHHTTCCCS-----------GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHcCCcch-----------HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 5778888887764 3367899999999999999999999999875
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.85 E-value=2.5e-10 Score=106.49 Aligned_cols=167 Identities=13% Similarity=0.103 Sum_probs=110.4
Q ss_pred CCeEEEECcch--HHHHHHH------HHHhcCCCCeEEEEeCCHHHH-HHHHhhcCCCccCCCC----------------
Q 012596 127 TNKVVVLGGGS--FGTAMAA------HVANKKSQLKVYMLMRDPAVC-QSINEKHCNCRYFPEQ---------------- 181 (460)
Q Consensus 127 ~~kI~IIGaG~--mG~~~A~------~La~~G~~~~V~v~~r~~~~~-~~l~~~g~~~~~~~~~---------------- 181 (460)
..++.++|+|. ||..++. ++++.| +.|++.|.+.+++ +.+.+.+. ..|.|+.
T Consensus 40 ~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g--~~v~~~d~d~~~v~~~~~~g~~-~i~~p~l~~~v~~~~~~~~~~~~ 116 (242)
T d2b0ja2 40 THSSITYGAELLHLVPDVKEVIVSDPCFAEEP--GLVVIDEFDPKEVMEAHLSGNP-ESIMPKIREVVKAKAKELPKPPK 116 (242)
T ss_dssp CCHHHHHHHHHHHHCTTCCEEEEECGGGGSSS--EEEECCCSCHHHHHHHHHTTCG-GGTHHHHHHHHHHHHHTSCCTTT
T ss_pred eeeeeeeeecHHhhhhchhhhhccchhhhhcC--CeEEEEeCCHHHHHHHHhcCCc-hhhcchHHHHHHHHHHhccCCcc
Confidence 35688999997 7766766 688988 8999999997654 44433221 1111110
Q ss_pred ----CC-C--CceEEeCCHHhhcCCCcEEEEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 182 ----KL-P--ENVIATTDAKTALLGADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 182 ----~l-~--~~i~a~~~~~ea~~~aDiVilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
.+ | .++++++|+.|+++++|+||+|||. +.+.+++++|.++++++++|+++++ +.+... ..+.+.+.
T Consensus 117 ~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~ST-i~~~~~----~~l~e~l~ 191 (242)
T d2b0ja2 117 ACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT-IPTTKF----AKIFKDLG 191 (242)
T ss_dssp EEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSS-SCHHHH----HHHHHHTT
T ss_pred chhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCC-CcHHHH----HHHHHhcc
Confidence 01 1 3477889999999999999999986 4578999999999999999999886 444322 22333333
Q ss_pred CCCCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEE
Q 012596 254 NPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304 (460)
Q Consensus 254 ~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~ 304 (460)
.. .+.++.++..+.....+ ...+..+..+.+.++++.++|++.|-.++
T Consensus 192 ~k--gi~vi~~hp~a~pe~~g-~~li~~~~aseE~iekv~elles~Gk~~~ 239 (242)
T d2b0ja2 192 RE--DLNITSYHPGCVPEMKG-QVYIAEGYASEEAVNKLYEIGKIARGKAF 239 (242)
T ss_dssp CT--TSEEEECBCSSCTTTCC-CEEEEESSSCHHHHHHHHHHHHHHHSCEE
T ss_pred cC--CCEEECCCccCcCcccc-ceEEecCCCCHHHHHHHHHHHHHHCCCeE
Confidence 21 23344332222111122 34455667889999999999998776554
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.4e-09 Score=97.81 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=90.1
Q ss_pred Ccccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeE
Q 012596 80 EPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKV 155 (460)
Q Consensus 80 ~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V 155 (460)
+++||+..... +.....++.++++.|++ ... ...++ ..++|+|||.|.+|..+|..+..-| .+|
T Consensus 3 ~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~------~~~--~~~~l--~~~~vgiiG~G~IG~~va~~l~~fg--~~v 70 (188)
T d1sc6a1 3 RSVAELVIGELLLLLRGVPEANAKAHRGVGNK------LAA--GSFEA--RGKKLGIIGYGHIGTQLGILAESLG--MYV 70 (188)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------------CCCS--TTCEEEEECCSHHHHHHHHHHHHTT--CEE
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhCCCcc------ccc--ccccc--cceEEEEeecccchhhhhhhccccc--ceE
Confidence 46788887744 44444555555565532 111 12234 3689999999999999999998777 999
Q ss_pred EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HHhhhcCCCCCeEEEec
Q 012596 156 YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLS 233 (460)
Q Consensus 156 ~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~i~~~l~~~~iIV~~~ 233 (460)
.+|++..... . .......+++++++.+|+|++++|.+ .+..++ ++....+++++++|+++
T Consensus 71 ~~~d~~~~~~-------~-----------~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~a 132 (188)
T d1sc6a1 71 YFYDIENKLP-------L-----------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINAS 132 (188)
T ss_dssp EEECSSCCCC-------C-----------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred eeccccccch-------h-----------hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcC
Confidence 9999864200 0 01123357899999999999999954 455555 45667788999999999
Q ss_pred cCCccch
Q 012596 234 KGLELNT 240 (460)
Q Consensus 234 ~Gi~~~~ 240 (460)
.|-..++
T Consensus 133 RG~lvde 139 (188)
T d1sc6a1 133 RGTVVDI 139 (188)
T ss_dssp CSSSBCH
T ss_pred cHHhhhh
Confidence 9977654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.80 E-value=8.2e-09 Score=92.95 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=81.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-----CCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-----l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|.+|.++|..|+ .| ++|++||.++++++.+++ |..+.+.++.. ...++....+...+..++|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g--~~V~g~Din~~~v~~l~~-g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQ--NEVTIVDILPSKVDKINN-GLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TT--SEEEEECSCHHHHHHHHT-TCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSE
T ss_pred CEEEEECCChhHHHHHHHHH-CC--CcEEEEECCHHHHHHHhh-cccccchhhHHHHhhhhhhhhhccchhhhhhhcccc
Confidence 89999999999999998886 48 999999999999999876 33222111110 12345566677777789999
Q ss_pred EEEccchh-----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 203 VilaVp~~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
+++|||.. .+..+.+.+... .++.+++.-+ .+.+.+.+. +.+.+.. ..+...|.+..
T Consensus 77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii~S-tv~pgt~~~----~~~~~~~----~~~~~~PE~i~ 144 (196)
T d1dlja2 77 VIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLIIKS-TIPIGFITE----MRQKFQT----DRIIFSPEFLR 144 (196)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEECS-CCCTTHHHH----HHHHTTC----SCEEECCCCCC
T ss_pred ccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEeee-ecCceeeee----eeeccch----hhhccchhhcc
Confidence 99999963 123333444443 3455555544 366665333 2233222 12456777654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.64 E-value=1.2e-07 Score=81.33 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=70.7
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|.+.|||+|||+|.+|..+|..|+..|...+|+++|+++++++..... +... + .......+.|.++ +++||
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~--~----~~~~~~~~~d~~~-~~~ad 74 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA--F----TAPKKIYSGEYSD-CKDAD 74 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG--G----SCCCEEEECCGGG-GTTCS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcccc--c----cCCceEeeccHHH-hcccc
Confidence 445689999999999999999999988656899999998765433221 1100 0 1123345567765 68999
Q ss_pred EEEEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+++.... .+.++.++|.++ .++.+++..+|-+
T Consensus 75 ivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPv 124 (146)
T d1ez4a1 75 LVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPV 124 (146)
T ss_dssp EEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCcc
Confidence 999986421 133445556655 3567888888733
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.55 E-value=1.2e-07 Score=82.08 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=73.3
Q ss_pred hhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+.|++.+||+|||+|.+|..+|..|+..+. .++.++|.++++++.....-.....+ ......+..+++.+++++++|
T Consensus 2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~ad 78 (154)
T d1pzga1 2 ALVQRRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSV--VDTNVSVRAEYSYEAALTGAD 78 (154)
T ss_dssp CCCSCCCEEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHH--TTCCCCEEEECSHHHHHTTCS
T ss_pred ccccCCCcEEEECCCHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccc--cCCeeEEeccCchhhhhcCCC
Confidence 356778999999999999999999998885 48999998876554332210000000 011223556677778889999
Q ss_pred EEEEccch-----------h----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 202 YCLHAMPV-----------Q----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 202 iVilaVp~-----------~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+++... . .+.++++.+.++- ++.+++..+|-+
T Consensus 79 iVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPv 133 (154)
T d1pzga1 79 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL 133 (154)
T ss_dssp EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred eEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcH
Confidence 99997621 0 1344555566654 567888888744
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.42 E-value=6.2e-07 Score=75.15 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=65.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil 205 (460)
|||.|+|+|.+|..++..|.+.| ++|+++|.++++++.+.++ +.. .+.++..-+ +.+.++ ++++|.++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~~~~~~~-vi~Gd~~~~------~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEIDAL-VINGDCTKI------KTLEDAGIEDADMYIA 71 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCSSE-EEESCTTSH------HHHHHTTTTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCcceecCChhhhhhhhhhhhhh-hccCcccch------hhhhhcChhhhhhhcc
Confidence 89999999999999999999999 9999999999999988765 321 111110000 011222 578999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEE
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~ 231 (460)
+++++...-++..+.+.+.+..+|+-
T Consensus 72 ~t~~d~~N~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 72 VTGKEEVNLMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCcHHHHHHHHHHHHHcCCceEEEE
Confidence 99987655444445555665555543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=4.5e-07 Score=77.17 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.+|..+|..|+..+.-.++.++|+++++++...........+ .+.....+.+. +++++||+|+++.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~----~~~~~~~~~~~-~~~~~adivvita 75 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPF----TRRANIYAGDY-ADLKGSDVVIVAA 75 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGG----SCCCEEEECCG-GGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccc----cccccccCCcH-HHhcCCCEEEEec
Confidence 799999999999999999998886568999999987654332211000000 01112234454 4589999999986
Q ss_pred ch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 208 PV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 208 p~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
-. . .+.++.+.|.++. |+.+++..+|-+
T Consensus 76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPv 119 (140)
T d1a5za1 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (140)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred ccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcH
Confidence 32 1 1334445566554 577888888744
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.40 E-value=6e-07 Score=76.48 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=67.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|.+|..+|..|+..+.-.++.++|+++++.+..... ...... .....+..+++. ++++++|+|++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~----~~~~~i~~~~~~-~~~~dadvvvi 75 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVG----LFDTKVTGSNDY-ADTANSDIVII 75 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHH----TCCCEEEEESCG-GGGTTCSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchh----cccceEEecCCH-HHhcCCeEEEE
Confidence 79999999999999999999988656899999988755433211 110000 011234445665 45799999999
Q ss_pred ccc--h---h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMP--V---Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp--~---~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+.- . . .+.++.+.|.++. |+.+++..+|-+
T Consensus 76 tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPv 121 (142)
T d1guza1 76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPL 121 (142)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSH
T ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCCh
Confidence 852 1 1 1344455666654 577888888733
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.39 E-value=9.1e-07 Score=75.90 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=73.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEE-eCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIA-TTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiV 203 (460)
..||+|||+|.+|..+|..|+..|.-.++.++|++++.++..... +.. . .....+.+ +.+. +.+++||+|
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~--~----~~~~~~~~~~~d~-~~l~daDvv 78 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK--V----FAPKPVDIWHGDY-DDCRDADLV 78 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT--T----SSSSCCEEEECCG-GGTTTCSEE
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCc--c----ccCCCeEEEECCH-HHhccceeE
Confidence 579999999999999999999988545899999998765432221 110 0 01112333 3455 558999999
Q ss_pred EEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 204 ilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
+++.-.. .++++.+.|.++- ++.+++..+|-++ .+...+.+..|
T Consensus 79 vitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd-----~~t~~~~k~sg 138 (148)
T d1ldna1 79 VICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVD-----ILTYATWKFSG 138 (148)
T ss_dssp EECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHH-----HHHHHHHHHHT
T ss_pred EEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccH-----HHHHHHHHHHC
Confidence 9976421 2344556676665 5678888887443 33344555444
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.37 E-value=8.9e-07 Score=75.44 Aligned_cols=103 Identities=11% Similarity=0.134 Sum_probs=67.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|.+|..+|..|+.+|.-.++.++|++++.++..... +.. +.......+..+.|.+ .++++|+|++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~----~~~~~~~~i~~~~d~~-~~~~adiVvi 75 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA----AGIDKYPKIVGGADYS-LLKGSEIIVV 75 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH----HTTTCCCEEEEESCGG-GGTTCSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhc----cccCCCCccccCCCHH-HhccccEEEE
Confidence 89999999999999999999888545899999998765432110 000 0011112355666775 5799999999
Q ss_pred ccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+.-. . .+.++.+.+.++ .++.+++..+|-+
T Consensus 76 tag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPv 121 (142)
T d1ojua1 76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPM 121 (142)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSH
T ss_pred eccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCCh
Confidence 7631 0 123344455555 3578888888843
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.35 E-value=4.2e-07 Score=79.05 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=66.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||.|||+|.||..+|..|+++| ++|++|||+.++++.+.+........ .. .........+.+...|+++.+
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g--~~V~v~dr~~~~a~~l~~~~~~~~~~-~~----~~~~~~~~~~~i~~~~~~i~~ 74 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSG--IKVTVACRTLESAKKLSAGVQHSTPI-SL----DVNDDAALDAEVAKHDLVISL 74 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTT--CEEEEEESCHHHHHHHHTTCTTEEEE-EC----CTTCHHHHHHHHTTSSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECChHHHHHHHhcccccccc-cc----cccchhhhHhhhhccceeEee
Confidence 478999999999999999999999 99999999999999988753211100 00 000011334556789999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|......+...... .+..++++.
T Consensus 75 ~~~~~~~~~~~~~~~---~~~~~~~~~ 98 (182)
T d1e5qa1 75 IPYTFHATVIKSAIR---QKKHVVTTS 98 (182)
T ss_dssp SCGGGHHHHHHHHHH---HTCEEECSS
T ss_pred ccchhhhHHHHHHHh---hccceeecc
Confidence 998766555444333 245556544
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.34 E-value=7.8e-07 Score=77.26 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=69.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++|.|||+|.||..++..|...|. .++++++|+.++++.+.+.... .....++..+.+.++|+||.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~~~-----------~~~~~~~~~~~l~~~Divi~ 90 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLGG-----------EAVRFDELVDHLARSDVVVS 90 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHTC-----------EECCGGGHHHHHHTCSEEEE
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhhhc-----------ccccchhHHHHhccCCEEEE
Confidence 46899999999999999999999982 3799999999998888765210 01123467777889999999
Q ss_pred ccchhc---HHHHHHHhhhcC--CCCCeEEEec
Q 012596 206 AMPVQF---SSSFLEGISDYV--DPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~---~~~vl~~i~~~l--~~~~iIV~~~ 233 (460)
|+.+.. ..+.++.....- .+..++|+++
T Consensus 91 atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 91 ATAAPHPVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp CCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred ecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence 998642 355555443322 2334788875
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.33 E-value=6.8e-07 Score=74.79 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=65.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVila 206 (460)
+++.|+|+|.+|..+|..|.+.| ++|+++|.+++.++.+.+.+.... +.+..-+ +.+.++ ++++|.+|++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--~~vvvid~d~~~~~~~~~~~~~~~-~gd~~~~------~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYATHAV-IANATEE------NELLSLGIRNFEYVIVA 71 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHHTTTTCSEEE-ECCTTCT------THHHHHTGGGCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEecCcHHHHHHHHHhCCcce-eeecccc------hhhhccCCccccEEEEE
Confidence 47899999999999999999999 999999999999998877654221 1111111 112232 6789999999
Q ss_pred cchhcHHH-HHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSS-FLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~-vl~~i~~~l~~~~iIV~~~ 233 (460)
+++..... ++..+.+..+.. .++...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~-~iiar~ 98 (134)
T d2hmva1 72 IGANIQASTLTTLLLKELDIP-NIWVKA 98 (134)
T ss_dssp CCSCHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred cCchHHhHHHHHHHHHHcCCC-cEEeec
Confidence 99765433 344445555433 455444
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.30 E-value=2.5e-06 Score=72.88 Aligned_cols=116 Identities=12% Similarity=0.148 Sum_probs=71.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
+||+|||+|.+|+.+|..|+..|.-.++.++|+++++++.....-.... .....+..+ .+.+.++ +++||+|+++.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~--~~~~~~~~~-~~~d~~~-l~~adiVVita 77 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM--ANLEAHGNI-VINDWAA-LADADVVISTL 77 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG--GGSSSCCEE-EESCGGG-GTTCSEEEECC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc--cccCCccce-eccCHHH-hccccEEEEec
Confidence 6999999999999999999988854689999999886543222100000 011112222 3456655 79999999974
Q ss_pred chh--------------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 208 PVQ--------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 208 p~~--------------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
... .++++.+.|.++ .++.+++..+|-++ .+...+.+..|
T Consensus 78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD-----~~t~~~~k~sg 137 (146)
T d1hyha1 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVD-----VITALFQHVTG 137 (146)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH-----HHHHHHHHHHC
T ss_pred cccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHH-----HHHHHHHHHhC
Confidence 310 123344445554 46788888888443 33344544433
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=1.4e-06 Score=76.53 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=52.8
Q ss_pred CCeEEEECcchHHHHHHH--HHHhc-CC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAA--HVANK-KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~--~La~~-G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
.|||+|||+|++|.+.+. .|+.. +. ..+++++|+++++++........ +......+.++..++|.++++.+||+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~--~~~~~~~~~~i~~~td~~eaL~dad~ 79 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKK--YVEEVGADLKFEKTMNLDDVIIDADF 79 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHH--HHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHH--HHHhcCCCeEEEEeCChhhcccCCCe
Confidence 489999999999976443 34332 11 25899999999876543221100 00111123456778899999999999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
|++++-
T Consensus 80 Vv~~~~ 85 (171)
T d1obba1 80 VINTAM 85 (171)
T ss_dssp EEECCC
T ss_pred Eeeecc
Confidence 999864
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.26 E-value=1.7e-06 Score=75.22 Aligned_cols=105 Identities=22% Similarity=0.354 Sum_probs=80.5
Q ss_pred eeeccc-cchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012596 114 TWRSKA-KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATT 191 (460)
Q Consensus 114 ~~~~~~-~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~ 191 (460)
.|+.++ ..+++ +.++|+|||.|+=|.+=|.+|.+.| .+|++--|... ..+...+.|. .+ -
T Consensus 3 iyyd~D~dl~~i-k~k~IaViGYGsQG~AhAlNLrDSG--~~V~VGLr~gs~s~~~A~~~Gf--------------~v-~ 64 (182)
T d1np3a2 3 VFYDKDCDLSII-QGKKVAIIGYGSQGHAHACNLKDSG--VDVTVGLRSGSATVAKAEAHGL--------------KV-A 64 (182)
T ss_dssp EECGGGCCHHHH-HTSCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHTTC--------------EE-E
T ss_pred ceeeccCChHHH-CCCEEEEEeeCcHhHHHHhhhhhcC--CCEEEEcCCCCccHHHHhhhcc--------------cc-c
Confidence 344444 34455 4589999999999999999999999 89998877654 3455555553 22 2
Q ss_pred CHHhhcCCCcEEEEccchhcHHHHHH-HhhhcCCCCCeEEEeccCCc
Q 012596 192 DAKTALLGADYCLHAMPVQFSSSFLE-GISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 192 ~~~ea~~~aDiVilaVp~~~~~~vl~-~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+.+|+++.+|+|.+.+|+..-.++.+ +|.+++++++.+. ++-|+.
T Consensus 65 ~~~eA~~~aDiim~L~PD~~q~~vy~~~I~p~lk~g~~L~-FaHGfn 110 (182)
T d1np3a2 65 DVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLA-FAHGFS 110 (182)
T ss_dssp CHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEE-ESCCHH
T ss_pred cHHHHhhhcCeeeeecchHHHHHHHHHhhhhhcCCCcEEE-Eeccce
Confidence 68899999999999999988888885 7999999998765 444654
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.26 E-value=2.3e-06 Score=72.77 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=67.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+||+|||+|.+|.++|..|+..+. .++.++|.+++.++..... +.. .+. .....+..+.+.++ ++++|+|++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l-~dl~l~D~~~~~~~~~~~Dl~~~~-~~~---~~~~~i~~~~d~~~-~~~advvvi 75 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEAS-PIE---GFDVRVTGTNNYAD-TANSDVIVV 75 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSSSSHHHHHHHHHHTTH-HHH---TCCCCEEEESCGGG-GTTCSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCc-ceEEEEeeccccchhHHHHhhccc-ccc---CCCCEEEecCcHHH-hcCCCEEEE
Confidence 699999999999999999998875 4899999887654432221 110 000 01124566778776 689999999
Q ss_pred ccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+... . .++++++.|.++- ++.+++..+|-+
T Consensus 76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNPv 121 (142)
T d1uxja1 76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPL 121 (142)
T ss_dssp CCSCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSSH
T ss_pred eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCch
Confidence 8742 1 1234555666653 567888777744
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.22 E-value=1.6e-07 Score=79.19 Aligned_cols=109 Identities=18% Similarity=0.141 Sum_probs=74.7
Q ss_pred HHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccch-HHHHhhC-----CCChHHH
Q 012596 327 GIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRT-VGVRLGS-----GEKLDDI 400 (460)
Q Consensus 327 g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~-~g~~l~~-----g~~~e~~ 400 (460)
|.+..+|+.+|.+......++.|++.+|++.|+++++++++...+. ..++-+. .+..+.+ +++++
T Consensus 3 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~-------~~S~~~~~~~~~~~~~~~~~~f~~~-- 73 (133)
T d1vpda1 3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGL-------AGSTVLDAKAPMVMDRNFKPGFRID-- 73 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST-------TCCHHHHHHHHHHHTTCCCCSSBHH--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc-------ccchhhhhccchhhhccCCCCchHH--
Confidence 4455677788888889999999999999999999999987521110 0011110 1222222 23333
Q ss_pred HhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh-------cCCCHHHHHHHHh
Q 012596 401 LSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID-------NELTPKKAVLELM 452 (460)
Q Consensus 401 ~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~-------~~~~~~~~~~~l~ 452 (460)
...||++++.++|++.|+++|+.+.+.+++. ++.+....++.+.
T Consensus 74 --------l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~ 124 (133)
T d1vpda1 74 --------LHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYE 124 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 2459999999999999999999999998885 3444444444443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.21 E-value=3.5e-06 Score=71.65 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=66.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVila 206 (460)
.||+|||+|.+|..+|..|+..+.-.++.++|+++++++.....-.. ...+....... .+.+ .+++||+|+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~-----~~~~~~~~~~~~~~~~-~~~~adivvit 75 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH-----GLPFMGQMSLYAGDYS-DVKDCDVIVVT 75 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTT-----SCCCTTCEEEC--CGG-GGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeecc-----CcccCCCeeEeeCcHH-HhCCCceEEEe
Confidence 58999999999999999999988656899999998754322211000 00111122333 3444 57999999998
Q ss_pred cc--hh--------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 207 MP--VQ--------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 207 Vp--~~--------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
.- .. .+.++.+.+.++- |+.+++..+|-++ .+...+.+..|
T Consensus 76 ag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvd-----v~t~~~~k~sg 132 (142)
T d1y6ja1 76 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVD-----IITYMIQKWSG 132 (142)
T ss_dssp CCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHH-----HHHHHHHHHHT
T ss_pred cccccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChHH-----HHHHHHHHHHC
Confidence 42 11 1233444555554 5678888887433 33344555433
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.20 E-value=5.7e-06 Score=70.37 Aligned_cols=114 Identities=11% Similarity=0.229 Sum_probs=72.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.||+|||+|.+|+.+|..|+..|.-.++.++|+++++++.... .+.. .+. -...+...++.++ +++||+|++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~-~~~----~~~~i~~~~~~~~-~~daDvVVi 75 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS-SFY----PTVSIDGSDDPEI-CRDADMVVI 75 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG-GGS----TTCEEEEESCGGG-GTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcc-ccC----CCceeecCCCHHH-hhCCcEEEE
Confidence 5899999999999999999998865689999999876543211 1111 011 1123445667654 789999999
Q ss_pred ccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 206 AMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 206 aVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
+.-. . .++++..+|.++. ++.+++..+|-++ .+...+.+..|
T Consensus 76 taG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvD-----vmt~~~~~~sg 133 (143)
T d1llda1 76 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVD-----IATHVAQKLTG 133 (143)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH-----HHHHHHHHHHT
T ss_pred ecccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCchH-----HHHHHHHHHHC
Confidence 7632 1 1333445565654 5678887887443 33445555443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.19 E-value=6.6e-06 Score=71.23 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=68.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+..||+|||+|.+|+.+|..|+..|.-.++.++|++++.++.... .+.. .+.. ...+....+.++ +++||+|
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~-~~~~----~~~~~~~~d~~~-~~~adiV 92 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS-LFLQ----TPKIVADKDYSV-TANSKIV 92 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG-GGCC----CSEEEECSSGGG-GTTCSEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccc-cccC----CCeEEeccchhh-cccccEE
Confidence 347999999999999999999999865589999999876543221 1111 0000 112334456654 7999999
Q ss_pred EEccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+++.-. . .++++..+|.++ .++.+++..+|-++
T Consensus 93 VitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPvD 141 (160)
T d1i0za1 93 VVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVD 141 (160)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred EEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchH
Confidence 996531 1 134445556665 35778888887443
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=6.2e-06 Score=71.37 Aligned_cols=105 Identities=13% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+..||+|||+|.+|..+|..|+..|.-.++.++|++++.++..... +... +. .. ..+....+.++ +.++|+|
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~-~~---~~-~~~~~~~d~~~-~~~adiv 91 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSL-FL---ST-PKIVFGKDYNV-SANSKLV 91 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTT-TC---SC-CEEEEESSGGG-GTTEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcch-hc---CC-CeEEeccchhh-hccccEE
Confidence 4579999999999999999999988656899999998765432211 1110 00 01 12334567655 6899999
Q ss_pred EEccch-----h-------cHHHHHHH----hhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPV-----Q-------FSSSFLEG----ISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~-----~-------~~~~vl~~----i~~~l~~~~iIV~~~~Gi~ 237 (460)
+++.-. . .-..++++ |.++ .++.+++..+|-++
T Consensus 92 vitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNPvD 140 (159)
T d2ldxa1 92 IITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNPVD 140 (159)
T ss_dssp EECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSSHH
T ss_pred EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCcHH
Confidence 997632 1 11223333 4443 46778888888433
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.11 E-value=2.9e-07 Score=77.51 Aligned_cols=109 Identities=15% Similarity=0.100 Sum_probs=74.3
Q ss_pred HHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccccc--CCCceeeecccCCCccchHHHHhhC-----CCChHH
Q 012596 327 GIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRLGS-----GEKLDD 399 (460)
Q Consensus 327 g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~--~~gd~~~t~~s~~srn~~~g~~l~~-----g~~~e~ 399 (460)
|.+..+|+.+|.+......++.|++.+|++.|+|+++++++. +.+.... .. ......+.. +++++
T Consensus 2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~------~~-~~~p~~~~~~~~~~~f~~~- 73 (132)
T d2cvza1 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNA------TE-NLIPQRVLTRAFPKTFALG- 73 (132)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHH------HH-HTHHHHTTTSCCCCSSBHH-
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhh------hh-hhhhHHHHHHhhhhhhHHH-
Confidence 445566788889999999999999999999999999988752 2221110 00 011122222 23332
Q ss_pred HHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh-------cCCCHHHHHHHHh
Q 012596 400 ILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID-------NELTPKKAVLELM 452 (460)
Q Consensus 400 ~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~-------~~~~~~~~~~~l~ 452 (460)
...||++++.++|+++|+++|+.+.+.+++. ++.|....++.+.
T Consensus 74 ---------~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e 124 (132)
T d2cvza1 74 ---------LLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLE 124 (132)
T ss_dssp ---------HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHH
T ss_pred ---------HHhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3459999999999999999999999888884 3444444444443
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.11 E-value=1.6e-06 Score=72.98 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=69.7
Q ss_pred HHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccccc--CCCce-eeecccCCC--c-cchHHHHhhCCCChHHH
Q 012596 327 GIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGDI-MLTCFVNLS--R-NRTVGVRLGSGEKLDDI 400 (460)
Q Consensus 327 g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~--~~gd~-~~t~~s~~s--r-n~~~g~~l~~g~~~e~~ 400 (460)
|.+..+|+.+|.+......++.|++.++++.|+|++++.++. +.+.. +.....+.. . ..-...+...++++..
T Consensus 3 GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l- 81 (134)
T d3cuma1 3 GAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQL- 81 (134)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHH-
Confidence 455667788888889999999999999999999999988752 22221 111111000 0 0001122233444432
Q ss_pred HhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 401 LSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 401 ~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
..||+++++++|++.|+++|+.+.+.+++.
T Consensus 82 ---------~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~ 111 (134)
T d3cuma1 82 ---------MAKDLGLAQEAAQASASSTPMGSLALSLYR 111 (134)
T ss_dssp ---------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 459999999999999999999999888774
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.11 E-value=5.8e-06 Score=70.37 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=68.8
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCcEEEEc
Q 012596 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHA 206 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVila 206 (460)
||+|||+ |.+|+++|..|+..|.-.++.++|.++.+.+.+.-.+... ..+..... ..+..+++++||+|+++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~------~~~~~~~~~~~~~~~~~~~aDivVit 75 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET------RATVKGYLGPEQLPDCLKGCDVVVIP 75 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSS------SCEEEEEESGGGHHHHHTTCSEEEEC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhh------hcCCCeEEcCCChHHHhCCCCEEEEC
Confidence 8999996 9999999999999886457999999876655543332211 11111112 34556778999999997
Q ss_pred cch----------------hcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 207 Vp~----------------~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
--. ..++++.+.+.++ .++.+++..+|-++
T Consensus 76 ag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD 121 (144)
T d1mlda1 76 AGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVN 121 (144)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred CCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Confidence 531 1245566667776 46788888887544
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.09 E-value=6e-06 Score=70.36 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=48.0
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhh--cCCCccCCCCCCCCceEE--eCCHHhhcCCC
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEK--HCNCRYFPEQKLPENVIA--TTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~--~~~~l~~~--g~~~~~~~~~~l~~~i~a--~~~~~ea~~~a 200 (460)
|||+|||+ |.+|.++|..|+..+.-.++.++|++++ +++..... +... .......+.. +++. +.+++|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~----~~~~~~~~~~~~~~d~-~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALA----GTRSDANIYVESDENL-RIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHT----TSCCCCEEEEEETTCG-GGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhccc----ccccCCccccCCcchH-HHhccc
Confidence 79999996 9999999999999885458999998863 22222111 1000 0001112222 2344 457899
Q ss_pred cEEEEcc
Q 012596 201 DYCLHAM 207 (460)
Q Consensus 201 DiVilaV 207 (460)
|+|+++.
T Consensus 76 DvVVitA 82 (145)
T d1hyea1 76 DVVIITS 82 (145)
T ss_dssp SEEEECC
T ss_pred eEEEEec
Confidence 9999984
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.08 E-value=5.3e-06 Score=74.56 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=85.9
Q ss_pred ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcC----CCCeEEEEeCCH-HHH
Q 012596 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKK----SQLKVYMLMRDP-AVC 165 (460)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G----~~~~V~v~~r~~-~~~ 165 (460)
...++++-..+++.|+- ....+.++.++||+|||.|.=|.+-|.+|.+.| .+.+|++--|.. ...
T Consensus 18 ~~~~~~e~i~~~~r~~f----------~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~ 87 (226)
T d1qmga2 18 TLSGHDEYIVRGGRNLF----------PLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSF 87 (226)
T ss_dssp EETTEEEEEEECCGGGG----------GGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCH
T ss_pred eeCCceeEEEecccchh----------hhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhH
Confidence 45555565555554421 112234555689999999999999999999965 125577665544 334
Q ss_pred HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 166 QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 166 ~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++..+.|.... +..+ -+.+|+++.+|+|++.+|+..-.++.++|.+++++|+.+.. +-|+.
T Consensus 88 ~kA~~dGf~v~---------~~~v-~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~F-aHGFn 148 (226)
T d1qmga2 88 AEARAAGFSEE---------NGTL-GDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGL-SHGFL 148 (226)
T ss_dssp HHHHHTTCCGG---------GTCE-EEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE-SSSHH
T ss_pred HHHHHcCCccC---------CCcc-cCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeee-cchhh
Confidence 55556664211 1111 15778899999999999999988899999999999987653 44654
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.00 E-value=1.3e-05 Score=68.54 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=71.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||+|||+|.+|+.+|..|...+. .++.++|+++++++.....-.....+. ..+..+....+.+ .++++|+|+++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~--~~~~~v~~~~~~~-~~~~advvvit 78 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMA--YSNCKVSGSNTYD-DLAGADVVIVT 78 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHH--TCCCCEEEECCGG-GGTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhcccc--CCCcEEEeccccc-ccCCCcEEEEe
Confidence 4799999999999999999988876 589999998865543322100000000 0112344445554 47999999997
Q ss_pred cchh---------------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 207 MPVQ---------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 207 Vp~~---------------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
.-.. .+.++.+.|+++- ++.+++..+|-++ .+...+.+..|
T Consensus 79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD-----~~t~~~~~~sg 140 (150)
T d1t2da1 79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVD-----VMVQLLHQHSG 140 (150)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHH-----HHHHHHHHHHC
T ss_pred cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchH-----HHHHHHHHHHC
Confidence 6411 1334445565553 6788888887443 33445555433
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.99 E-value=6.5e-06 Score=71.84 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=51.7
Q ss_pred CCCeEEEECcchHHHHHH--HHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGGGSFGTAMA--AHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A--~~La~~G-~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+..||+|||+|..|+..+ ..|...- . ..+++++|.++++++........ +......+..+..++|..|++++||
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~eal~~AD 79 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDV--FIREKAPDIEFAATTDPEEAFTDVD 79 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHH--HHHHHCTTSEEEEESCHHHHHSSCS
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHH--HHHHhCCCcceEecCChhhccCCCC
Confidence 457999999999987633 3333221 0 13899999999876533221000 0000112345677889999999999
Q ss_pred EEEEccc
Q 012596 202 YCLHAMP 208 (460)
Q Consensus 202 iVilaVp 208 (460)
+||++.-
T Consensus 80 ~Vvitag 86 (167)
T d1u8xx1 80 FVMAHIR 86 (167)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999874
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.98 E-value=7.2e-06 Score=71.68 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=49.9
Q ss_pred CCeEEEECcchHHH--HHHHHHHhcC-C-CCeEEEEeCCHHH--HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGT--AMAAHVANKK-S-QLKVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~--~~A~~La~~G-~-~~~V~v~~r~~~~--~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
.|||+|||+|+.|. .++..+.... . ..++.++|.+++. .+.+...+. .++.....+..+..++|..++++++
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~--~~~~~~~~~~~~~~~td~~~al~ga 78 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAK--RMVEKAGVPIEIHLTLDRRRALDGA 78 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHH--HHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHH--HHHHhcCCCceeeecCCchhhcCCC
Confidence 37999999997764 4555555431 1 1389999997743 333322110 0111112334566788888889999
Q ss_pred cEEEEccc
Q 012596 201 DYCLHAMP 208 (460)
Q Consensus 201 DiVilaVp 208 (460)
|+|+++..
T Consensus 79 DvVv~ta~ 86 (169)
T d1s6ya1 79 DFVTTQFR 86 (169)
T ss_dssp SEEEECCC
T ss_pred CEEEEccc
Confidence 99999985
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=3.4e-05 Score=67.69 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=60.4
Q ss_pred cCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 125 ERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
|+.+||||||+|.||.. ....+.+.+...+|+ ++|+++++++.+.+... ....++|.+++++ +.
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~------------~~~~~~~~~ell~~~~i 68 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG------------NPAVFDSYEELLESGLV 68 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS------------SCEEESCHHHHHHSSCC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccc------------ccceeeeeecccccccc
Confidence 35579999999999986 466666543224555 78999988887766421 1235678888765 58
Q ss_pred cEEEEccchhcHHHHHHHhhh
Q 012596 201 DYCLHAMPVQFSSSFLEGISD 221 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~ 221 (460)
|+|++|+|.....+++....+
T Consensus 69 d~v~I~tp~~~h~~~~~~al~ 89 (181)
T d1zh8a1 69 DAVDLTLPVELNLPFIEKALR 89 (181)
T ss_dssp SEEEECCCGGGHHHHHHHHHH
T ss_pred ceeeccccccccccccccccc
Confidence 999999998876666655544
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.98 E-value=2.8e-05 Score=68.32 Aligned_cols=82 Identities=10% Similarity=0.143 Sum_probs=61.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc--CCCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL--LGADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~--~~aDiVi 204 (460)
+||||||+|.||...+..|.... +.+|+ ++|+++++++.+.+.. .++...+..+|.++++ .+.|+|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~~~iD~v~ 71 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAFATAN---------NYPESTKIHGSYESLLEDPEIDALY 71 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHT---------TCCTTCEEESSHHHHHHCTTCCEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccccchhcc---------ccccceeecCcHHHhhhccccceee
Confidence 69999999999999999998764 36766 7799998887776542 1223345677888876 4689999
Q ss_pred EccchhcHHHHHHHh
Q 012596 205 HAMPVQFSSSFLEGI 219 (460)
Q Consensus 205 laVp~~~~~~vl~~i 219 (460)
+++|.....+.+...
T Consensus 72 I~tp~~~h~~~~~~~ 86 (184)
T d1ydwa1 72 VPLPTSLHVEWAIKA 86 (184)
T ss_dssp ECCCGGGHHHHHHHH
T ss_pred ecccchhhcchhhhh
Confidence 999987665554444
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.96 E-value=1.3e-05 Score=68.89 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=66.6
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCC-C----CeEEEEe--CCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKS-Q----LKVYMLM--RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~-~----~~V~v~~--r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
|++.|||+|||+ |.+|..+|..|+..+. + ....+++ ++.+..+.+...-.. ........+...++..+
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED----CAFPLLAGLEATDDPKV 76 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT----TTCTTEEEEEEESCHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhc----cccccccccccCCchhh
Confidence 556789999997 9999999999998653 1 1123333 333344333221000 01112334566777778
Q ss_pred hcCCCcEEEEccc-----hh-----------cHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 196 ALLGADYCLHAMP-----VQ-----------FSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 196 a~~~aDiVilaVp-----~~-----------~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+++++|+||++-- .. .++++.+.|.++.+++.+++..+|-
T Consensus 77 ~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNP 132 (154)
T d1y7ta1 77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNP 132 (154)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred hcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 8999999999762 11 2344556677777677777777773
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.92 E-value=2.5e-05 Score=68.00 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=60.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.+||||||+|.||..++..|.+.. +.+++ +++++++... ...+....+..+...+.|+|+
T Consensus 2 ~kirvgiiG~G~ig~~~~~~l~~~~-~~elvav~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~D~Vv 63 (170)
T d1f06a1 2 TNIRVAIVGYGNLGRSVEKLIAKQP-DMDLVGIFSRRATLDT-----------------KTPVFDVADVDKHADDVDVLF 63 (170)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCS-SEEEEEEEESSSCCSS-----------------SSCEEEGGGGGGTTTTCSEEE
T ss_pred CcceEEEECChHHHHHHHHHHHhCC-CcEEEEEEeccccccc-----------------ccccccchhhhhhccccceEE
Confidence 4589999999999999999998753 35655 6677753110 112344556777778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+|+....++... .+..|.-+|.+.+
T Consensus 64 i~tp~~~h~~~a~~---aL~aG~~vv~~~~ 90 (170)
T d1f06a1 64 LCMGSATDIPEQAP---KFAQFACTVDTYD 90 (170)
T ss_dssp ECSCTTTHHHHHHH---HHTTTSEEECCCC
T ss_pred EeCCCcccHHHHHH---HHHCCCcEEEecC
Confidence 99998876554433 3445766665544
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=1.9e-05 Score=68.15 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=56.9
Q ss_pred CeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||||||+|.||.. ....+.... +.+++ ++|+++++++.+.+... +...++.++++++.|+|++
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~-~~~i~~v~d~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~D~V~I 67 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAAS-DWTLQGAWSPTRAKALPICESWR-------------IPYADSLSSLAASCDAVFV 67 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCS-SEEEEEEECSSCTTHHHHHHHHT-------------CCBCSSHHHHHTTCSEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEEechhHhhhhhhhccc-------------ccccccchhhhhhcccccc
Confidence 79999999999986 456666543 25655 78899888777765421 1234577787889999999
Q ss_pred ccchhcHHHHHHHhhh
Q 012596 206 AMPVQFSSSFLEGISD 221 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~ 221 (460)
|+|.....+++....+
T Consensus 68 ~tp~~~h~~~~~~al~ 83 (164)
T d1tlta1 68 HSSTASHFDVVSTLLN 83 (164)
T ss_dssp CSCTTHHHHHHHHHHH
T ss_pred cccchhcccccccccc
Confidence 9998766555554433
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=1.1e-05 Score=69.84 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=51.4
Q ss_pred CeEEEECcchHHHHHHHHH-HhcC---CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 128 NKVVVLGGGSFGTAMAAHV-ANKK---SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~L-a~~G---~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|||+|||+|+.|.+++... ++.- ...++.++|.++++++...+..... ...+..+.++++..+++++||+|
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~-----~~~~~~~~~t~~~~~~l~~aDvV 75 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRL-----VKDRFKVLISDTFEGAVVDAKYV 75 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHH-----HTTSSEEEECSSHHHHHTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhh-----hccCceEEEecCcccccCCCCEE
Confidence 7999999999998877543 2211 1258999999998766443321000 01123466778888889999999
Q ss_pred EEccc
Q 012596 204 LHAMP 208 (460)
Q Consensus 204 ilaVp 208 (460)
+++.-
T Consensus 76 Vita~ 80 (162)
T d1up7a1 76 IFQFR 80 (162)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99864
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=3.2e-05 Score=66.73 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=67.7
Q ss_pred hccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
++...++++|+|.|.+|..+|..|...| .+|+++++++..+-+..-.|. .+ ...++++..+|+
T Consensus 20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G--~~V~v~e~dp~~al~A~~dG~--------------~v-~~~~~a~~~adi 82 (163)
T d1li4a1 20 VMIAGKVAVVAGYGDVGKGCAQALRGFG--ARVIITEIDPINALQAAMEGY--------------EV-TTMDEACQEGNI 82 (163)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EE-CCHHHHTTTCSE
T ss_pred ceecCCEEEEeccccccHHHHHHHHhCC--CeeEeeecccchhHHhhcCce--------------Ee-eehhhhhhhccE
Confidence 4546789999999999999999999888 999999999854333333332 22 367888999999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+.++....+ +-.+-.+.++++.++.++.
T Consensus 83 vvtaTGn~~v--I~~eh~~~MKdgaIL~N~G 111 (163)
T d1li4a1 83 FVTTTGCIDI--ILGRHFEQMKDDAIVCNIG 111 (163)
T ss_dssp EEECSSCSCS--BCHHHHTTCCTTEEEEECS
T ss_pred EEecCCCccc--hhHHHHHhccCCeEEEEec
Confidence 9999886542 0112335577888887764
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.85 E-value=7.7e-05 Score=64.32 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=57.0
Q ss_pred CeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCcEEEE
Q 012596 128 NKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~-~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVil 205 (460)
|||||||+|.||.. ....|.+.+ +.++.+++++++.++.+.+..... ...+|.+++++ +.|+|++
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~-~~~~~~~d~~~~~~~~~~~~~~~~------------~~~~~~~~ll~~~iD~V~I 68 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRYRVS------------ATCTDYRDVLQYGVDAVMI 68 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHTTCC------------CCCSSTTGGGGGCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhcccc------------cccccHHHhcccccceecc
Confidence 79999999999976 455555543 368889999999888887642111 12345556554 6799999
Q ss_pred ccchhcHHHHHHHhhh
Q 012596 206 AMPVQFSSSFLEGISD 221 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~ 221 (460)
|+|.....+++....+
T Consensus 69 ~tp~~~H~~~~~~al~ 84 (167)
T d1xeaa1 69 HAATDVHSTLAAFFLH 84 (167)
T ss_dssp CSCGGGHHHHHHHHHH
T ss_pred cccccccccccccccc
Confidence 9998877666555444
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=5.3e-05 Score=64.29 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=62.6
Q ss_pred CeEEEEC-cchHHHHHHHHHHhc-CCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCcEE
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANK-KSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~-G~~~~V~v~~r~~~~-~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiV 203 (460)
|||+||| +|.+|+.+|..|+.. +...++.++|..+.. .+.+--.+... ..+..... +++. ++++++|+|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~------~~~~~~~~~~~~~-~~~~~aDvv 73 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPT------AVKIKGFSGEDAT-PALEGADVV 73 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCS------SCEEEEECSSCCH-HHHTTCSEE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCcc------ccCCcEEEcCCCc-cccCCCCEE
Confidence 7999999 599999999988643 544789999986532 11111112110 11111112 2344 457899999
Q ss_pred EEccch----------------hcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~----------------~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|++--. ..++++.++|.++- ++.+++..+|-++
T Consensus 74 vitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD 122 (145)
T d2cmda1 74 LISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVN 122 (145)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHH
T ss_pred EECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCch
Confidence 997621 02455556676665 5678888887444
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.71 E-value=1.4e-05 Score=69.22 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=69.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-CccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~-~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.-||.|||+|..|..-++...+-| .+|+++|.+.+..+.+...... .... ......+++.++++|+||-
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~~~~~~--------~~~~~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGSRVELL--------YSNSAEIETAVAEADLLIG 101 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGGGSEEE--------ECCHHHHHHHHHTCSEEEE
T ss_pred CcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcccceee--------hhhhhhHHHhhccCcEEEE
Confidence 479999999999999999999888 8999999999988888765321 1100 0001234667889999999
Q ss_pred ccch--hcHHHH-HHHhhhcCCCCCeEEEec
Q 012596 206 AMPV--QFSSSF-LEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~--~~~~~v-l~~i~~~l~~~~iIV~~~ 233 (460)
++-- .....+ -++..+.+++|.+||+++
T Consensus 102 aalipG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 102 AVLVPGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred eeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence 8742 222222 245567789999999986
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.64 E-value=8.3e-05 Score=63.59 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=66.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCC-----CCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~-----~~~V~v~~r~~~--~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
+.|||+|||+ |.+|..+|..|+..+. ..++.++|.++. +++.+.-..... .......+...++..+++
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 77 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDC----ALPLLKDVIATDKEEIAF 77 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHT----CCTTEEEEEEESCHHHHT
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccc----ccccccccccCccccccc
Confidence 4689999996 9999999999986542 125777776553 344332210000 111223456677888889
Q ss_pred CCCcEEEEccch----------------hcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 198 LGADYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 198 ~~aDiVilaVp~----------------~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+++|+||++--. ..+.++.+.|.++.++..+++..+|-
T Consensus 78 ~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNP 131 (154)
T d5mdha1 78 KDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (154)
T ss_dssp TTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCc
Confidence 999999997631 12445556676766655556666763
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.61 E-value=0.00016 Score=61.02 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=61.6
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCH--HHHH----HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP--AVCQ----SINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~--~~~~----~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
.||+||| +|.+|..+|..|...+.-.++.++|.+. +.++ .+.. .. .+ ..+..+. +.+.++ +++|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~-~~---~~---~~~~~i~-~~~~~~-~~~a 71 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH-GI---AY---DSNTRVR-QGGYED-TAGS 71 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHH-HH---TT---TCCCEEE-ECCGGG-GTTC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhh-cc---cc---cCCceEe-eCCHHH-hhhc
Confidence 3899999 6999999999999998655899999643 3322 2221 00 01 1112232 345555 6899
Q ss_pred cEEEEccc--h---h-----------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 201 DYCLHAMP--V---Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 201 DiVilaVp--~---~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|+|+++.- . . -++++.+.|.++- ++.+++..+|-++
T Consensus 72 DiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPvD 123 (142)
T d1o6za1 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVD 123 (142)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHH
T ss_pred CEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChHH
Confidence 99999753 1 1 1233444555544 5678888887443
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=8.2e-05 Score=64.55 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=66.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++|.|+|+|..+.+++..|.+.| .+|++++|+.++++.+.+.-... ..+...+..+.....+|+||-
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g--~~i~I~nRt~~ka~~l~~~~~~~---------~~~~~~~~~~~~~~~~dliIN 85 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRTVSRAEELAKLFAHT---------GSIQALSMDELEGHEFDLIIN 85 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHTGGG---------SSEEECCSGGGTTCCCSEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHhcccc--eEEEeccchHHHHHHHHHHHhhc---------ccccccccccccccccceeec
Confidence 4589999999999999999999998 78999999999988887642110 012332222222467999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|..-..+....-...++++.+++++.
T Consensus 86 ~Tp~G~~~~~~~~~~~~~~~~~~v~D~v 113 (170)
T d1nyta1 86 ATSSGISGDIPAIPSSLIHPGIYCYDMF 113 (170)
T ss_dssp CCSCGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred ccccCcccCCCCCcHHHhccCcEEEEee
Confidence 9996432221111123466777888875
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=9.7e-06 Score=72.45 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=50.9
Q ss_pred cCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 125 ~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|.|+||.|+| .|.+|+.++..|.++| ++|+++.|++++.......+.. .+ ...+.-.++..++++++|+|
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g--~~V~~~~R~~~~~~~~~~~~~~--~~-----~gD~~d~~~l~~al~~~d~v 71 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSRLPSEGPRPAH--VV-----VGDVLQAADVDKTVAGQDAV 71 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGGSCSSSCCCSE--EE-----ESCTTSHHHHHHHHTTCSEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEEcChhhcccccccccc--cc-----cccccchhhHHHHhcCCCEE
Confidence 4678999999 6999999999999999 9999999998653322111110 00 00000012445678899999
Q ss_pred EEccc
Q 012596 204 LHAMP 208 (460)
Q Consensus 204 ilaVp 208 (460)
|.++.
T Consensus 72 i~~~g 76 (205)
T d1hdoa_ 72 IVLLG 76 (205)
T ss_dssp EECCC
T ss_pred EEEec
Confidence 98875
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.52 E-value=0.00023 Score=58.89 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=65.4
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v-~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|+|+ |+||..++..+.+.+ +++.. ++++ ..+.+.++|+||=
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~--~~l~~~id~~-------------------------------~~~~~~~~DVvID 47 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG--HELVLKVDVN-------------------------------GVEELDSPDVVID 47 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEETT-------------------------------EEEECSCCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC--CeEEEEECCC-------------------------------cHHHhccCCEEEE
Confidence 79999996 999999999988887 77663 3322 1123567899998
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccH
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA 268 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a 268 (460)
.+....+.+.++.... .+..+|.-++|+..+.. +.+.+. .. ..+++..|.+.
T Consensus 48 FS~p~~~~~~l~~~~~---~~~p~ViGTTG~~~~~~----~~i~~~-ak---~~pv~~a~N~s 99 (128)
T d1vm6a3 48 FSSPEALPKTVDLCKK---YRAGLVLGTTALKEEHL----QMLREL-SK---EVPVVQAYSRT 99 (128)
T ss_dssp CSCGGGHHHHHHHHHH---HTCEEEECCCSCCHHHH----HHHHHH-TT---TSEEEECSCTH
T ss_pred ecCHHHHHHHHHHHHh---cCCCEEEEcCCCCHHHH----HHHHHH-Hh---hCCEEeeeccC
Confidence 8777777776665544 36778888999987643 223332 11 23566666643
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.48 E-value=5e-05 Score=66.21 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=62.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++|.|+|+|.+|.+++..|.+.+ .+|++++|+.++++.+.+.-.. ..++.........+.++|+||-
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~---------~~~~~~~~~~~~~~~~~diiIN 85 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQP---------YGNIQAVSMDSIPLQTYDLVIN 85 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGG---------GSCEEEEEGGGCCCSCCSEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhh---------ccccchhhhccccccccceeee
Confidence 4579999999999999999999866 7999999999998888764210 0112222222233578999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|..............++++..++++.
T Consensus 86 ~tp~g~~~~~~~~~~~~~~~~~~~~D~v 113 (171)
T d1p77a1 86 ATSAGLSGGTASVDAEILKLGSAFYDMQ 113 (171)
T ss_dssp CCCC-------CCCHHHHHHCSCEEESC
T ss_pred cccccccccccchhhhhhcccceeeeee
Confidence 9996533222211122334466677654
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.48 E-value=0.00019 Score=61.61 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=54.6
Q ss_pred ccCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHH-HH-HHHHhhcCCCccCCCCCCCCceEEeCCHHhh---
Q 012596 124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPA-VC-QSINEKHCNCRYFPEQKLPENVIATTDAKTA--- 196 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~-~~-~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea--- 196 (460)
|++++||||||+|.+|.- +...|.... ..+++ +.+|+.+ .. ....+.|... ...+.++.
T Consensus 1 M~kkirvaIIGaG~ig~~~~~~~l~~~~-~~el~avas~~~~~~~~~~a~~~~i~~-------------~~~~~d~l~~~ 66 (157)
T d1nvmb1 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAK-YLEMGAMVGIDAASDGLARAQRMGVTT-------------TYAGVEGLIKL 66 (157)
T ss_dssp CCSCEEEEEECCSHHHHHHHHHHHHHCS-SEEEEEEECSCTTCHHHHHHHHTTCCE-------------ESSHHHHHHHS
T ss_pred CCCCcEEEEEcCcHHHHHHHHHHHhhCC-cceEEEEEecchhccchhhhhhcCCcc-------------cccceeeeeec
Confidence 556789999999999985 555554433 24665 4577754 22 2233333211 11122221
Q ss_pred --cCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEecc
Q 012596 197 --LLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 197 --~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
..+.|+||+++|... ..... ....++.|..+|+.+.
T Consensus 67 ~~~~~iDiVf~ATpag~h~~~~~--~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 67 PEFADIDFVFDATSASAHVQNEA--LLRQAKPGIRLIDLTP 105 (157)
T ss_dssp GGGGGEEEEEECSCHHHHHHHHH--HHHHHCTTCEEEECST
T ss_pred ccccccCEEEEcCCchhHHHhHH--HHHHHHcCCEEEEccc
Confidence 246899999999753 32211 1222356888998774
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.45 E-value=0.00022 Score=61.08 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=70.2
Q ss_pred hccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
+|...+++.|+|.|-+|..+|.++...| ..|+++..+|-++-+..-+|. ++ .+.+++++.+|+
T Consensus 19 ~~laGk~vvV~GYG~vGrG~A~~~rg~G--a~V~V~E~DPi~alqA~mdGf--------------~v-~~~~~a~~~aDi 81 (163)
T d1v8ba1 19 FLISGKIVVICGYGDVGKGCASSMKGLG--ARVYITEIDPICAIQAVMEGF--------------NV-VTLDEIVDKGDF 81 (163)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHHHHHHHTTTC--------------EE-CCHHHHTTTCSE
T ss_pred ceecCCEEEEecccccchhHHHHHHhCC--CEEEEEecCchhhHHHHhcCC--------------cc-CchhHccccCcE
Confidence 6666799999999999999999999988 899999999954333222332 23 368899999999
Q ss_pred EEEccchhcH--HHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 203 CLHAMPVQFS--SSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 203 VilaVp~~~~--~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+|.++....+ .+ -.+.++++.+|.+.. .++.+
T Consensus 82 ~vTaTGn~~vI~~~----h~~~MKdgaIl~N~G-Hfd~E 115 (163)
T d1v8ba1 82 FITCTGNVDVIKLE----HLLKMKNNAVVGNIG-HFDDE 115 (163)
T ss_dssp EEECCSSSSSBCHH----HHTTCCTTCEEEECS-STTTS
T ss_pred EEEcCCCCccccHH----HHHHhhCCeEEEecc-ccchh
Confidence 9999987542 22 234577788777764 24443
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00014 Score=62.69 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=77.6
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..+||+|+|+ |.||..++..+.+.. +.+++ .++|..... .|.....+.+. -+.++..++++++....+|+|
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~-~~~lv~~~~~~~~~~-----~g~d~~~~~~~-~~~~~~~~~~~~~~~~~~DVi 75 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALE-GVQLGAALEREGSSL-----LGSDAGELAGA-GKTGVTVQSSLDAVKDDFDVF 75 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHST-TEECCCEECCTTCTT-----CSCCTTCSSSS-SCCSCCEESCSTTTTTSCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecccchh-----ccchhhhhhcc-ccCCceeeccHHHHhcccceE
Confidence 3589999995 999999999998764 25554 445543100 01110000011 123456778888888899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
|=.+....+.+.++.... .+..+|.-++|+..+.. +.+++. .. ...++..|++..
T Consensus 76 IDFs~p~~~~~~~~~a~~---~~~~~ViGTTG~~~~~~----~~i~~~-a~---~ipi~~apN~Sl 130 (162)
T d1diha1 76 IDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAGK----QAIRDA-AA---DIAIVFAANFSM 130 (162)
T ss_dssp EECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHHH----HHHHHH-TT---TSCEEECSCCCH
T ss_pred EEeccHHHHHHHHHHHHh---ccceeEEecCCCcHHHH----HHHHHH-cC---CCCEEEEccccH
Confidence 988887777666654443 36788888999986543 223332 21 134677787643
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.40 E-value=7.6e-05 Score=65.43 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=68.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC---CCC----------CCceEE--eC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE---QKL----------PENVIA--TT 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~---~~l----------~~~i~a--~~ 191 (460)
.-||.|||+|..|..-++....-| ..|+++|.+.+..+++.+.+........ ... ...... ..
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 359999999999998888888878 8999999999888888876532111100 000 000000 01
Q ss_pred CHHhhcCCCcEEEEccch--hcHHH-HHHHhhhcCCCCCeEEEec
Q 012596 192 DAKTALLGADYCLHAMPV--QFSSS-FLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 192 ~~~ea~~~aDiVilaVp~--~~~~~-vl~~i~~~l~~~~iIV~~~ 233 (460)
.+.+.+.++|+||.++-- ..... +-+++.+.+++|.+||+++
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 233456799999988742 22222 2245667789999999985
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.40 E-value=0.0006 Score=59.37 Aligned_cols=108 Identities=9% Similarity=0.117 Sum_probs=68.7
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCC---C--CeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKS---Q--LKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~---~--~~V~v~~r~~~--~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+++..||+|+|+ |.+|..++..|+.... . .++.++|.+.. .++.+.-+-... ...+...+..+++..+
T Consensus 21 ~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~----a~~~~~~~~~~~~~~~ 96 (175)
T d7mdha1 21 WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS----LYPLLREVSIGIDPYE 96 (175)
T ss_dssp CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT----TCTTEEEEEEESCHHH
T ss_pred cCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc----ccccccCccccccchh
Confidence 344579999996 9999999999997542 1 25667776553 333322110000 1112234567788888
Q ss_pred hcCCCcEEEEccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 196 ALLGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 196 a~~~aDiVilaVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+++++|+||++--. . .++++.+.|.++.+++..|+..+|-
T Consensus 97 ~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NP 152 (175)
T d7mdha1 97 VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 152 (175)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred hccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCc
Confidence 99999999997621 1 1344556677777777777777773
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.36 E-value=0.00047 Score=62.20 Aligned_cols=84 Identities=10% Similarity=0.186 Sum_probs=58.1
Q ss_pred CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
+.-||||||+|.||.. +...+.... +.+|+ ++|+++++++.+.+. +.. +..+...+|.+++++ +.
T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~~-~~~ivav~d~~~~~a~~~~~~~~i~---------~~~~~~~~d~~ell~~~~i 101 (221)
T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGCQ-HSRIEALVSGNAEKAKIVAAEYGVD---------PRKIYDYSNFDKIAKDPKI 101 (221)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCS-SEEEEEEECSCHHHHHHHHHHTTCC---------GGGEECSSSGGGGGGCTTC
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhCC-CceEEEEecCCHHHHHHHHHhhccc---------cccccccCchhhhcccccc
Confidence 3469999999999974 555555442 26666 889999988887664 221 112344567888775 58
Q ss_pred cEEEEccchhcHHHHHHHh
Q 012596 201 DYCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i 219 (460)
|+|++++|.....+++...
T Consensus 102 D~V~I~tp~~~H~~~~~~a 120 (221)
T d1h6da1 102 DAVYIILPNSLHAEFAIRA 120 (221)
T ss_dssp CEEEECSCGGGHHHHHHHH
T ss_pred eeeeeccchhhhhhHHHHh
Confidence 9999999987765554443
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.33 E-value=0.00015 Score=69.98 Aligned_cols=98 Identities=12% Similarity=0.185 Sum_probs=68.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..+..-+..+..--.-.+|.+|+|++++.+++.++-.. .....+.+++++++++++||+|++|
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~-------~~g~~v~~~~s~~eav~~ADIi~t~ 200 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE-------YSGLTIRRASSVAEAVKGVDIITTV 200 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT-------CTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh-------ccCCCceecCCHHHHHhcCCceeec
Confidence 478999999999998888776432126899999999988877654211 0112466788999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+.+.....++. ...+++|+.|..+.
T Consensus 201 Tas~s~~Pv~~--~~~l~pG~hI~aiG 225 (340)
T d1x7da_ 201 TADKAYATIIT--PDMLEPGMHLNAVG 225 (340)
T ss_dssp CCCSSEEEEEC--GGGCCTTCEEEECS
T ss_pred cccCCCCcccc--hhhcCCCCEEeecc
Confidence 86543222221 24678888776653
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.20 E-value=0.002 Score=51.52 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=58.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||+|.+|..-++.|.+.| .+|++++.... ....+.+.+. .... .-.-+. +.+.++++|+.
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~g--a~v~v~~~~~~~~~~~~~~~~~-i~~~---------~~~~~~-~dl~~~~lv~~ 78 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFIPQFTVWANEGM-LTLV---------EGPFDE-TLLDSCWLAIA 78 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCCHHHHHHHTTTS-CEEE---------ESSCCG-GGGTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCChHHHHHHhcCC-ceee---------ccCCCH-HHhCCCcEEee
Confidence 589999999999999999999999 99999987653 2333333321 1100 000122 33678999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++....+..-+-... ++..++|++.
T Consensus 79 at~d~~~n~~i~~~a---~~~~ilVNv~ 103 (113)
T d1pjqa1 79 ATDDDTVNQRVSDAA---ESRRIFCNVV 103 (113)
T ss_dssp CCSCHHHHHHHHHHH---HHTTCEEEET
T ss_pred cCCCHHHHHHHHHHH---HHcCCEEEeC
Confidence 988776644332222 2335667654
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.001 Score=56.11 Aligned_cols=96 Identities=9% Similarity=0.110 Sum_probs=58.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G-~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+||||||+ |.+|.-|...|.+.. + ..+++.+..++. .|..+.+... .. ......+. +...++|++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s-------~g~~~~~~~~-~~--~~~~~~~~-~~~~~~Div 69 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL-------GQAAPSFGGT-TG--TLQDAFDL-EALKALDII 69 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST-------TSBCCGGGTC-CC--BCEETTCH-HHHHTCSEE
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccc-------ccccccccCC-ce--eeecccch-hhhhcCcEE
Confidence 469999997 999999998776542 1 235666666542 1211111111 01 01111233 346799999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+|+|......+...+.+. ..+.++|+.+.
T Consensus 70 F~a~~~~~s~~~~~~~~~~-g~~~~VID~Ss 99 (146)
T d1t4ba1 70 VTCQGGDYTNEIYPKLRES-GWQGYWIDAAS 99 (146)
T ss_dssp EECSCHHHHHHHHHHHHHT-TCCCEEEECSS
T ss_pred EEecCchHHHHhhHHHHhc-CCCeecccCCc
Confidence 9999998887777766552 23467888875
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.16 E-value=0.00065 Score=53.12 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=51.3
Q ss_pred ccCCCeEEEECcchHH-HHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFG-TAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG-~~~A~~La~~G~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|.+.+||=|||.|-.| +++|..|.+.| ++|+.+|+.. ...+.+.+.|.. +..-.+.+ -+.++|
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G--~~VsGSD~~~~~~~~~L~~~Gi~------------v~~g~~~~-~i~~~d 69 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEG--YQISGSDIADGVVTQRLAQAGAK------------IYIGHAEE-HIEGAS 69 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHT--CEEEEEESCCSHHHHHHHHTTCE------------EEESCCGG-GGTTCS
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCC--CEEEEEeCCCChhhhHHHHCCCe------------EEECCccc-cCCCCC
Confidence 4567899999999999 77899999999 9999999863 456777777642 12222333 357889
Q ss_pred EEEEcc
Q 012596 202 YCLHAM 207 (460)
Q Consensus 202 iVilaV 207 (460)
+||.+-
T Consensus 70 ~vV~S~ 75 (96)
T d1p3da1 70 VVVVSS 75 (96)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 988753
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.15 E-value=0.00085 Score=54.32 Aligned_cols=97 Identities=12% Similarity=0.219 Sum_probs=69.5
Q ss_pred CeEEEEC----cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 128 NKVVVLG----GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIG----aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
++|+||| .|..|..+.+.|.+.| ++|+.++.+.+.+ .++.+..++.++-+..|++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g--~~V~pVnP~~~~i-------------------~G~~~y~sl~~lp~~~D~v 60 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG--FEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVDVI 60 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT--CEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCCEE
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC--CEEEEEccccccc-------------------cCccccccchhccccceEE
Confidence 5799999 4789999999999999 8888776543211 1244556787766678999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHH
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA 251 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~ 251 (460)
++++|...+.+++++.... |...+-++.|...+ .+.+.+++.
T Consensus 61 vi~vp~~~~~~~l~~~~~~---g~k~v~~~~g~~~~---~~~~~a~~~ 102 (116)
T d1y81a1 61 VFVVPPKVGLQVAKEAVEA---GFKKLWFQPGAESE---EIRRFLEKA 102 (116)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCCEEEECTTSCCH---HHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHhc---CCceEEeccchhhH---HHHHHHHHc
Confidence 9999999999998887653 33345567776654 344555543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.11 E-value=0.00055 Score=58.97 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=51.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.+||.|||+|.+|.+++..|.+.|. .+|++++|+.++++.+.+.-. .....+.. ..++|+||-
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~-~~I~I~nR~~~ka~~L~~~~~-------------~~~~~~~~--~~~~DliIN 79 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAALYG-------------YAYINSLE--NQQADILVN 79 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHHHT-------------CEEESCCT--TCCCSEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecccHHHHHHHHHhhh-------------hhhhhccc--ccchhhhee
Confidence 45789999999999999999999983 379999999999888876421 11111221 257899999
Q ss_pred ccch
Q 012596 206 AMPV 209 (460)
Q Consensus 206 aVp~ 209 (460)
|+|.
T Consensus 80 aTpi 83 (167)
T d1npya1 80 VTSI 83 (167)
T ss_dssp CSST
T ss_pred cccc
Confidence 9984
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.09 E-value=0.0024 Score=52.95 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=66.6
Q ss_pred eEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCcEEEE
Q 012596 129 KVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH 205 (460)
Q Consensus 129 kI~IIG-aG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVil 205 (460)
||+|+| .|.||..++..+.+.. ++++. .+|+.. ++.. ...++|+||=
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~-~~~l~~~~d~~~-----------------------------~~~~~~~~~~DvvID 50 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAAD-DLTLSAELDAGD-----------------------------PLSLLTDGNTEVVID 50 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST-TSEEEEEECTTC-----------------------------CTHHHHTTTCSEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCC-----------------------------chhhhccccCCEEEE
Confidence 799999 5999999999887654 25655 334321 1111 1257899998
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
.+....+.+.++.... .+..+|.-++|+..+..+.+.+.+.+ . ....++..|++..
T Consensus 51 FS~p~~~~~~~~~~~~---~~~~~ViGTTG~~~~~~~~l~~~~~~--~---~~ipil~apNfSl 106 (135)
T d1yl7a1 51 FTHPDVVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVA--K---PNTSVLIAPNFTS 106 (135)
T ss_dssp CCCTTTHHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHS--C---TTCEEEECSCCGG
T ss_pred cccHHHHHHHHHHHHh---cCCCEEEeccccchhHHHHHHHHHHh--c---CCCCEEEcCCccH
Confidence 8877777776665544 46788888999987654343333221 1 1346788887653
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00043 Score=53.60 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.+||+|+|+|..|.+.|+.|.+.| .+|++||.+.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g--~~v~~~D~~~ 38 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRM 38 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTT--CCCEEEESSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCC--CEEEEeeCCc
Confidence 3578999999999999999999999 9999999754
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.07 E-value=0.00056 Score=57.28 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=69.5
Q ss_pred hccCCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 123 ILERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 123 ~~~~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
++.+.++|+|||+ |.+|..+...|.+.| ++|+.++.....+ .+..+..++.+.-.
T Consensus 15 ~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g--~~v~pVnP~~~~i-------------------~G~~~~~sl~dlp~ 73 (139)
T d2d59a1 15 ILTRYKKIALVGASPKPERDANIVMKYLLEHG--YDVYPVNPKYEEV-------------------LGRKCYPSVLDIPD 73 (139)
T ss_dssp HHHHCCEEEEETCCSCTTSHHHHHHHHHHHTT--CEEEEECTTCSEE-------------------TTEECBSSGGGCSS
T ss_pred HHhcCCeEEEEeecCCCCCchHHHHHHHHHCC--CEEEEECCccccc-------------------CCCcccccccccCc
Confidence 4445678999996 579999999999999 8988887643100 12345567877666
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
..|++++++|...+.++++++... +...+.++.|...+
T Consensus 74 ~iD~v~i~vp~~~~~~~~~e~~~~---g~k~v~~~~G~~~e 111 (139)
T d2d59a1 74 KIEVVDLFVKPKLTMEYVEQAIKK---GAKVVWFQYNTYNR 111 (139)
T ss_dssp CCSEEEECSCHHHHHHHHHHHHHH---TCSEEEECTTCCCH
T ss_pred cceEEEEEeCHHHHHHHHHHHHHh---CCCEEEEeccccCH
Confidence 789999999999999999887653 34456677776654
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.99 E-value=0.00029 Score=59.39 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.|||||||+ |..|.-+.+.|.+..+ ..++.++..+.. .|....+. ...+...+...+...++|++|
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~-------~Gk~i~~~-----~~~~~~~~~~~~~~~~~d~vf 69 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES-------AGQRMGFA-----ESSLRVGDVDSFDFSSVGLAF 69 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT-------TTCEEEET-----TEEEECEEGGGCCGGGCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc-------CCcceeec-----cccchhccchhhhhccceEEE
Confidence 489999996 9999999999986542 357776654432 12211110 011122211223457899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+|..........+.. .+..||+.+.-+
T Consensus 70 ~a~p~~~s~~~~~~~~~---~g~~VID~Ss~f 98 (144)
T d2hjsa1 70 FAAAAEVSRAHAERARA---AGCSVIDLSGAL 98 (144)
T ss_dssp ECSCHHHHHHHHHHHHH---TTCEEEETTCTT
T ss_pred ecCCcchhhhhcccccc---CCceEEeechhh
Confidence 99998877666655543 578999987643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0031 Score=53.90 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=64.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-------
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------- 197 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------- 197 (460)
...+|.|+|+|.+|...+..+...| . +|+++++++++++..++.|....+... ..+..+..
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~---------~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGADLVLQIS---------KESPQEIARKVEGQL 94 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCSEEEECS---------SCCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCCHHHHHHHHHhCCccccccc---------ccccccccccccccC
Confidence 3568999999999999998888888 5 799999999999888777653211100 01222211
Q ss_pred -CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 198 -LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 198 -~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
..+|+||-|+..... ++...+.++++..++.+.
T Consensus 95 g~g~Dvvid~~G~~~~---~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 95 GCKPEVTIECTGAEAS---IQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp TSCCSEEEECSCCHHH---HHHHHHHSCTTCEEEECS
T ss_pred CCCceEEEeccCCchh---HHHHHHHhcCCCEEEEEe
Confidence 368999999987543 333445556666666553
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.90 E-value=0.0011 Score=53.57 Aligned_cols=34 Identities=15% Similarity=0.400 Sum_probs=31.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+||+|||+|.+|.-+|..|++.| .+|+++.|.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhcc--ccceeeehhc
Confidence 579999999999999999999998 9999999853
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.88 E-value=0.0041 Score=52.28 Aligned_cols=97 Identities=9% Similarity=0.086 Sum_probs=59.1
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G-~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
||||||| .|..|.-+.+.|.+.. + ..++..+..+.. .|..+.+.... . .+....+. +..+++|+||
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~-------~gk~~~~~~~~-~--~~~~~~~~-~~~~~~DvvF 69 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI-------GVPAPNFGKDA-G--MLHDAFDI-ESLKQLDAVI 69 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC-------SSBCCCSSSCC-C--BCEETTCH-HHHTTCSEEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc-------cccccccCCcc-e--eeecccch-hhhccccEEE
Confidence 7999999 6999999998877532 1 135555554321 12222211111 1 11112233 3468999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+|.....++...+.+. ..++++|+++.-+
T Consensus 70 ~alp~~~s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 70 TCQGGSYTEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp ECSCHHHHHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred EecCchHHHHHhHHHHHc-CCceEEEeCCccc
Confidence 999998888877776553 2346799988643
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.88 E-value=0.0013 Score=50.56 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=49.2
Q ss_pred CeEEEECcchHHH-HHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~-~~A~~La~~G~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||=|||.|-+|. ++|..|.+.| ++|+..|+.. +..++|.+.|....+ -.+.+ -+.++|+||.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G--~~VsGSD~~~~~~t~~L~~~Gi~i~~------------gh~~~-~i~~~d~vV~ 66 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNG--NDVYGSNIEETERTAYLRKLGIPIFV------------PHSAD-NWYDPDLVIK 66 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEECSSCCHHHHHHHHTTCCEES------------SCCTT-SCCCCSEEEE
T ss_pred cEEEEEeECHHHHHHHHHHHHhCC--CeEEEEeCCCChhHHHHHHCCCeEEe------------eeccc-ccCCCCEEEE
Confidence 7999999999997 7899999999 9999999875 467788888753211 11222 2567898887
Q ss_pred cc
Q 012596 206 AM 207 (460)
Q Consensus 206 aV 207 (460)
+-
T Consensus 67 Ss 68 (89)
T d1j6ua1 67 TP 68 (89)
T ss_dssp CT
T ss_pred ec
Confidence 53
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.88 E-value=0.00047 Score=61.86 Aligned_cols=36 Identities=39% Similarity=0.522 Sum_probs=32.7
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..+||+|||+|.+|.+.|..|+++| ++|++++|+.
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G--~~V~vier~~ 39 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKG--YSVHILARDL 39 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence 34579999999999999999999999 9999999864
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.87 E-value=0.00097 Score=55.00 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=66.7
Q ss_pred CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
..++|+|||+ |.+|..+.++|.+.| ..+|+.++...+.+ .++....++.++-...|
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~i-------------------~G~~~y~sl~dlp~~vD 66 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEEV-------------------QGVKAYKSVKDIPDEID 66 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSEE-------------------TTEECBSSTTSCSSCCS
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcccc-------------------CCeEeecchhhcCCCCc
Confidence 4589999997 899999999998755 46888887654211 13445567777666789
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
++++++|...+.+++++..+.= -..++.++.|+..
T Consensus 67 lvvi~vp~~~~~~~~~~~~~~g--~~~~vi~s~Gf~e 101 (129)
T d2csua1 67 LAIIVVPKRFVKDTLIQCGEKG--VKGVVIITAGFGE 101 (129)
T ss_dssp EEEECSCHHHHHHHHHHHHHHT--CCEEEECCCSSTT
T ss_pred eEEEecChHHhHHHHHHHHHcC--CCEEEEecccccc
Confidence 9999999999999998876531 1245566777754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.83 E-value=0.0022 Score=54.71 Aligned_cols=96 Identities=9% Similarity=0.054 Sum_probs=63.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh---h-----c
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---A-----L 197 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e---a-----~ 197 (460)
...+|.|+|+|.+|...+..+...| .+|+++++++++.+.+++.|....+..+.. ..+..+ . -
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~-------~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGADVTLVVDPA-------KEEESSIIERIRSAIG 96 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEECCTT-------TSCHHHHHHHHHHHSS
T ss_pred CCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHcCCcEEEecccc-------ccccchhhhhhhcccc
Confidence 3578999999999999988888888 899999999999988887765321110000 011111 1 1
Q ss_pred CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
..+|+||-|+..... ++...+.++++..++.+.
T Consensus 97 ~g~D~vid~~g~~~~---~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 97 DLPNVTIDCSGNEKC---ITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SCCSEEEECSCCHHH---HHHHHHHSCTTCEEEECS
T ss_pred cCCceeeecCCChHH---HHHHHHHHhcCCceEEEe
Confidence 358999999986542 233334556666666553
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.0027 Score=55.14 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=61.1
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|+||||+| .|..|.-+.+.|.++- ..++..+..+...-+.+.+... .......+ ...+.++..+++|+||+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP-~~ei~~l~s~~~aG~~i~~~~p--~~~~~~~~-----~~~~~~~~~~~~dvvf~ 72 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHP-EAKITYLSSRTYAGKKLEEIFP--STLENSIL-----SEFDPEKVSKNCDVLFT 72 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCT-TEEEEEEECSTTTTSBHHHHCG--GGCCCCBC-----BCCCHHHHHHHCSEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC-CceEEEeeccccCCCcccccCc--hhhccccc-----cccCHhHhccccceEEE
Confidence 68999999 7999999999998764 3566655444322222222110 00111111 11355665668999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
|+|.....+.... . .+..||+++.-+-.
T Consensus 73 a~p~~~s~~~~~~----~-~~~~VIDlSadfRl 100 (176)
T d1vkna1 73 ALPAGASYDLVRE----L-KGVKIIDLGADFRF 100 (176)
T ss_dssp CCSTTHHHHHHTT----C-CSCEEEESSSTTTC
T ss_pred ccccHHHHHHHHh----h-ccceEEecCccccc
Confidence 9998766554432 2 46789999876544
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=96.80 E-value=0.0027 Score=57.55 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=53.9
Q ss_pred CCCeEEEECcchHHHHHHH----HHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--
Q 012596 126 RTNKVVVLGGGSFGTAMAA----HVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-- 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~----~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-- 198 (460)
+.+||||||+|.+|+.++. .+.+...+.+|+ +++++++.++.+.+... . ......++.+++++
T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~---------~-~~~~~~~~~~~l~~~~ 84 (237)
T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ---------L-KHATGFDSLESFAQYK 84 (237)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT---------C-TTCEEESCHHHHHHCT
T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc---------c-ccceeecchhhccccc
Confidence 4589999999986554443 344332226766 78999988877765421 0 12345578888764
Q ss_pred CCcEEEEccchhcHHHHHH
Q 012596 199 GADYCLHAMPVQFSSSFLE 217 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~ 217 (460)
+.|+|++|+|.....+...
T Consensus 85 ~iD~V~i~tp~~~h~~~~~ 103 (237)
T d2nvwa1 85 DIDMIVVSVKVPEHYEVVK 103 (237)
T ss_dssp TCSEEEECSCHHHHHHHHH
T ss_pred ccceeeccCCCcchhhHHH
Confidence 5799999999876554443
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.75 E-value=0.0011 Score=63.19 Aligned_cols=93 Identities=9% Similarity=0.070 Sum_probs=65.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..+..-...|...-.-.+|.+|+|++++.+.+.+.-.. ..+.+..++++++.+||+|+.|
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~----------~~~~~~~~~~~a~~~aDiV~ta 194 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED----------RGISASVQPAEEASRCDVLVTT 194 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH----------TTCCEEECCHHHHTSSSEEEEC
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHh----------cCCccccchhhhhccccEEEEe
Confidence 468999999999999999887643225899999999988777653210 0122333566778999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++..- ++ -.+.+++|+.|..+.
T Consensus 195 T~s~~P--~~--~~~~l~~G~hv~~iG 217 (320)
T d1omoa_ 195 TPSRKP--VV--KAEWVEEGTHINAIG 217 (320)
T ss_dssp CCCSSC--CB--CGGGCCTTCEEEECS
T ss_pred ccCccc--cc--chhhcCCCCeEeecC
Confidence 996431 11 024578888777654
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.69 E-value=0.0017 Score=54.03 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=68.0
Q ss_pred ccCCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012596 124 LERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (460)
Q Consensus 124 ~~~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~ 199 (460)
+...++|+|||+ |.+|..+...|.+.| ++++.+..++. +.. . .+..+..++.+.-..
T Consensus 10 L~~pksIAVVGaS~~~~k~g~~v~~~L~~~g--~~~~~v~~~~~--------~~~---i------~g~~~~~~l~~i~~~ 70 (136)
T d1iuka_ 10 LSQAKTIAVLGAHKDPSRPAHYVPRYLREQG--YRVLPVNPRFQ--------GEE---L------FGEEAVASLLDLKEP 70 (136)
T ss_dssp HHHCCEEEEETCCSSTTSHHHHHHHHHHHTT--CEEEEECGGGT--------TSE---E------TTEECBSSGGGCCSC
T ss_pred HhCCCeEEEEeecCCCCCchHHHHHHHhcCC--CCceEEEeccc--------cce---e------eceecccchhhccCC
Confidence 434578999997 789999999999999 89999887542 100 0 124455677776667
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
.|++++++|+..+.+++++.... ..+. +-++.|...+
T Consensus 71 iD~v~v~~p~~~v~~~v~~~~~~-g~k~--i~~q~G~~~~ 107 (136)
T d1iuka_ 71 VDILDVFRPPSALMDHLPEVLAL-RPGL--VWLQSGIRHP 107 (136)
T ss_dssp CSEEEECSCHHHHTTTHHHHHHH-CCSC--EEECTTCCCH
T ss_pred CceEEEeccHHHHHHHHHHHHhh-CCCe--EEEecCccCH
Confidence 89999999999888888876553 2233 4457787654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.63 E-value=0.0033 Score=55.69 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=61.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi 204 (460)
+.++|+|-|.|++|..+|..|.+.| .+|+++|.+.+.++.....|. ... +.++.+ .+||+++
T Consensus 26 ~gk~v~IqG~G~VG~~~A~~L~~~G--akvvv~d~d~~~~~~~~~~g~--------------~~~-~~~~~~~~~~DI~i 88 (201)
T d1c1da1 26 DGLTVLVQGLGAVGGSLASLAAEAG--AQLLVADTDTERVAHAVALGH--------------TAV-ALEDVLSTPCDVFA 88 (201)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EEC-CGGGGGGCCCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEecchHHHHHHHHhhcc--------------ccc-Cccccccccceeee
Confidence 4589999999999999999999999 999999999988777665442 111 334444 3799888
Q ss_pred Eccchhc-HHHHHHHhhhcCCCCCeEEEeccC
Q 012596 205 HAMPVQF-SSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 205 laVp~~~-~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
-|--... ..+.++.| + -.+|+...|+
T Consensus 89 PcA~~~~I~~~~a~~i----~-ak~i~e~AN~ 115 (201)
T d1c1da1 89 PCAMGGVITTEVARTL----D-CSVVAGAANN 115 (201)
T ss_dssp ECSCSCCBCHHHHHHC----C-CSEECCSCTT
T ss_pred cccccccccHHHHhhh----h-hheeeccCCC
Confidence 6644433 44555554 2 2466666664
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.56 E-value=0.0031 Score=54.62 Aligned_cols=103 Identities=14% Similarity=0.200 Sum_probs=62.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEE-eCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYML-MRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~-~r~~--~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|+||+||| .|..|.-+.+.|..+. ..++... .+.. ..-+.+...... +.+. .........+......++|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP-~~ei~~l~~~s~~~~aGk~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~dv 75 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHP-HMTITALTVSAQSNDAGKLISDLHPQ---LKGI-VDLPLQPMSDVRDFSADVDV 75 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCT-TEEEEEEEEETTCTTTTCBHHHHCGG---GTTT-CCCBEEEESCGGGTCTTCCE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCC-CCceEeeEeecccccccccccccccc---cccc-cccccccchhhhhhhcccce
Confidence 68999999 8999999999999863 2566533 3321 111111111100 0000 01123334455555678999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+|+|+|.....+....+.+ .+..+|+++.-.-
T Consensus 76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSadfR 107 (179)
T d2g17a1 76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSGAFR 107 (179)
T ss_dssp EEECSCHHHHHHHHHHHHH---TTCEEEECSSTTS
T ss_pred eeccccchhHHHHhhhhhh---cCceeeccccccc
Confidence 9999998877666655543 5788999886543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.013 Score=48.77 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=57.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh----hcCCCccCCCCCCCCceEEeCCH---H-hhcCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE----KHCNCRYFPEQKLPENVIATTDA---K-TALLG 199 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~----~g~~~~~~~~~~l~~~i~a~~~~---~-ea~~~ 199 (460)
-.|.|+|.|.+|..++..|.+.| .+|++++.+++......+ .|.... .++. +++ + .-+++
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~--~~v~vId~d~~~~~~~~~~~~~~~~~vi-~Gd~---------~d~~~L~~a~i~~ 71 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRG--QNVTVISNLPEDDIKQLEQRLGDNADVI-PGDS---------NDSSVLKKAGIDR 71 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHCTTCEEE-ESCT---------TSHHHHHHHTTTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CCEEEEeccchhHHHHHHHhhcCCcEEE-EccC---------cchHHHHHhcccc
Confidence 46999999999999999999998 899999998765433222 222110 0110 122 1 22568
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.||++++.+...-.+-...+.+.++..+|...
T Consensus 72 a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~ 105 (153)
T d1id1a_ 72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred CCEEEEccccHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9999999997654332222233333444444433
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.30 E-value=0.0036 Score=54.35 Aligned_cols=86 Identities=12% Similarity=0.162 Sum_probs=50.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEE-eCCHH-HHHHHHhhcCCCccCCCCC--C-CCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MRDPA-VCQSINEKHCNCRYFPEQK--L-PENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~-~r~~~-~~~~l~~~g~~~~~~~~~~--l-~~~i~a~~~~~ea~~~aD 201 (460)
|.||||.|.|+||..+.+.+.+++ +.+|+.+ ++.+. ....+...+.......+.. + ...+.+..+..++..++|
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~-dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vD 79 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQP-DMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD 79 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred CeEEEEECCCHHHHHHHHHHHhCC-CCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCC
Confidence 469999999999999999999875 3677655 44433 3333333321110000000 0 011222335566667889
Q ss_pred EEEEccchhcHH
Q 012596 202 YCLHAMPVQFSS 213 (460)
Q Consensus 202 iVilaVp~~~~~ 213 (460)
+||-|++.....
T Consensus 80 iViecTG~f~~~ 91 (178)
T d1b7go1 80 IVVDTTPNGVGA 91 (178)
T ss_dssp EEEECCSTTHHH
T ss_pred EEEECCCCcCCH
Confidence 999999875443
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=96.26 E-value=0.0017 Score=61.64 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=34.0
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|..++||+|||+|.-|.++|..|++.|..++|+++.++.
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 445789999999999999999999877557999999986
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.23 E-value=0.0015 Score=59.09 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=31.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|||+|||+|.-|...|..|+++| ++|+++.+++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G--~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence 78999999999999999999999 9999999865
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.00055 Score=59.76 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=61.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh---h-cCCCccCCCCCCCCceEEe--C---CHHhh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE---K-HCNCRYFPEQKLPENVIAT--T---DAKTA 196 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~---~-g~~~~~~~~~~l~~~i~a~--~---~~~ea 196 (460)
+.++|.|||+|.+|.+++..|.+.|. .++++++|+++..+++.. + +.+ .+..+... . +..+.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 87 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNEN--------TDCVVTVTDLADQQAFAEA 87 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHH--------SSCEEEEEETTCHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhh--------cCcceEeeecccccchhhh
Confidence 35799999999999999999999883 589999998765543322 1 100 00011111 1 23344
Q ss_pred cCCCcEEEEccchhcHHHHHHHh---hhcCCCCCeEEEec
Q 012596 197 LLGADYCLHAMPVQFSSSFLEGI---SDYVDPGLPFISLS 233 (460)
Q Consensus 197 ~~~aDiVilaVp~~~~~~vl~~i---~~~l~~~~iIV~~~ 233 (460)
+.++|+||-|+|.......-+.+ ...++++.+++++.
T Consensus 88 ~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~ 127 (182)
T d1vi2a1 88 LASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECV 127 (182)
T ss_dssp HHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred hcccceeccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence 57899999999953221000111 23466777888875
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.01 E-value=0.0033 Score=50.36 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=32.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.++|.|||+|.+|.-+|..|++.| .+|+++.|.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G--~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred CCeEEEECCCccceeeeeeecccc--cEEEEEEecce
Confidence 579999999999999999999999 99999987653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.98 E-value=0.0045 Score=53.38 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=39.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHC 173 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~ 173 (460)
...+|.|+|+|.+|......+...| . +|++.++++++.+.+++.|.
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEECCCccchhheecccccc--cccccccccccccccccccccc
Confidence 4578999999999998888888777 6 79999999999888877664
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.97 E-value=0.0053 Score=52.87 Aligned_cols=101 Identities=16% Similarity=0.289 Sum_probs=61.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++|.|||+|.++.+++..|.+.| +|++++|+.++++.+.+.-.. .+.. .....+.. .+......++|++|-
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~-~~~~--~~~~~~~~-~~~~~~~~~~dliIn 89 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAE-KLNK--KFGEEVKF-SGLDVDLDGVDIIIN 89 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHH-HHTC--CHHHHEEE-ECTTCCCTTCCEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHH-hhch--hhhhhhhh-hhhhhccchhhhhcc
Confidence 4579999999999999999997654 899999999988776542100 0000 00001222 244455678999999
Q ss_pred ccchhcHHHHHHH--h-hhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEG--I-SDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~--i-~~~l~~~~iIV~~~ 233 (460)
|+|.......-.. + ...+.++.+++++.
T Consensus 90 ~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~ 120 (177)
T d1nvta1 90 ATPIGMYPNIDVEPIVKAEKLREDMVVMDLI 120 (177)
T ss_dssp CSCTTCTTCCSSCCSSCSTTCCSSSEEEECC
T ss_pred CCcccccccccccchhhhhccCcccceeeec
Confidence 9996432110000 1 12344566677764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0035 Score=50.76 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++++|||+|.+|.-+|..|++.| .+|+++.+.+
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG--~~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQP 56 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhC--cceeEEEecc
Confidence 579999999999999999999999 9999998765
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.91 E-value=0.0031 Score=55.10 Aligned_cols=79 Identities=20% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|.|.| .|.+|..+|..|++.| .+|++.+|+.++.+.+.+.-....... ..+..+...++.++++.+.|++|
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~iDili 97 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKLDKAQAAADSVNKRFKVN--VTAAETADDASRAEAVKGAHFVF 97 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHHTCC--CEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhc--cchhhcccchHHHHHHHHHHHhccchh--hhhhhcccHHHHHHHhcCcCeee
Confidence 458899999 6999999999999999 999999999988766654311000000 00000000123445567788888
Q ss_pred Eccc
Q 012596 205 HAMP 208 (460)
Q Consensus 205 laVp 208 (460)
.+..
T Consensus 98 n~Ag 101 (191)
T d1luaa1 98 TAGA 101 (191)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 7654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.85 E-value=0.0033 Score=54.07 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~ 163 (460)
.+||+|||+|..|...|..|++.| + +|+++++.+.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G--~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLG--YSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCC--CCeEEEEEecCc
Confidence 579999999999999999999999 6 6999998763
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.85 E-value=0.003 Score=56.80 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=31.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+||+|||+|.-|...|..|+++| ++|+++++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G--~~v~v~Er~~ 37 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSP 37 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence 479999999999999999999999 9999999864
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.84 E-value=0.0028 Score=54.30 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=47.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiV 203 (460)
..+||+|||+|.||...+..|.+......+.+++..... ... ...... ..+.++++. +.|+|
T Consensus 6 ~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-------~~~--------~~~~~~-~~~~~e~l~~~~iD~V 69 (172)
T d1lc0a1 6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-------ELG--------SLDEVR-QISLEDALRSQEIDVA 69 (172)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-------CCC--------EETTEE-BCCHHHHHHCSSEEEE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-------HHH--------HhhccC-cCCHHHHHhCCCcchh
Confidence 357999999999999998888754211234455433210 000 001112 235677654 67999
Q ss_pred EEccchhcHHHHHHHhhh
Q 012596 204 LHAMPVQFSSSFLEGISD 221 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~ 221 (460)
++++|.....+++....+
T Consensus 70 ~I~tp~~~H~~~~~~al~ 87 (172)
T d1lc0a1 70 YICSESSSHEDYIRQFLQ 87 (172)
T ss_dssp EECSCGGGHHHHHHHHHH
T ss_pred hhcccccccccccccccc
Confidence 999998776665544433
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.0041 Score=54.00 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=33.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+.+||+|||+|.-|...|..|+++| |+|++++++++
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G--~~Vtl~E~~~~ 77 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSE 77 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhc--cceEEEeccCc
Confidence 3589999999999999999999999 99999998763
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.71 E-value=0.004 Score=57.19 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=31.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+||+|||+|.-|...|..|+++| ++|+++++++
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G--~~V~vlE~~~ 63 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASE 63 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence 579999999999999999999999 9999999865
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.70 E-value=0.024 Score=45.71 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=59.1
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH---h-hcCCCcEEE
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK---T-ALLGADYCL 204 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~---e-a~~~aDiVi 204 (460)
.|.|+|.|.+|..++..|. | ++|.+++.+++..+.+...|....+ ++. ++.+ + -+.+|+.++
T Consensus 2 HivI~G~g~~g~~l~~~L~--~--~~i~vi~~d~~~~~~~~~~~~~~i~-Gd~---------~~~~~L~~a~i~~A~~vi 67 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--G--SEVFVLAEDENVRKKVLRSGANFVH-GDP---------TRVSDLEKANVRGARAVI 67 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--G--GGEEEEESCTTHHHHHHHTTCEEEE-SCT---------TSHHHHHHTTCTTCSEEE
T ss_pred EEEEECCCHHHHHHHHHHc--C--CCCEEEEcchHHHHHHHhcCccccc-ccc---------CCHHHHHHhhhhcCcEEE
Confidence 4889999999999999995 5 6789999999998888776642111 111 1221 1 256899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++++.+...-.+-...+.+.+...++...
T Consensus 68 ~~~~~d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 68 VNLESDSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp ECCSSHHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred EeccchhhhHHHHHHHHHHCCCceEEEEE
Confidence 99997654433322333334444444443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.64 E-value=0.0048 Score=58.22 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=32.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
++||+|||+|.-|...|..|++.| ++|+++.++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G--~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCC--CCEEEEECCC
Confidence 589999999999999999999998 9999999876
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.55 E-value=0.012 Score=49.63 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=39.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~ 173 (460)
+..+|.|+|+|.+|...+..+...| .+|++.++++++.+..++.|.
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhccCc
Confidence 4578999999999999888887777 899999999999888887764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.51 E-value=0.015 Score=49.59 Aligned_cols=93 Identities=10% Similarity=0.015 Sum_probs=58.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a 200 (460)
...+|.|+|+|.+|...+..+...|. ..|++.++++++.+..++.|........ ..+..+.+ ..+
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga~~~i~~~---------~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGATHVINSK---------TQDPVAAIKEITDGGV 97 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHTTSCE
T ss_pred CCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCCeEEEeCC---------CcCHHHHHHHHcCCCC
Confidence 45789999999999999988888772 3566778999888888887743111000 01232222 247
Q ss_pred cEEEEccchhcH-HHHHHHhhhcCCCCCeEEEe
Q 012596 201 DYCLHAMPVQFS-SSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 201 DiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~ 232 (460)
|+||-|+..... +..++ .++++..++.+
T Consensus 98 D~vid~~G~~~~~~~~~~----~~~~~G~i~~~ 126 (174)
T d1f8fa2 98 NFALESTGSPEILKQGVD----ALGILGKIAVV 126 (174)
T ss_dssp EEEEECSCCHHHHHHHHH----TEEEEEEEEEC
T ss_pred cEEEEcCCcHHHHHHHHh----cccCceEEEEE
Confidence 999999986543 33333 33444444443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.50 E-value=0.012 Score=50.48 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=59.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------CC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------LG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------~~ 199 (460)
+..+|.|+|+|.+|...+..+...|. ..|++.++++++.+..++.|........ ..+..+.+ ..
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa~~~i~~~---------~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGATDILNYK---------NGHIEDQVMKLTNGKG 96 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTCSEEECGG---------GSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhhCcccccccc---------chhHHHHHHHHhhccC
Confidence 45789999999999988777777772 3699999999988888877742110000 01222211 24
Q ss_pred CcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEe
Q 012596 200 ADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 200 aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+|+||-|+.... ++..++-+ +++..++.+
T Consensus 97 ~D~vid~~g~~~~~~~a~~~~----~~~G~iv~~ 126 (174)
T d1jqba2 97 VDRVIMAGGGSETLSQAVKMV----KPGGIISNI 126 (174)
T ss_dssp EEEEEECSSCTTHHHHHHHHE----EEEEEEEEC
T ss_pred cceEEEccCCHHHHHHHHHHH----hcCCEEEEE
Confidence 899999998655 34444333 445555543
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0095 Score=47.45 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=34.2
Q ss_pred hhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
++.....||+|||.|..|..|+....+-| ++|+++|.+++
T Consensus 6 ~~~~~~~kigIlGgGQL~rMla~aA~~lG--~~v~v~d~~~~ 45 (111)
T d1kjqa2 6 ALRPAATRVMLLGSGELGKEVAIECQRLG--VEVIAVDRYAD 45 (111)
T ss_dssp TTSTTCCEEEEESCSHHHHHHHHHHHTTT--CEEEEEESSTT
T ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHCC--CEEEEEcCCCC
Confidence 34434579999999999999999999988 99999998863
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.45 E-value=0.0054 Score=55.05 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+||+|||+|.-|...|..|+++| ++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G--~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence 68999999999999999999999 9999999765
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.01 Score=50.36 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=60.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---HhhcCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea~~~aDi 202 (460)
...+|.|+|+|.+|...+..+...| .++++.++++++.+.+++.|....+ ...+. ....+..|+
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~lGad~~i-----------~~~~~~~~~~~~~~~D~ 96 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKALGADEVV-----------NSRNADEMAAHLKSFDF 96 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHTCSEEE-----------ETTCHHHHHTTTTCEEE
T ss_pred CCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhccCCcEEE-----------ECchhhHHHHhcCCCce
Confidence 4578999999999998887777777 8899999998888777777643110 11111 222356899
Q ss_pred EEEccchhc-HHHHHHHhhhcCCCCCeEEEe
Q 012596 203 CLHAMPVQF-SSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 203 VilaVp~~~-~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+|-++.... +...++ .++++-.++.+
T Consensus 97 vid~~g~~~~~~~~~~----~l~~~G~iv~~ 123 (168)
T d1uufa2 97 ILNTVAAPHNLDDFTT----LLKRDGTMTLV 123 (168)
T ss_dssp EEECCSSCCCHHHHHT----TEEEEEEEEEC
T ss_pred eeeeeecchhHHHHHH----HHhcCCEEEEe
Confidence 999998654 444433 33444455544
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.44 E-value=0.012 Score=50.56 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=51.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHH-HHHHHHhhcCCCccCCCCC---C-CCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPA-VCQSINEKHCNCRYFPEQK---L-PENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~-~~~~l~~~g~~~~~~~~~~---l-~~~i~a~~~~~ea~~~a 200 (460)
.+||||.|.|+||..+.+.+.+.. +.+|+ +.+.++. .+..+.+.+.......... + ..++....+..++.+++
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~-dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQD-DMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV 80 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred cEEEEEECCCHHHHHHHHHHHhCC-CceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence 479999999999999999998764 35655 4455443 3334444332111000000 0 00111223456666789
Q ss_pred cEEEEccchhcHHHH
Q 012596 201 DYCLHAMPVQFSSSF 215 (460)
Q Consensus 201 DiVilaVp~~~~~~v 215 (460)
|+|+-|++..-..+-
T Consensus 81 DvViEcTG~f~~~~~ 95 (172)
T d2czca2 81 DIIVDATPGGIGAKN 95 (172)
T ss_dssp SEEEECCSTTHHHHH
T ss_pred CEEEECCCCCCCHHH
Confidence 999999997665443
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.011 Score=50.36 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=56.4
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||-+. +|.+++..|.+.| ..|++++... .++.+..+++|+||
T Consensus 36 ~GK~v~VIGrS~~VG~Pla~lL~~~g--atVt~~h~~t----------------------------~~l~~~~~~ADivI 85 (166)
T d1b0aa1 36 FGLNAVVIGASNIVGRPMSMELLLAG--CTTTVTHRFT----------------------------KNLRHHVENADLLI 85 (166)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTT--CEEEEECSSC----------------------------SCHHHHHHHCSEEE
T ss_pred ccceEEEEeccccccHHHHHHHHHhh--cccccccccc----------------------------chhHHHHhhhhHhh
Confidence 468999999877 9999999999998 8999886532 14556678899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++.....- -.+.+++++++|++.
T Consensus 86 ~a~G~p~~i-----~~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 86 VAVGKPGFI-----PGDWIKEGAIVIDVG 109 (166)
T ss_dssp ECSCCTTCB-----CTTTSCTTCEEEECC
T ss_pred hhccCcccc-----cccccCCCcEEEecC
Confidence 999754320 135678899999863
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.43 E-value=0.0011 Score=58.88 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=27.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCe------EEEEeCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLK------VYMLMRD 161 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~------V~v~~r~ 161 (460)
|||+|||+|.+|...|..|+++| ++ ++++++.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G--~~v~v~e~~~i~~~~ 38 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERY--HSVLQPLDVKVYADR 38 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHH--TTTSSSCEEEEEESC
T ss_pred CEEEEECchHHHHHHHHHHHHCC--CCceEEeeeeecccC
Confidence 79999999999999999999999 54 5555543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.43 E-value=0.0083 Score=52.08 Aligned_cols=100 Identities=18% Similarity=0.329 Sum_probs=57.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+++|||||| .|..|.-+.+.|.++- ..++..+..+...-..+.+..... .....+. .....++...++|++|
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP-~~ei~~l~S~~~aG~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~Dvvf 76 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHP-QFRIKVMTADRKAGEQFGSVFPHL---ITQDLPN---LVAVKDADFSNVDAVF 76 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCS-SEEEEEEECSTTTTSCHHHHCGGG---TTSCCCC---CBCGGGCCGGGCSEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhCC-CceEEEEeccccCCCccccccccc---ccccccc---chhhhhhhhcccceee
Confidence 468999999 7999999999999763 357665553332212222111100 0111110 1112233457899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+|.....++...+. +...+|....+.
T Consensus 77 ~alp~~~s~~~~~~l~----~~~~~v~~~~~~ 104 (183)
T d2cvoa1 77 CCLPHGTTQEIIKGLP----QELKIVDLSADF 104 (183)
T ss_dssp ECCSSSHHHHHHHTSC----SSCEEEECSSTT
T ss_pred eccccchHHHHHHHHH----hcCcccccchhh
Confidence 9999888776665443 344556555443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.42 E-value=0.0073 Score=50.94 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=57.6
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
-||||||+ |..|.-+.+.|.++.+ ..++.++..+.. .|....+. ..........++...++|++++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s-------~G~~~~~~-----~~~~~~~~~~~~~~~~~d~~f~ 69 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-------AGKSLKFK-----DQDITIEETTETAFEGVDIALF 69 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG-------TTCEEEET-----TEEEEEEECCTTTTTTCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc-------cccccccc-----CCcccccccchhhhhhhhhhhh
Confidence 38999997 9999999999987642 234555543321 12211110 0112222233344678999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++|............ ..+..||+++.-+
T Consensus 70 ~~~~~~s~~~~~~~~---~~~~~VIDlSsdf 97 (154)
T d2gz1a1 70 SAGSSTSAKYAPYAV---KAGVVVVDNTSYF 97 (154)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSSTT
T ss_pred ccCccchhhHHhhhc---cccceehhcChhh
Confidence 999877665554443 3588999988643
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.35 E-value=0.0054 Score=55.65 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=30.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
-.|.|||+|.+|.+.|..|+++| .+|+++++++
T Consensus 5 ~DvvIIGaGi~Gls~A~~La~~G--~~V~vlE~~~ 37 (276)
T d1ryia1 5 YEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGT 37 (276)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 35999999999999999999999 8999999864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.011 Score=50.12 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=59.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH-HhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA-KTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~-~ea~~~aDiVi 204 (460)
...+|.|+|+|.+|...+..+...| .+|+++++++++.+..++.|....+.. .. ..+. +......|+++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~lGa~~~i~~-~~-------~~~~~~~~~~~~d~vi 96 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKMGADHYIAT-LE-------EGDWGEKYFDTFDLIV 96 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTCSEEEEG-GG-------TSCHHHHSCSCEEEEE
T ss_pred CCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhccCCcEEeec-cc-------hHHHHHhhhcccceEE
Confidence 4679999999999998777777777 899999999998888888775311000 00 0111 22334679999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.++....-.. ++.....++++-.++.+
T Consensus 97 ~~~~~~~~~~-~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 97 VCASSLTDID-FNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp ECCSCSTTCC-TTTGGGGEEEEEEEEEC
T ss_pred EEecCCccch-HHHHHHHhhccceEEEe
Confidence 8876432110 12233444555455544
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.023 Score=48.65 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=57.4
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||.+. +|.++|..|++.| ..|++++... .++.+..+++|++|
T Consensus 38 ~Gk~vvVIGrS~iVGrPLa~lL~~~g--atVt~~~~~t----------------------------~~l~~~~~~aDivi 87 (170)
T d1a4ia1 38 AGRHAVVVGRSKIVGAPMHDLLLWNN--ATVTTCHSKT----------------------------AHLDEEVNKGDILV 87 (170)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SSHHHHHTTCSEEE
T ss_pred ccceEEEEecCCccchHHHHHHHhcc--CceEEEeccc----------------------------ccHHHHHhhccchh
Confidence 468999999866 9999999999998 8999987643 14555678999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+- -..+++++.++|++.
T Consensus 88 ~a~G~~~~i-----~~~~vk~g~iviDvg 111 (170)
T d1a4ia1 88 VATGQPEMV-----KGEWIKPGAIVIDCG 111 (170)
T ss_dssp ECCCCTTCB-----CGGGSCTTCEEEECC
T ss_pred hcccccccc-----ccccccCCCeEeccC
Confidence 999865431 135678999999974
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.30 E-value=0.0099 Score=47.93 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=32.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..++|+|||+|.+|.-+|..|++.| .+|+++.+.+
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~ 63 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAG--VHVSLVETQP 63 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred cCCeEEEECcchhHHHHHHHhhccc--ceEEEEeecc
Confidence 3579999999999999999999999 9999999775
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.24 E-value=0.0076 Score=48.69 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+++|||+|.+|.=+|..|.+.| .+|+++.|++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG--~~Vtii~~~~ 53 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIG--LDVTVMVRSI 53 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred CCeEEEECCCccHHHHHHHHhhcC--CeEEEEEech
Confidence 578999999999999999999999 9999998763
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.0089 Score=47.72 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=31.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+||.|||+|.+|.-+|..|++.| .+|+++.|.+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G--~~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFD 54 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCEEEEECCChhhHHHHHHhhccc--cEEEEEeecc
Confidence 579999999999999999999999 9999999865
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.24 E-value=0.027 Score=50.59 Aligned_cols=112 Identities=10% Similarity=0.071 Sum_probs=72.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi 204 (460)
+.++|+|-|.|++|..+|..|.+.| ..|++.|.+...++.+..... .... ++++.. .+||+++
T Consensus 38 ~g~~v~IqG~GnVG~~~a~~L~~~G--akvv~~d~~~~~~~~~~~~~g-------------~~~~-~~~~~~~~~cDIl~ 101 (230)
T d1leha1 38 EGLAVSVQGLGNVAKALCKKLNTEG--AKLVVTDVNKAAVSAAVAEEG-------------ADAV-APNAIYGVTCDIFA 101 (230)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHC-------------CEEC-CGGGTTTCCCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEeecccHHHHHHHHHhcC-------------Cccc-CCcccccccccEec
Confidence 3689999999999999999999999 899999999888777665321 1111 233332 4799999
Q ss_pred EccchhcH-HHHHHHhhhcCCCCCeEEEec-cCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 205 HAMPVQFS-SSFLEGISDYVDPGLPFISLS-KGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 205 laVp~~~~-~~vl~~i~~~l~~~~iIV~~~-~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
-|--...+ .+.+..|. -.+|+... |++... ...+.+.++ | ++..|.+..
T Consensus 102 PcA~~~~I~~~~~~~l~-----ak~Ive~ANn~~t~~---ea~~~L~~r-G-------I~~iPD~la 152 (230)
T d1leha1 102 PCALGAVLNDFTIPQLK-----AKVIAGSADNQLKDP---RHGKYLHEL-G-------IVYAPDYVI 152 (230)
T ss_dssp ECSCSCCBSTTHHHHCC-----CSEECCSCSCCBSSH---HHHHHHHHH-T-------CEECCHHHH
T ss_pred ccccccccChHHhhccC-----ccEEEecccCCCCCc---hHHHHHHhh-C-------cEEEeehhh
Confidence 88665443 34444442 24677667 434321 223455554 3 456666543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.22 E-value=0.015 Score=49.86 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=54.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEE-eCCHH-HHHHHHhhcCCCcc-CCCCC--C-CCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MRDPA-VCQSINEKHCNCRY-FPEQK--L-PENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~-~r~~~-~~~~l~~~g~~~~~-~~~~~--l-~~~i~a~~~~~ea~~~a 200 (460)
|+||||-|.|++|..+.+.+.+.+ +.+|+.+ ++++. ....+...+..... .++.. . ...+.+..+..++.+++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~-di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v 79 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQD-DMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA 79 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSS-SEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCC-CceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence 579999999999999999998776 3566644 44433 22333332221100 00000 0 01122222455566789
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEE
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
|+||-|++..-..+-+ ..+++.|..+|
T Consensus 80 DvViEcTG~f~~~~~~---~~hl~~G~K~v 106 (171)
T d1cf2o1 80 DIVIDCTPEGIGAKNL---KMYKEKGIKAI 106 (171)
T ss_dssp SEEEECCSTTHHHHHH---HHHHHTTCEEE
T ss_pred CEEEEccCCCCCHHHH---HHHHHcCCCEE
Confidence 9999999976544332 33344454444
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.012 Score=48.92 Aligned_cols=34 Identities=18% Similarity=0.442 Sum_probs=31.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+.++|.|||+|.+|..-+..|.++| .+|++++..
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~G--A~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 3589999999999999999999999 899999754
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.15 E-value=0.0084 Score=53.14 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.||+|||+|.-|...|..|.+++.+++|++|++.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL 36 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 58999999999999999998876558999999876
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.14 E-value=0.037 Score=50.11 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=53.6
Q ss_pred CeEEEE-C-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVL-G-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~II-G-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+||++| | ++.+|.++|..|++.| .+|.+.+|+++.++++.++ +.+ ...+++.+
T Consensus 1 KKValITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~---------------------i~~--~g~~~~~~ 55 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDG--FAVAIADYNDATAKAVASE---------------------INQ--AGGHAVAV 55 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence 478666 5 5669999999999999 9999999999887766542 111 11233333
Q ss_pred ccc---hhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMP---VQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp---~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+- ...++.+++.+.+...+=.++|+..
T Consensus 56 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 86 (255)
T d1gega_ 56 KVDVSDRDQVFAAVEQARKTLGGFDVIVNNA 86 (255)
T ss_dssp ECCTTSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCccEEEecc
Confidence 222 3456777777766555445677654
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.08 E-value=0.01 Score=51.43 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=31.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|||.|||+|..|.-+|..|.+.+.+.+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 79999999999999999999876557899998764
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.07 E-value=0.012 Score=47.10 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|+|||+|.+|.=+|..|++.| .+|+++.+.+
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G--~~Vtiv~~~~ 55 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMD 55 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHHHHcC--CceEEEEeec
Confidence 589999999999999999999999 9999998765
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.01 Score=48.03 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|+|||+|.+|.-+|..|++.| .+|+++.|.+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G--~~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHD 55 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCEEEEEcCCccHHHHHHHHhcCC--cEEEEEeecc
Confidence 479999999999999999999999 9999999864
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.95 E-value=0.015 Score=46.90 Aligned_cols=34 Identities=32% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|+|||+|.+|.-+|..|++.| .+|+++.+.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g--~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILD 63 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHhhccc--eEEEEEEecC
Confidence 479999999999999999999999 9999998754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.92 E-value=0.02 Score=48.11 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=39.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~ 173 (460)
+..+|.|+|+|.+|...+..+...| .+|++.++++++.+.+++.|.
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~~Ga 72 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKELGA 72 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC
T ss_pred CCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhhcCc
Confidence 3578999999999998888888777 899999999999988888765
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.87 E-value=0.0095 Score=51.96 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=46.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.|++|.|.| .|.+|..++..|.++|....|+...|++++...+.. +...+... +.-..+..++++++|.|+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~---~~~~~~~d-----~~~~~~~~~~~~~~d~vi 73 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG---EADVFIGD-----ITDADSINPAFQGIDALV 73 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC---CTTEEECC-----TTSHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC---CcEEEEee-----eccccccccccccceeeE
Confidence 468999999 699999999999999932335556788866554322 11111000 000113455678899998
Q ss_pred Eccc
Q 012596 205 HAMP 208 (460)
Q Consensus 205 laVp 208 (460)
.+.-
T Consensus 74 ~~a~ 77 (252)
T d2q46a1 74 ILTS 77 (252)
T ss_dssp ECCC
T ss_pred EEEe
Confidence 8753
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.86 E-value=0.017 Score=46.86 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=50.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi 204 (460)
.-+|.|+|+|.+|.+++..+.... +++++ ++|-++++ .|.. +.+. .+...+++++.. +..++++
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~-~~~iv~fiDdd~~k------~G~~---I~Gi----~V~~~~~l~~~~~~~i~iai 68 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEK------VGRP---VRGG----VIEHVDLLPQRVPGRIEIAL 68 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTT------TTCE---ETTE----EEEEGGGHHHHSTTTCCEEE
T ss_pred CceEEEEcCCHHHHHHHHhHhhcC-CcEEEEEEeCchHh------cCCE---ECCE----EEecHHHHHHHHhhcccEEE
Confidence 348999999999999998775432 36766 66777631 1211 1111 122223444433 3568889
Q ss_pred EccchhcHHHHHHHhhh
Q 012596 205 HAMPVQFSSSFLEGISD 221 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~ 221 (460)
+++|+...+++++.+.+
T Consensus 69 ~~i~~~~~~~I~d~l~~ 85 (126)
T d2dt5a2 69 LTVPREAAQKAADLLVA 85 (126)
T ss_dssp ECSCHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHH
Confidence 99998887777776644
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.77 E-value=0.014 Score=53.33 Aligned_cols=35 Identities=23% Similarity=0.524 Sum_probs=31.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+++||.|+|+ |.+|..++..|.++| ++|++.+|+.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCC
Confidence 4688999995 999999999999999 9999999864
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.76 E-value=0.065 Score=48.59 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=37.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+++.|.| ++.||.++|..|++.| .+|++.+|+++.++++.+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G--~~V~i~~r~~~~l~~~~~ 48 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLG--ARVYTCSRNEKELDECLE 48 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 467899999 6779999999999999 999999999987776554
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.76 E-value=0.013 Score=47.12 Aligned_cols=34 Identities=24% Similarity=0.562 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|||+|.+|.-+|..|++.| .+|+++.+.+
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHhhccc--ceEEEEeccc
Confidence 479999999999999999999999 9999999865
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.73 E-value=0.013 Score=46.63 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..++.|||+|..|.-+|..|++.| ++|+++.+.+
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g--~~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARE 54 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcc--cceEEEeeec
Confidence 479999999999999999999999 9999998764
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.72 E-value=0.017 Score=47.28 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=32.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..++|.|||+|.+|.-+|..|++.| .+|+++.+.+
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g--~~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhC--cceeeeeecc
Confidence 3579999999999999999999999 9999999764
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.68 E-value=0.014 Score=54.98 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=54.0
Q ss_pred cchhccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc---CCCc----cCCCCCCCCceEEeC
Q 012596 120 KTDILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH---CNCR----YFPEQKLPENVIATT 191 (460)
Q Consensus 120 ~~~~~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g---~~~~----~~~~~~l~~~i~a~~ 191 (460)
+..++.+.++|.|.| +|.+|+.++..|.++| ++|+...|+....+.+.+.. .... ...++. -..
T Consensus 4 ~~~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G--~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~------~~~ 75 (342)
T d1y1pa1 4 DNAVLPEGSLVLVTGANGFVASHVVEQLLEHG--YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDML------KQG 75 (342)
T ss_dssp TTCSSCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTT------STT
T ss_pred CCCCCCCcCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEeCCchhHHHHHHhhhccccccccEEEecccc------chh
Confidence 345676779999999 7889999999999999 99999999987666554321 1000 001110 011
Q ss_pred CHHhhcCCCcEEEEcc
Q 012596 192 DAKTALLGADYCLHAM 207 (460)
Q Consensus 192 ~~~ea~~~aDiVilaV 207 (460)
+..+++.++|.|+.+.
T Consensus 76 ~~~~~~~~~~~v~~~a 91 (342)
T d1y1pa1 76 AYDEVIKGAAGVAHIA 91 (342)
T ss_dssp TTTTTTTTCSEEEECC
T ss_pred hhhhhcccchhhhhhc
Confidence 3456778899988654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.63 E-value=0.011 Score=53.97 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=31.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.+|.|||+|..|.++|..|++.| ++|+++++.++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G--~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 47999999999999999999999 89999998763
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.62 E-value=0.0052 Score=47.92 Aligned_cols=86 Identities=22% Similarity=0.240 Sum_probs=56.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehh
Q 012596 333 NLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGV 411 (460)
Q Consensus 333 kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~ 411 (460)
|+..|...++-...++|+..+|++.|+|...+.+..+....+ ..+..+ .+|.-. .|.++.
T Consensus 8 K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri-----~~~~~~~~pG~G~-GG~Clp------------- 68 (98)
T d1mv8a1 8 KYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKL-----NLSRYYMRPGFAF-GGSCLP------------- 68 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTT-----TTSSTTCSCCSCC-CSSSHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccc-----cccccccCCcccC-Cccccc-------------
Confidence 344456677778899999999999999988777643221100 001111 122111 244443
Q ss_pred hhHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 412 STAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 412 kd~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
||..++..++++.|++.++++.+.+.
T Consensus 69 KD~~al~~~a~~~~~~~~ll~~~~~~ 94 (98)
T d1mv8a1 69 KDVRALTYRASQLDVEHPMLGSLMRS 94 (98)
T ss_dssp HHHHHHHHHHHHTTCCCTTGGGHHHH
T ss_pred hhHHHHHHHHHHcCCChHHHHHHHHH
Confidence 78999999999999999999887765
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.62 E-value=0.013 Score=50.66 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=32.8
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|+..-.|.|||+|.-|...|..|+++| ++|+++++++
T Consensus 2 m~~~yDviViGaG~~Gl~~A~~La~~G--~~V~vlE~~~ 38 (297)
T d2bcgg1 2 IDTDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQD 38 (297)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCC
Confidence 444557999999999999999999999 9999999875
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.62 E-value=0.015 Score=48.53 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+||.|||+|..|..+|..|.+.+.+.+|+++++++
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 379999999999999999999988556899998775
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.61 E-value=0.014 Score=52.30 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=30.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+||+|||+|.-|.++|..|+++|. ++|+++.+.+
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi-~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGI-GKVTLLESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence 799999999999999999999993 3899999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.012 Score=43.83 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+++|+|||.|..|..|+..-.+-| ++|.+++.++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG--~~v~vldp~~ 34 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLG--IAVWPVGLDA 34 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGT--EEEEEECTTS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcC--CEEEEEcCCC
Confidence 478999999999999999999988 9999999765
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.58 E-value=0.062 Score=48.57 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=53.1
Q ss_pred eEEEE-C-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 129 KVVVL-G-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 129 kI~II-G-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||++| | ++.||.++|..|++.| .+|.+++|+++.++++.++ +.+ ...++..+.
T Consensus 3 KValITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~---------------------l~~--~g~~~~~~~ 57 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEG--LRVFVCARGEEGLRTTLKE---------------------LRE--AGVEADGRT 57 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEEE
Confidence 57666 4 6679999999999999 9999999999877766542 111 112233222
Q ss_pred c---chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 M---PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 V---p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
. ....++.+++.+.+...+=.++|+..
T Consensus 58 ~Dvs~~~~v~~~~~~~~~~~g~iDilVnnA 87 (257)
T d2rhca1 58 CDVRSVPEIEALVAAVVERYGPVDVLVNNA 87 (257)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred eecCCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence 2 23457777777766655445677654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.016 Score=52.41 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||+|||+|.=|..-|..|+++| ++|+++..+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G--~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence 4578999999999999999999999 9999998764
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.49 E-value=0.013 Score=50.83 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=29.6
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~ 162 (460)
||+|||+|.-|.+.|..|+++| . +|+++.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G--~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAG--ITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCC--CCcEEEEECCC
Confidence 7999999999999999999999 5 799999865
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.41 E-value=0.015 Score=51.90 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=32.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..+||.|||+|.-|...|..|++.| ++|++++++++
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G--~~v~l~E~~~~ 83 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEK 83 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSS
T ss_pred CCceEEEEcccHHHHHHHHHHHHhc--cceeeEeeccc
Confidence 4589999999999999999999999 99999998763
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.39 E-value=0.014 Score=46.94 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..++.|||+|.+|.=+|..|++.| .+|+++.|.+
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G--~~Vtvi~~~~ 58 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFAS 58 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcC--CeEEEEEEcc
Confidence 579999999999999999999999 9999998765
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.015 Score=54.11 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=31.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|.+|.|||+|.-|...|..|++.| ++|++++++.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g--~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCC--CcEEEEECCC
Confidence 468999999999999999999999 9999999875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.11 E-value=0.058 Score=45.54 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=59.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCC-HHhhc-----CC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD-AKTAL-----LG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~-~~ea~-----~~ 199 (460)
...+|.|+|+|.+|...+..+...|. ..|++.++++++.+.+++.|..... ...++ .++.. ..
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~ga~~~i----------~~~~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLGADHVV----------DARRDPVKQVMELTRGRG 100 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTTCSEEE----------ETTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcccceee----------cCcccHHHHHHHhhCCCC
Confidence 45789999999999998888877672 5678889999888888876642110 00011 11111 25
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+|+||-++..... ++.....++++..++.+
T Consensus 101 ~d~vid~~g~~~~---~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 101 VNVAMDFVGSQAT---VDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEEEEESSCCHHH---HHHGGGGEEEEEEEEEC
T ss_pred ceEEEEecCcchH---HHHHHHHHhCCCEEEEE
Confidence 7999999886542 23334445555555544
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.03 E-value=0.023 Score=46.00 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..++.|||+|.+|.=+|..|++.| .+|+++.+.+
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G--~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCC--CEEEEEEeec
Confidence 579999999999999999999999 9999998765
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.13 Score=46.16 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=33.5
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+.|-| ++.+|.++|..|++.| .+|.+.+|+.+..++..+
T Consensus 4 KvalITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~ 45 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCKA 45 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 4455556 4679999999999999 999999999987776654
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.99 E-value=0.017 Score=47.44 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=64.0
Q ss_pred CCeEEEECc----------chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCC-CceEEeCCHHh
Q 012596 127 TNKVVVLGG----------GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP-ENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGa----------G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~-~~i~a~~~~~e 195 (460)
..||+|+|+ +.-...++..|.+.| .+|.+||..-+..+ -.+....++.. ..+ .+....+++.+
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g--~~V~~~DP~v~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~e 86 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKG--YELRIFDRNVEYAR---VHGANKEYIES-KIPHVSSLLVSDLDE 86 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTT--CEEEEECHHHHHHT---TSSSCHHHHHH-TSHHHHTTBCSCHHH
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhh--ccccccCCCCCHHH---Hhhhhhhhhhh-ccccccceeehhhhh
Confidence 479999998 567888999999998 89999986321110 00000000000 000 01123468899
Q ss_pred hcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 196 ALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 196 a~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
++.++|+||++++.....++. ..+.++.+|+++.+ +.+
T Consensus 87 ~i~~~D~ivi~t~h~~f~~l~----~~~~~~~~I~D~~~-~~~ 124 (136)
T d1mv8a3 87 VVASSDVLVLGNGDELFVDLV----NKTPSGKKLVDLVG-FMP 124 (136)
T ss_dssp HHHHCSEEEECSCCGGGHHHH----HSCCTTCEEEESSS-CCS
T ss_pred hhhhceEEEEEeCCHHHHHHH----HHhcCCCEEEECCC-CCC
Confidence 999999999999988766543 33456788999864 543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.17 Score=45.61 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+.+.|.| .+.+|.++|..|++.| .+|++++|++++++++.++ ..+.-...+++.+
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G--~~Vv~~~r~~~~l~~~~~~---------------------l~~~~~~~~~~~~ 66 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQG--LKVVGCARTVGNIEELAAE---------------------CKSAGYPGTLIPY 66 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHHTTCSSEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHhcCCCceEEEE
Confidence 35677777 6789999999999999 9999999999887776543 1111112234333
Q ss_pred cc---chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AM---PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aV---p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+ ....++.+++.+.+....=.++|+..
T Consensus 67 ~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 67 RCDLSNEEDILSMFSAIRSQHSGVDICINNA 97 (257)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred EccCCCHHHHHHHHHHHHHhcCCCCEEEecc
Confidence 22 23456777777766554445677664
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.92 E-value=0.028 Score=44.64 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|+|||+|.+|.=+|..|++.| .+|+++.+.+
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g--~~vt~i~~~~ 55 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTE 55 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcc--hhheEeeccc
Confidence 479999999999999999999998 8999999865
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.91 E-value=0.015 Score=51.26 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-----CCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS-----QLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~-----~~~V~v~~r~~~ 163 (460)
.+||+|||+|.-|.+.|..|+++|+ +++|++|++.+.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 4699999999999999999999872 247999998763
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.85 E-value=0.021 Score=52.40 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=29.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+|.|||+|.+|.+.|..|+++|. ++|++++++.
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~-~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGW-NNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence 379999999999999999999982 3799999864
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.12 Score=46.29 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=54.7
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+.|.|-|++ .+|..+|..|+++| .+|.+++|++++++++.++ ..+ ...++..+
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G--~~V~l~~r~~~~l~~~~~~---------------------~~~--~~~~~~~~ 61 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAAK---------------------CKG--LGAKVHTF 61 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence 3455666755 59999999999999 9999999999988777653 111 12233333
Q ss_pred ccc---hhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMP---VQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp---~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+- ...++.+++.+.+...+-.++|+..
T Consensus 62 ~~Dvs~~~~v~~~~~~i~~~~g~idilinna 92 (244)
T d1yb1a_ 62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNA 92 (244)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCceeEeec
Confidence 322 2356777777766665555667654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.13 Score=46.43 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=53.0
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+++.|-| ++.+|.++|..|++.| .+|++.+|+++.++++.++ +.+ ...+++.+
T Consensus 11 gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~---------------------l~~--~g~~~~~~ 65 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDE---------------------IQQ--LGGQAFAC 65 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHH--cCCcEEEE
Confidence 34555555 5779999999999999 9999999999877766542 111 11223333
Q ss_pred cc---chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AM---PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aV---p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+ ....++.+++++.+.+.+=.++|+..
T Consensus 66 ~~Dvs~~~~~~~~~~~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 66 RCDITSEQELSALADFAISKLGKVDILVNNA 96 (255)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEeeeCC
Confidence 22 23456677777766554445677654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.68 E-value=0.07 Score=44.79 Aligned_cols=94 Identities=11% Similarity=0.131 Sum_probs=59.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------C
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------L 198 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------~ 198 (460)
...+|.|+|+ |.+|...+..+...|. ..|+++++++++.+.+++.|........ ..+..+.+ .
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~Ga~~~i~~~---------~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAGADYVINAS---------MQDPLAEIRRITESK 96 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHTTTS
T ss_pred CCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcCCceeeccC---------CcCHHHHHHHHhhcc
Confidence 3568999995 9999998888887772 5899999999988888877642111000 01221111 3
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.+|+||-|+..... ++.....++++..++.+
T Consensus 97 ~~d~vid~~g~~~~---~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 97 GVDAVIDLNNSEKT---LSVYPKALAKQGKYVMV 127 (170)
T ss_dssp CEEEEEESCCCHHH---HTTGGGGEEEEEEEEEC
T ss_pred cchhhhcccccchH---HHhhhhhcccCCEEEEe
Confidence 47999988875432 23334455555555544
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=93.59 E-value=0.19 Score=45.83 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=33.3
Q ss_pred eEEEE--CcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 129 KVVVL--GGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 129 kI~II--GaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
|++|| |+|.+|.++|..|+++| .+|++.+|+.++.++..+
T Consensus 26 K~alITGas~GIG~aiA~~la~~G--a~Vii~~r~~~~l~~~~~ 67 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLG--AQCVIASRKMDVLKATAE 67 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence 55555 58999999999999999 999999999887665443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.50 E-value=0.14 Score=46.39 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.6
Q ss_pred eEEEE-C-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 129 KVVVL-G-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 129 kI~II-G-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
|+++| | ++.+|.++|..|++.| .+|.+.+|+.+.++++.+
T Consensus 6 KvalVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~ 47 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREG--AKVTITGRHAERLEETRQ 47 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 45555 4 6899999999999999 999999999987776654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.44 E-value=0.12 Score=44.68 Aligned_cols=97 Identities=15% Similarity=0.060 Sum_probs=60.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH----hh--cCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK----TA--LLG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~----ea--~~~ 199 (460)
...+|.|+|+|.+|...+..+...| ...|++.++++++++..++.|......+. ..+.. +. -..
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~---------~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQGFEIADLSL---------DTPLHEQIAALLGEPE 94 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEETTS---------SSCHHHHHHHHHSSSC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhccccEEEeCC---------CcCHHHHHHHHhCCCC
Confidence 4679999999999977776666666 24788999999998888887753111100 01221 21 135
Q ss_pred CcEEEEccchh------------cHHHHHHHhhhcCCCCCeEEEe
Q 012596 200 ADYCLHAMPVQ------------FSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 200 aDiVilaVp~~------------~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+|++|-++-.+ ...+.++.....++++..++.+
T Consensus 95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 89999988522 1234555555556665555443
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.015 Score=57.12 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=55.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCC----------CCCc--eEE----
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQK----------LPEN--VIA---- 189 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~~----------l~~~--i~a---- 189 (460)
..||.|||+|.+|+.++..|+..|. .+++++|.+.=....++.+-. ...+++..+ +.+. +..
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gv-g~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 115 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGF-RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 115 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTC-CCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence 4799999999999999999999996 379999876422222221110 111111000 0111 111
Q ss_pred -eCCHHhhcCCCcEEEEccchhcHHHHHHHh
Q 012596 190 -TTDAKTALLGADYCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 190 -~~~~~ea~~~aDiVilaVp~~~~~~vl~~i 219 (460)
.+...+.++++|+||.|+-....+..+..+
T Consensus 116 i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~ 146 (426)
T d1yovb1 116 IQDFNDTFYRQFHIIVCGLDSIIARRWINGM 146 (426)
T ss_dssp GGGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred ccchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence 122245578999999999987766666554
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.39 E-value=0.2 Score=45.19 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=55.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+.+.|-|+ +.||.++|..|++.| .+|.+.+|+.+.+++..+. ..+...+..++.+
T Consensus 4 gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~---------------------~~~~~~~~~~~~~ 60 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASKAA---------------------VLETAPDAEVLTT 60 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHHHCTTCCEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHhhCCCCeEEEE
Confidence 355666675 469999999999999 9999999999877665442 1111123344433
Q ss_pred cc---chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AM---PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aV---p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+ ...+++.+++++.+...+=.++|+..
T Consensus 61 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 61 VADVSDEAQVEAYVTATTERFGRIDGFFNNA 91 (258)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred eccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 32 23457777777766554445777754
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=93.36 E-value=0.021 Score=51.30 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=36.3
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
|.+...|.|||+|.-|...|..|+++| ++|.++++++..-..+.
T Consensus 1 M~~~~DViIIGaG~aGl~aA~~la~~G--~~V~vlEk~~~~G~k~~ 44 (253)
T d2gqfa1 1 MSQYSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIGRKIL 44 (253)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHH
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCceE
Confidence 334467999999999999999999999 89999999875444443
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.21 E-value=0.04 Score=51.92 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=32.9
Q ss_pred ccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 124 ~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|++.|||.|.| .|-+|+.++..|.+.| ++|+++|+..
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g--~~V~~~d~~~ 49 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEG--HYVIASDWKK 49 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEeCCC
Confidence 45569999999 8999999999999999 9999998754
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.20 E-value=0.12 Score=46.48 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=52.9
Q ss_pred CeEEEE-Cc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVL-GG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~II-Ga-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
-||++| |+ +.+|.++|..|++.| .+|.+++|+++.++++.++ +++ ...++..+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~G--a~V~~~~r~~~~l~~~~~~---------------------l~~--~g~~~~~~ 64 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSV--SHVICISRTQKSCDSVVDE---------------------IKS--FGYESSGY 64 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTS--SEEEEEESSHHHHHHHHHH---------------------HHT--TTCCEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence 355554 75 679999999999999 9999999999887766543 111 11223323
Q ss_pred cc---chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AM---PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aV---p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+ ....+..+++++.....+=.++|+..
T Consensus 65 ~~Dvt~~~~v~~~~~~~~~~~g~iDilvnna 95 (251)
T d2c07a1 65 AGDVSKKEEISEVINKILTEHKNVDILVNNA 95 (251)
T ss_dssp ECCTTCHHHHHHHHHHHHHHCSCCCEEEECC
T ss_pred EccCCCHHHHHHHHHHHHHhcCCceeeeecc
Confidence 22 23457777887766555445677654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.98 E-value=0.037 Score=50.01 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=30.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
-.|.|||+|.+|...|..|+++| .+|+++++..
T Consensus 4 yDvvIIGaGi~Gls~A~~La~~G--~~V~viE~~~ 36 (281)
T d2gf3a1 4 FDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFD 36 (281)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 35899999999999999999999 8999999753
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=92.94 E-value=0.17 Score=45.59 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCCeEEEECc-c--hHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGG-G--SFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGa-G--~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+.+++.|.|+ | .||.++|..|++.| .+|++.+|+++
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~G--a~V~i~~r~~~ 42 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQG--ATLAFTYLNES 42 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTT--CEEEEEESSTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence 5678999996 4 49999999999999 99999999864
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.91 E-value=0.25 Score=44.56 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=35.3
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
.+.+.|.| .+.+|.++|..|++.| .+|++.+|+++.++++.++
T Consensus 6 gKvalITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~ 49 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYG--AKVVIADIADDHGQKVCNN 49 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH
Confidence 34555556 6679999999999999 9999999999888776653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.028 Score=49.90 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=47.4
Q ss_pred cCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 125 ~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+.+||.|.| .|.+|..+...|.++|.-++|++++|++.....-........ ..+ +.-.++..++++++|++
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~-~~D------~~~~~~~~~~~~~~d~v 84 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQE-VVD------FEKLDDYASAFQGHDVG 84 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEE-ECC------GGGGGGGGGGGSSCSEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeee-eec------ccccccccccccccccc
Confidence 3457999999 799999999999998843489999997532110000000000 000 00012455667889999
Q ss_pred EEccc
Q 012596 204 LHAMP 208 (460)
Q Consensus 204 ilaVp 208 (460)
+.++-
T Consensus 85 i~~~~ 89 (232)
T d2bkaa1 85 FCCLG 89 (232)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 98764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.048 Score=48.97 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..||.|||+|.+|+.++..|++.|. -+++++|.+.
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence 4799999999999999999999996 4799999775
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.73 E-value=0.035 Score=49.97 Aligned_cols=35 Identities=17% Similarity=0.480 Sum_probs=31.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
++||.|+|+ |.+|+.++..|.++| ++|++++|+..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G--~~V~~l~R~~~ 38 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLG--HPTFLLVREST 38 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEECCCc
Confidence 589999996 999999999999999 99999998653
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.14 Score=46.39 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=36.0
Q ss_pred CCeEEEE--CcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVL--GGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~II--GaG~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.|+|+|| |.+-+|.++|..|++. | ..|++++|+.++.++..+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g--~~Vi~~~r~~~~~~~~~~ 46 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAVQ 46 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS--SEEEEEESSHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHH
Confidence 4789998 7899999999999986 7 899999999988766554
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.22 Score=41.70 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=58.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------C
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------L 198 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------~ 198 (460)
+..+|.|+|+ |.+|......+...| .+|++.++++++.+.+++.|....+.. . ..+..+.+ +
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~~vi~~--~-------~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNGAHEVFNH--R-------EVNYIDKIKKYVGEK 96 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEET--T-------STTHHHHHHHHHCTT
T ss_pred CCCEEEEEeccccccccccccccccC--cccccccccccccccccccCccccccc--c-------cccHHHHhhhhhccC
Confidence 4578999996 999998888777777 899999999888888877765311100 0 01222211 3
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
..|+|+-++....++..+ +.++++..++.+
T Consensus 97 g~d~v~d~~g~~~~~~~~----~~l~~~G~iv~~ 126 (174)
T d1yb5a2 97 GIDIIIEMLANVNLSKDL----SLLSHGGRVIVV 126 (174)
T ss_dssp CEEEEEESCHHHHHHHHH----HHEEEEEEEEEC
T ss_pred CceEEeecccHHHHHHHH----hccCCCCEEEEE
Confidence 478888888654444433 344455555555
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.62 E-value=0.19 Score=45.37 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=35.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+.+.|-|+ +.+|.++|..|++.| .+|.+.+|+++.++++.+
T Consensus 5 gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~ 47 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEG--TAIALLDMNREALEKAEA 47 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 466777786 569999999999999 999999999988776654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.52 E-value=0.12 Score=43.81 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=53.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-----cCCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-----~~~a 200 (460)
...+|.|+|+|.+|...+..+...|. ..|++.++++++.+..++.|....+.. ...+ ...... -.++
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~~~i~~-~~~~------~~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGATDCLNP-RELD------KPVQDVITELTAGGV 99 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCSEEECG-GGCS------SCHHHHHHHHHTSCB
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCCcccCC-ccch------hhhhhhHhhhhcCCC
Confidence 45789999999999999888888882 368889999988887777765321100 0000 011111 2468
Q ss_pred cEEEEccchhcH
Q 012596 201 DYCLHAMPVQFS 212 (460)
Q Consensus 201 DiVilaVp~~~~ 212 (460)
|++|-|+.....
T Consensus 100 d~vie~~G~~~~ 111 (174)
T d1e3ia2 100 DYSLDCAGTAQT 111 (174)
T ss_dssp SEEEESSCCHHH
T ss_pred cEEEEecccchH
Confidence 999999986543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.51 E-value=0.15 Score=42.98 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=54.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-----cCCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-----~~~a 200 (460)
+..+|.|+|+|.+|...+..++..| ...|++.++++++.+..++.|....... .... +...+. -..+
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~-~~~~------~~~~~~~~~~~~~G~ 99 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEVGATECVNP-QDYK------KPIQEVLTEMSNGGV 99 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEEECG-GGCS------SCHHHHHHHHTTSCB
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHhCCeeEEec-CCch------hHHHHHHHHHhcCCC
Confidence 4578999999999999999999887 2589999999999888888764311000 0000 111111 1368
Q ss_pred cEEEEccchhcH
Q 012596 201 DYCLHAMPVQFS 212 (460)
Q Consensus 201 DiVilaVp~~~~ 212 (460)
|++|-++.....
T Consensus 100 D~vid~~G~~~~ 111 (176)
T d2jhfa2 100 DFSFEVIGRLDT 111 (176)
T ss_dssp SEEEECSCCHHH
T ss_pred CEEEecCCchhH
Confidence 999999886654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.48 E-value=0.035 Score=49.94 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=30.5
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|||.|.|+ |-+|+.++..|.+.| ++|+..+|.+
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g--~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN--VEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS--EEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CEEEEeechh
Confidence 78999997 999999999999998 9999998864
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.45 E-value=0.26 Score=44.19 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=54.4
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.+.+.|-|+ +.||.++|..|++.| ++|.+.+|+.+..++..++ +.+. .+.++..
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~---------------------l~~~-~g~~~~~ 59 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAG--CSVVVASRNLEEASEAAQK---------------------LTEK-YGVETMA 59 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHHH-HCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHHH-hCCcEEE
Confidence 3467778885 569999999999999 9999999998876654432 1110 1223333
Q ss_pred Ecc---chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAM---PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laV---p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+.+ ....++.+++++.+...+=.++|+..
T Consensus 60 ~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 60 FRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAA 91 (251)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 322 23456777777766554445677654
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=92.41 E-value=0.045 Score=50.91 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..+|+|||+|.-|.++|..|.++| .+|+++++.++
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G--~~v~i~Ek~~~ 41 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGD 41 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHhCC--CCEEEEEcCCC
Confidence 357999999999999999999999 89999998764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.30 E-value=0.053 Score=50.82 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=48.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeC---CHHhhcCC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATT---DAKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a~~---~~~ea~~~ 199 (460)
+.++|.|+| .|.+|+.++..|.+.| ++|++..|++... ..+... .+.....+ + ..+ ..+.++..
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G--~~V~~l~R~~~~~~~~~~~~~-~~v~~~~g-D------~~d~~~~~~~a~~~ 71 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG--HHVRAQVHSLKGLIAEELQAI-PNVTLFQG-P------LLNNVPLMDTLFEG 71 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT--CCEEEEESCSCSHHHHHHHTS-TTEEEEES-C------CTTCHHHHHHHHTT
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC--CeEEEEECCcchhhhhhhccc-CCCEEEEe-e------CCCcHHHHHHHhcC
Confidence 357999999 5999999999999999 9999999986533 222221 01110000 0 011 13456778
Q ss_pred CcEEEEccchh
Q 012596 200 ADYCLHAMPVQ 210 (460)
Q Consensus 200 aDiVilaVp~~ 210 (460)
+|.+++..+..
T Consensus 72 ~~~~~~~~~~~ 82 (350)
T d1xgka_ 72 AHLAFINTTSQ 82 (350)
T ss_dssp CSEEEECCCST
T ss_pred CceEEeecccc
Confidence 99999887643
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.056 Score=49.48 Aligned_cols=31 Identities=39% Similarity=0.499 Sum_probs=29.3
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|+|||+|.-|.+-|..|+++| ++|+++++..
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G--~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSG--LNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence 899999999999999999999 9999999765
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.14 E-value=0.27 Score=44.28 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=35.9
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+.+.|-|++ .||.++|..|++.| .+|++++|+++.++++.+
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~ 50 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLG--ASVYTCSRNQKELNDCLT 50 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 35677777864 69999999999999 999999999988776654
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.04 E-value=0.14 Score=43.63 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=57.9
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCC----CceEEe--CCHHhhcC
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP----ENVIAT--TDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~----~~i~a~--~~~~ea~~ 198 (460)
+.+++.|||-+. +|.++|..|++.| ..|+.++.+.... ...+ .+..+. ..+... +.+.+...
T Consensus 28 ~GK~vvVIGrS~iVG~Pla~lL~~~g--aTVt~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~lk~~~~ 96 (171)
T d1edza1 28 YGKKCIVINRSEIVGRPLAALLANDG--ATVYSVDVNNIQK-----FTRG----ESLKLNKHHVEDLGEYSEDLLKKCSL 96 (171)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTS--CEEEEECSSEEEE-----EESC----CCSSCCCCEEEEEEECCHHHHHHHHH
T ss_pred CCCEEEEECCccccHHHHHHHHHHCC--CEEEEeccccccc-----cccc----cceeeeeeccccccccchhHHhhccc
Confidence 468999999775 6999999999998 8899887653100 0000 011110 011111 12455566
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+|+||.+++..... + -.+++++|+++|+..
T Consensus 97 ~aDIvIsavG~p~~~--i--~~d~ik~GavvIDvG 127 (171)
T d1edza1 97 DSDVVITGVPSENYK--F--PTEYIKEGAVCINFA 127 (171)
T ss_dssp HCSEEEECCCCTTCC--B--CTTTSCTTEEEEECS
T ss_pred cCCEEEEccCCCccc--c--ChhhcccCceEeecc
Confidence 899999999864320 0 135678899999875
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.00 E-value=0.069 Score=41.19 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=52.5
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehh
Q 012596 332 MNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGV 411 (460)
Q Consensus 332 ~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~ 411 (460)
.|+..|...++-...++|+..+|++.|++...+.+.......+ + ..-...|..+ .|..+ .
T Consensus 7 ~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~----~--~~~~~pg~g~-GG~Cl-------------p 66 (98)
T d1dlja1 7 VKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRI----G--MHYNNPSFGY-GGYSL-------------P 66 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTT----C--SSSCCCCSSC-CSSHH-------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcccc----C--CccccCCCCc-ccccC-------------c
Confidence 3455677788889999999999999999977665421111100 0 0000111111 23333 2
Q ss_pred hhHHHHHHHHHHcCCCChHHHHHHHHH
Q 012596 412 STAGAVIALAQKYNVKMPVLTAVARII 438 (460)
Q Consensus 412 kd~g~vv~lA~~~gv~~P~~~~v~~ll 438 (460)
||..++ ++.+.|++.|+++++.+.-
T Consensus 67 KD~~al--~~~~~~~~~~ll~~~~~~N 91 (98)
T d1dlja1 67 KDTKQL--LANYNNIPQTLIEAIVSSN 91 (98)
T ss_dssp HHHHHH--HHHHTTSSCSHHHHHHHHH
T ss_pred ccHHHH--HHHhcCCCcHHHHHHHHHH
Confidence 777777 4677899999999887753
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=91.92 E-value=0.24 Score=44.54 Aligned_cols=84 Identities=10% Similarity=0.076 Sum_probs=50.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~-~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+.+.+.|-| .+.||.++|..|++.| .+|++.+|+ .+.++++.+. ..+ ..+.+++
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~G--a~V~~~~r~~~~~~~~~~~~---------------------~~~-~~g~~~~ 58 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQG--ADIVLNGFGDAAEIEKVRAG---------------------LAA-QHGVKVL 58 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEECCSCHHHHHHHHHH---------------------HHH-HHTSCEE
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHH---------------------HHH-hcCCcEE
Confidence 334444445 5669999999999999 999999987 4455544432 111 0123344
Q ss_pred EEccc---hhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 204 LHAMP---VQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp---~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+.+- ..+++.+++++.+...+=.++|+..
T Consensus 59 ~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA 91 (260)
T d1x1ta1 59 YDGADLSKGEAVRGLVDNAVRQMGRIDILVNNA 91 (260)
T ss_dssp EECCCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred EEECCCCCHHHHHHHHHHHHHHhCCCcEEEeec
Confidence 33332 3456777777765554445677654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.068 Score=48.05 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=33.6
Q ss_pred eEEEE--CcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 129 KVVVL--GGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 129 kI~II--GaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
|+++| |++.+|.++|..|++.| ++|++.+|++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G--~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREG--AKVIATDINESKLQELEK 48 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHGGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh
Confidence 55666 68999999999999999 999999999877665543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.12 Score=46.93 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=37.3
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+++.|.|++. +|.++|..|++.| .+|++.+|+.+.++++.+
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~G--~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKMG--AHVVVTARSKETLQKVVS 56 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 557888889654 9999999999999 999999999988877654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.74 E-value=0.24 Score=41.62 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=60.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------C
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------L 198 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------~ 198 (460)
+..+|.|.|+ |.+|...+..+...| .+|++.++++++.+.+++.|...... . . ..+..+.+ +
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~~Ga~~vi~--~--~-----~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRLGVEYVGD--S--R-----SVDFADEILELTDGY 93 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTTCCSEEEE--T--T-----CSTHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCcccccchhhcccc--ccceeeeccccccccccccccccccc--C--C-----ccCHHHHHHHHhCCC
Confidence 4578999895 999999888888888 89999999988888887766431100 0 0 01222222 3
Q ss_pred CCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 199 ~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
++|+||-++........++ .++++..+|.+
T Consensus 94 g~d~v~d~~g~~~~~~~~~----~l~~~G~~v~~ 123 (183)
T d1pqwa_ 94 GVDVVLNSLAGEAIQRGVQ----ILAPGGRFIEL 123 (183)
T ss_dssp CEEEEEECCCTHHHHHHHH----TEEEEEEEEEC
T ss_pred CEEEEEecccchHHHHHHH----HhcCCCEEEEE
Confidence 5899999998655554443 34445566665
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.42 Score=43.89 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=56.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.+.+.|-|+ +.+|.++|..|++.| ++|++.+|+.++++...++-.. .... ..+.+++.
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~G--a~Vvi~~r~~~~l~~~~~el~~-----------------~~~~-~~~~~~~~ 70 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLELG--SNVVIASRKLERLKSAADELQA-----------------NLPP-TKQARVIP 70 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----------------TSCT-TCCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh-----------------hhcc-ccCceEEE
Confidence 4567777784 569999999999999 9999999999877655442100 0000 12344554
Q ss_pred Eccc---hhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMP---VQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp---~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+.+- ..+++.+++++.+...+=.++|+..
T Consensus 71 ~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 71 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNG 102 (297)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred EeccCCCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 4432 3456777777766555445777754
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.59 E-value=0.15 Score=42.87 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=57.3
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH-H--hhcCCC
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA-K--TALLGA 200 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~-~--ea~~~a 200 (460)
++..+|.|.|+ |.+|......+...| .+|+..++++++.+.+++.|... +.-..+. . ...+++
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~lGa~~-----------~i~~~~~~~~~~~~~g~ 92 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLALGAEE-----------AATYAEVPERAKAWGGL 92 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHTTCSE-----------EEEGGGHHHHHHHTTSE
T ss_pred CCCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccccccce-----------eeehhhhhhhhhccccc
Confidence 34678999996 999998888777778 89999999988888887766421 1111111 1 123468
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
|+||=++.. .+... ...++++..++.+
T Consensus 93 D~v~d~~G~-~~~~~----~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 93 DLVLEVRGK-EVEES----LGLLAHGGRLVYI 119 (171)
T ss_dssp EEEEECSCT-THHHH----HTTEEEEEEEEEC
T ss_pred cccccccch-hHHHH----HHHHhcCCcEEEE
Confidence 888887753 23333 3344445455544
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=91.42 E-value=0.071 Score=47.09 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=31.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..|.|||+|..|...|..|+++| ++|+++++++.
T Consensus 3 yDViIIGaG~aGl~aA~~la~~G--~~V~liEk~~~ 36 (251)
T d2i0za1 3 YDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNK 36 (251)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 46999999999999999999999 99999998764
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=91.31 E-value=0.5 Score=42.16 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=53.7
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+.+.|-| ++.||.++|..|++.| .+|.+.+|+++.++.+.+.-. ...++.++
T Consensus 6 gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~~------------------------~~~~~~~~ 59 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEG--AKVMITGRHSDVGEKAAKSVG------------------------TPDQIQFF 59 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHC------------------------CTTTEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhC------------------------CCCcEEEE
Confidence 35566667 6679999999999999 999999999988776655310 01122222
Q ss_pred cc---chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AM---PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aV---p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.. ....++.+++++.+...+=.++|+..
T Consensus 60 ~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA 90 (251)
T d1zk4a1 60 QHDSSDEDGWTKLFDATEKAFGPVSTLVNNA 90 (251)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred EccCCCHHHHHHHHHHHHHHhCCceEEEecc
Confidence 22 23456777777766554445777754
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.18 E-value=0.49 Score=42.20 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=34.2
Q ss_pred CeEEEE-Cc-chHHHHHHHHHHh---cCCCCeEEEEeCCHHHHHHHHh
Q 012596 128 NKVVVL-GG-GSFGTAMAAHVAN---KKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 128 ~kI~II-Ga-G~mG~~~A~~La~---~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
-||+|| |+ +.+|.++|..|++ .| ++|++.+|+.+.++++.+
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G--~~Vv~~~r~~~~l~~~~~ 51 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPG--SVMLVSARSESMLRQLKE 51 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTT--CEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCC--CEEEEEECCHHHHHHHHH
Confidence 578888 65 5799999999996 57 899999999988776654
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.11 E-value=0.13 Score=46.07 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=35.1
Q ss_pred CCCeEEEECc-ch--HHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHh
Q 012596 126 RTNKVVVLGG-GS--FGTAMAAHVANKKSQLKVYMLMRDPAVC-QSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~--mG~~~A~~La~~G~~~~V~v~~r~~~~~-~~l~~ 170 (460)
+.+++.|.|+ |. ||.++|+.|++.| .+|++.+|+.++. +++.+
T Consensus 5 ~gK~~lItGaag~~GIG~aiA~~la~~G--a~Vil~~~~~~~~~~~~~~ 51 (268)
T d2h7ma1 5 DGKRILVSGIITDSSIAFHIARVAQEQG--AQLVLTGFDRLRLIQRITD 51 (268)
T ss_dssp TTCEEEECCCSSTTCHHHHHHHHHHHTT--CEEEEEECSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHcC--CEEEEEeCChHHHHHHHHH
Confidence 5688999996 54 9999999999999 9999999987654 44443
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.2 Score=44.72 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=38.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH 172 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g 172 (460)
+.+++.|.| ++.+|.++|..|++.| ++|++.+|+++.++++.++.
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~~ 51 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATG--ARVVAVSRTQADLDSLVREC 51 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhc
Confidence 346788888 5679999999999999 99999999999888877653
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.04 E-value=0.5 Score=43.38 Aligned_cols=97 Identities=16% Similarity=0.099 Sum_probs=57.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEe-----------CCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM-----------RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~-----------r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
+.++|+|=|.|++|...|..|.+.| ..|+.++ .+.+.+..+.........+++..+. .+++
T Consensus 35 ~gktvaIqGfGnVG~~~A~~L~e~G--akvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~-----~~~~- 106 (293)
T d1hwxa1 35 GDKTFAVQGFGNVGLHSMRYLHRFG--AKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIY-----EGSI- 106 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBC-----CSCG-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccC-----Cccc-
Confidence 3579999999999999999999999 8877554 3444555555443332222222111 1122
Q ss_pred hhcCCCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 195 TALLGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 195 ea~~~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
.-.+||+++-|--...+ .+. .+.++ -.+|+-..||-
T Consensus 107 -~~~~~DIliPaA~~~~I~~~~----a~~l~-ak~I~EgAN~P 143 (293)
T d1hwxa1 107 -LEVDCDILIPAASEKQLTKSN----APRVK-AKIIAEGANGP 143 (293)
T ss_dssp -GGCCCSEEEECSSSSCBCTTT----GGGCC-CSEEECCSSSC
T ss_pred -ccCCccEEeeccccccccHHH----HHHHh-hCEEeccCCCC
Confidence 12489999987654433 222 22332 34677777754
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.95 E-value=0.33 Score=43.69 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=35.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+++.|-|+ +.+|.++|..|++.| .+|++++|+++.++++.+
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~G--a~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFG--AVIHTCARNEYELNECLS 50 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 4567778884 559999999999999 999999999988776654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.94 E-value=0.37 Score=43.55 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=35.4
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|.| ++.||.++|..|++.| .+|++.+|+++.++++.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~G--a~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEG--ANVTITGRSSERLEETRQ 47 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 45667777 5679999999999999 999999999988776655
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.91 E-value=0.083 Score=43.70 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=27.3
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||.|||+|..|.-+|..|++ + .+|+++++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~--~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-T--YEVTVIDKEP 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-T--SEEEEECSSS
T ss_pred eEEEECCcHHHHHHHHHHHc-C--CCEEEEeccc
Confidence 89999999999999999976 5 6999998753
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=90.80 E-value=0.07 Score=49.63 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=29.9
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|||.|.| .|.+|+.++..|.+.|. ++|+++|+...
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~-~~V~~ld~~~~ 36 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSD 36 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCc
Confidence 7999999 69999999999998882 48999988654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.73 E-value=0.21 Score=44.56 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=35.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|-|+ +.+|.++|..|++.| ++|++.+|+++.++++.+
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G--~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEG--ARLVACDIEEGPLREAAE 47 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 356666674 669999999999999 999999999988877665
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.55 E-value=0.21 Score=44.51 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=37.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH 172 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g 172 (460)
.+++.|.|+ +.+|.++|..|++.| ++|.+.+|+++.++++.++.
T Consensus 5 GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~ 49 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASG--AKVVAVTRTNSDLVSLAKEC 49 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhc
Confidence 467888885 569999999999999 99999999998888777653
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=2.3 Score=33.32 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=69.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+..||.|-|. |.-|+.-+.++.+.| .+|..- .++. +.|. . ..++-+.++.+|+++ ++|.
T Consensus 5 k~trVlvQGiTG~~G~~ht~~m~~yG--T~vVaG-VtPg------kgG~--------~-~~giPVf~sV~eAv~~~~~~~ 66 (119)
T d2nu7a1 5 KNTKVICQGFTGSQGTFHSEQAIAYG--TKMVGG-VTPG------KGGT--------T-HLGLPVFNTVREAVAATGATA 66 (119)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT--CEEEEE-ECTT------CTTE--------E-ETTEEEESSHHHHHHHHCCCE
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhC--CceEEE-EccC------CCCc--------c-cCCCchhhHHHHHHHHhCCCe
Confidence 4579999997 999999999999999 676632 2221 1111 1 123567788888765 6899
Q ss_pred EEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHH
Q 012596 203 CLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248 (460)
Q Consensus 203 VilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l 248 (460)
-++.||.... +.+++.+..-+ ..+|.++-|+.......+...+
T Consensus 67 SvIfVPp~~a~dA~~EAi~agI---~~iV~ITEgIP~~D~~~i~~~~ 110 (119)
T d2nu7a1 67 SVIYVPAPFCKDSILEAIDAGI---KLIITITEGIPTLDMLTVKVKL 110 (119)
T ss_dssp EEECCCGGGHHHHHHHHHHTTC---SEEEECCCCCCHHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHHHHHHCCC---CEEEEecCCCCHHHHHHHHHHH
Confidence 9999998765 45566665544 3778888888876443444443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=90.33 E-value=0.23 Score=44.21 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=53.3
Q ss_pred CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+++.|.|++. +|.++|..|+++| ++|++.+|+.+++++..++- +.+++.+
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~--------------------------~~~~~~~ 56 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREG--ASLVAVDREERLLAEAVAAL--------------------------EAEAIAV 56 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC--------------------------CSSEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHc--------------------------CCceEEE
Confidence 46777778655 9999999999999 99999999998776655421 0112222
Q ss_pred c---cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 A---MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 a---Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
. ...+.++.+++.+.....+=.++|+..
T Consensus 57 ~~Dls~~~~i~~~~~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 57 VADVSDPKAVEAVFAEALEEFGRLHGVAHFA 87 (241)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred EecCCCHHHHHHHHHHHHHHhCCccEecccc
Confidence 1 123456777777766555555677754
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=90.31 E-value=0.13 Score=47.91 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=29.1
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeC
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR 160 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r 160 (460)
|||.|+| .|-+|+.++..|.+.| ++|+++||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g--~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG--HDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc--CEEEEEEC
Confidence 7899999 7999999999999999 99999986
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=90.23 E-value=0.6 Score=41.91 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=50.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.+.+.|.| ++.+|.++|..|++.| ++|.+.+|+.+ .++.+.+. ..+ ...+++.
T Consensus 7 gK~alITGas~GIG~aia~~la~~G--~~Vv~~~r~~~~~~~~~~~~---------------------~~~--~g~~~~~ 61 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEK--AKVVVNYRSKEDEANSVLEE---------------------IKK--VGGEAIA 61 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHH---------------------HHH--TTCEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHH---------------------HHh--cCCcEEE
Confidence 34555556 6789999999999999 99999999854 44444331 111 1223333
Q ss_pred Ecc---chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAM---PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laV---p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+.+ ....++.+++++.+...+=.++|+..
T Consensus 62 ~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA 93 (261)
T d1geea_ 62 VKGDVTVESDVINLVQSAIKEFGKLDVMINNA 93 (261)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCCEeeccc
Confidence 322 23456677777665554445677654
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=90.10 E-value=0.46 Score=42.15 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=51.7
Q ss_pred CeEE-EECc-chHHHHHHHHHHhcCCCCe-------EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 128 NKVV-VLGG-GSFGTAMAAHVANKKSQLK-------VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 128 ~kI~-IIGa-G~mG~~~A~~La~~G~~~~-------V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
++|. |-|+ +.+|.++|..|++.| .+ |.+++|+++.++++.++ ..+ .
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G--~~~~~~~~~v~~~~r~~~~l~~~~~~---------------------~~~--~ 55 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAA--RHHPDFEPVLVLSSRTAADLEKISLE---------------------CRA--E 55 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHT--TTCTTCCEEEEEEESCHHHHHHHHHH---------------------HHT--T
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhC--ccccccCcEEEEEeCCHHHHHHHHHH---------------------HHh--c
Confidence 3554 4475 669999999999999 65 89999999887766542 111 1
Q ss_pred CCcEEEEccc---hhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 199 GADYCLHAMP---VQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 199 ~aDiVilaVp---~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
..+...+.+- ..+++.+++++.+...+=.++|+..
T Consensus 56 g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnA 93 (240)
T d2bd0a1 56 GALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNA 93 (240)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHHcCCcceeeccc
Confidence 2223333222 3456777777766655445677654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.10 E-value=0.3 Score=43.87 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
.+++.|-|+ +.+|.++|..|++.| ++|++.+|+.+..++..
T Consensus 9 gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~ 50 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAG--ANVAVIYRSAADAVEVT 50 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTT--EEEEEEESSCTTHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH
Confidence 355666675 459999999999999 99999999987655443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.09 E-value=0.24 Score=41.81 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=40.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN 174 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~ 174 (460)
+..+|.|+|+|.+|...+..+...|. ..|++.|+++++.+..++.|..
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa~ 74 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGAT 74 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCCc
Confidence 45789999999999999999988882 4799999999988888887753
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.04 E-value=0.099 Score=48.22 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.4
Q ss_pred CeEEEECcchHHHHHHHHHH-----hcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVA-----NKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La-----~~G~~~~V~v~~r~~ 162 (460)
-.|.|||+|..|.++|..|+ ++| ++|+++++.+
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G--~~v~vlEr~~ 45 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRS 45 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCC--CcEEEEcCCC
Confidence 57999999999999999997 467 8999999865
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.98 E-value=2.8 Score=33.31 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=67.0
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v-~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
.+..||.|-|. |.-|+.-+..+.+.| .+|+. +...+ .|. . ..++-+.++.+|+.+ ++
T Consensus 13 ~k~TrVivQGiTG~~G~~ht~~m~~YG--T~iVaGVtPgK--------gG~--------~-~~giPVf~tV~eA~~~~~~ 73 (130)
T d1euca1 13 DKNTKVICQGFTGKQGTFHSQQALEYG--TNLVGGTTPGK--------GGK--------T-HLGLPVFNTVKEAKEQTGA 73 (130)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHT--CEEEEEECTTC--------TTC--------E-ETTEEEESSHHHHHHHHCC
T ss_pred cCCCeEEEEcCCCcHHHHHHHHHHHhc--CCeEEeeccCC--------CCc--------c-ccCccchhhHHHHHHhcCC
Confidence 34579999997 999999999999999 77663 33321 111 1 124567788888875 79
Q ss_pred cEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCCccch
Q 012596 201 DYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 201 DiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
|.-++.||.... +.+++.+..-+ ..||.++-|+....
T Consensus 74 daSvIfVPp~~a~dAi~EAi~agI---~liV~ITEgIPv~D 111 (130)
T d1euca1 74 TASVIYVPPPFAAAAINEAIDAEV---PLVVCITEGIPQQD 111 (130)
T ss_dssp CEEEECCCHHHHHHHHHHHHHTTC---SEEEECCCCCCHHH
T ss_pred cEEEEecCHHHHHHHHHHHHhCCC---CEEEEecCCCCHHH
Confidence 999999998765 45666665544 37788888888653
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.98 E-value=0.12 Score=45.93 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=27.4
Q ss_pred CeEEE-EC-cchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVV-LG-GGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~I-IG-aG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|||.| -| ++.+|.++|..|++.| ++|++.+|++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G--a~V~~~~~~~ 35 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG--HQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCh
Confidence 55544 46 5679999999999999 9999999875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.91 E-value=0.59 Score=38.89 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=53.7
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCcc-CCCCCCCCceEEeCCHHhhc------
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTAL------ 197 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~-~~~~~l~~~i~a~~~~~ea~------ 197 (460)
...+|.|+| +|.+|..........| .+|++.++++++.+.+++.|..... ..+ .+..+.+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~lGa~~vi~~~~----------~d~~~~v~~~t~g 95 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKAGAWQVINYRE----------EDLVERLKEITGG 95 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCSEEEETTT----------SCHHHHHHHHTTT
T ss_pred CCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhcCCeEEEECCC----------CCHHHHHHHHhCC
Confidence 457899995 5558887777777777 8999999999999988887753110 000 1222211
Q ss_pred CCCcEEEEccchhcHHHHHHHh
Q 012596 198 LGADYCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i 219 (460)
...|+|+-++........+..+
T Consensus 96 ~g~d~v~d~~g~~~~~~~~~~l 117 (179)
T d1qora2 96 KKVRVVYDSVGRDTWERSLDCL 117 (179)
T ss_dssp CCEEEEEECSCGGGHHHHHHTE
T ss_pred CCeEEEEeCccHHHHHHHHHHH
Confidence 3468888888766555444443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.84 E-value=0.67 Score=38.36 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=51.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a 200 (460)
+..+|.|+|+|.+|...+..+...|. ..|++.++++++.+..++.|...... .. ...++..+.+ ..+
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~~~i~----~~---~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGATECIN----PQ---DFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCSEEEC----GG---GCSSCHHHHHHHHTTSCB
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCcEEEe----CC---chhhHHHHHHHHHcCCCC
Confidence 45789999999999988888877772 46777888888888777777531100 00 0001122111 468
Q ss_pred cEEEEccchhcH
Q 012596 201 DYCLHAMPVQFS 212 (460)
Q Consensus 201 DiVilaVp~~~~ 212 (460)
|+||-++-....
T Consensus 100 D~vid~~G~~~~ 111 (176)
T d2fzwa2 100 DYSFECIGNVKV 111 (176)
T ss_dssp SEEEECSCCHHH
T ss_pred cEeeecCCCHHH
Confidence 999999976544
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.79 E-value=2.9 Score=32.81 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=69.2
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+..||.|-|. |..|+.-+.++.+.| .+|..- .++. +.|. .+ .++-+.++.+|+++ ++|.
T Consensus 6 k~trVivQGiTG~~G~~ht~~m~~yG--T~iVaG-VtPg------kgG~--------~~-~giPVf~tV~eAv~~~~~d~ 67 (121)
T d1oi7a1 6 RETRVLVQGITGREGQFHTKQMLTYG--TKIVAG-VTPG------KGGM--------EV-LGVPVYDTVKEAVAHHEVDA 67 (121)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT--CEEEEE-ECTT------CTTC--------EE-TTEEEESSHHHHHHHSCCSE
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhC--CceEee-eecC------CCCc--------EE-ECCchHhhHHHHHHhcCCeE
Confidence 4568999996 999999999999998 666532 2221 1111 11 24567778888764 6899
Q ss_pred EEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 203 CLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 203 VilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
-++.||.... +.+++.+..-+ ..||.++-|+.......+.+.++
T Consensus 68 SvIfVPp~~a~dAi~EAi~agI---~liv~ITEgVPv~Dm~~i~~~~~ 112 (121)
T d1oi7a1 68 SIIFVPAPAAADAALEAAHAGI---PLIVLITEGIPTLDMVRAVEEIK 112 (121)
T ss_dssp EEECCCHHHHHHHHHHHHHTTC---SEEEECCSCCCHHHHHHHHHHHH
T ss_pred EEEeeCHHHHHHHHHHHHhCCC---cEEEEecCCCCHHHHHHHHHHHH
Confidence 9999997664 55666665543 36788888988754334444443
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.14 Score=47.08 Aligned_cols=31 Identities=13% Similarity=0.346 Sum_probs=28.7
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeC
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR 160 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r 160 (460)
+||.|.| .|-+|+.++..|.+.| ++|+.+++
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g--~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDG--HEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeC
Confidence 6899999 7899999999999999 99999986
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=89.73 E-value=0.27 Score=44.20 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=36.5
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+++.|-|++ .||.++|..|++.| .+|++.+|+++.++++.+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~ 47 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAG--ARVVLADVLDEEGAATAR 47 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 35778888865 69999999999999 999999999987776654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.31 Score=43.61 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=37.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
+.+.+.|-|+ +.||.++|..|++.| .+|++.+|+++.++++.++
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~ 49 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSG--ARVVICDKDESGGRALEQE 49 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh
Confidence 3567788884 789999999999999 9999999999888877765
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.58 E-value=0.13 Score=40.52 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~-~~~V~v~~r~~ 162 (460)
..+|+|||+|.+|.-+|..|.+-|. +.+|+++.+.+
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 5799999999999999987765441 26899998754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.58 E-value=0.69 Score=40.96 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=34.3
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+.|-| ++.+|.++|..|++.| ++|++.+|+++.++++.+
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G--~~Vv~~~r~~~~l~~~~~ 46 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARG--AKVIGTATSENGAQAISD 46 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 4455557 5679999999999999 999999999988877765
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.39 E-value=0.2 Score=39.19 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhc---CCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK---KSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~---G~~~~V~v~~r~~ 162 (460)
.++|+|||+|.+|.-+|..|++. | .+|+++.|.+
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g--~~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARG--GQVDLAYRGD 54 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTT--CEEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccc--cccceecccc
Confidence 57999999999999999877654 5 7999998864
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.32 E-value=0.11 Score=43.38 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=27.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
..+|.|||+|..|.-+|..|.+.| .+|+++.+.
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g--~~v~v~~~~ 35 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASG--WEGNIRLVG 35 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEEC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcC--CceEEEEec
Confidence 468999999999999999999998 676665443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.25 E-value=0.33 Score=41.00 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=54.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-----hcCCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-----ALLGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-----a~~~a 200 (460)
+...|.|+|+|.+|......+...|. .+|++.|+++++.+..++.|......+. . .....++ .-.++
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~~in~~-~------~~~~~~~~~~~~~g~G~ 100 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATECISPK-D------STKPISEVLSEMTGNNV 100 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSEEECGG-G------CSSCHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcEEECcc-c------cchHHHHHHHHhccccc
Confidence 45689999999999999999988872 4799999999999988887763211000 0 0001111 11468
Q ss_pred cEEEEccchhcH
Q 012596 201 DYCLHAMPVQFS 212 (460)
Q Consensus 201 DiVilaVp~~~~ 212 (460)
|++|.++-....
T Consensus 101 d~vi~~~g~~~~ 112 (176)
T d1d1ta2 101 GYTFEVIGHLET 112 (176)
T ss_dssp CEEEECSCCHHH
T ss_pred eEEEEeCCchHH
Confidence 999999886543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.22 E-value=0.31 Score=43.50 Aligned_cols=82 Identities=9% Similarity=0.001 Sum_probs=53.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+.+.|-|+ +.+|.++|..|++.| ++|++.+|++++++.+.++-. ..+.. -.+|+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~-----------~~~~~--------~~~Dv--- 61 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEG--AKVVFGDILDEEGKAMAAELA-----------DAARY--------VHLDV--- 61 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTG-----------GGEEE--------EECCT---
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhh-----------CcceE--------EEeec---
Confidence 355666675 669999999999999 999999999988877765310 00100 01121
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.....++++++++.+...+=.++|+..
T Consensus 62 -~~~~~v~~~~~~~~~~~g~idilinnA 88 (244)
T d1nffa_ 62 -TQPAQWKAAVDTAVTAFGGLHVLVNNA 88 (244)
T ss_dssp -TCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred -CCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 123557777777766555445677655
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.95 E-value=0.62 Score=41.38 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCCeEEEECcc---hHHHHHHHHHHhcCCCCeEEEEeCCHHHH
Q 012596 126 RTNKVVVLGGG---SFGTAMAAHVANKKSQLKVYMLMRDPAVC 165 (460)
Q Consensus 126 ~~~kI~IIGaG---~mG~~~A~~La~~G~~~~V~v~~r~~~~~ 165 (460)
+.+++.|-|++ .+|.++|..|++.| .+|.+.+|+++..
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~G--a~V~i~~~~~~~~ 47 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAG--AEVALSYQAERLR 47 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTT--CEEEEEESSGGGH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCC--CEEEEEeCcHHHH
Confidence 34678888874 49999999999999 9999999986543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.89 E-value=0.36 Score=40.21 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=53.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-----cCCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-----~~~a 200 (460)
+..+|.|+|+|.+|...+..++..| ...|++.++++++.+..++.|.......... .+...+. -..+
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~-------~~~~~~~~~~~~~~G~ 99 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVFGATDFVNPNDH-------SEPISQVLSKMTNGGV 99 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCCEEECGGGC-------SSCHHHHHHHHHTSCB
T ss_pred CCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHHcCCcEEEcCCCc-------chhHHHHHHhhccCCc
Confidence 4578999999999999999888877 3579999999999988888775311100000 0011111 1368
Q ss_pred cEEEEccchhcH
Q 012596 201 DYCLHAMPVQFS 212 (460)
Q Consensus 201 DiVilaVp~~~~ 212 (460)
|++|.++-....
T Consensus 100 d~vid~~G~~~~ 111 (175)
T d1cdoa2 100 DFSLECVGNVGV 111 (175)
T ss_dssp SEEEECSCCHHH
T ss_pred ceeeeecCCHHH
Confidence 999999976544
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=88.86 E-value=0.36 Score=43.74 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=35.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|-| ++.+|.++|..|++.| .+|.+.+|+++.++++.+
T Consensus 5 gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEG--AKVAVLDKSAERLAELET 47 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 45677778 4799999999999999 999999999988776654
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.80 E-value=0.77 Score=45.71 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=31.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..||.|||+|.+|+-++.+|+..|. ..++++|.+.
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GV-g~itivD~d~ 59 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGI-GSFTIIDGNQ 59 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence 4799999999999999999999996 4799998754
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=88.79 E-value=0.55 Score=41.36 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=59.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH--------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP--------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~--------~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
+..||.|+|+|.-|..+|..|.+.+. .+++++||.- ...+..+.... ...-+ .....++.+++
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~------~~~~~--~~~~~~l~~~l 95 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIA------RITNP--ERLSGDLETAL 95 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHH------HTSCT--TCCCSCHHHHH
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHH------hhhcc--hhhhcchHhhc
Confidence 35799999999999999999998884 6788999761 11111100000 00000 01123677888
Q ss_pred CCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 198 LGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 198 ~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
.++++++....... .++.+ .. +.++-+|..++|-.
T Consensus 96 ~g~~~~~g~~~~~~~~~e~m---~~-~~~rPIIFpLSNPt 131 (222)
T d1vl6a1 96 EGADFFIGVSRGNILKPEWI---KK-MSRKPVIFALANPV 131 (222)
T ss_dssp TTCSEEEECSCSSCSCHHHH---TT-SCSSCEEEECCSSS
T ss_pred cCcceeccccccccccHHHH---hh-cCCCCEEEecCCCc
Confidence 89998776654333 33332 22 34567888888844
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.78 E-value=0.15 Score=44.23 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=32.2
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|.+.-.|.|||+|.-|...|..+++.| .+|.++++..
T Consensus 2 m~~~yDviVIG~GpAGl~aA~~aa~~G--~kV~lie~~~ 38 (233)
T d1v59a1 2 INKSHDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRG 38 (233)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred CCcccCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecC
Confidence 334567999999999999999999999 9999999754
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=0.4 Score=34.97 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH 172 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g 172 (460)
+..+|.|.|+ |.+|......+...| .+|+...+++++.+.+++.|
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G--~~Vi~~t~s~~k~~~~~~lG 76 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKSLG 76 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHT
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcC--CeEEEEECCHHHHHHHHHCC
Confidence 4578999886 999998888777778 89999999998888887654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=88.56 E-value=0.12 Score=48.10 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeC
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR 160 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r 160 (460)
||||.|.| .|-+|+.++..|.++| ++|.++++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g--~~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNH--PDVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHC--TTCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCC--CCeEEEEE
Confidence 79999999 8999999999999999 77665554
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.33 E-value=0.33 Score=43.49 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=35.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
.+++.|-|+ +.+|.++|..|++.| ++|.+.+|+.+.++++.++
T Consensus 5 gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~ 48 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREG--ARVAIADINLEAARATAAE 48 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTT--EEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH
Confidence 356667775 789999999999999 9999999999888776553
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=88.29 E-value=0.12 Score=43.79 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||.|..|..-|..+++.| .+|+++++..
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g--~~v~iie~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC--CceEEEEeec
Confidence 468999999999999999999999 8999998654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=88.28 E-value=0.27 Score=44.23 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=56.4
Q ss_pred CCeEEEECcch--HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhc--CCCc
Q 012596 127 TNKVVVLGGGS--FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTAL--LGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~--mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~--~~aD 201 (460)
.++|.=+|+|. +...+|..+...| .|+.++++++.++..+++-... ....++... .|..+.+ ..+|
T Consensus 86 G~rVLEiG~GsG~lt~~la~~v~~~g---~V~~vD~~e~~~~~A~~n~~~~------~~~~nv~~~~~Di~~~~~~~~fD 156 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEF------YDIGNVRTSRSDIADFISDQMYD 156 (250)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTT------SCCTTEEEECSCTTTCCCSCCEE
T ss_pred cCEEEEeeeeCcHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHh------cCCCceEEEEeeeecccccceee
Confidence 47888888665 4445555554444 8999999998777665531110 001123322 2343333 3479
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.|++-+|... .+++.+...+++|..++..
T Consensus 157 ~V~ld~p~p~--~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 157 AVIADIPDPW--NHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EEEECCSCGG--GSHHHHHHTEEEEEEEEEE
T ss_pred eeeecCCchH--HHHHHHHHhcCCCceEEEE
Confidence 9999887543 3455566667777776654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=88.24 E-value=0.35 Score=42.63 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=33.6
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ 166 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~ 166 (460)
+.+++.|-|+ +.||.++|..|++.| ++|.+.+|+++.++
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~G--a~V~~~~r~~~~l~ 42 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEG--AEVTICARNEELLK 42 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHH
Confidence 4578889995 669999999999999 99999999987554
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.15 E-value=0.29 Score=43.91 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=35.2
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
.+++.|-| ++.+|.++|..|++.| .+|++.+|+++.++++.++
T Consensus 6 gK~alITGas~GIG~aia~~la~~G--a~V~~~~~~~~~~~~~~~~ 49 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEG--AKVAFSDINEAAGQQLAAE 49 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH
Confidence 35566667 5569999999999999 9999999999888776653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=87.95 E-value=0.24 Score=45.81 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=32.7
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+.+||.|.| .|-+|+.++..|.+.| ++|++++|+..
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g--~~V~~~~r~~~ 43 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMG--ATVKGYSLTAP 43 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence 358999999 8899999999999999 99999999764
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.75 E-value=0.79 Score=38.90 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=50.5
Q ss_pred CCeEEEEC-c-chHHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012596 127 TNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRDP-----AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (460)
Q Consensus 127 ~~kI~IIG-a-G~mG~~~A~~La~~G~~~~V~v~~r~~-----~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~ 199 (460)
..||++|| + -++...+...++.-| .+|+++.... +..+.+.+.... ....+..++++++++++
T Consensus 5 ~lkia~vGD~~nnV~~Sli~~~~~~G--~~l~l~~P~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~eai~~ 74 (185)
T d1dxha2 5 DISYAYLGDARNNMGNSLLLIGAKLG--MDVRIAAPKALWPHDEFVAQCKKFAEE--------SGAKLTLTEDPKEAVKG 74 (185)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTT--CEEEEECCGGGSCCHHHHHHHHHHHHH--------HTCEEEEESCHHHHTTT
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHcC--CEEEEEccHHHHhhhHHHHHHHHHhhc--------cCCeEEEEeChhhcccc
Confidence 57999999 4 489999999999988 8999998642 223333221000 01246788999999999
Q ss_pred CcEEEEcc
Q 012596 200 ADYCLHAM 207 (460)
Q Consensus 200 aDiVilaV 207 (460)
+|+|..-+
T Consensus 75 aDvVyt~~ 82 (185)
T d1dxha2 75 VDFVHTDV 82 (185)
T ss_dssp CSEEEECC
T ss_pred ccEEEeeh
Confidence 99988755
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=87.70 E-value=1.2 Score=36.74 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=49.8
Q ss_pred CCCeEEEEC-c-chHHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHH---HH-hhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRDP-----AVCQS---IN-EKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIG-a-G~mG~~~A~~La~~G~~~~V~v~~r~~-----~~~~~---l~-~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
+..||++|| + .++-.++...+++-| .+++++.... +..+. +. +.+ ..+..++|++
T Consensus 2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g--~~i~~~~P~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~d~~ 67 (161)
T d1vlva2 2 KGVKVVFMGDTRNNVATSLMIACAKMG--MNFVACGPEELKPRSDVFKRCQEIVKETD------------GSVSFTSNLE 67 (161)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHTT--CEEEEESCGGGCCCHHHHHHHHHHHHHHC------------CEEEEESCHH
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHHcC--CEEEEecchhhhhhhhHHHHHHHHHhhcC------------CceEEEecHH
Confidence 357999999 3 579999999999888 8999887643 22221 11 112 2467888999
Q ss_pred hhcCCCcEEEEcc
Q 012596 195 TALLGADYCLHAM 207 (460)
Q Consensus 195 ea~~~aDiVilaV 207 (460)
++++++|+|..-.
T Consensus 68 ~ai~~aDviyt~~ 80 (161)
T d1vlva2 68 EALAGADVVYTDV 80 (161)
T ss_dssp HHHTTCSEEEECC
T ss_pred Hhhhhhhheeccc
Confidence 9999999999865
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.66 E-value=0.82 Score=38.29 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=59.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-----cCC
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLG 199 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-----~~~ 199 (460)
+..+|.|.|+ |.+|.+........| .+|+..++++++.+.+++.|....+.... .+..+.. -..
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~Ga~~vi~~~~--------~~~~~~~~~~~~~~G 98 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQIGFDAAFNYKT--------VNSLEEALKKASPDG 98 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETTS--------CSCHHHHHHHHCTTC
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhhhhhhhccccc--------ccHHHHHHHHhhcCC
Confidence 4578999998 557776666666667 89999999999998888877532111000 0011111 246
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.|+||=++..... ++..+.++++..++.+
T Consensus 99 vd~v~D~vG~~~~----~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 99 YDCYFDNVGGEFL----NTVLSQMKDFGKIAIC 127 (182)
T ss_dssp EEEEEESSCHHHH----HHHGGGEEEEEEEEEC
T ss_pred CceeEEecCchhh----hhhhhhccCCCeEEee
Confidence 8999999975433 3444555555566655
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.65 E-value=0.27 Score=40.34 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=29.1
Q ss_pred CeEEEE--CcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVL--GGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~II--GaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.++.|+ |.|.+|.-+|..|++.| ++|+++.+.+.
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G--~~Vtlv~~~~~ 75 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVHL 75 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSCT
T ss_pred CceEEEecCCChHHHHHHHHHHHcC--CeEEEEecCCc
Confidence 445555 99999999999999999 99999998753
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=87.53 E-value=0.22 Score=42.83 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=29.1
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
.|.|||+|.-|...|..+++.| .+|.+++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G--~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYG--QKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--CCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CEEEEEecc
Confidence 5899999999999999999999 899999875
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.51 E-value=0.33 Score=42.95 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=33.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+.+.|-| ++.+|.++|..|++.| ++|++.+|+.+.++.+.+
T Consensus 5 GKvalITGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQG--ASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECTTSSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH
Confidence 45566777 5569999999999999 999999999877665544
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=87.41 E-value=0.3 Score=43.35 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=32.8
Q ss_pred CCCeEEEECcch---HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012596 126 RTNKVVVLGGGS---FGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (460)
Q Consensus 126 ~~~kI~IIGaG~---mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l 168 (460)
+.++|.|.|++. +|.++|..|++.| ++|++.+|+++..+.+
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G--~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREG--AELAFTYQNDKLKGRV 47 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTT--CEEEEEESSTTTHHHH
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH
Confidence 457788888754 8999999999999 9999999986544433
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.19 E-value=1.2 Score=39.38 Aligned_cols=98 Identities=16% Similarity=0.104 Sum_probs=55.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEe-C----------CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLM-R----------DPAVCQSINEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~-r----------~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
+.++|+|=|.|++|...|..|++ .| ..|+.++ . +.+.+..+.+....... .+ ..+.. +.
T Consensus 30 ~g~~vaIqG~GnVG~~~a~~L~~e~G--a~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~-----~~-~~~~~-~~ 100 (234)
T d1b26a1 30 KKATVAVQGFGNVGQFAALLISQELG--SKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVT-----YP-KGERI-TN 100 (234)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHHC--CEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTT-----CS-SCEEE-CH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcC--CceEEeecCCCcEEeccccchHHHHHHHHhhcceec-----cc-cceee-cc
Confidence 46899999999999999999974 57 6776544 1 22334444443221111 11 12222 34
Q ss_pred HhhcC-CCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 194 KTALL-GADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 194 ~ea~~-~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++... +||+++-|--...+ .+-++. ++ -.+|+-..|+-.
T Consensus 101 ~~~~~~~~DI~~PcA~~~~I~~~~a~~----l~-~~~I~e~AN~p~ 141 (234)
T d1b26a1 101 EELLELDVDILVPAALEGAIHAGNAER----IK-AKAVVEGANGPT 141 (234)
T ss_dssp HHHHTSCCSEEEECSCTTCBCHHHHTT----CC-CSEEECCSSSCB
T ss_pred ccccccccceeecchhcccccHHHHHH----hh-hceEeecCCCCC
Confidence 44444 89999877554443 333333 32 246776777543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.18 E-value=0.42 Score=43.21 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=34.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|-|+ +.+|.++|..|++.| .+|++.+|+++.++++.+
T Consensus 4 gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEG--AQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 456777774 569999999999999 999999999987776654
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=86.93 E-value=1.4 Score=39.01 Aligned_cols=41 Identities=10% Similarity=0.272 Sum_probs=31.3
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l 168 (460)
+.+.|.|-|++ .+|..+|..|++.| .+|++.+|+.+..+.+
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G--~~vii~~r~~~~~~~~ 45 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRN--LKNFVILDRVENPTAL 45 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTC--CSEEEEEESSCCHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCcccHHHH
Confidence 34678888865 69999999999999 8888887765544333
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=86.55 E-value=0.29 Score=44.09 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=29.9
Q ss_pred CeEEEECcchHHHHHHHHHHhc-CCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~-G~~~~V~v~~r~~ 162 (460)
..|.|||+|.-|...|..|++. | ++|+++++.+
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G--~~V~vlE~~~ 67 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSV 67 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHccC--CeEEEEecCC
Confidence 4699999999999999999874 8 9999999875
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.53 E-value=0.24 Score=42.11 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
..+|.|||+|.-|..-|..+++.| .+|+++++.
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g--~~v~vie~~ 37 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGW 37 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCS
T ss_pred cceEEEECCCHHHHHHHHHHHHcC--CcEEEEEee
Confidence 478999999999999999999999 899999754
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=86.52 E-value=0.27 Score=45.53 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
.-.+.|||+|.-|..+|.+|+++| ++|.++.+.
T Consensus 4 ~yDviIVGsG~aG~v~A~~La~~G--~kVlvLEaG 36 (379)
T d2f5va1 4 KYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIG 36 (379)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred cccEEEECcCHHHHHHHHHHhhCC--CeEEEEecC
Confidence 346999999999999999999999 999999864
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=86.50 E-value=0.37 Score=40.24 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=25.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEe
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM 159 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~ 159 (460)
.+|.|||+|..|.-+|..|.+.|....+++..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~ 35 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVG 35 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence 57999999999999999999998433444443
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=86.39 E-value=0.51 Score=39.87 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=60.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhh---cCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTA---LLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea---~~~aDi 202 (460)
..+|.=||+|.=+.++ .|++.+ .+|+.+|.+++.++..+++-.. ..+..++++ ..|..+. ...+|+
T Consensus 34 g~~VLDiGcGsG~~s~--~lA~~~--~~V~avD~~~~~l~~a~~n~~~------~gl~~~v~~~~gda~~~~~~~~~~D~ 103 (186)
T d1l3ia_ 34 NDVAVDVGCGTGGVTL--ELAGRV--RRVYAIDRNPEAISTTEMNLQR------HGLGDNVTLMEGDAPEALCKIPDIDI 103 (186)
T ss_dssp TCEEEEESCTTSHHHH--HHHTTS--SEEEEEESCHHHHHHHHHHHHH------TTCCTTEEEEESCHHHHHTTSCCEEE
T ss_pred CCEEEEEECCeEcccc--cccccc--eEEEEecCCHHHHHHHHHHHHH------cCCCcceEEEECchhhcccccCCcCE
Confidence 3566667777654443 355656 6899999999877666543110 011223433 2344433 357899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEE
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
|++.-+.....++++.+...++++..++
T Consensus 104 v~~~~~~~~~~~~~~~~~~~LkpgG~lv 131 (186)
T d1l3ia_ 104 AVVGGSGGELQEILRIIKDKLKPGGRII 131 (186)
T ss_dssp EEESCCTTCHHHHHHHHHHTEEEEEEEE
T ss_pred EEEeCccccchHHHHHHHHHhCcCCEEE
Confidence 9998887788889999888888876554
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.05 E-value=0.39 Score=42.01 Aligned_cols=101 Identities=9% Similarity=0.002 Sum_probs=61.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCc------cCCCCC----CCCceEE-eCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR------YFPEQK----LPENVIA-TTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~------~~~~~~----l~~~i~a-~~~~~ 194 (460)
...||..+|+|. +..+..|++.| ++|+.+|.++..++.++++..... ..+... ...++.+ ..|..
T Consensus 45 ~~~rvLd~GCG~--G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 45 SGLRVFFPLCGK--AVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CSCEEEETTCTT--CTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCEEEEeCCCC--cHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 357999999999 46789999999 999999999988877665422100 000000 0112222 12322
Q ss_pred hh----cCCCcEEEEc-----cchhcHHHHHHHhhhcCCCCCeEE
Q 012596 195 TA----LLGADYCLHA-----MPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 195 ea----~~~aDiVila-----Vp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
+. ....|+|+.+ ++......+++++...++||..++
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~ 165 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL 165 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEE
Confidence 21 2345777643 344556677888888888876543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=86.02 E-value=0.5 Score=42.11 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ 166 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~ 166 (460)
.+.+.|-| .+.||.++|..|++.| ++|.+.+|+++..+
T Consensus 5 GK~alITGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~ 43 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREG--ALVALCDLRPEGKE 43 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSTTHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHH
Confidence 45666667 7889999999999999 99999999986544
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=85.55 E-value=1.8 Score=38.35 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=30.3
Q ss_pred CeEEEE--CcchHHHHHHHHHHhcCCCCeEEEEeC-CHHHHHHHH
Q 012596 128 NKVVVL--GGGSFGTAMAAHVANKKSQLKVYMLMR-DPAVCQSIN 169 (460)
Q Consensus 128 ~kI~II--GaG~mG~~~A~~La~~G~~~~V~v~~r-~~~~~~~l~ 169 (460)
|-|+|| |++.+|.++|..|++.| .+|++.++ +.+..+++.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~G--a~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEG--YAVCLHYHRSAAEANALS 44 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHH
Confidence 347777 45789999999999999 99998765 455555443
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=85.55 E-value=0.33 Score=45.21 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=28.8
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
.|.|||+|.-|+.+|.+|+++| ++|.++.+.
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAG--VQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHCc--CeEEEEecC
Confidence 4789999999999999999999 999999875
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=85.51 E-value=0.32 Score=41.66 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=29.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
-.|.|||+|.-|...|..+++.| .+|+++++..
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G--~kV~vie~~~ 36 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRG 36 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecC
Confidence 46899999999999999999999 8999998753
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=85.20 E-value=0.31 Score=42.57 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.9
Q ss_pred eEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
++.|-| ++.+|.++|..|++.| ++|++.+|++
T Consensus 3 ~alITGas~GIG~aiA~~la~~G--a~V~i~~~~~ 35 (241)
T d1uaya_ 3 SALVTGGASGLGRAAALALKARG--YRVVVLDLRR 35 (241)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHT--CEEEEEESSC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCc
Confidence 344445 5899999999999999 9999999975
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=0.42 Score=39.66 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=28.3
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
.|.|||+|..|...|..+++.| .+|.++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G--~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKG--IRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--CCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcC--CeEEEEEEe
Confidence 5899999999999999999999 899999864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=84.93 E-value=1.9 Score=38.42 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh----hcCCCccCCCCCCCCceEEeCCHHhhc--CC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE----KHCNCRYFPEQKLPENVIATTDAKTAL--LG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~----~g~~~~~~~~~~l~~~i~a~~~~~ea~--~~ 199 (460)
+.++|.=+|+|. |. ++..+++.| .+|+.+|.++..++..++ ++.+.+ + ...+..+.. ..
T Consensus 120 ~g~~VLDiGcGs-G~-l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~~----------~-~~~d~~~~~~~~~ 184 (254)
T d2nxca1 120 PGDKVLDLGTGS-GV-LAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPR----------F-LEGSLEAALPFGP 184 (254)
T ss_dssp TTCEEEEETCTT-SH-HHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCE----------E-EESCHHHHGGGCC
T ss_pred ccCEEEEcccch-hH-HHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCcee----------E-Eeccccccccccc
Confidence 357888899997 43 455677778 899999999987665544 232211 1 223444333 46
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
+|+|+...-.....++++.+...++||..++. .|+..+....+.+.+.
T Consensus 185 fD~V~ani~~~~l~~l~~~~~~~LkpGG~lil--Sgil~~~~~~v~~~~~ 232 (254)
T d2nxca1 185 FDLLVANLYAELHAALAPRYREALVPGGRALL--TGILKDRAPLVREAMA 232 (254)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHEEEEEEEEE--EEEEGGGHHHHHHHHH
T ss_pred cchhhhccccccHHHHHHHHHHhcCCCcEEEE--EecchhhHHHHHHHHH
Confidence 89998877777778888888888888766543 2454433333333443
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=84.91 E-value=0.34 Score=44.02 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=30.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
-.|.|||+|.-|...|..|+++| .+|+++++.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G--~~V~lvEK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSG--AKVILIEKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 46999999999999999999999 8999999764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.90 E-value=1.3 Score=39.47 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=33.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHH
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~-~~~~~l~ 169 (460)
+.+++.|-| .+.+|.++|..|++.| ++|++.+++. +.++.+.
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~G--a~Vvi~~~~~~~~~~~~~ 60 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRG--CKVIVNYANSTESAEEVV 60 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCchHHHHHHH
Confidence 346777888 7899999999999999 9999988764 4444443
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.40 E-value=1.9 Score=38.08 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHh-cCCCCeEEE-EeCC----------HHHHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYM-LMRD----------PAVCQSINEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v-~~r~----------~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
+.++|+|-|.|++|..+|+.|++ .| ..|+. .|.+ .+.+.+....+.....+ +. .... +.
T Consensus 31 ~g~~v~IqGfGnVG~~~a~~L~~~~G--~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~-----~~-~~~~-~~ 101 (239)
T d1gtma1 31 KGKTIAIQGYGNAGYYLAKIMSEDFG--MKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDF-----PG-ATNI-TN 101 (239)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC--CEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTC-----TT-SEEE-CH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcC--cceeeccccccceecCCcCCHHHHHHHHHhccccccC-----CC-Ceee-cc
Confidence 45899999999999999999975 46 66553 3332 23333333332222211 11 1221 23
Q ss_pred Hhhc-CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 194 KTAL-LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 194 ~ea~-~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++.+ .+||+++-|-....+.. +..+.++ -.+|+-..|+-.
T Consensus 102 ~~i~~~~~DIl~PcA~~~~I~~---~~a~~i~-ak~I~e~AN~p~ 142 (239)
T d1gtma1 102 EELLELEVDVLAPAAIEEVITK---KNADNIK-AKIVAEVANGPV 142 (239)
T ss_dssp HHHHHSCCSEEEECSCSCCBCT---TGGGGCC-CSEEECCSSSCB
T ss_pred cccccccccEEeeccccccccH---HHHHhcc-ccEEEecCCCCC
Confidence 3332 47999888766543321 1222232 346666666543
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.17 E-value=0.38 Score=41.42 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=29.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
..|.|||+|..|...|..+++.| .+|++++++
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G--~~V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHHCC--CcEEEEecC
Confidence 57999999999999999999999 899999875
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=84.00 E-value=0.83 Score=40.55 Aligned_cols=39 Identities=10% Similarity=-0.054 Sum_probs=31.6
Q ss_pred EEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 130 VVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 130 I~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
..|-|++ .+|.++|..|++.| ++|.+.+|+.+..+++.+
T Consensus 3 AlVTGas~GiG~aiA~~la~~G--a~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 3 AIVTNVKHFGGMGSALRLSEAG--HTVACHDESFKQKDELEA 42 (252)
T ss_dssp EEESSTTSTTHHHHHHHHHHTT--CEEEECCGGGGSHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHh
Confidence 4456654 49999999999999 999999999877776654
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=83.93 E-value=0.41 Score=41.32 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAV 164 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~-~~~V~v~~r~~~~ 164 (460)
+||.|||.|.-|+-+..+|.+.|. +.+...++-|...
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~ 38 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQV 38 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHH
Confidence 689999999999999999999874 1244455555543
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.76 E-value=0.48 Score=44.60 Aligned_cols=31 Identities=32% Similarity=0.533 Sum_probs=28.4
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEe
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM 159 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~ 159 (460)
.|||.|.| +|-+|+.++..|.+.| ++|+++|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g--~~V~~iD 32 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN--YEVCIVD 32 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEe
Confidence 38999999 7999999999999999 9999997
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=83.69 E-value=0.47 Score=41.11 Aligned_cols=33 Identities=42% Similarity=0.501 Sum_probs=30.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
-.|.|||+|.-|...|..+++.| .+|.++++.+
T Consensus 7 yDviIIG~GPaGlsaA~~aa~~G--~~V~viE~~~ 39 (229)
T d1ojta1 7 YDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYK 39 (229)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccC
Confidence 35899999999999999999999 8999998754
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.49 E-value=2 Score=34.98 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=50.8
Q ss_pred CCeEEEECc---chHHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 127 TNKVVVLGG---GSFGTAMAAHVANKKSQLKVYMLMRDP-----AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 127 ~~kI~IIGa---G~mG~~~A~~La~~G~~~~V~v~~r~~-----~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
..||+|||= +++...++..+.+-| .+++++.... +..+.+.+.+. .+..++|++++++
T Consensus 4 gl~i~~vGD~~~srV~~Sli~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~~~------------~~~~~~d~~~av~ 69 (157)
T d1ml4a2 4 GLKIGLLGDLKYGRTVHSLAEALTFYD--VELYLISPELLRMPRHIVEELREKGM------------KVVETTTLEDVIG 69 (157)
T ss_dssp SEEEEEESCTTTCHHHHHHHHHGGGSC--EEEEEECCGGGCCCHHHHHHHHHTTC------------CEEEESCTHHHHT
T ss_pred CCEEEEEcCCccChHHHHHHHHHHhcC--CcEEEEccchhhcchHHHHHHHhhcc------------cceeecCHHHhhc
Confidence 579999997 689999999999888 8999888643 22333333332 3567789999999
Q ss_pred CCcEEEEccc
Q 012596 199 GADYCLHAMP 208 (460)
Q Consensus 199 ~aDiVilaVp 208 (460)
++|+|..-.-
T Consensus 70 ~aDvvy~~~~ 79 (157)
T d1ml4a2 70 KLDVLYVTRI 79 (157)
T ss_dssp TCSEEEECCC
T ss_pred cCcEEEeecc
Confidence 9998877553
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=83.41 E-value=1.3 Score=38.13 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=59.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDi 202 (460)
...||.=||+|. +.++..|++.| .+|+.+|.++..++.+++++.... ...+..+. -...|+
T Consensus 42 ~~~~vLDiGcG~--G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~------------~~~~~~~l~~~~~~fD~ 105 (246)
T d2avna1 42 NPCRVLDLGGGT--GKWSLFLQERG--FEVVLVDPSKEMLEVAREKGVKNV------------VEAKAEDLPFPSGAFEA 105 (246)
T ss_dssp SCCEEEEETCTT--CHHHHHHHTTT--CEEEEEESCHHHHHHHHHHTCSCE------------EECCTTSCCSCTTCEEE
T ss_pred CCCEEEEECCCC--chhcccccccc--eEEEEeeccccccccccccccccc------------ccccccccccccccccc
Confidence 457899999993 45667888888 899999999998888877653211 11122221 135788
Q ss_pred EEEccch----hcHHHHHHHhhhcCCCCCeEE
Q 012596 203 CLHAMPV----QFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 203 VilaVp~----~~~~~vl~~i~~~l~~~~iIV 230 (460)
|+..-.. .....+++++...+++|.+++
T Consensus 106 ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~i 137 (246)
T d2avna1 106 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 137 (246)
T ss_dssp EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeecchhhhhhhHHHHHHHHHhhcCcCcEEE
Confidence 8864331 245668888988888876554
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.38 E-value=0.55 Score=37.73 Aligned_cols=35 Identities=20% Similarity=0.478 Sum_probs=28.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHh----cCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVAN----KKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~----~G~~~~V~v~~r~~ 162 (460)
..++|.|||+|..|.-+|..|++ .| .+|+++.+.+
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g--~~Vt~i~~~~ 74 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALG--TEVIQLFPEK 74 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcC--CEEEEecccc
Confidence 35799999999999999998864 46 8999987654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.26 E-value=0.57 Score=43.13 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=28.5
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeC
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR 160 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r 160 (460)
+||.|.| .|-+|+.++..|.++| ++|+++|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g--~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAG--YLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCc--CEEEEEEC
Confidence 6899999 7999999999999999 99999874
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.15 E-value=0.52 Score=40.32 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=29.2
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+.|||+|..|...|..+++.| .+|.+++++.
T Consensus 5 DviIIG~GpaG~~aA~~aar~G--~kV~vIEk~~ 36 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELG--ARAAVVESHK 36 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CEEEEEeccC
Confidence 5899999999999999999999 8999998753
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=83.12 E-value=0.45 Score=44.37 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=29.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
-.+.|||+|.-|+.+|.+|+++| .+|.++.+.
T Consensus 8 ~dvIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG 39 (370)
T d3coxa1 8 VPALVIGSGYGGAVAALRLTQAG--IPTQIVEMG 39 (370)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 35889999999999999999999 999999874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.00 E-value=0.71 Score=41.72 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=57.8
Q ss_pred CCeEEEEC--cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhh---cCCC
Q 012596 127 TNKVVVLG--GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTA---LLGA 200 (460)
Q Consensus 127 ~~kI~IIG--aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea---~~~a 200 (460)
.++|.=+| .|.+...+|..+...| .|+.++.+++.++..+++-... .. ....++.. ..|..+. -..+
T Consensus 97 G~~VLE~G~GsG~lt~~La~~vgp~G---~V~~~d~~~~~~~~Ar~n~~~~--~~--~~~~nv~~~~~d~~~~~~~~~~f 169 (264)
T d1i9ga_ 97 GARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGC--YG--QPPDNWRLVVSDLADSELPDGSV 169 (264)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHH--HT--SCCTTEEEECSCGGGCCCCTTCE
T ss_pred CCEEEecCcCCcHHHHHHHHhhCCCc---EEEEecCCHHHHHHHHHhhhhh--cc--CCCceEEEEecccccccccCCCc
Confidence 46666665 5667777777777666 7999999998877665421100 00 01112322 2233321 1357
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|.||+-+|... .+++.+...|++|..++...
T Consensus 170 DaV~ldlp~P~--~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 170 DRAVLDMLAPW--EVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp EEEEEESSCGG--GGHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEecCCHH--HHHHHHHhccCCCCEEEEEe
Confidence 99999888653 33455666677777776654
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.62 E-value=0.66 Score=41.05 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=34.4
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
..+.|.|-| .+.+|.++|..|++.|....|++.+|+.++++++.+
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~ 47 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence 346777777 578999999999999832368888999877766554
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.56 E-value=0.7 Score=38.63 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKK 150 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G 150 (460)
++.+|+++|.|.+|+.+...|.++.
T Consensus 3 k~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 3 KVVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHhH
Confidence 5679999999999999999998765
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=82.42 E-value=0.47 Score=43.45 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=30.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..|.|||+|.-|...|..|+++| .+|+++.+.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G--~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTT--CCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 56999999999999999999999 8999999764
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.30 E-value=1.4 Score=33.89 Aligned_cols=68 Identities=10% Similarity=-0.060 Sum_probs=48.3
Q ss_pred CeEEEECc----------chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 128 NKVVVLGG----------GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 128 ~kI~IIGa----------G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
++|||+|+ ..-..-+...|.+.| .+|.+||..-.. .....+.....++.+++
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g--~~v~iyDP~v~~----------------~~~~~~~~~~~~l~~~~ 77 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKD--IKIIIYEPMLNK----------------LESEDQSVLVNDLENFK 77 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSS--CEEEEECTTCSC----------------CCTTCCSEECCCHHHHH
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhccc--cceeeecCCcCh----------------hHhccCCEEEeCHHHHH
Confidence 58999998 467788899999888 899999875310 01112345667899988
Q ss_pred CCCcEEEEccchhcHH
Q 012596 198 LGADYCLHAMPVQFSS 213 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~ 213 (460)
..+|+||+......+.
T Consensus 78 ~~sDiII~~~~~~~~~ 93 (108)
T d1dlja3 78 KQANIIVTNRYDNELQ 93 (108)
T ss_dssp HHCSEEECSSCCGGGG
T ss_pred hhCCEEEEcCCchHHH
Confidence 9999887766554443
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.12 E-value=0.66 Score=42.66 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=31.2
Q ss_pred hccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeC
Q 012596 123 ILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR 160 (460)
Q Consensus 123 ~~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r 160 (460)
+.+++++|.|.| .|-+|+.++..|.+.| ++|+++|+
T Consensus 12 ~~~~~k~iLVTG~tGfIGs~lv~~L~~~g--~~V~~~d~ 48 (341)
T d1sb8a_ 12 LPAQPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDN 48 (341)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCc--CEEEEEEC
Confidence 344567899888 7999999999999999 99999986
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.08 E-value=0.6 Score=39.74 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=29.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..|.|||+|..|...|..+++.| .+|.++++..
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G--~kV~vIEk~~ 36 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKGN 36 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEecCC
Confidence 46899999999999999999999 8999998763
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=82.06 E-value=0.92 Score=40.34 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=31.2
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~-~r~~~~~~~l~~ 170 (460)
.+.+.|.| +|.+|.++|..|++.| ++|++. .++.+..+++.+
T Consensus 6 GK~alITGas~GIG~aia~~la~~G--~~Vvi~~~~~~~~~~~~~~ 49 (259)
T d1ja9a_ 6 GKVALTTGAGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVA 49 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEcCCChHHHHHHHH
Confidence 45666676 5669999999999999 999975 556655555443
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=81.66 E-value=0.55 Score=44.02 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=28.6
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
.+.|||+|.-|+.+|.+|+++| .+|.++.+.
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g--~~VlvLEaG 34 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAG--KKVLLLERG 34 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHhhCC--CeEEEEEcc
Confidence 4789999999999999999999 899999876
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.57 E-value=2.5 Score=34.76 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=46.8
Q ss_pred CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRD-----PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~-----~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
..||++||-| ++..+++..|.+-| .+|+++... ++..+.+.+.+.. ....+..+.++.++++++
T Consensus 4 gl~Ia~VGD~~nv~~Sli~~l~~~g--~~v~~~~P~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~ea~~~a 73 (163)
T d1pvva2 4 GVKVVYVGDGNNVAHSLMIAGTKLG--ADVVVATPEGYEPDEKVIKWAEQNAAE--------SGGSFELLHDPVKAVKDA 73 (163)
T ss_dssp TCEEEEESCCCHHHHHHHHHHHHTT--CEEEEECCTTCCCCHHHHHHHHHHHHH--------HTCEEEEESCHHHHTTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcC--CeEEEecccccCCChHHHHHHHHhhhc--------ccceEEEecCHHHHhhhc
Confidence 5799999964 46667777777767 899988753 2333333332110 012356788999999999
Q ss_pred cEEEEcc
Q 012596 201 DYCLHAM 207 (460)
Q Consensus 201 DiVilaV 207 (460)
|+|..-.
T Consensus 74 dviy~~~ 80 (163)
T d1pvva2 74 DVIYTDV 80 (163)
T ss_dssp SEEEECC
T ss_pred cEEeecc
Confidence 9988653
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| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=81.24 E-value=1.5 Score=37.06 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=57.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh----cCCCccCCCCCCCCceEEeCCHHhh---cC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK----HCNCRYFPEQKLPENVIATTDAKTA---LL 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~----g~~~~~~~~~~l~~~i~a~~~~~ea---~~ 198 (460)
+..||.=||+|.-. ++..|++.| .+|+.+|.+++.++..++. +.... ....|..+. -.
T Consensus 37 ~~~~ILDiGcG~G~--~~~~la~~~--~~v~giD~S~~~i~~ak~~~~~~~~~~~-----------~~~~d~~~l~~~~~ 101 (226)
T d1ve3a1 37 KRGKVLDLACGVGG--FSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRESNVE-----------FIVGDARKLSFEDK 101 (226)
T ss_dssp SCCEEEEETCTTSH--HHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCE-----------EEECCTTSCCSCTT
T ss_pred CCCEEEEECCCcch--hhhhHhhhh--cccccccccccchhhhhhhhcccccccc-----------ccccccccccccCc
Confidence 34689999999833 566788888 8999999998877655432 21111 112222221 13
Q ss_pred CCcEEEEcc-----chhcHHHHHHHhhhcCCCCCe-EEEec
Q 012596 199 GADYCLHAM-----PVQFSSSFLEGISDYVDPGLP-FISLS 233 (460)
Q Consensus 199 ~aDiVilaV-----p~~~~~~vl~~i~~~l~~~~i-IV~~~ 233 (460)
..|+|+..- +......+++++...++||.. ++...
T Consensus 102 ~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 102 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 468887642 233455678899999988764 44443
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| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.17 E-value=0.54 Score=40.68 Aligned_cols=31 Identities=35% Similarity=0.418 Sum_probs=28.7
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
.|.|||+|.-|...|..+++.| .+|.+++..
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G--~kV~viE~~ 35 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFD--KKVMVLDFV 35 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGC--CCEEEECCC
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CeEEEEecc
Confidence 5899999999999999999999 999999854
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| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.89 E-value=6.7 Score=35.02 Aligned_cols=96 Identities=6% Similarity=-0.052 Sum_probs=61.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceE-EeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI-ATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~-a~~~~~ea~~~aDiV 203 (460)
..++|.=||+|-=| ++..+++. | .+|+.++.+++.++..++.-. ...+...+. ...|..+.-...|.|
T Consensus 52 ~g~~VLDiGCG~G~--~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~------~~~l~~~~~~~~~d~~~~~~~fD~i 121 (280)
T d2fk8a1 52 PGMTLLDIGCGWGT--TMRRAVERFD--VNVIGLTLSKNQHARCEQVLA------SIDTNRSRQVLLQGWEDFAEPVDRI 121 (280)
T ss_dssp TTCEEEEESCTTSH--HHHHHHHHHC--CEEEEEESCHHHHHHHHHHHH------TSCCSSCEEEEESCGGGCCCCCSEE
T ss_pred CCCEEEEecCCchH--HHHHHHHhCc--eeEEEecchHHHHHHHHHHHH------hhccccchhhhhhhhhhhccchhhh
Confidence 46899999999765 45556654 6 899999999988765544210 001111222 234565555567888
Q ss_pred EEc-----cchhcHHHHHHHhhhcCCCCCeEEE
Q 012596 204 LHA-----MPVQFSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 204 ila-----Vp~~~~~~vl~~i~~~l~~~~iIV~ 231 (460)
+.. ++......+++.+...|+||..++.
T Consensus 122 ~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i 154 (280)
T d2fk8a1 122 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 154 (280)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred hHhhHHHHhhhhhHHHHHHHHHhccCCCceEEE
Confidence 652 3334567889999999998776543
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| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=80.65 E-value=1.7 Score=38.74 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..||++||. + ++...+.+.| .++++++|++. .| .......++++..||+||++
T Consensus 122 g~kV~vIG~--~--P~v~~l~~~~--~~~~VlE~~p~-------~g--------------d~p~~~~~~lLp~aD~viiT 174 (251)
T d2h1qa1 122 GKKVGVVGH--F--PHLESLLEPI--CDLSILEWSPE-------EG--------------DYPLPASEFILPECDYVYIT 174 (251)
T ss_dssp TSEEEEESC--C--TTHHHHHTTT--SEEEEEESSCC-------TT--------------CEEGGGHHHHGGGCSEEEEE
T ss_pred CCEEEEEec--c--hhHHHHHhcC--CcEEEEeCCCC-------CC--------------CCCchHHHHhhhcCCEEEEE
Confidence 479999986 4 5667777777 89999999862 11 01223456788999999986
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEE
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~ 231 (460)
= ++-+..-++.|..+.++...+|-
T Consensus 175 G-sTlvN~Tl~~LL~~~~~a~~vvl 198 (251)
T d2h1qa1 175 C-ASVVDKTLPRLLELSRNARRITL 198 (251)
T ss_dssp T-HHHHHTCHHHHHHHTTTSSEEEE
T ss_pred e-chhhcCCHHHHHHhCCcCCEEEE
Confidence 3 33344445566666665554443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=80.57 E-value=1.6 Score=35.94 Aligned_cols=101 Identities=7% Similarity=-0.014 Sum_probs=58.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCcc---CCCCCC--CCceE-EeCCH----Hh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY---FPEQKL--PENVI-ATTDA----KT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~---~~~~~l--~~~i~-a~~~~----~e 195 (460)
+..+|..+|+|.= ..+..|++.| ++|+.+|.++..++..++....... ...... ...+. ...+. .+
T Consensus 20 ~~~rvLd~GCG~G--~~a~~la~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 20 PGARVLVPLCGKS--QDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp TTCEEEETTTCCS--HHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCEEEEecCcCC--HHHHHHHHcC--CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 4679999999985 4677889889 9999999999888777664211000 000000 00000 11111 11
Q ss_pred hcCCCcEEEEccc-----hhcHHHHHHHhhhcCCCCCeEE
Q 012596 196 ALLGADYCLHAMP-----VQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 196 a~~~aDiVilaVp-----~~~~~~vl~~i~~~l~~~~iIV 230 (460)
.....|+|+...- ......+++.+...+++|..++
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEE
Confidence 1235677765332 2334567788888899876543
|