Citrus Sinensis ID: 012641
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 459 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C8T9 | 898 | Putative disease resistan | yes | no | 0.980 | 0.501 | 0.336 | 2e-54 | |
| O64790 | 762 | Probable disease resistan | no | no | 0.934 | 0.562 | 0.347 | 6e-52 | |
| O64973 | 889 | Disease resistance protei | no | no | 0.960 | 0.496 | 0.334 | 6e-51 | |
| O64789 | 925 | Probable disease resistan | no | no | 0.947 | 0.470 | 0.343 | 8e-51 | |
| Q42484 | 909 | Disease resistance protei | no | no | 0.947 | 0.478 | 0.328 | 1e-50 | |
| Q9FG91 | 848 | Probable disease resistan | no | no | 0.923 | 0.5 | 0.334 | 5e-50 | |
| Q8RXS5 | 888 | Probable disease resistan | no | no | 0.612 | 0.316 | 0.417 | 1e-49 | |
| Q9SI85 | 893 | Probable disease resistan | no | no | 0.965 | 0.496 | 0.338 | 2e-49 | |
| P60838 | 894 | Probable disease resistan | no | no | 0.925 | 0.475 | 0.334 | 3e-49 | |
| O82484 | 892 | Putative disease resistan | no | no | 0.947 | 0.487 | 0.325 | 5e-49 |
| >sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 164/488 (33%), Positives = 256/488 (52%), Gaps = 38/488 (7%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV L S PEIREL+ VA C GLPLAL + M+ +R WR+AI L
Sbjct: 317 LFQKKVGQITLGSDPEIRELSRVVAKKCCGLPLALNVVSETMSCKRTVQEWRHAIYVLNS 376
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
Y + F GM ++ PLLK+SYD L E K C LYC+LFP I K+ LIE WI E ++
Sbjct: 377 YAAKFSGMDDKILPLLKYSYDSLKGEDVKMCLLYCALFPEDAKIRKENLIEYWICEEIID 436
Query: 121 DSHNIAAAKREGNLILESLKLACLL-EEVEVNNSEDFFKMHDILRDMALWIASSQGA-SK 178
S I A+ +G I+ SL A LL EEVE++ + + +HD++R+MALWIAS G ++
Sbjct: 437 GSEGIDKAENQGYEIIGSLVRASLLMEEVELDGA-NIVCLHDVVREMALWIASDLGKQNE 495
Query: 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFE 238
+ + + ++ + +WN R+SL ++ +I L C L TLL++ T +++
Sbjct: 496 AFIVRASVGLREILKVENWNVVRRMSLMKN-NIAHLDGRLDCM-ELTTLLLQSTHLEKIS 553
Query: 239 NKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIP- 297
++FF SM L VLD S N LS+L G EL+ LQYLNLS+T I LP G+++ K I
Sbjct: 554 SEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHL 613
Query: 298 ----AGMLSSLLSLRVFSWVPT-RYAGFNYGSSVPGVTVLLLEELESLKHLQEISVII-- 350
L S++ + + + +G +Y + V +ELE+L+HL+ ++ I
Sbjct: 614 YLERTSQLGSMVGISCLHNLKVLKLSGSSYAWDLDTV-----KELEALEHLEVLTTTIDD 668
Query: 351 LTLDSLNKLKSSSKLQSCVR-------------RQVMGLPELSS-----LIDISSSSLTT 392
TL + ++ SS +L SC+R + LP I+ +S
Sbjct: 669 CTLGT-DQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHCHTSEIK 727
Query: 393 MMKGHFSQNLQDLSIINC-SIKDLTCILYIPRLRFLFAKDCPSLEEIIAIDLHSEPSEEN 451
M + +L ++++ NC +++LT +++ P L+ L LE+II + + +
Sbjct: 728 MGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEKAHDGEKSG 787
Query: 452 LSMFLHLN 459
+ F LN
Sbjct: 788 IVPFPKLN 795
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 163/469 (34%), Positives = 238/469 (50%), Gaps = 40/469 (8%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV D+ L S P I ELA VA C GLPLAL IG MAS+ W +AI+ L R
Sbjct: 206 LFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGETMASKTMVQEWEHAIDVLTR 265
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
+ F MG ++ P+LK+SYD L E K+CFLYC+LFP I ++LI+ WI EG +
Sbjct: 266 SAAEFSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFPEDDEIYNEKLIDYWICEGFIG 325
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASK-I 179
+ I A+ +G +L +L LA LL +V + MHD++R+MALWIAS G K
Sbjct: 326 EDQVIKRARNKGYEMLGTLTLANLLTKV----GTEHVVMHDVVREMALWIASDFGKQKEN 381
Query: 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPC---CPRLLTLLVRYTMIKE 236
V + + E W R+SL +D+ C C L TL ++ +K
Sbjct: 382 FVVRARVGLHERPEAKDWGAVRRMSL-----MDNHIEEITCESKCSELTTLFLQSNQLKN 436
Query: 237 FENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAI 296
+F + M L VLD S N +KL L+ LQ+L+LSNT+I +LP+G+KK K
Sbjct: 437 LSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKKLKKLT 496
Query: 297 PAGMLSS--LLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354
+ + L S+ S + + GS V G +L+EL+ L++LQ +++ +
Sbjct: 497 FLNLAYTVRLCSISGISRLLSLRLLRLLGSKVHG-DASVLKELQKLQNLQHLAITLSAEL 555
Query: 355 SLNK----LKSSSKLQSCVRRQ-----VMGLPELSSLI--------------DISSSSLT 391
SLN+ L S ++ +++ + + LSSL + +SS L
Sbjct: 556 SLNQRLANLISILGIEGFLQKPFDLSFLASMENLSSLWVKNSYFSEIKCRESETASSYLR 615
Query: 392 TMMKGHFSQNLQDLSIINC-SIKDLTCILYIPRLRFLFAKDCPSLEEII 439
K NL L + C SIKDLT IL+ P L +L+ +D + EII
Sbjct: 616 INPKIPCFTNLSRLGLSKCHSIKDLTWILFAPNLVYLYIEDSREVGEII 664
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Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 238/481 (49%), Gaps = 40/481 (8%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F++KV + L SHP+I LA VA C GLPLAL IG AMA +R W +AI+ L
Sbjct: 321 LFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWCHAIDVLTS 380
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
F GM + +LK+SYD L E K+CFLYCSLFP +I K+ L++ WI EG +
Sbjct: 381 SAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFIN 440
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
+ +G I+ +L ACLL E E N S KMHD++R+MALWI+S G K
Sbjct: 441 EKEGRERNINQGYEIIGTLVRACLLLEEERNKSN--VKMHDVVREMALWISSDLGKQKEK 498
Query: 181 VFQETDKSIK-VQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFEN 239
++ V + WN ++SL + I+ + + C L TL ++ + +
Sbjct: 499 CIVRAGVGLREVPKVKDWNTVRKISLMNN-EIEEIFDSHECAA-LTTLFLQKNDVVKISA 556
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK--KNLKAIP 297
+FF+ M L VLD S+N L++L EL L+Y NLS T I +LP+G+ K L +
Sbjct: 557 EFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLN 616
Query: 298 AGMLSSLLSLRVFS--WVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDS 355
+SSL S+ S W R G + ++ L++EL+ L+HL+ I++ I +
Sbjct: 617 LEHMSSLGSILGISNLW-NLRTLGLRDSRLLLDMS--LVKELQLLEHLEVITLDISSSLV 673
Query: 356 LNKLKSSSKLQSCVRR-----------QVMGLPELSSLIDI----------------SSS 388
L S +L C++ +V+ LP + +L + SSS
Sbjct: 674 AEPLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSS 733
Query: 389 SLTTMMKGHFSQNLQDLSIINC-SIKDLTCILYIPRLRFLFAKDCPSLEEIIAIDLHSEP 447
S NL + I C +KDLT +L+ P L FL +E+II+ + E
Sbjct: 734 SRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEH 793
Query: 448 S 448
S
Sbjct: 794 S 794
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Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 163/475 (34%), Positives = 245/475 (51%), Gaps = 40/475 (8%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV D+ L+S P I LA VA C GLPLAL IG MAS+ W YAI+ L R
Sbjct: 319 LFKNKVGDNTLSSDPVIVGLAREVAQKCRGLPLALNVIGETMASKTMVQEWEYAIDVLTR 378
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
+ F GM ++ P+LK+SYD L E K+CFLYC+LFP I + LI+ I EG +
Sbjct: 379 SAAEFSGMENKILPILKYSYDSLGDEHIKSCFLYCALFPEDGQIYTETLIDKLICEGFIG 438
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFK-------MHDILRDMALWIASS 173
+ I A+ +G +L +L A LL +V + K MHD++R+MALWIAS
Sbjct: 439 EDQVIKRARNKGYAMLGTLTRANLLTKVGTELANLLTKVSIYHCVMHDVVREMALWIASD 498
Query: 174 QGASK-ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYT 232
G K V Q + ++ E W R+SL R+ I+ ++ C L TL ++
Sbjct: 499 FGKQKENFVVQASAGLHEIPEVKDWGAVRRMSLMRN-EIEEITCESK-CSELTTLFLQSN 556
Query: 233 MIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK-- 290
+K +F + M L VLD S N ++L L+ LQYL+LS T I +LP+G+K
Sbjct: 557 QLKNLSGEFIRYMQKLVVLDLSDNRDFNELPEQISGLVSLQYLDLSFTRIEQLPVGLKEL 616
Query: 291 KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI- 349
K L + + L S+ S + + GS V G +L+EL+ L++LQ++++
Sbjct: 617 KKLTFLDLAYTARLCSISGISRLLSLRVLSLLGSKVHG-DASVLKELQQLENLQDLAITL 675
Query: 350 ---ILTLDS-LNKLKSSSKLQSCVRRQVMGLPELSSLIDISS----SSLTTMMKGHFSQ- 400
+++LD L K+ S ++ +++ L L+S+ ++SS +S + +K S+
Sbjct: 676 SAELISLDQRLAKVISILGIEGFLQKP-FDLSFLASMENLSSLWVKNSYFSEIKCRESET 734
Query: 401 ---------------NLQDLSIINC-SIKDLTCILYIPRLRFLFAKDCPSLEEII 439
NL L I+ C S+KDLT IL+ P L LF +D + EII
Sbjct: 735 DSSYLHINPKIPCFTNLSRLDIVKCHSMKDLTWILFAPNLVVLFIEDSREVGEII 789
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 168/512 (32%), Positives = 257/512 (50%), Gaps = 77/512 (15%)
Query: 9 DVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGM 68
D+L S IR LAE + CGGLPLAL+T+G AMA R + W +A E L R+P+ +GM
Sbjct: 327 DLLES-SSIRRLAEIIVSKCGGLPLALITLGGAMAHRETEEEWIHASEVLTRFPAEMKGM 385
Query: 69 GTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAA 128
VF LLKFSYD L S+ ++CFLYC+LFP I ++L+E W+GEG L SH +
Sbjct: 386 NY-VFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTI 444
Query: 129 KREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKILVFQETDKS 188
+ G ++ LK ACLLE + + KMH+++R ALW+AS QG K L+ E
Sbjct: 445 YK-GYFLIGDLKAACLLE---TGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMG 500
Query: 189 -IKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRY-TMIKEFENKFFQSMH 246
+ + +W +A+ +SL + I +L P CP+L TL+++ + +K+ FF M
Sbjct: 501 HTEAPKAENWRQALVISLLDN-RIQTL-PEKLICPKLTTLMLQQNSSLKKIPTGFFMHMP 558
Query: 247 ALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELP--IGIKKNLK---------- 294
LRVLD S + ++++ + L++L +L++S T I LP +G + LK
Sbjct: 559 VLRVLDLSFTS-ITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFL 617
Query: 295 -AIPAGMLSSLLSLRVFSWVPTRYAGFNYGS--------------------SVPGVTVLL 333
IP + L L V + + YAG+ S + G+TVL
Sbjct: 618 QTIPRDAICWLSKLEVLN-LYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLS 676
Query: 334 LEELESL-------KHLQEISV------IILTLDSLNK---------LKSSSKLQSCVRR 371
LE L++L KH+Q + V + L SL +KS L+ V
Sbjct: 677 LETLKTLFEFGALHKHIQHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTP 736
Query: 372 QVM---GLPELSSLIDISSSSLTTMMKGHFSQN-LQDLSIINCS----IKDLTCILYIPR 423
LP L L S +LT + SQ+ L+++ IN S +K+++ + +P+
Sbjct: 737 ADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNVSWVQKLPK 796
Query: 424 LRFLFAKDCPSLEEIIAIDLHSEPSEENLSMF 455
L + DC +EE+I+ H PS E+ ++F
Sbjct: 797 LEVIELFDCREIEELIS--EHESPSVEDPTLF 826
|
Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (505), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 235/479 (49%), Gaps = 55/479 (11%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+FRL V D +L SH +I LA VA C GLPLAL IG AM + WR+AI L
Sbjct: 316 LFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKAMVCKETVQEWRHAINVLNS 375
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
F GM R+ P+LKFSYD L + K CFLYCSLFP I KD+LIE WI EG +
Sbjct: 376 PGHKFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPEDFEIEKDKLIEYWICEGYIN 435
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
+ +G I+ L A LL E E+ D KMHD++R+MALWI S G +
Sbjct: 436 PNRYEDGGTNQGYDIIGLLVRAHLLIECELT---DKVKMHDVIREMALWINSDFGNQQET 492
Query: 181 VFQETDKSIK-VQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFEN 239
+ ++ ++ + SW E VR S ++ ++ +P CP L TLL+ Y + +
Sbjct: 493 ICVKSGAHVRLIPNDISW-EIVRQMSLISTQVEKIACSPN-CPNLSTLLLPYNKLVDISV 550
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIP-- 297
FF M L VLD S N L +L L LQYLNLS T I LP+G+KK K I
Sbjct: 551 GFFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQYLNLSLTGIKSLPVGLKKLRKLIYLN 610
Query: 298 ----------AGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347
G+ ++L +L+V + + V +++EEL+ LKHL+ ++
Sbjct: 611 LEFTNVLESLVGIATTLPNLQVLKLFYSLFC----------VDDIIMEELQRLKHLKILT 660
Query: 348 VIILTLDSLNKLKSSSKLQSCVR----------RQVM------GLPELS----SLIDISS 387
I L +++ +L S +R R ++ GL +L ++ +I
Sbjct: 661 ATIEDAMILERVQGVDRLASSIRGLCLRNMSAPRVILNSVALGGLQQLGIVSCNISEIEI 720
Query: 388 SSLTTMMKGHFS------QNLQDLSIIN-CSIKDLTCILYIPRLRFLFAKDCPSLEEII 439
L+ + H S + L +++I +DL+ +L+ L+ + + P++EEII
Sbjct: 721 DWLSKERRDHRSTSSPGFKQLASITVIGLVGPRDLSWLLFAQNLKDIQVQYSPTIEEII 779
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 162/290 (55%), Gaps = 9/290 (3%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F KV + L SHPEI +A TVA C GLPLAL IG MA +R WR AI+ L
Sbjct: 319 LFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTS 378
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
+ F GM + P+LK+SYD L SE K CF YC+LFP I K++L++ WIGEG +
Sbjct: 379 SAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFI- 437
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASK-I 179
N A+ +G I+ L +CLL E +++ KMHD++R+MALWIAS G K
Sbjct: 438 -DRNKGKAENQGYEIIGILVRSCLLME----ENQETVKMHDVVREMALWIASDFGKQKEN 492
Query: 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFEN 239
+ Q +S + E W A RVSL + +I+S+ P P+L+TLL+R + +
Sbjct: 493 FIVQAGLQSRNIPEIEKWKVARRVSLMFN-NIESIRDAPE-SPQLITLLLRKNFLGHISS 550
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGI 289
FF+ M L VLD S N L L E + LQYL+LS T I P G+
Sbjct: 551 SFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGL 600
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 169/499 (33%), Positives = 243/499 (48%), Gaps = 56/499 (11%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV L S P I +LA VA C GLPLAL IG M+ +R WR AI L
Sbjct: 317 LFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNS 376
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
Y + F GM ++ PLLK+SYD L E K+ LYC+L+P I K++LIE WI E ++
Sbjct: 377 YAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPEDAKIRKEDLIEHWICEEIID 436
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
S I A+ +G I+ SL A LL E + MHD++R+MALWIAS G K
Sbjct: 437 GSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVIMHDVVREMALWIASELGIQKEA 496
Query: 181 VFQETDKSIK-VQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLV---------R 230
++ + + +WN R+SL I L + C L TLL+ R
Sbjct: 497 FIVRAGVGVREIPKVKNWNVVRRMSL-MGNKIHHLVGSYECM-ELTTLLLGEGEYGSIWR 554
Query: 231 YTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK 290
++ IK ++FF M L VLD S N L +L L+ L+YLNLS+T I L GI+
Sbjct: 555 WSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQ 614
Query: 291 KNLKAIPAGM-----------LSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 339
+ K I + +SSL +L+V YGS +P + ++ELE+
Sbjct: 615 ELKKIIHLNLEHTSKLESIDGISSLHNLKVLKL---------YGSRLPW-DLNTVKELET 664
Query: 340 LKHLQEISVIILTLDSLNK-LKSSSKLQSCVR-RQVMG---------LPELSSLID---- 384
L+HL+ ++ T+D K SS +L S R Q+ G L LS D
Sbjct: 665 LEHLE---ILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQLESLSVSTDKLRE 721
Query: 385 --ISSSSLTTMMKGHFSQ--NLQDLSIINC-SIKDLTCILYIPRLRFLFAKDCPSLEEII 439
I S++ + G +L D++I NC +++LT +++ P+LR L D LE+II
Sbjct: 722 FEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDII 781
Query: 440 AIDLHSEPSEENLSMFLHL 458
+ E + + F L
Sbjct: 782 NEEKACEGEDSGIVPFPEL 800
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 238/479 (49%), Gaps = 54/479 (11%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F++KV ++ L HP+I ELA VA C GLPLAL IG MA +R WR AI+ L
Sbjct: 321 LFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGETMACKRMVQEWRNAIDVLSS 380
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
Y + F GM ++ P+LK+SYD L E K CFLYCSLFP + K+ LI+ WI EG +
Sbjct: 381 YAAEFPGM-EQILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEGFID 439
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
++ + A +G I+ L ACLL E +N + KMHD++R+MALWIAS G K
Sbjct: 440 ENESRERALSQGYEIIGILVRACLLLEEAINKEQ--VKMHDVVREMALWIASDLGEHKER 497
Query: 181 VFQETDKSIK-VQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFEN 239
+ ++ V + +W+ R+SL + I+ LS +P C L + + +
Sbjct: 498 CIVQVGVGLREVPKVKNWSSVRRMSLMEN-EIEILSGSPECLELTTLFLQKNDSLLHISD 556
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK--------- 290
+FF+ + L VLD S N+ L KL +L+ L+YL+LS T I LP+G++
Sbjct: 557 EFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLR 616
Query: 291 ----KNLKAIPA----------GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE 336
K LK+I +L S +SL + + ++ + L++E+
Sbjct: 617 LDYMKRLKSISGISNISSLRKLQLLQSKMSLDMSLVEELQLLEHLEVLNISIKSSLVVEK 676
Query: 337 LES------------LKHLQEISVIILTL---DSLNKLKSSSKLQSCVRRQVMGLPELSS 381
L + L+ +QE S +LTL D+LNK+ ++ C G+ E+
Sbjct: 677 LLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNLNKV----IIRKC------GMCEIKI 726
Query: 382 LIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKDLTCILYIPRLRFLFAKDCPSLEEII 439
S S K F NL + I +C +KDLT +L+ P L L D +E II
Sbjct: 727 ERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGII 785
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 225/470 (47%), Gaps = 35/470 (7%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV L SHP+I ELA+ VA C GLPLAL IG MA +R W +A++ L
Sbjct: 318 LFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGETMAGKRAVQEWHHAVDVLTS 377
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
Y + F GM + +LK+SYD L + ++CF YC+L+P I K LI+ WI EG +
Sbjct: 378 YAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDYSIKKYRLIDYWICEGFID 437
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASK-I 179
+ A +G IL +L ACLL E N E KMHD++R+MALW S G +K
Sbjct: 438 GNIGKERAVNQGYEILGTLVRACLLSEEGKNKLE--VKMHDVVREMALWTLSDLGKNKER 495
Query: 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTM-IKEFE 238
+ Q KV + W R+SL + I+ +S +P CP L TL ++ +
Sbjct: 496 CIVQAGSGLRKVPKVEDWGAVRRLSLMNN-GIEEISGSPE-CPELTTLFLQENKSLVHIS 553
Query: 239 NKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELP------------ 286
+FF+ M L VLD S+N +L L EL+ L+YL+LS+TNI LP
Sbjct: 554 GEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHL 613
Query: 287 -----------IGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE 335
GI K G+ +S + L V S ++ V+ ++LE
Sbjct: 614 NLECMRRLGSIAGISKLSSLRTLGLRNSNIMLDVMSVKELHLLEHLEILTIDIVSTMVLE 673
Query: 336 ELES----LKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLT 391
++ + +QE+S+ L D K +R M E+S I+I +
Sbjct: 674 QMIDAGTLMNCMQEVSIRCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISE-IEIERLTWN 732
Query: 392 TMMKGHFSQNLQDLSIINC-SIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440
T NL + I C S+KDLT +L+ P + +L + L+E+I+
Sbjct: 733 TNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELIS 782
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 459 | ||||||
| 225465083 | 920 | PREDICTED: probable disease resistance p | 0.965 | 0.481 | 0.406 | 5e-82 | |
| 147838868 | 882 | hypothetical protein VITISV_011431 [Viti | 0.978 | 0.509 | 0.398 | 1e-81 | |
| 225442539 | 882 | PREDICTED: probable disease resistance p | 0.978 | 0.509 | 0.398 | 2e-81 | |
| 147859094 | 881 | hypothetical protein VITISV_018933 [Viti | 0.938 | 0.489 | 0.405 | 8e-79 | |
| 359482559 | 883 | PREDICTED: disease resistance protein RP | 0.976 | 0.507 | 0.394 | 1e-78 | |
| 297743316 | 855 | unnamed protein product [Vitis vinifera] | 0.915 | 0.491 | 0.415 | 7e-78 | |
| 359482561 | 1639 | PREDICTED: probable disease resistance p | 0.967 | 0.270 | 0.387 | 5e-77 | |
| 147782477 | 1377 | hypothetical protein VITISV_002420 [Viti | 0.976 | 0.325 | 0.386 | 7e-77 | |
| 297743385 | 727 | unnamed protein product [Vitis vinifera] | 0.984 | 0.621 | 0.385 | 3e-76 | |
| 225442703 | 916 | PREDICTED: disease resistance protein RP | 0.967 | 0.484 | 0.392 | 4e-75 |
| >gi|225465083|ref|XP_002266249.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 201/495 (40%), Positives = 275/495 (55%), Gaps = 52/495 (10%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F KV +D LNSHP+I +L+E V C GLPLAL+ IG AMA R P++W I+ L+
Sbjct: 316 LFWAKVGEDALNSHPDIPKLSEIVVGECKGLPLALIIIGRAMAGARTPEDWEKKIKMLKN 375
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
YP+ F GMG +FP+L FSYD L E K+CFLYCSLFP I LIELW+GEG L
Sbjct: 376 YPAKFPGMGDSLFPVLAFSYDSLPDEAVKSCFLYCSLFPEDYEISPQHLIELWLGEGFLD 435
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASK-I 179
+ I A+ +G I+E LK CLLE + +++ KMHD++RDMALW+AS G K
Sbjct: 436 EYDGIREARNQGEEIIERLKDVCLLENGR-SQKQEYLKMHDVIRDMALWLASENGKKKNK 494
Query: 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFEN 239
V ++ I+ E WNE R+SLW S I+ L PPC P + T IK F +
Sbjct: 495 FVVKDQVGLIRAHEVEKWNETQRISLWES-RIEELR-EPPCFPNIETFSASGKCIKSFPS 552
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK--KNLK--- 294
FF M +RVLD S N +L +L V G L++LQYLNLS T+I +P+ +K KNLK
Sbjct: 553 GFFAYMPIIRVLDLSNNYELIELPVEIGNLVNLQYLNLSRTSIENIPVELKNLKNLKYLI 612
Query: 295 --------AIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEI 346
+P+ MLS L SL++FS + Y G + LLE+LE L+++ +I
Sbjct: 613 LDNMNSLQPLPSQMLSVLSSLQLFSMFNSPYKGDHRT---------LLEDLEQLEYINDI 663
Query: 347 SVIILTLDSLNKLKSSSKLQSCVRR------QVMGLPELSSLIDISSSSLTTMMK----- 395
S+ + T+ S L +S KLQS RR + + L +LS I++ S K
Sbjct: 664 SIDLTTVFSAQALFNSHKLQSSTRRLRLFNCKNLNLVQLSPYIEMLHISFCHAFKDVQIS 723
Query: 396 -------------GHFSQNLQDLSIINCS-IKDLTCILYIPRLRFLFAKDCPSLEEIIAI 441
GH +L ++I CS + +LT ++Y P L+FL DC SLEE++ I
Sbjct: 724 LEKEVLHSKFPRHGHCLYHLCHVNISWCSKLLNLTWLIYAPNLKFLSIDDCGSLEEVVEI 783
Query: 442 DLHSEPSEENLSMFL 456
+ SE SE L+ L
Sbjct: 784 E-KSEVSELELNFDL 797
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838868|emb|CAN70333.1| hypothetical protein VITISV_011431 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 199/499 (39%), Positives = 277/499 (55%), Gaps = 50/499 (10%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+FR KV +++LNSHP+I+ LA+ V + C GLPLAL+ IG AMASR+ P W AI+ L+
Sbjct: 314 LFRDKVGENILNSHPDIKRLAKIVVEECKGLPLALIVIGRAMASRKTPQEWEQAIQVLKS 373
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
YP+ F GMG +VFP+LKFSYD L ++T K+CFLYCSLFP I ++LI+LWIGEG +
Sbjct: 374 YPAKFSGMGDQVFPILKFSYDHLDNDTTKSCFLYCSLFPEDHKIWIEDLIDLWIGEGFMD 433
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
+I A+ +G I+ SLKLACLLE SE KMHD++RDMALW++ G K
Sbjct: 434 KFVDIYEARNQGEEIIRSLKLACLLEG---GVSEHTCKMHDVIRDMALWLSCDYGEEKHK 490
Query: 181 VFQ-ETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFEN 239
F + + I+ ET W EA R+SLW S + LS + PC L TL++R + +K
Sbjct: 491 SFVLDHGQLIEAYETVKWKEAQRISLWYSNINEGLSLS-PCFLNLRTLILRNSNMKSLPI 549
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKK-------- 291
FFQ M +RVLD S NA L +L + L L++LNL+ T I ++PI +K
Sbjct: 550 GFFQFMPVIRVLDLSYNANLVELPLEICRLESLEFLNLARTGIKKMPIELKNLTKLRCLI 609
Query: 292 -----NLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGV-TVLLLEELESLKHLQE 345
L+ IP ++S L +L++F R N + V L+ELE L++L
Sbjct: 610 LDNIWKLEVIPPNVISCLSNLQMF-----RMQLLNIEKDIKEYEEVGELQELECLQYLSW 664
Query: 346 ISVIILTLDSLNKLKSSSKLQSCVRRQVMG---------LP----------ELSSLIDIS 386
IS+ J T+ ++ K +S LQ CVR MG LP E D+
Sbjct: 665 ISITJRTIPAVQKYLTSLMLQKCVRHLAMGNCPGLQVVELPLSTLQRLTVLEFQGCYDLE 724
Query: 387 SSSLTT-MMKGHFS----QNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAI 441
+ + +GH S NL + I C DLT ++Y P L L +D P++EEII
Sbjct: 725 RVKINMGLSRGHISNSNFHNLVKVFINGCQFLDLTWLIYAPSLELLCVEDNPAMEEIIGS 784
Query: 442 DL--HSEPSEENLSMFLHL 458
D SE ++NLS+F L
Sbjct: 785 DECGDSEIDQQNLSIFSRL 803
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442539|ref|XP_002278938.1| PREDICTED: probable disease resistance protein At5g63020 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 199/499 (39%), Positives = 277/499 (55%), Gaps = 50/499 (10%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+FR KV +++LNSHP+I+ LA+ V + C GLPLAL+ IG AMASR+ P W AI+ L+
Sbjct: 314 LFRDKVGENILNSHPDIKRLAKIVVEECKGLPLALIVIGRAMASRKTPQEWEQAIQVLKS 373
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
YP+ F GMG +VFP+LKFSYD L ++T K+CFLYCSLFP I ++LI+LWIGEG +
Sbjct: 374 YPAKFSGMGDQVFPILKFSYDHLDNDTTKSCFLYCSLFPEDHKIWIEDLIDLWIGEGFMD 433
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
+I A+ +G I+ SLKLACLLE SE KMHD++RDMALW++ G K
Sbjct: 434 KFVDIYEARNQGEEIIRSLKLACLLEG---GVSEHTCKMHDVIRDMALWLSCDYGEEKHK 490
Query: 181 VFQ-ETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFEN 239
F + + I+ ET W EA R+SLW S + LS + PC L TL++R + +K
Sbjct: 491 SFVLDHGQLIEAYETVKWKEAQRISLWYSNINEGLSLS-PCFLNLRTLILRNSNMKSLPI 549
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKK-------- 291
FFQ M +RVLD S NA L +L + L L++LNL+ T I ++PI +K
Sbjct: 550 GFFQFMPVIRVLDLSYNANLVELPLEICRLESLEFLNLARTGIKKMPIELKNLTKLRCLI 609
Query: 292 -----NLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGV-TVLLLEELESLKHLQE 345
L+ IP ++S L +L++F R N + V L+ELE L++L
Sbjct: 610 LDNIWKLEVIPPNVISCLSNLQMF-----RMQLLNIEKDIKEYEEVGELQELECLQYLSW 664
Query: 346 ISVIILTLDSLNKLKSSSKLQSCVRRQVMG---------LP----------ELSSLIDIS 386
IS+ + T+ ++ K +S LQ CVR MG LP E D+
Sbjct: 665 ISITLRTIPAVQKYLTSLMLQKCVRHLAMGNCPGLQVVELPLSTLQRLTVLEFQGCYDLE 724
Query: 387 SSSLTT-MMKGHFS----QNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAI 441
+ + +GH S NL + I C DLT ++Y P L L +D P++EEII
Sbjct: 725 RVKINMGLSRGHISNSNFHNLVKVFINGCQFLDLTWLIYAPSLELLCVEDNPAMEEIIGS 784
Query: 442 DL--HSEPSEENLSMFLHL 458
D SE ++NLS+F L
Sbjct: 785 DECGDSEIDQQNLSIFSRL 803
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147859094|emb|CAN80410.1| hypothetical protein VITISV_018933 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 268/479 (55%), Gaps = 48/479 (10%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+FR KV +++LNSHPEI+ LA+ V + C GLPLAL+ IG +MASR+ P W AI+ L+
Sbjct: 350 LFRYKVGENILNSHPEIKRLAKIVVEECKGLPLALIVIGRSMASRKTPREWEQAIQVLKS 409
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
YP+ F GMG +VFP+LKF+YD L ++T K+CFLYCS FP I+ + LI+LWIGEG L
Sbjct: 410 YPAEFSGMGDQVFPILKFNYDHLDNDTIKSCFLYCSTFPEDHEILNESLIDLWIGEGFLN 469
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGAS--K 178
+I A +G+ I+ SLKLACLLE + SED KMHD++RDMALW++ G K
Sbjct: 470 KFDDIHKAHNQGDEIIRSLKLACLLEG---DVSEDTCKMHDVIRDMALWLSCDYGKKRHK 526
Query: 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFE 238
I V + I+ E W E R+SLW S LS + PC P L TL++ + +K
Sbjct: 527 IFVLDHV-QLIEAYEIVKWKETQRISLWDSNINKGLSLS-PCFPNLQTLILINSNMKSLP 584
Query: 239 NKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK-------- 290
FFQSM A+RVLD S+N +L +L + L L+YLNL+ T+I +PI +K
Sbjct: 585 IGFFQSMSAIRVLDLSRNEELVELPLEICRLESLEYLNLTWTSIKRMPIELKNLTKLRCL 644
Query: 291 -----KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQE 345
K L+ IP+ ++S L +L++F V V V +L+ELE L++L
Sbjct: 645 ILDRVKWLEVIPSNVISCLPNLQMFRMVHRISLDI-----VEYDEVGVLQELECLQYLSW 699
Query: 346 ISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFS----QN 401
IS+ +LT + K +S LQ +R M GH S N
Sbjct: 700 ISISLLTAPVVKKYITSLMLQKRIRELNM-----------------RTCPGHISNSNFHN 742
Query: 402 LQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAIDL--HSEPSEENLSMFLHL 458
L ++I C DLT ++Y P L FL + +EEII D SE ++NLS+F L
Sbjct: 743 LVRVNISGCRFLDLTWLIYAPSLEFLLVRTSHDMEEIIGSDECGDSEIDQQNLSIFSRL 801
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482559|ref|XP_002277748.2| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 197/499 (39%), Positives = 278/499 (55%), Gaps = 51/499 (10%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+FR KV +++LNSHPEI+ LA+ V + C GLPLAL+ IG +MASR+ P W AI+ L+
Sbjct: 315 LFRDKVGENILNSHPEIKRLAKIVIEECKGLPLALIVIGRSMASRKTPREWEQAIQVLKS 374
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
YP+ F GMG +VFP+LKFSYD L ++T K+CFLYCS FP I+ + LI+LWIGEG L
Sbjct: 375 YPAEFSGMGDQVFPILKFSYDHLDNDTIKSCFLYCSTFPEDHEILNEGLIDLWIGEGFLN 434
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGAS--K 178
+I A +G+ I+ SLKLACLLE + SED KMHD++RDMALW++ G K
Sbjct: 435 KFDDIHKAHNQGDEIIRSLKLACLLEG---DVSEDTCKMHDVIRDMALWLSCDYGKKRHK 491
Query: 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFE 238
I V + I+ E W EA R+SLW S +I+ PC P L TL++ + +K
Sbjct: 492 IFVLDHV-QLIEAYEIVKWKEAQRISLWDS-NINKGFSLSPCFPNLQTLILINSNMKSLP 549
Query: 239 NKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK-------- 290
FFQSM A+RVLD S+N +L +L + L L+YLNL+ T+I +PI +K
Sbjct: 550 IGFFQSMPAIRVLDLSRNEELVELPLEICRLESLEYLNLTWTSIKRMPIELKNLTKLRCL 609
Query: 291 -----KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQE 345
K L+ IP+ ++S L +L++F V V V +L+ELE L++L
Sbjct: 610 ILDRVKWLEVIPSNVISCLPNLQMFKMVHRISLDI-----VEYDEVGVLQELECLQYLSW 664
Query: 346 ISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMM----------- 394
IS+ +LT + K +S LQ +R M ++++ S+L T+
Sbjct: 665 ISISLLTAPVVKKYLTSLILQKRIRELNMRTCPGLKVVELPLSTLQTLTMLGFDHCNDLE 724
Query: 395 ---------KGHFS----QNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAI 441
+GH S NL ++I C DLT ++Y L FL + +EEII
Sbjct: 725 RVKINMGLSRGHISNSNFHNLVRVNISGCRFLDLTWLIYASSLEFLLVRTSRDMEEIIGS 784
Query: 442 DL--HSEPSEENLSMFLHL 458
D SE ++NLS+F L
Sbjct: 785 DECGDSEIDQQNLSIFSRL 803
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743316|emb|CBI36183.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 198/477 (41%), Positives = 272/477 (57%), Gaps = 57/477 (11%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+FR +V +++LNSHP+I LA+ VA+ C GLPLALVT+G AMA+ +DP NW I++L++
Sbjct: 315 LFRKEVGEEILNSHPDIPMLAKVVAEECRGLPLALVTLGRAMAAEKDPSNWDKVIQDLRK 374
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
P+ GM ++F LK SYDRL K+CF+Y S+F I +LIELWIGEG L
Sbjct: 375 SPAEITGMEDKLFHRLKLSYDRLPDNASKSCFIYHSIFREDWEIYNYQLIELWIGEGFLG 434
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGA--SK 178
+ H+I A+ +G I+ +LK ACLLE + E K+HD++RDMALW+ G +K
Sbjct: 435 EVHDIHEARDQGKKIINTLKHACLLE--SCGSKEYRVKIHDVIRDMALWLYGEHGVKKNK 492
Query: 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSID-SLSPTPPCCPRLLTLLVRYTM-IKE 236
ILV+ + + + QET+ E ++SLW +D P CP L TL V+ +K+
Sbjct: 493 ILVYNKVARLDEDQETSKLRETEKISLW---DMDVGKFPETLVCPNLKTLFVKKCHNLKK 549
Query: 237 FENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK------ 290
F N FFQ M LRVLD S N LS+L G G+L L+YLNLS T I ELPI +K
Sbjct: 550 FPNGFFQFMLLLRVLDLSDNDNLSELPTGIGKLGALRYLNLSYTRIRELPIELKNLKNLM 609
Query: 291 -------KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVP-GVTVLLLEELESLKH 342
K+L+ IP M+SSL+SL++FS Y S++ GV +LEELESL
Sbjct: 610 ILIMDGMKSLEIIPQDMISSLISLKLFSI---------YESNITSGVEETVLEELESLND 660
Query: 343 LQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNL 402
+ EIS+II S NKLKSS KLQ C+ R+ + L
Sbjct: 661 ISEISIIICNALSFNKLKSSHKLQRCISRE------------------------EYFHTL 696
Query: 403 QDLSIINCS-IKDLTCILYIPRLRFLFAKDCPSLEEIIAIDLHSEPSEENLSMFLHL 458
+ II+CS + DLT ++Y P L L+ +DC S+EE+I D +E L +F L
Sbjct: 697 HRVVIIHCSKLLDLTWLVYAPYLEGLYVEDCESIEEVIRDDSEVCEIKEKLDIFSRL 753
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482561|ref|XP_002277853.2| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 194/501 (38%), Positives = 282/501 (56%), Gaps = 57/501 (11%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F KV +++LNSHP+I+ LA+ V + C GLPLALV IG +MASR+ P W A++ L+
Sbjct: 318 LFCDKVGENILNSHPDIKRLAKIVVEECEGLPLALVVIGRSMASRKTPREWEQALQVLKS 377
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
YP+ F GMG VFP+LKFSYD L + T K+CFLYCS+FP II +ELI+LWIGEG +
Sbjct: 378 YPAEFSGMGDHVFPILKFSYDHLDNHTIKSCFLYCSIFPEDSIIENEELIDLWIGEGFVN 437
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
++ A+ +G+ I+ SLKLACLLE + SE KMHD++RDMALW++ G K
Sbjct: 438 KFADVHKARNQGDGIIRSLKLACLLEG---DVSESTCKMHDVIRDMALWLSCESGEEKHK 494
Query: 181 VFQ-ETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFEN 239
F + + I+ E W EA R+SLW S + LS +P L TL++R + +K
Sbjct: 495 SFVLKHVELIEAYEIVKWKEAQRISLWHSNINEGLSLSPRFL-NLQTLILRNSNMKSLPI 553
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAG 299
FFQSM +RVLD S N L +L + L L+YLNL+ T+I +PI + KNL +
Sbjct: 554 GFFQSMPVIRVLDLSDNRNLVELPLEICRLESLEYLNLTGTSIKRMPIEL-KNLTKLRCL 612
Query: 300 MLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVL---------------LLEELESLKHLQ 344
ML +++L V +P+ N S +P + + +L+ELE L++L
Sbjct: 613 MLDHVVALEV---IPS-----NVISCLPNLQMFRMLHALDIVEYDEVGVLQELECLEYLS 664
Query: 345 EISVIILTLDSLNKLKSSSKLQSCVRRQ-VMGLPELSSLIDISSSSLTTMM--------- 394
IS+ +LT+ ++ +S LQ CVR +M P L ++++ S+L T+
Sbjct: 665 WISITLLTVPAVQIYLTSLMLQKCVRDLCLMTCPGL-KVVELPLSTLQTLTVLRFEYCND 723
Query: 395 -----------KGHFS----QNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEII 439
+GH S NL + I+ C +LT ++Y P L FL + +EEII
Sbjct: 724 LERVKINMGLSRGHISNSNFHNLVKVFIMGCRFLNLTWLIYAPSLEFLSVRASWEMEEII 783
Query: 440 AIDLH--SEPSEENLSMFLHL 458
D + SE ++NLS+F L
Sbjct: 784 GSDEYGDSEIDQQNLSIFSRL 804
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147782477|emb|CAN75117.1| hypothetical protein VITISV_002420 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 193/499 (38%), Positives = 279/499 (55%), Gaps = 51/499 (10%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F KV +++LNSHP+I+ LA+ V + C GLPLAL+ IG +MAS + P W A++ L+
Sbjct: 317 LFCDKVGENILNSHPDIKRLAKIVVEECKGLPLALIVIGRSMASMKTPREWEQALQMLKS 376
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
YP+ F GMG VFP+LKFSYD L + K+CFLYCSLFP I +ELI+LWIGEG L
Sbjct: 377 YPAEFSGMGDHVFPILKFSYDHLYNPIIKSCFLYCSLFPEDHEIWNEELIDLWIGEGFLN 436
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
+I A+ +G+ I+ SLKLACLLE + SE KMHD++RDMALW++ G
Sbjct: 437 KFADIHKARNQGDEIIRSLKLACLLEG---DVSEYTCKMHDVIRDMALWLSCESGEENHK 493
Query: 181 VFQ-ETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFEN 239
F E + I+ E W EA R+SLW S + LS +P L TL++R + +K
Sbjct: 494 SFVLEHVELIEAYEIVKWKEAQRISLWHSNINEGLSLSPRFL-NLQTLILRDSKMKSLPI 552
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK--------- 290
FFQSM +RVLD S N L +L + L L+YLNL TNI +PI +K
Sbjct: 553 GFFQSMPVIRVLDLSYNGNLVELPLEICRLESLEYLNLIRTNIKRMPIELKNLTKLRCLM 612
Query: 291 ----KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEI 346
+ L+ IP+ ++S LL+L++F + ++ +V GV L+E+E L++L I
Sbjct: 613 LDYVEGLEVIPSNVISCLLNLQMFRMMHRFFSDIMEYDAV-GV----LQEMECLEYLSWI 667
Query: 347 SVIILTLDSLNKLKSSSKLQSCVRR-QVMGLPELSSLIDISSSSLTTMM----------- 394
S+ + T+ ++ K +S LQ +R +M P L ++++ S+L T+
Sbjct: 668 SISLFTVPAVQKYLTSLMLQKRIRELNLMACPGL-KVVELPLSTLQTLTVLGFDRCDDLE 726
Query: 395 ---------KGHFS----QNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAI 441
+GH S NL + I+ C DLT ++Y P L L +D +EEII
Sbjct: 727 RVKINMGLSRGHISNSNFHNLVKVFILGCRFLDLTWLIYAPSLELLAVRDSWEMEEIIGS 786
Query: 442 DLH--SEPSEENLSMFLHL 458
D + SE ++NLS+F L
Sbjct: 787 DEYGDSEIDQQNLSIFSRL 805
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743385|emb|CBI36252.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 198/514 (38%), Positives = 282/514 (54%), Gaps = 62/514 (12%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F +V +D LNSH +I +LA+ VA+ C GLPLAL+TIG AMAS P W AI+EL++
Sbjct: 138 LFLKEVGEDTLNSHSDILKLAKVVAEECKGLPLALITIGRAMASMNGPLAWEQAIQELRK 197
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
+P+ GM +F LKFSYD L E K+CF+YCS+FP I D LIELWIGEG L
Sbjct: 198 FPAEIIGMEDDLFYRLKFSYDSLCDEVLKSCFIYCSMFPEDYEIENDALIELWIGEGFLD 257
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGA--SK 178
+ +I A+ G+ ++ +LK ACLLE E SE KMHD++RDMALW+A GA K
Sbjct: 258 EFEDIYEARDRGHKVIGNLKHACLLESGE---SEKRVKMHDVIRDMALWLACECGAEKKK 314
Query: 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTM-IKEF 237
LV Q S +VQ A W EA R+SLW S S + + P P C P LLTL +R + +K F
Sbjct: 315 FLVCQGAG-SFEVQGVAKWKEAQRMSLWDS-SFEEVMPKPLCFPNLLTLFLRNCVGLKAF 372
Query: 238 ENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIP 297
+ FFQ + +RVLD S +L++L G +L+ LQYLNLS TNI ELPI + KNLK +
Sbjct: 373 PSGFFQFIPIVRVLDLSGTHQLTELSGGIDKLVTLQYLNLSRTNISELPIEM-KNLKELR 431
Query: 298 AGMLSSLLSLRVFSW----------VPTRYAGFNYGSSVPGVTVLLLEEL-----ESLKH 342
++ + SL + W + + Y + + + G + +++ ESL+H
Sbjct: 432 CLLMDVMYSLSIIPWQVISSFSSLQLLSMYKAYRFSVVMEGNVLSYGDKVLLEELESLEH 491
Query: 343 LQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTM--------- 393
L ++S+ + T S LKSS KLQ C+RR + E + ++SSSS+ M
Sbjct: 492 LNDLSISLFTALSFYILKSSHKLQRCIRRLCLDDCEDLTCFELSSSSIKRMAHLEKLEIW 551
Query: 394 ---------------------------MKGHFSQNLQDLSIINC-SIKDLTCILYIPRLR 425
G+F + L + I+ C + DL ++Y P L+
Sbjct: 552 TCCQLEDMKINKEERHGFIPDDILDLKFNGYFPK-LHHVIIVRCPRLLDLKWLIYAPSLQ 610
Query: 426 FLFAKDCPSLEEIIAIDLHSEPSEENLSMFLHLN 459
L+ +DC +E+I++ D +ENL +F L
Sbjct: 611 ILYVEDCALMEDIMSNDSGVSEIDENLGIFSRLT 644
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442703|ref|XP_002280373.1| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 202/514 (39%), Positives = 283/514 (55%), Gaps = 70/514 (13%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+FR +V +++LNSHP+I LA+ VA+ C GLPLALVT+G AMA+ +DP NW I++L++
Sbjct: 315 LFRKEVGEEILNSHPDIPMLAKVVAEECRGLPLALVTLGRAMAAEKDPSNWDKVIQDLRK 374
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
P+ GM ++F LK SYDRL K+CF+Y S+F I +LIELWIGEG L
Sbjct: 375 SPAEITGMEDKLFHRLKLSYDRLPDNASKSCFIYHSIFREDWEIYNYQLIELWIGEGFLG 434
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGA--SK 178
+ H+I A+ +G I+ +LK ACLLE + E K+HD++RDMALW+ G +K
Sbjct: 435 EVHDIHEARDQGKKIINTLKHACLLE--SCGSKEYRVKIHDVIRDMALWLYGEHGVKKNK 492
Query: 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSID-SLSPTPPCCPRLLTLLVRYTM-IKE 236
ILV+ + + + QET+ E ++SLW +D P CP L TL V+ +K+
Sbjct: 493 ILVYNKVARLDEDQETSKLRETEKISLW---DMDVGKFPETLVCPNLKTLFVKKCHNLKK 549
Query: 237 FENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK------ 290
F N FFQ M LRVLD S N LS+L G G+L L+YLNLS T I ELPI +K
Sbjct: 550 FPNGFFQFMLLLRVLDLSDNDNLSELPTGIGKLGALRYLNLSYTRIRELPIELKNLKNLM 609
Query: 291 -------KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSV-PGVTVLLLEELESLKH 342
K+L+ IP M+SSL+SL++FS Y S++ GV +LEELESL
Sbjct: 610 ILIMDGMKSLEIIPQDMISSLISLKLFSI---------YESNITSGVEETVLEELESLND 660
Query: 343 LQEISVIILTLDSLNKLKSSSKLQSCV---------------------RR----QVMGLP 377
+ EIS+II S NKLKSS KLQ C+ +R Q + +
Sbjct: 661 ISEISIIICNALSFNKLKSSHKLQRCICHLYLHKWGDVISLELPSSFFKRTEHLQQLNIS 720
Query: 378 ELSSL----IDISSSSLTTMM--------KGHFSQNLQDLSIINCS-IKDLTCILYIPRL 424
+ L I++ + M + + L + II+CS + DLT ++Y P L
Sbjct: 721 HCNKLKEVKINVEREGIHNGMTLPNKIAAREEYFHTLHRVVIIHCSKLLDLTWLVYAPYL 780
Query: 425 RFLFAKDCPSLEEIIAIDLHSEPSEENLSMFLHL 458
L+ +DC S+EE+I D +E L +F L
Sbjct: 781 EGLYVEDCESIEEVIRDDSEVCEIKEKLDIFSRL 814
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 459 | ||||||
| TAIR|locus:2031366 | 898 | AT1G63350 "AT1G63350" [Arabido | 0.638 | 0.326 | 0.375 | 1.8e-45 | |
| TAIR|locus:2034765 | 884 | AT1G12290 [Arabidopsis thalian | 0.677 | 0.351 | 0.356 | 2.8e-44 | |
| TAIR|locus:2034770 | 894 | SUMM2 "AT1G12280" [Arabidopsis | 0.660 | 0.338 | 0.348 | 3e-44 | |
| TAIR|locus:2197739 | 762 | AT1G61300 [Arabidopsis thalian | 0.629 | 0.379 | 0.360 | 3.3e-44 | |
| TAIR|locus:2201996 | 889 | RPS5 "AT1G12220" [Arabidopsis | 0.660 | 0.340 | 0.358 | 1e-43 | |
| TAIR|locus:2166320 | 888 | AT5G63020 [Arabidopsis thalian | 0.612 | 0.316 | 0.372 | 9e-43 | |
| TAIR|locus:2031356 | 884 | AT1G63360 [Arabidopsis thalian | 0.640 | 0.332 | 0.349 | 1.3e-41 | |
| TAIR|locus:2201986 | 885 | RFL1 "AT1G12210" [Arabidopsis | 0.636 | 0.329 | 0.343 | 1.6e-41 | |
| TAIR|locus:2203881 | 893 | AT1G62630 [Arabidopsis thalian | 0.710 | 0.365 | 0.340 | 2.8e-41 | |
| TAIR|locus:2005517 | 909 | RPS2 "RESISTANT TO P. SYRINGAE | 0.623 | 0.314 | 0.345 | 3e-41 |
| TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.8e-45, Sum P(2) = 1.8e-45
Identities = 112/298 (37%), Positives = 158/298 (53%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV L S PEIREL+ VA C GLPLAL + M+ +R WR+AI L
Sbjct: 317 LFQKKVGQITLGSDPEIRELSRVVAKKCCGLPLALNVVSETMSCKRTVQEWRHAIYVLNS 376
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXXR 120
Y + F GM ++ PLLK+SYD L E K C LYC+LFP I K+
Sbjct: 377 YAAKFSGMDDKILPLLKYSYDSLKGEDVKMCLLYCALFPEDAKIRKENLIEYWICEEIID 436
Query: 121 DSHNIAAAKREGNLILESLKLACLL-EEVEVNNSEDFFKMHDILRDMALWIASSQGASKI 179
S I A+ +G I+ SL A LL EEVE++ + + +HD++R+MALWIAS G
Sbjct: 437 GSEGIDKAENQGYEIIGSLVRASLLMEEVELDGA-NIVCLHDVVREMALWIASDLGKQNE 495
Query: 180 LVFQETDKSIK-VQETASWNEAVRVSLWRSPSIDXXXXXXXXXXXXXXXXVRYTMIKEFE 238
++ + + +WN R+SL ++ +I ++ T +++
Sbjct: 496 AFIVRASVGLREILKVENWNVVRRMSLMKN-NI-AHLDGRLDCMELTTLLLQSTHLEKIS 553
Query: 239 NKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAI 296
++FF SM L VLD S N LS+L G EL+ LQYLNLS+T I LP G+++ K I
Sbjct: 554 SEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLI 611
|
|
| TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 2.8e-44, Sum P(2) = 2.8e-44
Identities = 112/314 (35%), Positives = 159/314 (50%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV D L+SHP+I E+A VA C GLPLAL IG MA ++ W A++
Sbjct: 320 LFKKKVGDITLSSHPDIPEIARKVAQACCGLPLALNVIGETMACKKTTQEWDRAVDVSTT 379
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXXR 120
Y + F + R+ P+LK+SYD L SE+ KTCFLYCSLFP +I K+
Sbjct: 380 YAANFGAVKERILPILKYSYDNLESESVKTCFLYCSLFPEDDLIEKERLIDYWICEGFID 439
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKI- 179
N A EG IL +L A LL E N++ + KMHD++R+MALWIAS K
Sbjct: 440 GDENKKGAVGEGYEILGTLVCASLLVEGGKFNNKSYVKMHDVVREMALWIASDLRKHKDN 499
Query: 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDXXXXXXXXXXXXXXXXVRYTMIKEFEN 239
+ + + ++ + W R+SL + + ++
Sbjct: 500 CIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLTTLFLQDNRHLVN-ISG 558
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAG 299
+FF+SM L VLD S N LS L EL+ L+YL+LS ++I LP+G+ K LK +
Sbjct: 559 EFFRSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIGRLPVGLLK-LKKLMHL 617
Query: 300 MLSSLLSLRVFSWV 313
L S+L L S +
Sbjct: 618 NLESMLCLESVSGI 631
|
|
| TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 3.0e-44, Sum P(2) = 3.0e-44
Identities = 108/310 (34%), Positives = 160/310 (51%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F++KV ++ L HP+I ELA VA C GLPLAL IG MA +R WR AI+ L
Sbjct: 321 LFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGETMACKRMVQEWRNAIDVLSS 380
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXXR 120
Y + F GM ++ P+LK+SYD L E K CFLYCSLFP + K+
Sbjct: 381 YAAEFPGM-EQILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEGFID 439
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
++ + A +G I+ L ACLL E +N + KMHD++R+MALWIAS G K
Sbjct: 440 ENESRERALSQGYEIIGILVRACLLLEEAINKEQ--VKMHDVVREMALWIASDLGEHKER 497
Query: 181 VFQETDKSIK-VQETASWNEAVRVSLWRSPSIDXXXXXXXXXXXXXXXXVRYTMIKEFEN 239
+ ++ V + +W+ R+SL + I+ + + +
Sbjct: 498 CIVQVGVGLREVPKVKNWSSVRRMSLMEN-EIEILSGSPECLELTTLFLQKNDSLLHISD 556
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK--KNLKAIP 297
+FF+ + L VLD S N+ L KL +L+ L+YL+LS T I LP+G++ K L+ +
Sbjct: 557 EFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLR 616
Query: 298 AGMLSSLLSL 307
+ L S+
Sbjct: 617 LDYMKRLKSI 626
|
|
| TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 3.3e-44, Sum P(2) = 3.3e-44
Identities = 107/297 (36%), Positives = 150/297 (50%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV D+ L S P I ELA VA C GLPLAL IG MAS+ W +AI+ L R
Sbjct: 206 LFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGETMASKTMVQEWEHAIDVLTR 265
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXXR 120
+ F MG ++ P+LK+SYD L E K+CFLYC+LFP I +
Sbjct: 266 SAAEFSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFPEDDEIYNEKLIDYWICEGFIG 325
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
+ I A+ +G +L +L LA LL +V + MHD++R+MALWIAS G K
Sbjct: 326 EDQVIKRARNKGYEMLGTLTLANLLTKV----GTEHVVMHDVVREMALWIASDFGKQKEN 381
Query: 181 VFQETDKSIKVQ-ETASWNEAVRVSLWRSPSIDXXXXXXXXXXXXXXXXVRYTMIKEFEN 239
+ + E W R+SL + I+ ++ +K
Sbjct: 382 FVVRARVGLHERPEAKDWGAVRRMSLMDN-HIEEITCESKCSELTTLF-LQSNQLKNLSG 439
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAI 296
+F + M L VLD S N +KL L+ LQ+L+LSNT+I +LP+G+KK LK +
Sbjct: 440 EFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKK-LKKL 495
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| TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
Identities = 111/310 (35%), Positives = 155/310 (50%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F++KV + L SHP+I LA VA C GLPLAL IG AMA +R W +AI+ L
Sbjct: 321 LFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWCHAIDVLTS 380
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXXR 120
F GM + +LK+SYD L E K+CFLYCSLFP +I K+
Sbjct: 381 SAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFIN 440
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
+ +G I+ +L ACLL E E N S KMHD++R+MALWI+S G K
Sbjct: 441 EKEGRERNINQGYEIIGTLVRACLLLEEERNKSN--VKMHDVVREMALWISSDLGKQKEK 498
Query: 181 VFQETDKSIK-VQETASWNEAVRVSLWRSPSIDXXXXXXXXXXXXXXXXVRYTMIKEFEN 239
++ V + WN ++SL + I+ + ++K
Sbjct: 499 CIVRAGVGLREVPKVKDWNTVRKISLMNN-EIEEIFDSHECAALTTLFLQKNDVVK-ISA 556
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAG 299
+FF+ M L VLD S+N L++L EL L+Y NLS T I +LP+G+ K I
Sbjct: 557 EFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLN 616
Query: 300 M--LSSLLSL 307
+ +SSL S+
Sbjct: 617 LEHMSSLGSI 626
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| TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 9.0e-43, Sum P(3) = 9.0e-43
Identities = 108/290 (37%), Positives = 142/290 (48%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F KV + L SHPEI +A TVA C GLPLAL IG MA +R WR AI+ L
Sbjct: 319 LFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTS 378
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXXR 120
+ F GM + P+LK+SYD L SE K CF YC+LFP I K+
Sbjct: 379 SAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFI- 437
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKI- 179
N A+ +G I+ L +CLL E +++ KMHD++R+MALWIAS G K
Sbjct: 438 -DRNKGKAENQGYEIIGILVRSCLLME----ENQETVKMHDVVREMALWIASDFGKQKEN 492
Query: 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDXXXXXXXXXXXXXXXXVRYTMIKEFEN 239
+ Q +S + E W A RVSL + +I+ +R + +
Sbjct: 493 FIVQAGLQSRNIPEIEKWKVARRVSLMFN-NIESIRDAPESPQLITLL-LRKNFLGHISS 550
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGI 289
FF+ M L VLD S N L L E + LQYL+LS T I P G+
Sbjct: 551 SFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGL 600
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| TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 106/303 (34%), Positives = 146/303 (48%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV L S P I +LA VA C GLPLAL IG M+ +R WR+AI L
Sbjct: 317 LFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRHAIHVLNS 376
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXXR 120
Y + F GM +V PLLK+SYD L E K+ LYC+L+P I+K+
Sbjct: 377 YAAEFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPEDAKILKEDLIEHWICEEIID 436
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
S I A+ +G I+ L A LL E + + MHD++R+MALWIAS G K
Sbjct: 437 GSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMHDVVREMALWIASELGIQKEA 496
Query: 181 VFQETDKSIK-VQETASWNEAVRVSLWRSP------SIDXXXXXXXXXXXXXXXXVRYTM 233
++ + + +WN R+SL + S + +R +
Sbjct: 497 FIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMELTTLLLGKREYGSIR-SQ 555
Query: 234 IKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNL 293
+K ++FF M L VLD S N L +L L+ L+YLNL T I LP GI++ L
Sbjct: 556 LKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQE-L 614
Query: 294 KAI 296
K I
Sbjct: 615 KKI 617
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| TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 102/297 (34%), Positives = 149/297 (50%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+ + KV ++ L SHP+I +LA V++ C GLPLAL IG M+ +R WR+A E L
Sbjct: 321 LLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGETMSFKRTIQEWRHATEVLTS 380
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXXR 120
+ F GM + P+LK+SYD L E K+CFLYCSLFP I K+ +
Sbjct: 381 -ATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIK 439
Query: 121 DSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKIL 180
+ A +G IL +L + LL +E +D MHD++R+MALWI S G K
Sbjct: 440 EKQGREKAFNQGYDILGTLVRSSLL--LEGAKDKDVVSMHDMVREMALWIFSDLGKHKER 497
Query: 181 VFQETDKSI-KVQETASWNEAVRVSLWRSPSIDXXXXXXXXXXXXXXXXVRYTMIKEFEN 239
+ + ++ E +W R+SL + Y ++ +
Sbjct: 498 CIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQNNYKLV-DISM 556
Query: 240 KFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAI 296
+FF+ M +L VLD S+N LS+L EL+ LQYL+LS T I LP G+ + K +
Sbjct: 557 EFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLV 613
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| TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 115/338 (34%), Positives = 159/338 (47%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F+ KV L S P I +LA VA C GLPLAL IG M+ +R WR AI L
Sbjct: 317 LFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNS 376
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXXR 120
Y + F GM ++ PLLK+SYD L E K+ LYC+L+P I K+
Sbjct: 377 YAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPEDAKIRKEDLIEHWICEEIID 436
Query: 121 DSHNIAAAKREGNLILESLKLACLLEE-VEVNNSEDFFKMHDILRDMALWIASSQGASKI 179
S I A+ +G I+ SL A LL E V++ MHD++R+MALWIAS G K
Sbjct: 437 GSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVI-MHDVVREMALWIASELGIQKE 495
Query: 180 LVFQETDKSIK-VQETASWNEAVRVSLWRSP------SIDXXXXXXXXXXXXXXXXV-RY 231
++ + + +WN R+SL + S + + R+
Sbjct: 496 AFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEYGSIWRW 555
Query: 232 TMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKK 291
+ IK ++FF M L VLD S N L +L L+ L+YLNLS+T I L GI++
Sbjct: 556 SEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQE 615
Query: 292 NLKAIPAGM--LSSLLSLRVFSWVPTRYAGFNYGSSVP 327
K I + S L S+ S + YGS +P
Sbjct: 616 LKKIIHLNLEHTSKLESIDGISSLHNLKVLKLYGSRLP 653
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| TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
Identities = 103/298 (34%), Positives = 153/298 (51%)
Query: 1 MFRLKV-TDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQ 59
+F KV D+L S IR LAE + CGGLPLAL+T+G AMA R + W +A E L
Sbjct: 318 LFCSKVWRKDLLESS-SIRRLAEIIVSKCGGLPLALITLGGAMAHRETEEEWIHASEVLT 376
Query: 60 RYPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDXXXXXXXXXXXX 119
R+P+ +GM VF LLKFSYD L S+ ++CFLYC+LFP I +
Sbjct: 377 RFPAEMKGMNY-VFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFL 435
Query: 120 RDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKI 179
SH + + G ++ LK ACLLE + + KMH+++R ALW+AS QG K
Sbjct: 436 TSSHGVNTIYK-GYFLIGDLKAACLLE---TGDEKTQVKMHNVVRSFALWMASEQGTYKE 491
Query: 180 LVFQETDKS-IKVQETASWNEAVRVSLWRSPSIDXXXXXXXXXXXXXXXXVRYTMIKEFE 238
L+ E + + +W +A+ +SL + I + + +K+
Sbjct: 492 LILVEPSMGHTEAPKAENWRQALVISLLDN-RIQTLPEKLICPKLTTLMLQQNSSLKKIP 550
Query: 239 NKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELP--IGIKKNLK 294
FF M LRVLD S + ++++ + L++L +L++S T I LP +G + LK
Sbjct: 551 TGFFMHMPVLRVLDLSFTS-ITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLK 607
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00035743001 | SubName- Full=Chromosome undetermined scaffold_80, whole genome shotgun sequence; (908 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 459 | |||
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 5e-28 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 5e-28
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 60
+F KV + L PE+ E+A+ + + C GLPLAL +G +A + W + +E+L
Sbjct: 164 LFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNN 223
Query: 61 YPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLR 120
+G +G+ V +L SYD L K CFLY +LFP I K++LI+LWI EG +
Sbjct: 224 ELAGRDGL-NEVLSILSLSYDNLPMHL-KRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281
Query: 121 DSH 123
S
Sbjct: 282 PSD 284
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Length = 285 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 459 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.76 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.71 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.67 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.67 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.58 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.57 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.56 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.53 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.52 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.52 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.39 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.39 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.36 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.35 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.34 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.27 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.22 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.18 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.04 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.04 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.97 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.92 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.86 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.83 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.78 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.71 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.7 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.7 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.62 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.58 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.4 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.4 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.37 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.31 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.29 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.26 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.24 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.18 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.15 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.05 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.89 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.8 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.79 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.78 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.76 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.58 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.53 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.41 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.32 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.28 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.25 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.17 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.14 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.1 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.09 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.03 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.94 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.38 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.33 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.2 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.06 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.34 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.22 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 95.15 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.25 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.12 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 93.92 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 93.92 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.07 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.92 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 91.86 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 90.42 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.99 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.99 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 88.15 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 87.29 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 87.27 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 86.21 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 84.54 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 82.84 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 82.02 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 81.49 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=480.33 Aligned_cols=430 Identities=38% Similarity=0.611 Sum_probs=354.1
Q ss_pred CcccccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcC-CCCCCCCcccchhhhhhh
Q 012641 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRY-PSGFEGMGTRVFPLLKFS 79 (459)
Q Consensus 1 LF~~~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~-~~~~~~~~~~i~~~l~~s 79 (459)
||+++||..+....+.++++|++||++|+|+|||++++|+.|+.|++.++|+++.+.+.+. ..+.+.+.+.+.++|++|
T Consensus 325 LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklS 404 (889)
T KOG4658|consen 325 LFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLS 404 (889)
T ss_pred HHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhcc
Confidence 6899999886666777999999999999999999999999999999999999999999888 556666677999999999
Q ss_pred hcCCCchhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEee
Q 012641 80 YDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKM 159 (459)
Q Consensus 80 y~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~ 159 (459)
||.||+ ++|.||+|||+||+||.|++++||.+|+||||+.+..+..++++.|++|+.+|+.++|++.....+...+|+|
T Consensus 405 yd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~km 483 (889)
T KOG4658|consen 405 YDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKM 483 (889)
T ss_pred HhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEe
Confidence 999997 7999999999999999999999999999999999976789999999999999999999998775456799999
Q ss_pred hHHHHHHHHHHHhccCCcc-eEEEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeeccc--ccc
Q 012641 160 HDILRDMALWIASSQGASK-ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTM--IKE 236 (459)
Q Consensus 160 hdli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~ 236 (459)
||++|+||.++|.+.+.++ ..++..+.+....|....|..+|+++++++ .+..+ +....+++|++|.+..|. +..
T Consensus 484 HDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~-~~~~~-~~~~~~~~L~tLll~~n~~~l~~ 561 (889)
T KOG4658|consen 484 HDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN-KIEHI-AGSSENPKLRTLLLQRNSDWLLE 561 (889)
T ss_pred eHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc-chhhc-cCCCCCCccceEEEeecchhhhh
Confidence 9999999999999666544 566777677788888899999999999999 88888 666777899999999995 789
Q ss_pred cchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHh-------------hhhCCCCcCCC
Q 012641 237 FENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKN-------------LKAIPAGMLSS 303 (459)
Q Consensus 237 ~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L-------------l~~lp~~~i~~ 303 (459)
++.+||..|+.||||||++|..+.++|.+|+.|.+||||+++++.++.||.++++| +..+|.. +..
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~ 640 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLE 640 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhh
Confidence 99999999999999999999899999999999999999999999999999999998 2344443 666
Q ss_pred CCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhcc--------
Q 012641 304 LLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMG-------- 375 (459)
Q Consensus 304 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~-------- 375 (459)
|++||+|.+....... ......++.+|++|+.+.+...+...+..+..+.++.++.+.+.+.
T Consensus 641 L~~Lr~L~l~~s~~~~----------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~ 710 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSN----------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI 710 (889)
T ss_pred cccccEEEeecccccc----------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee
Confidence 9999999997765322 5667888999999999998765554445565666666666555541
Q ss_pred --CCCCCCccccCccccCC------ccCc---cc-ccCccEEEEecC-CCCCCcccccCCCcceeecccCcchhhhcccc
Q 012641 376 --LPELSSLIDISSSSLTT------MMKG---HF-SQNLQDLSIINC-SIKDLTCILYIPRLRFLFAKDCPSLEEIIAID 442 (459)
Q Consensus 376 --~~~l~~l~~~~l~~~~~------~i~~---~~-l~~L~~L~L~~~-~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~~~ 442 (459)
...+.+|+.+.+..+.. |... .. |+++..+.+.+| ....+.|..-.|+|+.|.+..|..+++++...
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHH
Confidence 22233333333322211 1111 12 556777777777 77777776678999999999999999888754
Q ss_pred CC
Q 012641 443 LH 444 (459)
Q Consensus 443 ~~ 444 (459)
..
T Consensus 791 k~ 792 (889)
T KOG4658|consen 791 KA 792 (889)
T ss_pred HH
Confidence 44
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=350.98 Aligned_cols=284 Identities=22% Similarity=0.277 Sum_probs=199.7
Q ss_pred CcccccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhh
Q 012641 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSY 80 (459)
Q Consensus 1 LF~~~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy 80 (459)
||+++||++. .+++++++++++||++|+|+||||+++|++|++ ++.++|+.+++.+++... ++|..+|++||
T Consensus 359 LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~------~~I~~~L~~SY 430 (1153)
T PLN03210 359 MFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD------GKIEKTLRVSY 430 (1153)
T ss_pred HHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc------HHHHHHHHHhh
Confidence 6899999876 556789999999999999999999999999998 789999999999887543 37999999999
Q ss_pred cCCCchhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeeh
Q 012641 81 DRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMH 160 (459)
Q Consensus 81 ~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~h 160 (459)
++|+++..|.||+|+|+||.++.+ +.+..|.|.+..... ..++.|++++|++.. .+.++||
T Consensus 431 d~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~-----------~~l~~L~~ksLi~~~-----~~~~~MH 491 (1153)
T PLN03210 431 DGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN-----------IGLKNLVDKSLIHVR-----EDIVEMH 491 (1153)
T ss_pred hccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch-----------hChHHHHhcCCEEEc-----CCeEEhh
Confidence 999863499999999999998644 346677776544321 128899999999865 4579999
Q ss_pred HHHHHHHHHHHhccCCcc---eEEEecCCCccccc--------------------------cccccccceEEEeecCCCc
Q 012641 161 DILRDMALWIASSQGASK---ILVFQETDKSIKVQ--------------------------ETASWNEAVRVSLWRSPSI 211 (459)
Q Consensus 161 dli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------------------~~~~~~~~r~l~l~~~~~~ 211 (459)
|++|+||+.++++++.+. .+++...+...... ......+++.+.+..+ ..
T Consensus 492 dLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~-~~ 570 (1153)
T PLN03210 492 SLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK-KW 570 (1153)
T ss_pred hHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecc-cc
Confidence 999999999998764221 34443221100000 1122334444444332 11
Q ss_pred -------cccCCCCCCC-CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCC-CC
Q 012641 212 -------DSLSPTPPCC-PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT-NI 282 (459)
Q Consensus 212 -------~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~-~l 282 (459)
..+|..+..+ ++||.|.+.++.+..+|.. | .+.+|+.|++.++ .+..+|..+..+++|++|+++++ .+
T Consensus 571 ~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 571 DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred cccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCc
Confidence 1123333333 3577777777777777765 3 4678888888888 78888888888888888888876 46
Q ss_pred cccCHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 283 CELPIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 283 ~~lp~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+.+|. +..+ +..+|.. +++|++|+.|++.+|..
T Consensus 648 ~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 648 KEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred CcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCC
Confidence 66663 2221 4456665 66666666666666543
|
syringae 6; Provisional |
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-19 Score=173.65 Aligned_cols=121 Identities=35% Similarity=0.678 Sum_probs=98.7
Q ss_pred CcccccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhh
Q 012641 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSY 80 (459)
Q Consensus 1 LF~~~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy 80 (459)
||++.++......++.+++++++|+++|+|+||||+++|++|+.+.+..+|+.+++.+........+....+..++.+||
T Consensus 165 L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~ 244 (287)
T PF00931_consen 165 LFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSY 244 (287)
T ss_dssp HHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceech
Confidence 46666665543445667889999999999999999999999977668899999999888876554445568999999999
Q ss_pred cCCCchhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCCcCC
Q 012641 81 DRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDS 122 (459)
Q Consensus 81 ~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~Wia~g~v~~~ 122 (459)
+.||+ ++|+||+|||+||+++.|+++.++++|+++|||...
T Consensus 245 ~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 245 DSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred hcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999 699999999999999999999999999999999875
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.9e-19 Score=163.36 Aligned_cols=97 Identities=29% Similarity=0.350 Sum_probs=87.1
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDL 272 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 272 (459)
+....+.+..+.++.| .+..+ |++.+|+.|..|.+..|.++.+|.+..+++.++.+|||+.| +++++|++++.|++|
T Consensus 201 ~lg~l~~L~~LyL~~N-ki~~l-Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL 277 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRN-KIRFL-PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSL 277 (565)
T ss_pred hhcchhhhHHHHhhhc-ccccC-CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhh
Confidence 4455667777888888 88888 58899999999999889899999997789999999999999 999999999999999
Q ss_pred CEEEcCCCCCcccCHHHHHh
Q 012641 273 QYLNLSNTNICELPIGIKKN 292 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~L 292 (459)
.+||+|+|.|+.+|-++++|
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred hhhcccCCccccCCcccccc
Confidence 99999999999999998887
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-18 Score=166.09 Aligned_cols=230 Identities=20% Similarity=0.247 Sum_probs=178.8
Q ss_pred ccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCC
Q 012641 192 QETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELID 271 (459)
Q Consensus 192 ~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~ 271 (459)
++...++.+..|.++.| .+.++|..+....++-+|++++|.+..||.+.|-++..|-+|||++| .+..+|+.+..|.+
T Consensus 97 ~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSM 174 (1255)
T ss_pred chhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence 34556678999999999 99999988889999999999999999999999999999999999999 99999999999999
Q ss_pred CCEEEcCCCCC-----cccCH--HHHHh--------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh
Q 012641 272 LQYLNLSNTNI-----CELPI--GIKKN--------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE 336 (459)
Q Consensus 272 L~~L~l~~~~l-----~~lp~--~i~~L--------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
|++|+|++|++ .+||+ ++.-| +..+|.. +..|.||+.++++.|.+ ...|+-
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L-------------p~vPec 240 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL-------------PIVPEC 240 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC-------------CcchHH
Confidence 99999999964 46663 22222 7789998 99999999999998875 347888
Q ss_pred hhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccc-----------------cCccccCCccCc---
Q 012641 337 LESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLID-----------------ISSSSLTTMMKG--- 396 (459)
Q Consensus 337 l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~-----------------~~l~~~~~~i~~--- 396 (459)
+-++.+|+.|+++.+ .+.++........++++|.++-+.+..|++ +++++.|+-|..
T Consensus 241 ly~l~~LrrLNLS~N---~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGN---KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HhhhhhhheeccCcC---ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 999999999999654 444444455566667777776666665544 233332332221
Q ss_pred ------------------ccccCccEEEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 397 ------------------HFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 397 ------------------~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
..+..|+.|.|+.|.+..+|. +.-||-|++|+++..+++..-|.
T Consensus 318 Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 318 LEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 234577888888777777775 77788888888888888876665
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-18 Score=165.91 Aligned_cols=236 Identities=19% Similarity=0.209 Sum_probs=175.4
Q ss_pred eEEEecCCCcccccc-ccccccceEEEeecCCCccccCCCCCCCCcceeeeeeccccc--ccchhHHhcCCCccEEEccC
Q 012641 179 ILVFQETDKSIKVQE-TASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIK--EFENKFFQSMHALRVLDSSQ 255 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~ 255 (459)
.++......+..+|+ .+.+.++.+|++.+| .+..+..+++.++.||++.+..|.+. .+|++ +..|..|.+|||++
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSH 112 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecch
Confidence 456666667777774 345678888999988 88887788889999999999888654 68888 77899999999999
Q ss_pred CCCcccccccccCCCCCCEEEcCCCCCcccCHHHH-Hh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCC
Q 012641 256 NAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK-KN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNY 322 (459)
Q Consensus 256 ~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~-~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 322 (459)
| ++++.|..+..-+++-.|+||+|+|..+|..+. +| +..+|+. +.+|.+|++|.+++|.+
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL----- 185 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPL----- 185 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChh-----
Confidence 9 999999988888999999999999999997654 22 7788988 99999999999999887
Q ss_pred CCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccc----------cCcccc--
Q 012641 323 GSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLID----------ISSSSL-- 390 (459)
Q Consensus 323 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~----------~~l~~~-- 390 (459)
...-+..|.+|++|+.|.++.. .....+++.+..-..+|+.++++++.++.++. +++++.
T Consensus 186 -------~hfQLrQLPsmtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 186 -------NHFQLRQLPSMTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred -------hHHHHhcCccchhhhhhhcccc-cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 3345566667777777777542 22344556666656667777777777655433 333321
Q ss_pred -CCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeeccc
Q 012641 391 -TTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKD 431 (459)
Q Consensus 391 -~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~ 431 (459)
.-.+....-.+|+.|+++.|+++.+|. ++.|+.|+.|++.+
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc
Confidence 000111234588888998888888886 88899998888876
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=163.16 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=31.6
Q ss_pred cccCccEEEEecC-CCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 398 FSQNLQDLSIINC-SIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 398 ~l~~L~~L~L~~~-~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.+++|+.|++++| +++.+|. +..+++|+.|++++|.+++.++-
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 4677778888777 7777775 66777777788888877776544
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-15 Score=163.17 Aligned_cols=219 Identities=20% Similarity=0.162 Sum_probs=123.8
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCC
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQ 273 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~ 273 (459)
..+++++|.+.+| .+... .....+++|++|++++|.+. .+|.. ++.+++|++|++++| .+. .+|..++++++|+
T Consensus 116 ~l~~L~~L~Ls~n-~l~~~-~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNN-NFTGS-IPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCC-ccccc-cCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccC-cccccCChhhhhCcCCC
Confidence 3456777777666 44332 12244667777777777654 34444 777777777777777 543 5677777777777
Q ss_pred EEEcCCCCCc-ccCHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc
Q 012641 274 YLNLSNTNIC-ELPIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 339 (459)
Q Consensus 274 ~L~l~~~~l~-~lp~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (459)
+|++++|.+. .+|..++++ ...+|.. ++++++|++|++++|.. .+..+..+++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l------------~~~~p~~l~~ 258 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL------------TGPIPSSLGN 258 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee------------ccccChhHhC
Confidence 7777777654 556665554 1245555 67777777777777665 3445666777
Q ss_pred cccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCC-----------CCccccCcccc--CCccCc--ccccCccE
Q 012641 340 LKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPEL-----------SSLIDISSSSL--TTMMKG--HFSQNLQD 404 (459)
Q Consensus 340 L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l-----------~~l~~~~l~~~--~~~i~~--~~l~~L~~ 404 (459)
+++|+.|++..+.... .++........|+.|+++.+.+ ++|+.+++... .+.++. ..+++|+.
T Consensus 259 l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 259 LKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CCCCCEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 7777777775432211 1111112223455555533322 22222222221 111111 34667777
Q ss_pred EEEecCCCC-CCcc-cccCCCcceeecccCc
Q 012641 405 LSIINCSIK-DLTC-ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 405 L~L~~~~l~-~lp~-l~~l~~L~~L~l~~c~ 433 (459)
|++++|.+. .+|. ++.+++|+.|+++++.
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 777777433 4453 6667777777777643
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-16 Score=131.42 Aligned_cols=148 Identities=21% Similarity=0.288 Sum_probs=125.8
Q ss_pred ccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccccc
Q 012641 188 SIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEG 267 (459)
Q Consensus 188 ~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~ 267 (459)
..+++.....+.+.++.+++| .+..+|+.+..+.+|++|++++|.++.+|.+ +++|+.||.|+++.| .+..+|..+|
T Consensus 23 f~~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccC
Confidence 334455555678999999999 9999999999999999999999999999998 999999999999999 9999999999
Q ss_pred CCCCCCEEEcCCCCCc--ccCHHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccc
Q 012641 268 ELIDLQYLNLSNTNIC--ELPIGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL 333 (459)
Q Consensus 268 ~L~~L~~L~l~~~~l~--~lp~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 333 (459)
.++-|+.||+.+|++. .+|..+.-+ .+.+|.+ +++|++||.|.+..|... ..
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll-------------~l 165 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLL-------------SL 165 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchh-------------hC
Confidence 9999999999999765 778665544 5678888 888888888888887753 37
Q ss_pred hhhhhccccCceeEEEEeC
Q 012641 334 LEELESLKHLQEISVIILT 352 (459)
Q Consensus 334 ~~~l~~L~~L~~L~l~~~~ 352 (459)
+++++.|+.|++|.+..+.
T Consensus 166 pkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cHHHHHHHHHHHHhcccce
Confidence 8888888888888886543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-16 Score=148.66 Aligned_cols=217 Identities=22% Similarity=0.267 Sum_probs=114.2
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcC
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 278 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~ 278 (459)
.+..+.+++| ...++|+.+..+..+..++.++|.+..+|+. ++++..|+.|+.++| .+.++|++|+.+..|..|+..
T Consensus 69 ~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcc
Confidence 3444555555 5555555555555555555555555555555 555555555555555 555555555555555555555
Q ss_pred CCCCcccCHHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCcee
Q 012641 279 NTNICELPIGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEI 346 (459)
Q Consensus 279 ~~~l~~lp~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 346 (459)
+|++..+|.++..+ ++.+|+. .-+|+.|++|+...|-. ...|.+++.|.+|..|
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L-------------~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLL-------------ETLPPELGGLESLELL 211 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhh-------------hcCChhhcchhhhHHH
Confidence 55555555555444 4445544 33355555555544432 2355555555555555
Q ss_pred EEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcc-----------ccCcccc-CCccCc--ccccCccEEEEecCCC
Q 012641 347 SVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLI-----------DISSSSL-TTMMKG--HFSQNLQDLSIINCSI 412 (459)
Q Consensus 347 ~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~-----------~~~l~~~-~~~i~~--~~l~~L~~L~L~~~~l 412 (459)
++..++...+.+++... .|..++++.+.++-++ .+++... -...|+ -.+.+|++|++++|.+
T Consensus 212 yL~~Nki~~lPef~gcs----~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 212 YLRRNKIRFLPEFPGCS----LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred HhhhcccccCCCCCccH----HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence 55544433333332221 2333444333322221 1111110 011112 2366788888888888
Q ss_pred CCCcc-cccCCCcceeecccCcchhhh
Q 012641 413 KDLTC-ILYIPRLRFLFAKDCPSLEEI 438 (459)
Q Consensus 413 ~~lp~-l~~l~~L~~L~l~~c~~l~~i 438 (459)
..+|. +|++ .|+.|.+.|.+ ++.|
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNP-lrTi 312 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNP-LRTI 312 (565)
T ss_pred ccCCcccccc-eeeehhhcCCc-hHHH
Confidence 88886 8888 88888888843 4444
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-14 Score=157.96 Aligned_cols=221 Identities=15% Similarity=0.140 Sum_probs=150.1
Q ss_pred ccccceEEEeecCCCcc-ccCCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCC
Q 012641 196 SWNEAVRVSLWRSPSID-SLSPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDL 272 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L 272 (459)
....++.|.+.+| .+. .+|..+..+++|++|++++|.+. .+|.. ++.+++|++|++++| .+. .+|..++.+++|
T Consensus 138 ~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 138 SIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-QLVGQIPRELGQMKSL 214 (968)
T ss_pred ccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-CCcCcCChHHcCcCCc
Confidence 3567888888888 554 56566778888888888888665 45554 888888888888888 554 568888888888
Q ss_pred CEEEcCCCCCc-ccCHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 273 QYLNLSNTNIC-ELPIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 273 ~~L~l~~~~l~-~lp~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
++|++++|.+. .+|..++.+ ...+|.. ++++++|++|++++|.+ ....+..+.
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l------------~~~~p~~l~ 281 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL------------SGPIPPSIF 281 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCee------------eccCchhHh
Confidence 88888888776 678777766 2356776 88999999999988876 445667778
Q ss_pred ccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC-----------CCCccccCcccc--CCccCc--ccccCcc
Q 012641 339 SLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE-----------LSSLIDISSSSL--TTMMKG--HFSQNLQ 403 (459)
Q Consensus 339 ~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~-----------l~~l~~~~l~~~--~~~i~~--~~l~~L~ 403 (459)
++++|+.|+++.+.... .++........|+.|++..+. ++.|..+++... .+.+|. ..+++|+
T Consensus 282 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 282 SLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred hccCcCEEECcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 88888888876443221 111111122345555553222 233333444331 111221 3578999
Q ss_pred EEEEecCCCC-CCc-ccccCCCcceeecccCcc
Q 012641 404 DLSIINCSIK-DLT-CILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 404 ~L~L~~~~l~-~lp-~l~~l~~L~~L~l~~c~~ 434 (459)
.|++++|.+. .+| .+..+++|+.|+++++.-
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 9999999543 455 478899999999987543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-15 Score=143.79 Aligned_cols=239 Identities=18% Similarity=0.207 Sum_probs=131.1
Q ss_pred cccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCE
Q 012641 197 WNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQY 274 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~ 274 (459)
...+|.+.++.| .+..++ +.+..-.+++.|++.+|.+..+-...|.++.+|-+|.|+.| .++.+|.. +.+|++|+.
T Consensus 148 l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 148 LPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred Hhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 344555555555 555554 44444456666666666666665555666667777777777 77777643 344777777
Q ss_pred EEcCCCCCccc-C------HHHHHh------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC----------CCC--Cc
Q 012641 275 LNLSNTNICEL-P------IGIKKN------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS----------SVP--GV 329 (459)
Q Consensus 275 L~l~~~~l~~l-p------~~i~~L------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~~~--~~ 329 (459)
|+|..|.|..+ . .++.++ +..+..+++..|.++++|++..|.+..+..|. +++ .-
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 77777765543 1 222222 55666666777777777777776654321110 000 00
Q ss_pred cccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC-----------CCCccccCcccc-CCc----
Q 012641 330 TVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE-----------LSSLIDISSSSL-TTM---- 393 (459)
Q Consensus 330 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~-----------l~~l~~~~l~~~-~~~---- 393 (459)
....+......+.|+.|+++.+....+++- ...-...|+.|.++-+. +++|..+++... -+|
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~--sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEG--SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChh--HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 122233334445555555554433322110 01112234444443333 333333444431 122
Q ss_pred --cCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCcchhhhcc
Q 012641 394 --MKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 394 --i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.+...++.|++|.+.||+++.+|. +..|++|++|+|.+ +.+.+|-.
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~ 433 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGD-NAIASIQP 433 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCC-Ccceeecc
Confidence 112347888889998888888884 78888999998887 55555544
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-14 Score=145.73 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=83.6
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcC
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 278 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~ 278 (459)
++++|.+.++ .+..+|..+..+++|+.|.++.|.+..+|.+ ..+|++|++|.|.+| .+..+|.++..+++|+||+++
T Consensus 46 ~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 3888999999 9999999999999999999999999999977 999999999999999 999999999999999999999
Q ss_pred CCCCcccCHHHHHh
Q 012641 279 NTNICELPIGIKKN 292 (459)
Q Consensus 279 ~~~l~~lp~~i~~L 292 (459)
+|.+..+|.-+..+
T Consensus 123 ~N~f~~~Pl~i~~l 136 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVL 136 (1081)
T ss_pred hhccCCCchhHHhh
Confidence 99999998666554
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-14 Score=121.00 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=105.6
Q ss_pred ccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHH
Q 012641 211 IDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK 290 (459)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~ 290 (459)
+.++ +.+..++++..|.+++|.+..+|+. +..+.+|++|++++| +++.+|.+|+.|+.|+.|+++-|.+..+|.+
T Consensus 23 f~~~-~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprg-- 97 (264)
T KOG0617|consen 23 FEEL-PGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRG-- 97 (264)
T ss_pred Hhhc-ccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccc--
Confidence 4445 6777888999999999999999998 999999999999999 9999999999999999999999988777765
Q ss_pred HhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCC------------CCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 291 KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSV------------PGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 291 ~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
++.+..|+.|++.+|...+-..+.++ .+.....+.++++|++||.|.++.++. -.
T Consensus 98 ----------fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl---l~ 164 (264)
T KOG0617|consen 98 ----------FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL---LS 164 (264)
T ss_pred ----------cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch---hh
Confidence 55566666666655554321111000 000233677788888888877764432 22
Q ss_pred hhcchhHHhhhhhhhccCCCCCCc
Q 012641 359 LKSSSKLQSCVRRQVMGLPELSSL 382 (459)
Q Consensus 359 l~~~~~l~~~L~~L~l~~~~l~~l 382 (459)
++........|+.|++..+.++-+
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeec
Confidence 233333334455555554444433
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-12 Score=133.81 Aligned_cols=216 Identities=19% Similarity=0.163 Sum_probs=118.7
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC-
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA- 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~- 257 (459)
..+...+..+..+|... ..+++.|.+.+| .++.+|. .+++|++|++++|.+..+|.. .++|+.|++++|.
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCC-cCCCCCC---CCCCCcEEEecCCccCcccCc----ccccceeeccCCch
Confidence 44555566677766533 246788888888 8887753 247788888888877776642 2344455444440
Q ss_pred ------------------CcccccccccCCCCCCEEEcCCCCCcccCH---HHHHh------hhhCCCCcCCCCCCCCEe
Q 012641 258 ------------------KLSKLHVGEGELIDLQYLNLSNTNICELPI---GIKKN------LKAIPAGMLSSLLSLRVF 310 (459)
Q Consensus 258 ------------------~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~---~i~~L------l~~lp~~~i~~L~~L~~L 310 (459)
.++.+|. .+++|++|++++|.++.+|. .+..| +..+|.. ..+|+.|
T Consensus 275 ~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l----p~~Lq~L 347 (788)
T PRK15387 275 THLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL----PSGLQEL 347 (788)
T ss_pred hhhhhchhhcCEEECcCCccccccc---cccccceeECCCCccccCCCCcccccccccccCcccccccc----ccccceE
Confidence 4444443 23567777887777776654 22222 4444431 1468888
Q ss_pred eecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcc-------
Q 012641 311 SWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLI------- 383 (459)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~------- 383 (459)
++++|.+...+. . ..+|+.|++..+....+..+ ...|+.|+++.+.+..++
T Consensus 348 dLS~N~Ls~LP~-------------l---p~~L~~L~Ls~N~L~~LP~l------~~~L~~LdLs~N~Lt~LP~l~s~L~ 405 (788)
T PRK15387 348 SVSDNQLASLPT-------------L---PSELYKLWAYNNRLTSLPAL------PSGLKELIVSGNRLTSLPVLPSELK 405 (788)
T ss_pred ecCCCccCCCCC-------------C---CcccceehhhccccccCccc------ccccceEEecCCcccCCCCcccCCC
Confidence 888887643211 0 12333333332222211111 123444444333333221
Q ss_pred ccCcccc-CCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccCc
Q 012641 384 DISSSSL-TTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 384 ~~~l~~~-~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~ 433 (459)
.+++... -..+| ..+.+|+.|++++|.++.+|. ++.+++|+.|++++++
T Consensus 406 ~LdLS~N~LssIP-~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 406 ELMVSGNRLTSLP-MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EEEccCCcCCCCC-cchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 1111110 01112 124578889999998888885 8889999999998844
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-13 Score=129.01 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=138.0
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQY 274 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~ 274 (459)
.+.+++.+.+..| .+..+|.......+|+.|++.+|.+..+..+-+..++.||+|||+.| .|+.+|. ++..=.++++
T Consensus 100 nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceE
Confidence 4467788888888 88888655555667888888888888777777888888888888888 8888864 3555578888
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
|+|++|.|+.+-.+ .+.+|.+|..|.++.|.+ +...+..+..|++|+.|++..+...
T Consensus 178 L~La~N~It~l~~~-----------~F~~lnsL~tlkLsrNri------------ttLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 178 LNLASNRITTLETG-----------HFDSLNSLLTLKLSRNRI------------TTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred Eeeccccccccccc-----------cccccchheeeecccCcc------------cccCHHHhhhcchhhhhhcccccee
Confidence 88888888876532 266666777777777765 3344556666777777776544322
Q ss_pred hhhhhhcchhHHhhhhhhhccCCCCCCcc-----------ccCccc------cCCccCcccccCccEEEEecCCCCCCcc
Q 012641 355 SLNKLKSSSKLQSCVRRQVMGLPELSSLI-----------DISSSS------LTTMMKGHFSQNLQDLSIINCSIKDLTC 417 (459)
Q Consensus 355 ~~~~l~~~~~l~~~L~~L~l~~~~l~~l~-----------~~~l~~------~~~~i~~~~l~~L~~L~L~~~~l~~lp~ 417 (459)
..+.+. .+...+++.|.+.-+++..|. .++++. ..+|+-. +..|+.|+|+.|.+..+..
T Consensus 235 ive~lt--FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg--Lt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 235 IVEGLT--FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG--LTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred eehhhh--hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc--cchhhhhccchhhhheeec
Confidence 211110 011112333333222222222 122221 2456554 7888999999886555542
Q ss_pred --cccCCCcceeecccCcchhhhcc
Q 012641 418 --ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 418 --l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
-...++|++|+|+. +.+.+++.
T Consensus 311 d~WsftqkL~~LdLs~-N~i~~l~~ 334 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSS-NRITRLDE 334 (873)
T ss_pred chhhhcccceeEeccc-cccccCCh
Confidence 23467899999987 77887776
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-13 Score=140.59 Aligned_cols=221 Identities=17% Similarity=0.144 Sum_probs=145.8
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
..+++.+.+..+ .+..+|.++..|.+|+.+...+|.+..+|.. +..+..|+.|+...| .+..+|...+.+++|++|+
T Consensus 240 p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhh-hhhhCCCcccccceeeeee
Confidence 367889999999 9999988889999999999999999999988 888999999999999 9999999999999999999
Q ss_pred cCCCCCcccCHHHHHh--------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhcccc
Q 012641 277 LSNTNICELPIGIKKN--------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKH 342 (459)
Q Consensus 277 l~~~~l~~lp~~i~~L--------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 342 (459)
|..|++..+|..+-.. +..+|...=..+..|+.|++.+|.+ +.....-|.+..+
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L------------td~c~p~l~~~~h 384 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL------------TDSCFPVLVNFKH 384 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc------------cccchhhhccccc
Confidence 9999999999743321 2233321112334555555555555 3344455555566
Q ss_pred CceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCc--c--------c-cCCccC-cccccCccEEEEecC
Q 012641 343 LQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISS--S--------S-LTTMMK-GHFSQNLQDLSIINC 410 (459)
Q Consensus 343 L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l--~--------~-~~~~i~-~~~l~~L~~L~L~~~ 410 (459)
|+.|+++.+....+.+-. ......|+.|.++.+.++.|.+... . + .-...| ...++.|+.+|++.|
T Consensus 385 LKVLhLsyNrL~~fpas~--~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASK--LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeeeecccccccCCHHH--HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccc
Confidence 666666544333222210 1122234555555555555443100 0 0 000011 245789999999988
Q ss_pred CCCCCc--ccccCCCcceeecccCcc
Q 012641 411 SIKDLT--CILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 411 ~l~~lp--~l~~l~~L~~L~l~~c~~ 434 (459)
+++.+- ...--|+|++|+++|...
T Consensus 463 ~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 463 NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhhCCCcccceeeccCCcc
Confidence 666543 221127999999998664
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=128.21 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=73.2
Q ss_pred ecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc
Q 012641 183 QETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
..+..+..+|... .+.++.|.+.+| .+..+|..+. ++|++|++++|.+..+|.. +. .+|+.|+|++| .+..+
T Consensus 185 L~~~~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~N-~L~~L 256 (754)
T PRK15370 185 LKILGLTTIPACI-PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPAT-LP--DTIQEMELSIN-RITEL 256 (754)
T ss_pred eCCCCcCcCCccc-ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChh-hh--ccccEEECcCC-ccCcC
Confidence 3444555555422 246777888877 7777754433 4788888887777777765 22 46778888888 77777
Q ss_pred cccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 263 HVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 263 P~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
|..+. .+|++|++++|++..+|.. +. .+|+.|++++|.+.
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~------------l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPEN------------LP--EELRYLSVYDNSIR 296 (754)
T ss_pred ChhHh--CCCCEEECcCCccCccccc------------cC--CCCcEEECCCCccc
Confidence 77664 4678888887777766643 22 36777777776653
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-11 Score=125.67 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=81.5
Q ss_pred ceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCC
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSN 279 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~ 279 (459)
-..|.+..+ .+..+|+.+. ++|+.|.+.+|.+..+|. .+++|++|++++| .++.+|.. ..+|+.|++++
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446788888 8888876554 489999999999988885 3589999999999 99999864 46888999999
Q ss_pred CCCcccCHHHHHh---------hhhCCCCcCCCCCCCCEeeecCCCCCC
Q 012641 280 TNICELPIGIKKN---------LKAIPAGMLSSLLSLRVFSWVPTRYAG 319 (459)
Q Consensus 280 ~~l~~lp~~i~~L---------l~~lp~~~i~~L~~L~~L~l~~~~~~~ 319 (459)
|.+..+|.....| +..+|.. +.+|+.|++++|.+..
T Consensus 272 N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 272 NPLTHLPALPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLAS 316 (788)
T ss_pred CchhhhhhchhhcCEEECcCCcccccccc----ccccceeECCCCcccc
Confidence 9888777544333 5556653 3679999999887754
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-11 Score=125.86 Aligned_cols=208 Identities=19% Similarity=0.208 Sum_probs=142.8
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
+...+..+..+|... ..+++.|.+.+| .+..+|..+. ++|+.|++++|.+..+|.. +. ..|++|++++| .+.
T Consensus 204 L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N-~L~ 275 (754)
T PRK15370 204 LILDNNELKSLPENL-QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPER-LP--SALQSLDLFHN-KIS 275 (754)
T ss_pred EEecCCCCCcCChhh-ccCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChh-Hh--CCCCEEECcCC-ccC
Confidence 334445566666433 258999999999 8988864443 5799999999999999887 33 58999999999 999
Q ss_pred cccccccCCCCCCEEEcCCCCCcccCHHH----HHh------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCcc
Q 012641 261 KLHVGEGELIDLQYLNLSNTNICELPIGI----KKN------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT 330 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~l~~lp~~i----~~L------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 330 (459)
.+|..+. .+|++|++++|+++.+|..+ ..| +..+|.. + .++|+.|++.+|.+..
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~----------- 339 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPET-L--PPGLKTLEAGENALTS----------- 339 (754)
T ss_pred ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcc-c--cccceeccccCCcccc-----------
Confidence 9998775 58999999999999887543 333 5566664 3 2578888888887632
Q ss_pred ccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecC
Q 012641 331 VLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINC 410 (459)
Q Consensus 331 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~ 410 (459)
.+..+. ++|+.|+++.+.... ++. .+...|+.|+++.+.+..++ ......|+.|++++|
T Consensus 340 --LP~~l~--~sL~~L~Ls~N~L~~---LP~--~lp~~L~~LdLs~N~Lt~LP------------~~l~~sL~~LdLs~N 398 (754)
T PRK15370 340 --LPASLP--PELQVLDVSKNQITV---LPE--TLPPTITTLDVSRNALTNLP------------ENLPAALQIMQASRN 398 (754)
T ss_pred --CChhhc--CcccEEECCCCCCCc---CCh--hhcCCcCEEECCCCcCCCCC------------HhHHHHHHHHhhccC
Confidence 333332 578888886554332 222 12235677777666554431 122346888888888
Q ss_pred CCCCCcc-----cccCCCcceeecccCc
Q 012641 411 SIKDLTC-----ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 411 ~l~~lp~-----l~~l~~L~~L~l~~c~ 433 (459)
++..+|. .+.++++..|++.+.+
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 7777763 3445778888887744
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-11 Score=111.66 Aligned_cols=94 Identities=26% Similarity=0.309 Sum_probs=57.8
Q ss_pred cceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCC-CCCcccCHHH-HHh-------
Q 012641 223 RLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSN-TNICELPIGI-KKN------- 292 (459)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~-~~l~~lp~~i-~~L------- 292 (459)
....+.++.|.+..+|+..|+.+++||.|||++| .|+.+ |+.+..|.+|..|-+-+ |+|+++|++. +.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3455666666677777776777777777777777 66666 66666666666665555 5666666432 122
Q ss_pred -----hhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 293 -----LKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 293 -----l~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..++.+++..|++|..|.+.+|..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 2333444466677777777766654
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.9e-11 Score=109.94 Aligned_cols=237 Identities=16% Similarity=0.145 Sum_probs=160.9
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccC-C
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQ-N 256 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~-~ 256 (459)
..+.+.+.+++.+|..-. .+...|.+..| .++.+| ..+..+++||.|++++|.++.|.++.|.+++.|-.|-+.+ |
T Consensus 49 ~~VdCr~~GL~eVP~~LP-~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP-PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC-CcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 445667778888875432 56788999999 999998 6678899999999999999999999999999998887776 6
Q ss_pred CCcccccc-cccCCCCCCEEEcCCCCCcccCHH-HHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCC---
Q 012641 257 AKLSKLHV-GEGELIDLQYLNLSNTNICELPIG-IKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAG--- 319 (459)
Q Consensus 257 ~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~--- 319 (459)
+|+.+|+ .++.|..|+.|.+--|.+..++.. +..| ++.++.+.+..+.+++++++..|....
T Consensus 127 -kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 -KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred -chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 9999985 468899999999988888766633 3333 677888668889999998887655211
Q ss_pred --c----------CC-C-----------------------------------CCCCCccccchhhhhccccCceeEEEEe
Q 012641 320 --F----------NY-G-----------------------------------SSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 320 --~----------~~-~-----------------------------------~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
| +. | .+.+. ......-+..|++|++|+++.+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d-~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD-SICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC-CcChHHHHhhcccceEeccCCC
Confidence 0 00 0 00111 1122344667888888888765
Q ss_pred ChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeec
Q 012641 352 TLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFA 429 (459)
Q Consensus 352 ~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l 429 (459)
....+.+-. ......++.|.+.-+.+...+.--+. .++.|+.|+|.+|+++.+.| +..+.+|..|.+
T Consensus 285 ~i~~i~~~a--Fe~~a~l~eL~L~~N~l~~v~~~~f~---------~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 285 KITRIEDGA--FEGAAELQELYLTRNKLEFVSSGMFQ---------GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccchhhhhh--hcchhhhhhhhcCcchHHHHHHHhhh---------ccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 555443211 11223466666655555444322222 36677778888886666654 455666666666
Q ss_pred c
Q 012641 430 K 430 (459)
Q Consensus 430 ~ 430 (459)
-
T Consensus 354 ~ 354 (498)
T KOG4237|consen 354 L 354 (498)
T ss_pred c
Confidence 4
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-11 Score=118.91 Aligned_cols=181 Identities=18% Similarity=0.170 Sum_probs=123.3
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHh---------
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKN--------- 292 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L--------- 292 (459)
.-....+++.|.+..+|.+ ++.|..|..+.|+.| .+..+|..+++|..|.||||+.|++..+|..++.|
T Consensus 75 tdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEec
Confidence 3344556666666666666 666666666666666 66666666666666777777766666666666665
Q ss_pred --hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhh
Q 012641 293 --LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVR 370 (459)
Q Consensus 293 --l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~ 370 (459)
++.+|.+ ++.+..|.+|+.+.|.+ ...+..++.|.+|+.|.+..+....+ +.... .-.|.
T Consensus 153 Nkl~~lp~~-ig~~~tl~~ld~s~nei-------------~slpsql~~l~slr~l~vrRn~l~~l---p~El~-~LpLi 214 (722)
T KOG0532|consen 153 NKLTSLPEE-IGLLPTLAHLDVSKNEI-------------QSLPSQLGYLTSLRDLNVRRNHLEDL---PEELC-SLPLI 214 (722)
T ss_pred CccccCCcc-cccchhHHHhhhhhhhh-------------hhchHHhhhHHHHHHHHHhhhhhhhC---CHHHh-CCcee
Confidence 5667777 88888999999998885 34788899999999988864433322 22111 01256
Q ss_pred hhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc----cccCCCcceeecccC
Q 012641 371 RQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC----ILYIPRLRFLFAKDC 432 (459)
Q Consensus 371 ~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~----l~~l~~L~~L~l~~c 432 (459)
+|+++|+.+..++. . ...+..|++|-|.+|-+++.|. -|...=.++|++.-|
T Consensus 215 ~lDfScNkis~iPv--------~--fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSCNKISYLPV--------D--FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecccCceeecch--------h--hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 67778888766631 1 1347899999999999999884 255556688888777
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-10 Score=97.21 Aligned_cols=128 Identities=26% Similarity=0.270 Sum_probs=47.5
Q ss_pred ccceEEEeecCCCccccCCCCC-CCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccc-cCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPP-CCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i-~~L~~L~~L 275 (459)
...+.|++.++ .+..+ ..+. .+.+|++|++++|.+..++. +..++.|++|++++| .|++++..+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccc-ccccc-cchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 35677888888 77777 4554 57788888888888777765 777888888888888 888776544 357888888
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
++++|.|.++-. +-. +..+++|+.|++.+|.... ....-..-+..+++|+.|+-.
T Consensus 94 ~L~~N~I~~l~~--------l~~--L~~l~~L~~L~L~~NPv~~---------~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNE--------LEP--LSSLPKLRVLSLEGNPVCE---------KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCC--------CGG--GGG-TT--EEE-TT-GGGG---------STTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHH--------hHH--HHcCCCcceeeccCCcccc---------hhhHHHHHHHHcChhheeCCE
Confidence 888887766532 111 6677888888888877632 012233455567777777654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-09 Score=94.75 Aligned_cols=115 Identities=28% Similarity=0.300 Sum_probs=41.5
Q ss_pred CccccCCCCCCCCcceeeeeecccccccchhHHh-cCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHH
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQ-SMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIG 288 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~ 288 (459)
.+... +...++.+++.|++.+|.+..+.. ++ .+.+|++|++++| .|++++. +..+++|++|++++|.|+.++.+
T Consensus 8 ~i~~~-~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 8 MIEQI-AQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS---S--TT-----TT--EEE--SS---S-CHH
T ss_pred ccccc-cccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCCCCCccccc
Confidence 34444 555666788999999998887754 55 6889999999999 9999964 88899999999999999988754
Q ss_pred HHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 289 IKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 289 i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
+ ...+++|++|++++|.+.. ...+..+..+++|+.|++..+
T Consensus 83 l-----------~~~lp~L~~L~L~~N~I~~-----------l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 83 L-----------DKNLPNLQELYLSNNKISD-----------LNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp H-----------HHH-TT--EEE-TTS---S-----------CCCCGGGGG-TT--EEE-TT-
T ss_pred h-----------HHhCCcCCEEECcCCcCCC-----------hHHhHHHHcCCCcceeeccCC
Confidence 3 2357899999999998742 334678888999999988643
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.6e-10 Score=118.49 Aligned_cols=104 Identities=23% Similarity=0.232 Sum_probs=79.3
Q ss_pred CccccccccccccceEEEeecCCC-ccccC-CCCCCCCcceeeeeecc-cccccchhHHhcCCCccEEEccCCCCccccc
Q 012641 187 KSIKVQETASWNEAVRVSLWRSPS-IDSLS-PTPPCCPRLLTLLVRYT-MIKEFENKFFQSMHALRVLDSSQNAKLSKLH 263 (459)
Q Consensus 187 ~~~~~~~~~~~~~~r~l~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP 263 (459)
.....+......+++.|-+..+.. +..++ ..+..++.|++|++++| .+..+|.+ ++.+-+||||+++++ .+..+|
T Consensus 534 ~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP 611 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLP 611 (889)
T ss_pred chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-Cccccc
Confidence 333333333345688888888721 55554 33778999999999988 67789888 999999999999999 999999
Q ss_pred ccccCCCCCCEEEcCCCC-CcccCHHHHHh
Q 012641 264 VGEGELIDLQYLNLSNTN-ICELPIGIKKN 292 (459)
Q Consensus 264 ~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L 292 (459)
.++++|+.|.|||+..+. +..+|.....|
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhc
Confidence 999999999999999884 44444444434
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-10 Score=112.50 Aligned_cols=132 Identities=23% Similarity=0.276 Sum_probs=88.7
Q ss_pred ceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCC
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSN 279 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~ 279 (459)
+..+.+..| .+..+|..+.++..|.+|+++.|.+..+|.. ++. --|++|.+++| +++.+|..|+.+.+|..||.+.
T Consensus 100 Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~-lpLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 100 LESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCD-LPLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChh-hhc-CcceeEEEecC-ccccCCcccccchhHHHhhhhh
Confidence 444556666 6666666677777777777777777667665 333 34777777777 7777777777777777777777
Q ss_pred CCCcccCHHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 280 TNICELPIGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 280 ~~l~~lp~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
|.+..+|+.++.| +..+|+. +.. -.|..||++.|++. ..|-.+.+|++|++|.
T Consensus 176 nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~-LpLi~lDfScNkis-------------~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 176 NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCS-LPLIRLDFSCNKIS-------------YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhC-CceeeeecccCcee-------------ecchhhhhhhhheeee
Confidence 7777777776665 5566666 553 35667777766643 2566777777777777
Q ss_pred EEE
Q 012641 348 VII 350 (459)
Q Consensus 348 l~~ 350 (459)
+..
T Consensus 241 Len 243 (722)
T KOG0532|consen 241 LEN 243 (722)
T ss_pred ecc
Confidence 653
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.6e-09 Score=99.77 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=31.6
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCC---ccEEEccCCCCcc-----cccccccCC-CCCCEEEcCCCCCc
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHA---LRVLDSSQNAKLS-----KLHVGEGEL-IDLQYLNLSNTNIC 283 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---Lr~L~L~~~~~i~-----~lP~~i~~L-~~L~~L~l~~~~l~ 283 (459)
..+++|+.|++++|.+.......+..+.. |+.|++++| .+. .+...+..+ ++|+.|++++|.+.
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 34556666666655444222222333333 666666655 443 122334444 55666666666554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-08 Score=72.49 Aligned_cols=60 Identities=32% Similarity=0.469 Sum_probs=46.3
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcCCCCC
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNI 282 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~l 282 (459)
++|++|++.+|.+..+|++.|.++++|++|++++| .++.+| ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46778888888788888777888888888888888 777775 4567788888888887764
|
... |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.3e-09 Score=98.82 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=126.1
Q ss_pred cccceEEEeecCCCccccC--CCCCCCCcceeeeeecccccc--cchhHHhcCCCccEEEccCCCCccccccc--ccCCC
Q 012641 197 WNEAVRVSLWRSPSIDSLS--PTPPCCPRLLTLLVRYTMIKE--FENKFFQSMHALRVLDSSQNAKLSKLHVG--EGELI 270 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~--i~~L~ 270 (459)
.+++|.+++.+. .+...+ .....|++++.|+++.|-+.. .-..+...+++|+.|+|+.| .+.....+ -..+.
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhh
Confidence 467888999888 776664 356789999999999994432 22344778999999999999 66544332 24678
Q ss_pred CCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEE
Q 012641 271 DLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 271 ~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
+|+.|.+++|.+. ...+..++ ...++|..|++.+|.. .......-.-++.|+.|+++.
T Consensus 198 ~lK~L~l~~CGls--~k~V~~~~--------~~fPsl~~L~L~~N~~------------~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS--WKDVQWIL--------LTFPSLEVLYLEANEI------------ILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred hhheEEeccCCCC--HHHHHHHH--------HhCCcHHHhhhhcccc------------cceecchhhhhhHHhhccccC
Confidence 9999999999887 55555533 3445677777777742 111222333466677777765
Q ss_pred eChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCC---CCCCcccccCCCccee
Q 012641 351 LTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCS---IKDLTCILYIPRLRFL 427 (459)
Q Consensus 351 ~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~---l~~lp~l~~l~~L~~L 427 (459)
+..-.+........ ...|+.|.+..+++.++...+.+.... ...+++|++|++..|+ +.++-.+..+++|+.|
T Consensus 256 N~li~~~~~~~~~~-l~~L~~Lnls~tgi~si~~~d~~s~~k---t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGT-LPGLNQLNLSSTGIASIAEPDVESLDK---THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred Cccccccccccccc-ccchhhhhccccCcchhcCCCccchhh---hcccccceeeecccCccccccccchhhccchhhhh
Confidence 43333222222111 122444555445554443322221100 1358899999999994 4444445567777777
Q ss_pred ecc
Q 012641 428 FAK 430 (459)
Q Consensus 428 ~l~ 430 (459)
.+.
T Consensus 332 ~~~ 334 (505)
T KOG3207|consen 332 RIT 334 (505)
T ss_pred hcc
Confidence 654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-08 Score=99.41 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=26.4
Q ss_pred cccCccEEEEecCCCCCCcccccCCCcceeeccc
Q 012641 398 FSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKD 431 (459)
Q Consensus 398 ~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~ 431 (459)
.+++++.|++++|.+.+++.++.+.+|+.|++++
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 253 NLSNLETLDLSNNQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred cccccceeccccccccccccccccCccCEEeccC
Confidence 3667888888888777777777788888888877
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-08 Score=98.22 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=86.5
Q ss_pred ccceEEEeecCCCcc-----ccCCCCCCCCcceeeeeecccccccc------hhHHhcCCCccEEEccCCCCcc-ccccc
Q 012641 198 NEAVRVSLWRSPSID-----SLSPTPPCCPRLLTLLVRYTMIKEFE------NKFFQSMHALRVLDSSQNAKLS-KLHVG 265 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~l~~Lr~L~L~~~~~i~-~lP~~ 265 (459)
..++.+.+.++ .+. .++..+...++++.|.++++.+...+ ...+..+++|+.|++++| .+. ..+..
T Consensus 23 ~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGCGV 100 (319)
T ss_pred hhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHHHH
Confidence 34777777777 552 23345566778899998887554211 233777899999999999 665 34555
Q ss_pred ccCCCC---CCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCC-CCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccc
Q 012641 266 EGELID---LQYLNLSNTNICELPIGIKKNLKAIPAGMLSSL-LSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK 341 (459)
Q Consensus 266 i~~L~~---L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 341 (459)
+..+.+ |++|++++|.+..- .... +... +..+ ++|+.|++.+|.+.. .........+..++
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~--~~~~----l~~~-l~~~~~~L~~L~L~~n~l~~--------~~~~~~~~~~~~~~ 165 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDR--GLRL----LAKG-LKDLPPALEKLVLGRNRLEG--------ASCEALAKALRANR 165 (319)
T ss_pred HHHHhccCcccEEEeeCCccchH--HHHH----HHHH-HHhCCCCceEEEcCCCcCCc--------hHHHHHHHHHHhCC
Confidence 555555 99999999987631 1111 1112 4445 788888888887631 00112344566667
Q ss_pred cCceeEEEEeC
Q 012641 342 HLQEISVIILT 352 (459)
Q Consensus 342 ~L~~L~l~~~~ 352 (459)
+|+.|++..+.
T Consensus 166 ~L~~L~l~~n~ 176 (319)
T cd00116 166 DLKELNLANNG 176 (319)
T ss_pred CcCEEECcCCC
Confidence 78888776543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-08 Score=91.06 Aligned_cols=132 Identities=19% Similarity=0.217 Sum_probs=79.7
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPA 298 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~ 298 (459)
..+..|.++++++|.+..+.++ +.-.+.+|+|++++| .+..+-. +..|.+|+.||+|+|.+.++-..
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gw---------- 347 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGW---------- 347 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhh----------
Confidence 3456677788888877777776 777788888888888 7766543 77777888888888876655322
Q ss_pred CcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC
Q 012641 299 GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE 378 (459)
Q Consensus 299 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~ 378 (459)
-.+|-|.++|.+.+|.+. ....+++|-+|..|+++.+....+.+.....+ ..||+.+.+-.+.
T Consensus 348 --h~KLGNIKtL~La~N~iE--------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 --HLKLGNIKTLKLAQNKIE--------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNP 410 (490)
T ss_pred --HhhhcCEeeeehhhhhHh--------------hhhhhHhhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCC
Confidence 234455566666655431 34455555556666665554444443332222 2345555554444
Q ss_pred CC
Q 012641 379 LS 380 (459)
Q Consensus 379 l~ 380 (459)
+.
T Consensus 411 l~ 412 (490)
T KOG1259|consen 411 LA 412 (490)
T ss_pred cc
Confidence 43
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-07 Score=65.93 Aligned_cols=59 Identities=32% Similarity=0.427 Sum_probs=52.4
Q ss_pred CCccEEEccCCCCccccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 246 HALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
++|++|++++| .++.+| ..+..+++|++|++++|.++.+|.+ .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-----------~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-----------AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETT-----------TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHH-----------HHcCCCCCCEEeCcCCc
Confidence 47999999999 999997 4678999999999999999887653 38999999999999986
|
... |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-07 Score=90.31 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=129.6
Q ss_pred CCCCCCCcceeeeeecccccccch-hHHhcCCCccEEEccCCCCccc---ccccccCCCCCCEEEcCCCCCcccCHHHHH
Q 012641 216 PTPPCCPRLLTLLVRYTMIKEFEN-KFFQSMHALRVLDSSQNAKLSK---LHVGEGELIDLQYLNLSNTNICELPIGIKK 291 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~i~~---lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~ 291 (459)
..-+++.+|+...++++.+...+. +....|+++|.|||+.| -+.. +-+-+..|++|+.|+++.|.+....++..
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~- 192 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT- 192 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccc-
Confidence 445678899999999987766663 44788999999999998 5553 23445789999999999998764432210
Q ss_pred hhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhh
Q 012641 292 NLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRR 371 (459)
Q Consensus 292 Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~ 371 (459)
-..+.+|+.|.++.|++++ .....-+...++|..|.+..++ .+..-....+....|+.
T Consensus 193 ---------~~~l~~lK~L~l~~CGls~-----------k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 193 ---------TLLLSHLKQLVLNSCGLSW-----------KDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQE 250 (505)
T ss_pred ---------hhhhhhhheEEeccCCCCH-----------HHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhh
Confidence 2357789999999998842 2233444567888888887553 22112223345556788
Q ss_pred hhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCc--c------cccCCCcceeecccCcchhhhcc
Q 012641 372 QVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLT--C------ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 372 L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp--~------l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
|+++.+.+-.+..... ...|+.|+.|+++.|.+.++- . ...+|+|++|++.. +++.+++.
T Consensus 251 LdLs~N~li~~~~~~~--------~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~s 318 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYK--------VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRS 318 (505)
T ss_pred ccccCCcccccccccc--------cccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccc
Confidence 8887666655432222 145888999999988555442 2 25588999999987 55555444
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-07 Score=84.76 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=87.5
Q ss_pred CCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCC
Q 012641 246 HALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSS 325 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 325 (459)
+.|..+||++| .|+.+-.++.-++.++.|++|+|.|..+-. +..|.+|++|++++|...+
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-------------La~L~~L~~LDLS~N~Ls~------ 343 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-------------LAELPQLQLLDLSGNLLAE------ 343 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-------------hhhcccceEeecccchhHh------
Confidence 67888899999 888888888888899999999998876532 6778889999999887642
Q ss_pred CCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEE
Q 012641 326 VPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDL 405 (459)
Q Consensus 326 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L 405 (459)
...-- .+|-|.+.|.+. .+.++.+....++- +|..|++..+.++.++.++- .+.+|+|+.+
T Consensus 344 ----~~Gwh---~KLGNIKtL~La---~N~iE~LSGL~KLY-SLvnLDl~~N~Ie~ldeV~~--------IG~LPCLE~l 404 (490)
T KOG1259|consen 344 ----CVGWH---LKLGNIKTLKLA---QNKIETLSGLRKLY-SLVNLDLSSNQIEELDEVNH--------IGNLPCLETL 404 (490)
T ss_pred ----hhhhH---hhhcCEeeeehh---hhhHhhhhhhHhhh-hheeccccccchhhHHHhcc--------cccccHHHHH
Confidence 11112 245556666664 33444443333332 36666666666665543211 2458888888
Q ss_pred EEecCCCCCCc
Q 012641 406 SIINCSIKDLT 416 (459)
Q Consensus 406 ~L~~~~l~~lp 416 (459)
.|.+|.+..+|
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 88888555554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.7e-07 Score=58.06 Aligned_cols=41 Identities=34% Similarity=0.435 Sum_probs=33.5
Q ss_pred CCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCH
Q 012641 246 HALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPI 287 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~ 287 (459)
++|++|++++| .|+.+|..+++|++|++|++++|+++++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46889999999 999998889999999999999998887753
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-06 Score=90.11 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=51.6
Q ss_pred ceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCCEEEcCCCCCc-ccCHHHHHhhhhCCCCc
Q 012641 224 LLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQYLNLSNTNIC-ELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 224 L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~~L~l~~~~l~-~lp~~i~~Ll~~lp~~~ 300 (459)
++.|++.+|.+. .+|.. ++.+++|+.|+|++| .+. .+|..++.+.+|++|+|++|.+. .+|..
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~------------ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES------------ 485 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchH------------
Confidence 566666666554 34444 667777777777777 554 56666777777777777777665 33432
Q ss_pred CCCCCCCCEeeecCCCC
Q 012641 301 LSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~ 317 (459)
+++|++|++|++++|.+
T Consensus 486 l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 486 LGQLTSLRILNLNGNSL 502 (623)
T ss_pred HhcCCCCCEEECcCCcc
Confidence 66667777777776665
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.2e-07 Score=92.13 Aligned_cols=123 Identities=28% Similarity=0.277 Sum_probs=80.9
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcC
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 278 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~ 278 (459)
.+..+.++.+ .+..+......+.+|+.|++.+|.+..+... +..+.+|++|++++| .|+++.. +..+..|+.|+++
T Consensus 73 ~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc-hhhccchhhheec
Confidence 3444445555 5554324466677788888888877766654 667788888888888 7777754 6677778888888
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh--hhccccCceeEEEEeC
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE--LESLKHLQEISVIILT 352 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~l~~~~ 352 (459)
+|.|..++. +..+++|+.+++.+|.+.. ++. +..+.+|+.+.+..+.
T Consensus 149 ~N~i~~~~~-------------~~~l~~L~~l~l~~n~i~~--------------ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 149 GNLISDISG-------------LESLKSLKLLDLSYNRIVD--------------IENDELSELISLEELDLGGNS 197 (414)
T ss_pred cCcchhccC-------------CccchhhhcccCCcchhhh--------------hhhhhhhhccchHHHhccCCc
Confidence 887776653 6667778888887776521 222 4566666666665443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-06 Score=87.55 Aligned_cols=88 Identities=25% Similarity=0.290 Sum_probs=66.3
Q ss_pred ccceEEEeecCCCccccCCCCCCCC-cceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCP-RLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
+.+..+.+..+ .+.++++...... +|+.|++.+|.+..+|.. +..++.|+.|++++| .+..+|...+.+..|+.|+
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 46777777777 7777765555553 788888888877777644 777888888888888 8888877777778888888
Q ss_pred cCCCCCcccCHH
Q 012641 277 LSNTNICELPIG 288 (459)
Q Consensus 277 l~~~~l~~lp~~ 288 (459)
+++|.+..+|..
T Consensus 193 ls~N~i~~l~~~ 204 (394)
T COG4886 193 LSGNKISDLPPE 204 (394)
T ss_pred ccCCccccCchh
Confidence 888887777765
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.6e-06 Score=87.89 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=85.2
Q ss_pred cceEEEeecCCCcc-ccCCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCCEE
Q 012641 199 EAVRVSLWRSPSID-SLSPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQYL 275 (459)
Q Consensus 199 ~~r~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~~L 275 (459)
.++.|.+.++ .+. .+|..+..+++|+.|++++|.+. .+|.. ++.+++|++|+|++| .+. .+|..++.|++|++|
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEE
Confidence 3677888888 554 57777889999999999999886 66666 999999999999999 776 789999999999999
Q ss_pred EcCCCCCc-ccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 276 NLSNTNIC-ELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 276 ~l~~~~l~-~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
++++|.+. .+|..++. .+.++..+++.+|..
T Consensus 496 ~Ls~N~l~g~iP~~l~~-----------~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 496 NLNGNSLSGRVPAALGG-----------RLLHRASFNFTDNAG 527 (623)
T ss_pred ECcCCcccccCChHHhh-----------ccccCceEEecCCcc
Confidence 99999877 67765422 134567788877754
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-06 Score=87.88 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=89.0
Q ss_pred cccccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCC
Q 012641 195 ASWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQ 273 (459)
Q Consensus 195 ~~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~ 273 (459)
...+++..+.+.++ .+..+ .. +..+++|++|++++|.+..+.. +..+..|+.|++.+| .|..++. +..+..|+
T Consensus 92 ~~~~~l~~l~l~~n-~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDISG-LESLKSLK 165 (414)
T ss_pred ccccceeeeecccc-chhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhccC-Cccchhhh
Confidence 34478899999999 99998 55 8889999999999999988877 888999999999999 9988765 66699999
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.+++++|.+..++.. . ...+.+|+.+++.+|.+
T Consensus 166 ~l~l~~n~i~~ie~~----------~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEND----------E-LSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhhhhhhh----------h-hhhccchHHHhccCCch
Confidence 999999998877541 0 25678888888888765
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-06 Score=69.93 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=78.1
Q ss_pred ccceEEEeecCCCccccCCCC-CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTP-PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
.++..+++++| .++++|+.+ ..++.+++|++.+|.+..+|.+ +..|+.||-|+++.| .+...|.-|..|++|-+|+
T Consensus 53 ~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence 36778899999 999998555 4567899999999999999999 999999999999999 9999999999999999999
Q ss_pred cCCCCCcccCHH
Q 012641 277 LSNTNICELPIG 288 (459)
Q Consensus 277 l~~~~l~~lp~~ 288 (459)
..+|.+.++|-.
T Consensus 130 s~~na~~eid~d 141 (177)
T KOG4579|consen 130 SPENARAEIDVD 141 (177)
T ss_pred CCCCccccCcHH
Confidence 999998888865
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.6e-05 Score=83.98 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=48.4
Q ss_pred cCCCccEEEccCCCCcc--cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcC
Q 012641 244 SMHALRVLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFN 321 (459)
Q Consensus 244 ~l~~Lr~L~L~~~~~i~--~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 321 (459)
-|+.|+.|.+++- .+. .+-.-..++++|+.||+|+|+++.+. + +++|++|++|.+.+-.+.
T Consensus 146 ~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~------------G-IS~LknLq~L~mrnLe~e--- 208 (699)
T KOG3665|consen 146 MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNLS------------G-ISRLKNLQVLSMRNLEFE--- 208 (699)
T ss_pred hCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCcH------------H-HhccccHHHHhccCCCCC---
Confidence 4566666666553 221 11122345666777777777766652 2 677777777777665442
Q ss_pred CCCCCCCccccchhhhhccccCceeEEEE
Q 012641 322 YGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
....+.+|-+|++|+.|+++.
T Consensus 209 --------~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 209 --------SYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred --------chhhHHHHhcccCCCeeeccc
Confidence 234566777777777777764
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.6e-07 Score=91.80 Aligned_cols=128 Identities=23% Similarity=0.175 Sum_probs=91.8
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
.|..+..+++..| .+..+...+.-++.|+.|++++|.+.... ++..+.+|+.|||++| .+..+|.--.---+|+.|
T Consensus 162 ~Wn~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheee
Confidence 3556666777777 66555344455678888888888777765 3888888888888888 888887521111248888
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
++++|.+++|- + |.+|++|+.|++++|-+. ...-+.-|+.|..|+.|.+..+
T Consensus 238 ~lrnN~l~tL~------------g-ie~LksL~~LDlsyNll~-----------~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 238 NLRNNALTTLR------------G-IENLKSLYGLDLSYNLLS-----------EHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred eecccHHHhhh------------h-HHhhhhhhccchhHhhhh-----------cchhhhHHHHHHHHHHHhhcCC
Confidence 88888877763 2 888999999999988764 2334566777888888887643
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.8e-05 Score=50.85 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=34.9
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV 264 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~ 264 (459)
++|++|++++|.+..+|+. ++.|++|++|++++| .++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCcC
Confidence 4789999999999999987 899999999999999 8887764
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.9e-05 Score=75.81 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=75.3
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecc-cccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYT-MIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
+.+.++|.++.+ .+..+| .+ .++|++|.+.+| .+..+|.. + ..+|++|++++|..+..+|. +|++|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-VL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-CC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceE
Confidence 467889999998 888884 22 246999999887 66677754 3 25899999999877888886 46677
Q ss_pred EcCCCC---CcccCHHHHHh-hhh----CCCCcCC-CC-CCCCEeeecCCCC
Q 012641 276 NLSNTN---ICELPIGIKKN-LKA----IPAGMLS-SL-LSLRVFSWVPTRY 317 (459)
Q Consensus 276 ~l~~~~---l~~lp~~i~~L-l~~----lp~~~i~-~L-~~L~~L~l~~~~~ 317 (459)
+++++. +..+|.++..| +.. .+.. +. .| .+|++|.+.+|..
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~-lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQAR-IDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccc-cccccCCcccEEEecCCCc
Confidence 777654 67889888876 210 1111 11 12 4789999988775
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.4e-06 Score=82.94 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=93.9
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCc
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~ 300 (459)
.-.|.+.++++|.+..++.+ +.-+++|+.|||++| ++.+.- .+-.+.+|++|||++|.+..+|. +-
T Consensus 163 Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~--------l~--- 228 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQ--------LS--- 228 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccc--------cc---
Confidence 34577777778888777776 888999999999999 888775 68889999999999999887764 11
Q ss_pred CCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC
Q 012641 301 LSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE 378 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~ 378 (459)
...+ +|+.|.+.+|... .+.++.+|++|+.|+++.+-.....++.....+ ..|+.|.+..+.
T Consensus 229 ~~gc-~L~~L~lrnN~l~--------------tL~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 229 MVGC-KLQLLNLRNNALT--------------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNP 290 (1096)
T ss_pred hhhh-hheeeeecccHHH--------------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCc
Confidence 1222 4999999988653 567888999999999986655555444443332 346777774444
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=2e-05 Score=72.25 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=28.1
Q ss_pred cccCccEEEEecC---CCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 398 FSQNLQDLSIINC---SIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 398 ~l~~L~~L~L~~~---~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.++.+..|+|..+ .|.++..+..+|.|..|.+.+.+-...+-.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 4666667777777 444555677788888888877655544433
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00043 Score=67.82 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=38.2
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCC-CCcccC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT-NICELP 286 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~-~l~~lp 286 (459)
..+.+++.|++++|.+..+|. + -.+|+.|.+++|..++.+|..+. .+|++|++++| .+..+|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 345667777777776666662 2 23577777776656666665442 46777777776 454444
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00019 Score=62.41 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=65.0
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc--ccccCCCCCCEEE
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH--VGEGELIDLQYLN 276 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP--~~i~~L~~L~~L~ 276 (459)
....+.+.+| .+..+ ..+..++.|.+|.+.+|.+..+.+..-..+++|.+|.|.+| .|..+- ..+..++.|++|.
T Consensus 43 ~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 3444566666 66666 66677777777777777777777664455566777777777 666552 2234456677777
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
+-+|+++.... -...++.++++|++|++.+..
T Consensus 120 ll~Npv~~k~~--------YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKN--------YRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccC--------ceeEEEEecCcceEeehhhhh
Confidence 77776554321 111236666777777766543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00029 Score=61.30 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=83.5
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccC-CCCCCEEEcCCCCCcccCHHHHHhhhhCCCC
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGE-LIDLQYLNLSNTNICELPIGIKKNLKAIPAG 299 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~-L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~ 299 (459)
..+...+++.+|.+..++. |.++..|.+|.|++| .|+.+-..++. +++|..|.+.+|+|.++-+ +-+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d--------l~p- 108 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGD--------LDP- 108 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhh--------cch-
Confidence 3466789999998888876 899999999999999 99999555654 6689999999999887632 333
Q ss_pred cCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEE
Q 012641 300 MLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 300 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
+..+++|+.|.+-+|.... ....-.--+..+++|+.|+...
T Consensus 109 -La~~p~L~~Ltll~Npv~~---------k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 109 -LASCPKLEYLTLLGNPVEH---------KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -hccCCccceeeecCCchhc---------ccCceeEEEEecCcceEeehhh
Confidence 6778899999999987632 1223344567789999998864
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00024 Score=66.68 Aligned_cols=194 Identities=15% Similarity=0.112 Sum_probs=115.6
Q ss_pred CCCCCCCcceeeeeeccccc--ccc--hhHHhcCCCccEEEccCCCCcccc--------------cccccCCCCCCEEEc
Q 012641 216 PTPPCCPRLLTLLVRYTMIK--EFE--NKFFQSMHALRVLDSSQNAKLSKL--------------HVGEGELIDLQYLNL 277 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~--~~~--~~~~~~l~~Lr~L~L~~~~~i~~l--------------P~~i~~L~~L~~L~l 277 (459)
+.+..+++|++|+|+.|.+. .++ .+++.++..|+.|.|.+| .+... -+.++.-..||++..
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 45567789999999998443 222 344778889999999998 66532 234566788999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhh
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLN 357 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 357 (459)
..|.+..-+..- +-.. +...+.|+.+.+..|.+.. .+ .......+..+++|+.|++..+-...-.
T Consensus 165 ~rNrlen~ga~~------~A~~-~~~~~~leevr~~qN~I~~-------eG-~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 165 GRNRLENGGATA------LAEA-FQSHPTLEEVRLSQNGIRP-------EG-VTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred eccccccccHHH------HHHH-HHhccccceEEEecccccC-------ch-hHHHHHHHHhCCcceeeecccchhhhHH
Confidence 999887665421 1111 5555788888888887632 01 1234578889999999999754322111
Q ss_pred h--hhcchhHHhhhhhhhccCCCCCCccccCccccCCc--cC---cccccCccEEEEecCCCCC-----Cc-ccccCCCc
Q 012641 358 K--LKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTM--MK---GHFSQNLQDLSIINCSIKD-----LT-CILYIPRL 424 (459)
Q Consensus 358 ~--l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~--i~---~~~l~~L~~L~L~~~~l~~-----lp-~l~~l~~L 424 (459)
. +.....-.++|+.+.++. ..++.. +. +. ....|+|+.|.+.+|..+. +. ++...|.|
T Consensus 230 s~~LakaL~s~~~L~El~l~d--------cll~~~-Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGD--------CLLENE-GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred HHHHHHHhcccchheeecccc--------cccccc-cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 1 111111111233332211 111110 00 00 1347899999999993332 11 35668999
Q ss_pred ceeecccCcc
Q 012641 425 RFLFAKDCPS 434 (459)
Q Consensus 425 ~~L~l~~c~~ 434 (459)
..|+|++|.-
T Consensus 301 ~kLnLngN~l 310 (382)
T KOG1909|consen 301 EKLNLNGNRL 310 (382)
T ss_pred HHhcCCcccc
Confidence 9999998653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=2.2e-05 Score=72.01 Aligned_cols=166 Identities=20% Similarity=0.143 Sum_probs=92.8
Q ss_pred CCccEEEccCCCCcc--cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCC
Q 012641 246 HALRVLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYG 323 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~--~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 323 (459)
..|++|||+.. .|+ ++-.-+....+|+.|.+.|+.+.+= |. .. |.+-.+|+.|+++.|....
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~---I~-------~~-iAkN~~L~~lnlsm~sG~t---- 248 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDP---IV-------NT-IAKNSNLVRLNLSMCSGFT---- 248 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcH---HH-------HH-Hhccccceeeccccccccc----
Confidence 46899999988 665 3334456677888888888876521 11 12 6677899999999886422
Q ss_pred CCCCCccccchhhhhccccCceeEEEEeChhh--hhhhhcchhHHhhhhhhhc-----------------cCCCCCCccc
Q 012641 324 SSVPGVTVLLLEELESLKHLQEISVIILTLDS--LNKLKSSSKLQSCVRRQVM-----------------GLPELSSLID 384 (459)
Q Consensus 324 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~--~~~l~~~~~l~~~L~~L~l-----------------~~~~l~~l~~ 384 (459)
....---+.+++.|+.|+++|+.... +..+. ......+..|.+ .|..+.+|+.
T Consensus 249 ------~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V--~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 249 ------ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV--AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred ------hhHHHHHHHhhhhHhhcCchHhhccchhhhHHH--hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 23334456789999999998864331 11110 011112222222 2333332221
Q ss_pred cCcccc-CCccC-cccccCccEEEEecC-CCC--CCcccccCCCcceeecccCcch
Q 012641 385 ISSSSL-TTMMK-GHFSQNLQDLSIINC-SIK--DLTCILYIPRLRFLFAKDCPSL 435 (459)
Q Consensus 385 ~~l~~~-~~~i~-~~~l~~L~~L~L~~~-~l~--~lp~l~~l~~L~~L~l~~c~~l 435 (459)
.+.... ++.+. ...|+.|++|.++.| .+. .+-.+...|.|.+|++.||-.=
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 111100 11111 134778888888877 321 1113567788888888876543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00011 Score=68.83 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=22.8
Q ss_pred cccCccEEEEecCCCCCCc------c-cccCCCcceeecccC
Q 012641 398 FSQNLQDLSIINCSIKDLT------C-ILYIPRLRFLFAKDC 432 (459)
Q Consensus 398 ~l~~L~~L~L~~~~l~~lp------~-l~~l~~L~~L~l~~c 432 (459)
.+++|+.|++++|.++.=- . -...|+|++|.+.+|
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 3567888888888555421 1 234788888888773
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=2.2e-05 Score=71.94 Aligned_cols=190 Identities=16% Similarity=0.121 Sum_probs=95.2
Q ss_pred cceEEEeecCCCcccc--CCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCccccc--ccccCCCCCC
Q 012641 199 EAVRVSLWRSPSIDSL--SPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLSKLH--VGEGELIDLQ 273 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~lP--~~i~~L~~L~ 273 (459)
.++++.+++. .++.- -..+++|++|+.|.+.++.+. .+... +..-.+|+.|+++.++.+++.- --+..+..|.
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3566666655 44421 133456777777777776543 23223 5556677777777776665432 1235566777
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh-hccccCceeEEEEeC
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL-ESLKHLQEISVIILT 352 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~l~~~~ 352 (459)
.|+++.|.+.. |. +.-.+.++. .+|..|+++|+...= ....+..| ..+++|..|+++.+.
T Consensus 264 ~LNlsWc~l~~-~~-Vtv~V~his-------e~l~~LNlsG~rrnl----------~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 264 ELNLSWCFLFT-EK-VTVAVAHIS-------ETLTQLNLSGYRRNL----------QKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hcCchHhhccc-hh-hhHHHhhhc-------hhhhhhhhhhhHhhh----------hhhHHHHHHHhCCceeeecccccc
Confidence 77777765431 00 111122222 155666666654210 11122222 246777777776421
Q ss_pred h---hhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCc-----cCcccccCccEEEEecC-CCCCCcc-cccCC
Q 012641 353 L---DSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTM-----MKGHFSQNLQDLSIINC-SIKDLTC-ILYIP 422 (459)
Q Consensus 353 ~---~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~-----i~~~~l~~L~~L~L~~~-~l~~lp~-l~~l~ 422 (459)
. .-+.++ ..+..|+.+++..+-.. +.....|.|.+|++-+| .-+.+.. ...+|
T Consensus 325 ~l~~~~~~~~-----------------~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~ 387 (419)
T KOG2120|consen 325 MLKNDCFQEF-----------------FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLS 387 (419)
T ss_pred ccCchHHHHH-----------------HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCc
Confidence 1 111111 11222222333332111 12245789999999999 5555543 45577
Q ss_pred Ccce
Q 012641 423 RLRF 426 (459)
Q Consensus 423 ~L~~ 426 (459)
+|+.
T Consensus 388 ~lki 391 (419)
T KOG2120|consen 388 HLKI 391 (419)
T ss_pred cccc
Confidence 7764
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00022 Score=65.61 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=52.8
Q ss_pred CCCCcceeeeeecccccccch--hHHhcCCCccEEEccCCCCcccccccc-cCCCCCCEEEcCCCCCc--ccCHHHHHhh
Q 012641 219 PCCPRLLTLLVRYTMIKEFEN--KFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNTNIC--ELPIGIKKNL 293 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~i~~lP~~i-~~L~~L~~L~l~~~~l~--~lp~~i~~Ll 293 (459)
..++.++.+++.+|.+....+ .+..+|++|++|+++.| .+.+--++. -.+++|++|-|.|+.+. ...+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~----- 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS----- 141 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhh-----
Confidence 446778888888886543322 33667888888888888 444321222 24568888888887543 22221
Q ss_pred hhCCCCcCCCCCCCCEeeecCCCC
Q 012641 294 KAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 294 ~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..++.+++|+++.|++
T Consensus 142 -------l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 142 -------LDDLPKVTELHMSDNSL 158 (418)
T ss_pred -------hhcchhhhhhhhccchh
Confidence 55566666666666643
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00016 Score=58.96 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=75.0
Q ss_pred CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhC
Q 012641 217 TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAI 296 (459)
Q Consensus 217 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~l 296 (459)
.......|....+++|.++.+|+.+...++.+..|+|.+| .+..+|.++..++.|+.|+++.|++...|.-
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~v-------- 118 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRV-------- 118 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHH--------
Confidence 3455667888999999999999998888889999999999 9999999999999999999999999988875
Q ss_pred CCCcCCCCCCCCEeeecCCCC
Q 012641 297 PAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 297 p~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..|.+|-.|+..++..
T Consensus 119 ----i~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 119 ----IAPLIKLDMLDSPENAR 135 (177)
T ss_pred ----HHHHHhHHHhcCCCCcc
Confidence 34466777777666654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00064 Score=71.97 Aligned_cols=137 Identities=20% Similarity=0.152 Sum_probs=79.5
Q ss_pred ccceEEEeecCCCcccc-C-CCCCCCCcceeeeeeccccccc-chhHHhcCCCccEEEccCCCCcccccccccCCCCCCE
Q 012641 198 NEAVRVSLWRSPSIDSL-S-PTPPCCPRLLTLLVRYTMIKEF-ENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQY 274 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~ 274 (459)
.++++|.+.+...+..- + .....+|.|++|.+.+-.+..- -.....++++|+.||++++ +++.+ ..|++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 45666666554222110 0 1123478888888877543211 1223567888888888888 88877 66888888888
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
|.+.+=.+..-+. +. + +-+|++|++||++.......+ .-...-.+--..|++||.|+++..+
T Consensus 200 L~mrnLe~e~~~~-l~--------~-LF~L~~L~vLDIS~~~~~~~~------~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQD-LI--------D-LFNLKKLRVLDISRDKNNDDT------KIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhh-HH--------H-HhcccCCCeeeccccccccch------HHHHHHHHhcccCccccEEecCCcc
Confidence 8887755543221 11 1 677888888888876542200 0000011122247788888887543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=7.2e-05 Score=68.05 Aligned_cols=83 Identities=24% Similarity=0.159 Sum_probs=61.6
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCc
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~ 300 (459)
+.+.+.|++.+|.+..|.- ...|+.|+||.|+-| +|++|-. +...++|+.|+|+.|.|..+-+ +.-
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldE-L~Y--------- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDE-LEY--------- 83 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHH-HHH---------
Confidence 4556677777777666643 778889999999988 8888743 7778888888998888776532 222
Q ss_pred CCCCCCCCEeeecCCCC
Q 012641 301 LSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~ 317 (459)
+.+|++|+.|.+..|.-
T Consensus 84 LknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPC 100 (388)
T ss_pred HhcCchhhhHhhccCCc
Confidence 67888999999988754
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0022 Score=58.13 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=39.1
Q ss_pred HhcCCCccEEEccCC--CCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 242 FQSMHALRVLDSSQN--AKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 242 ~~~l~~Lr~L~L~~~--~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..|++|+.|+++.| .-...++...-.+++|++|++++|+|+.+ +++++ +..+.+|..|+++.|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--------stl~p--l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--------STLRP--LKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc--------cccch--hhhhcchhhhhcccCCc
Confidence 445566666666666 22223333344457777777777766642 12333 66777777788777764
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0005 Score=66.09 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=21.7
Q ss_pred CCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh-ccccCceeEEEEe
Q 012641 304 LLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE-SLKHLQEISVIIL 351 (459)
Q Consensus 304 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~ 351 (459)
+..||.|+.++|... +...+..|+ +..+|+.|.+...
T Consensus 293 c~~lq~l~~s~~t~~-----------~d~~l~aLg~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDI-----------TDEVLWALGQHCHNLQVLELSGC 330 (483)
T ss_pred hhHhhhhcccCCCCC-----------chHHHHHHhcCCCceEEEecccc
Confidence 445666666655431 344555665 4577888877643
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.00088 Score=36.54 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=10.2
Q ss_pred ccEEEccCCCCccccccccc
Q 012641 248 LRVLDSSQNAKLSKLHVGEG 267 (459)
Q Consensus 248 Lr~L~L~~~~~i~~lP~~i~ 267 (459)
|++||+++| .++.+|.+++
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 455555555 5555555444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0033 Score=34.24 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=15.5
Q ss_pred CCCEEEcCCCCCcccCHHHHH
Q 012641 271 DLQYLNLSNTNICELPIGIKK 291 (459)
Q Consensus 271 ~L~~L~l~~~~l~~lp~~i~~ 291 (459)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888887776543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.0017 Score=59.42 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=62.7
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc--ccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH--VGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP--~~i~~L~~L~~L 275 (459)
..++.|..+++ .+.++ .....++.|++|.|+-|.+..+.+ +..|+.|+.|+|..| .|..+- .-+.+|++|+.|
T Consensus 19 ~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCC-CccHH-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 56778888888 88887 666778888888888888877766 888888888888888 777663 335677888888
Q ss_pred EcCCCCC
Q 012641 276 NLSNTNI 282 (459)
Q Consensus 276 ~l~~~~l 282 (459)
=|..|+.
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 8877754
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.02 Score=52.37 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=47.4
Q ss_pred CCcceeeeeeccccc-----ccchhHHhcCCCccEEEccCCCCcc----cccc-------cccCCCCCCEEEcCCCCCc-
Q 012641 221 CPRLLTLLVRYTMIK-----EFENKFFQSMHALRVLDSSQNAKLS----KLHV-------GEGELIDLQYLNLSNTNIC- 283 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~-----~~~~~~~~~l~~Lr~L~L~~~~~i~----~lP~-------~i~~L~~L~~L~l~~~~l~- 283 (459)
+..+..+++++|.+. .+... +.+-++|++-+++.- ... .+|+ .+-++++|+..+||.|.+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~-ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNV-IANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHH-HhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 445555666666432 22222 445566666666543 211 2222 2445677777777777544
Q ss_pred ccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 284 ELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 284 ~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+.|+.++.+ |++-+.|.||.+++|..
T Consensus 107 ~~~e~L~d~--------is~~t~l~HL~l~NnGl 132 (388)
T COG5238 107 EFPEELGDL--------ISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccchHHHHH--------HhcCCCceeEEeecCCC
Confidence 444443331 66667777777777765
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.014 Score=29.49 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=6.7
Q ss_pred CCCEEEcCCCCCcccC
Q 012641 271 DLQYLNLSNTNICELP 286 (459)
Q Consensus 271 ~L~~L~l~~~~l~~lp 286 (459)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
|
... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.03 Score=51.01 Aligned_cols=106 Identities=23% Similarity=0.202 Sum_probs=71.6
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecc--ccc-ccchhHHhcCCCccEEEccCCCCccccccc---ccCCCC
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYT--MIK-EFENKFFQSMHALRVLDSSQNAKLSKLHVG---EGELID 271 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~---i~~L~~ 271 (459)
..+..+++.+. .+..+ ..+..+++|+.|.++.| ++. .++.- ...+++|++|++++| +|+. +++ ...+.+
T Consensus 43 ~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKD-LSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-cccc-ccccchhhhhcc
Confidence 45666776666 66666 77888999999999998 332 33333 556699999999999 7764 222 566788
Q ss_pred CCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 272 LQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 272 L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
|..|++..|....+-.-=. .++.-|++|+.|+.....
T Consensus 118 L~~Ldl~n~~~~~l~dyre--------~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYRE--------KVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccccccHHH--------HHHHHhhhhccccccccC
Confidence 8899999886655421100 014556677777765543
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.033 Score=28.08 Aligned_cols=17 Identities=47% Similarity=0.624 Sum_probs=10.1
Q ss_pred CCccEEEccCCCCccccc
Q 012641 246 HALRVLDSSQNAKLSKLH 263 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~~lP 263 (459)
++|++|++++| .++++|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 36888888888 777776
|
... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.06 Score=30.45 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=16.5
Q ss_pred CCCCCEEEcCCCCCcccCHHH
Q 012641 269 LIDLQYLNLSNTNICELPIGI 289 (459)
Q Consensus 269 L~~L~~L~l~~~~l~~lp~~i 289 (459)
|.+|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.06 Score=30.45 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=16.5
Q ss_pred CCCCCEEEcCCCCCcccCHHH
Q 012641 269 LIDLQYLNLSNTNICELPIGI 289 (459)
Q Consensus 269 L~~L~~L~l~~~~l~~lp~~i 289 (459)
|.+|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.044 Score=48.05 Aligned_cols=42 Identities=33% Similarity=0.587 Sum_probs=34.4
Q ss_pred cccCccEEEEecC-CCCCC--cccccCCCcceeecccCcchhhhc
Q 012641 398 FSQNLQDLSIINC-SIKDL--TCILYIPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 398 ~l~~L~~L~L~~~-~l~~l--p~l~~l~~L~~L~l~~c~~l~~i~ 439 (459)
..++|+.|+|++| ++++- -++..+++|+.|.+++.+.+....
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANLE 193 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhchH
Confidence 3789999999999 87774 468899999999999877665443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.007 Score=54.03 Aligned_cols=85 Identities=14% Similarity=0.064 Sum_probs=65.7
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
..+.+..|.+..+ ..-.+-..++-+..+..|+++.|.+..+|.+ ++....++.+++..| +.+.+|.+.+.+++++|+
T Consensus 40 ~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 3455666666665 4444434555567777888888888888888 888888999999888 899999999999999999
Q ss_pred EcCCCCCc
Q 012641 276 NLSNTNIC 283 (459)
Q Consensus 276 ~l~~~~l~ 283 (459)
++.+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99998754
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.011 Score=57.17 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=61.7
Q ss_pred cceEEEeecCCCccccC--CCCCCCCcceeeeeeccc-cc-ccchhHHhcCCCccEEEccCCCCcccc--cccccCCCCC
Q 012641 199 EAVRVSLWRSPSIDSLS--PTPPCCPRLLTLLVRYTM-IK-EFENKFFQSMHALRVLDSSQNAKLSKL--HVGEGELIDL 272 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~l--P~~i~~L~~L 272 (459)
-++.+++.+.-.+..-+ .....+++++.|.+.+|. +. ..-.++-..++.|++|++..|..++.. -.-....++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45677777763333222 334568888888888873 22 122233456788888888887566543 2223456788
Q ss_pred CEEEcCCC-CCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 273 QYLNLSNT-NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 273 ~~L~l~~~-~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
.||+++.| .|+. .+++ .+ ..+.++++.+.+.||.
T Consensus 219 ~~lNlSwc~qi~~--~gv~----~~----~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 219 KYLNLSWCPQISG--NGVQ----AL----QRGCKELEKLSLKGCL 253 (483)
T ss_pred HHhhhccCchhhc--Ccch----HH----hccchhhhhhhhcccc
Confidence 88888887 3443 1111 11 3445556666555654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.86 Score=37.06 Aligned_cols=58 Identities=12% Similarity=0.269 Sum_probs=21.5
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSN 279 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~ 279 (459)
..+++|+.+.+..+ +..++...|.++..|+.+.+..+ +..++. .+....+|+.+++..
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEETT
T ss_pred cccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccccCc
Confidence 34444555554432 44444444445444555555322 223322 223344555555443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.29 Score=27.57 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=16.4
Q ss_pred CCCccEEEccCCCCcccccccc
Q 012641 245 MHALRVLDSSQNAKLSKLHVGE 266 (459)
Q Consensus 245 l~~Lr~L~L~~~~~i~~lP~~i 266 (459)
+.+|++|+|++| .++.+|...
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 467888888888 888887654
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.29 Score=27.57 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=16.4
Q ss_pred CCCccEEEccCCCCcccccccc
Q 012641 245 MHALRVLDSSQNAKLSKLHVGE 266 (459)
Q Consensus 245 l~~Lr~L~L~~~~~i~~lP~~i 266 (459)
+.+|++|+|++| .++.+|...
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 467888888888 888887654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.24 Score=50.47 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=8.3
Q ss_pred cceeecccCcchh
Q 012641 424 LRFLFAKDCPSLE 436 (459)
Q Consensus 424 L~~L~l~~c~~l~ 436 (459)
|+.|+++.|..+.
T Consensus 403 l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 403 LRVLNLSDCRLVT 415 (482)
T ss_pred cceEecccCcccc
Confidence 6777777666444
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.069 Score=47.87 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=58.9
Q ss_pred CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhh
Q 012641 216 PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKA 295 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~ 295 (459)
.++..+....+|+++.|.+..+... |+.++.|.-||++.| .+..+|...+.+..++.+++..|....+|.
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~-------- 105 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPK-------- 105 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCc--------
Confidence 4445566666677766655555554 666666666777777 676677777777777777776666666554
Q ss_pred CCCCcCCCCCCCCEeeecCCCC
Q 012641 296 IPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 296 lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+ .+.+++++.++.-++.+
T Consensus 106 ---s-~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 106 ---S-QKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ---c-ccccCCcchhhhccCcc
Confidence 4 77888888888877654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.7 Score=35.33 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=48.1
Q ss_pred CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhh
Q 012641 216 PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLK 294 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~ 294 (459)
..+..+.+|+.+.+.. .+..++...|.++..|+.+.+..+ +..++. .+.....|+++.+.. .+..++.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~------- 74 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGD------- 74 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-------
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccc-------
Confidence 3456677888888764 566777777888888888888765 555543 355666788888865 4444432
Q ss_pred hCCCCcCCCCCCCCEeeecCC
Q 012641 295 AIPAGMLSSLLSLRVFSWVPT 315 (459)
Q Consensus 295 ~lp~~~i~~L~~L~~L~l~~~ 315 (459)
.++..+++|+.+.+..+
T Consensus 75 ----~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 75 ----NAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp ----TTTTT-TTECEEEETTT
T ss_pred ----ccccccccccccccCcc
Confidence 33677888888887543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.21 E-value=2.1 Score=39.59 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=79.7
Q ss_pred CCCCCCCcceeeeeeccccc-ccc---hhHHhcCCCccEEEccCCCCccccc--------------ccccCCCCCCEEEc
Q 012641 216 PTPPCCPRLLTLLVRYTMIK-EFE---NKFFQSMHALRVLDSSQNAKLSKLH--------------VGEGELIDLQYLNL 277 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~~l~~Lr~L~L~~~~~i~~lP--------------~~i~~L~~L~~L~l 277 (459)
+.+..||+|+..+++.|.+. ..| .+++++-..|..|.+++| .+..+- +.+.+-+.|++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 56678999999999998443 222 355778889999999999 766442 22345677999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
..|.+..-|...... . +..=.+|+++.+..|.+.. .+........+..+++|+.|++..+
T Consensus 165 grNRlengs~~~~a~------~-l~sh~~lk~vki~qNgIrp-------egv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 165 GRNRLENGSKELSAA------L-LESHENLKEVKIQQNGIRP-------EGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred ccchhccCcHHHHHH------H-HHhhcCceeEEeeecCcCc-------chhHHHHHHHHHHhCcceeeecccc
Confidence 999888777543321 1 2222578888888887621 0001112345667888999988754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=84.54 E-value=6 Score=44.15 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhh-hhcCCCchhHHHHhhhhcc
Q 012641 19 ELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKF-SYDRLTSETHKTCFLYCSL 97 (459)
Q Consensus 19 ~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~lk~cfl~~~~ 97 (459)
+...+|.+.|+|.|+++..++..++..... -......+... ....+...+.- -++.||+ ..+..++..|+
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~ 276 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSS--LHDSARRLAGI------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSV 276 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCc--hhhhhHhhcCC------CchhHHHHHHHHHHhcCCH-HHHHHHHHhcc
Confidence 356789999999999999999888652210 01111111100 01134444433 3889999 59999999999
Q ss_pred cCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeehHHHHHHHHHHH
Q 012641 98 FPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIA 171 (459)
Q Consensus 98 fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~hdli~~l~~~~~ 171 (459)
++. ++. .+.. .+... +.+...+++|.+++++..... +....|+.|++++++.....
T Consensus 277 ~~~---~~~-~l~~-----~l~~~--------~~~~~~L~~l~~~~l~~~~~~-~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 277 LRS---MND-ALIV-----RVTGE--------ENGQMRLEELERQGLFIQRMD-DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ccc---CCH-HHHH-----HHcCC--------CcHHHHHHHHHHCCCeeEeec-CCCCEEehhHHHHHHHHHHH
Confidence 873 442 2222 11111 124567899999999753221 11346889999999998764
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=82.84 E-value=0.78 Score=25.91 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=14.0
Q ss_pred CCCCEEEcCCCCCcccCH
Q 012641 270 IDLQYLNLSNTNICELPI 287 (459)
Q Consensus 270 ~~L~~L~l~~~~l~~lp~ 287 (459)
.+|++|++++|++++||+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367888888888888775
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.02 E-value=0.31 Score=42.87 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=31.2
Q ss_pred ccCccEEEEecC-CCCC--Ccccc-cCCCcceeecccCcchhhhcc
Q 012641 399 SQNLQDLSIINC-SIKD--LTCIL-YIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 399 l~~L~~L~L~~~-~l~~--lp~l~-~l~~L~~L~l~~c~~l~~i~~ 440 (459)
++.++.|.+.+| .+.+ +..++ -.|+|+.|+|++|+.+++-+-
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 677888888888 6555 22232 368999999999999987555
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=81.49 E-value=0.95 Score=25.47 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCCcceeecccCcchhhhc
Q 012641 421 IPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 421 l~~L~~L~l~~c~~l~~i~ 439 (459)
+|+|+.|+|++|+++.+..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4789999999999887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 7e-26
Identities = 17/168 (10%), Positives = 45/168 (26%), Gaps = 11/168 (6%)
Query: 12 NSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSG-----FE 66
+ ++ ++ G P L+ + + +L+
Sbjct: 310 PVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEK-MAQLNNKLESRGLVGVECITP 368
Query: 67 GMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIA 126
+ L+ + L+ E ++ + + P I + + + +
Sbjct: 369 YSYKSLAMALQRCVEVLSDE-DRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLD 427
Query: 127 AAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQ 174
E L+ L L + FK+ I+ + +Q
Sbjct: 428 ---DEVADRLKRLSKRGALLSGK-RMPVLTFKIDHIIHMFLKHVVDAQ 471
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 21/161 (13%)
Query: 13 SHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQ-----RYPSGFEG 67
++ E A ++ C G PL + IG+ + P+ W Y +++LQ R
Sbjct: 302 KKADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSY 359
Query: 68 MGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAA 127
+ + S + L + K + S+ + + L LW E
Sbjct: 360 DYEALDEAMSISVEMLREDI-KDYYTDLSILQKDVKVPTKVLCILWDMET---------- 408
Query: 128 AKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMAL 168
E IL+ LL N + +HD+ D
Sbjct: 409 --EEVEDILQEFVNKSLLFCDR-NGKSFRYYLHDLQVDFLT 446
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 1e-15
Identities = 53/323 (16%), Positives = 98/323 (30%), Gaps = 91/323 (28%)
Query: 13 SHPEIRELAETVADM---------CGGLPLALVTIGSAMASRRDP----DNWR-YAIEEL 58
+ E++ L D P L I S RD DNW+ ++L
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESIRDGLATWDNWKHVNCDKL 355
Query: 59 QRYPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGL 118
+++ S + L ++ F S+FP S I L +W
Sbjct: 356 TT--------------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV-- 399
Query: 119 LRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASK 178
K + +++ L L+E+ E + I ++ + + + +
Sbjct: 400 ---------IKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLELKVKLENEYALHR 447
Query: 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRL-----------LTL 227
+V D ++ ++ D L P P L L
Sbjct: 448 SIV----D---------------HYNIPKTFDSDDLIP-----PYLDQYFYSHIGHHLKN 483
Query: 228 LVRYTMIKEFENKF--FQSMHA-LRVLDSSQNAKLSKLHVGEGELIDL----QYLNLSNT 280
+ + F F F+ + +R ++ NA S L+ L L Y+ ++
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT----LQQLKFYKPYICDNDP 539
Query: 281 NICELPIGIKKNLKAIPAGMLSS 303
L I L I ++ S
Sbjct: 540 KYERLVNAILDFLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 63/369 (17%), Positives = 115/369 (31%), Gaps = 88/369 (23%)
Query: 131 EGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQGASKILVFQETDKSIK 190
+ + +L+L L + + F + ++LR ++ S + +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVLRINYKFLMSP--------IKTEQRQ-P 105
Query: 191 VQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMH---- 246
T + E R L+ + + RL L + E +
Sbjct: 106 SMMTRMYIEQ-RDRLYNDNQV--FAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 247 ----ALRVLDSSQNAKLSK--------LHVG-----EGELIDLQYLNL----SNTNICEL 285
+ LD + K+ L++ E L LQ L + T+ +
Sbjct: 161 SGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 286 PIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL-LEELESLKHLQ 344
IK + +I A L LL + + LL L +++ K
Sbjct: 220 SSNIKLRIHSIQAE-LRRLLKSKPY------------------ENCLLVLLNVQNAKAWN 260
Query: 345 --EIS--VIILTLDS--LNKLKSSSKLQSCVRRQVMGLPE------LSSLIDISSSSLTT 392
+S +++ T + L +++ + M L L +D L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 393 MMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAIDLHS-EPSE-- 449
+ N + LSII SI+D +C L II L+ EP+E
Sbjct: 321 EVLTT---NPRRLSIIAESIRDGLA-----TWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 450 ---ENLSMF 455
+ LS+F
Sbjct: 373 KMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 63/458 (13%), Positives = 128/458 (27%), Gaps = 145/458 (31%)
Query: 52 RYAIEELQRYPSGFEGMGTRVFPLLKFSYDRLTSETHKTC---------FLYC------- 95
L E + V +L+ +Y L S ++
Sbjct: 65 LRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 96 -SLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLK------LA---CLL 145
+F + + ++L + LL + N++++ + +A CL
Sbjct: 123 NQVFAKYNVSRLQPYLKL--RQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 146 EEVEVNNSEDFFKMHDILRDMALWIASSQGASKILVFQETDKSIKVQETASWNEAVRVSL 205
+V+ FK+ W+ + +++ ++
Sbjct: 174 YKVQCKMD---FKIF--------WLNLKN-------CNSPETVLEML----QKLLYQIDP 211
Query: 206 WRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG 265
+ D S + L R K +EN L VL + QNAK
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-------CLLVLLNVQNAKA------ 258
Query: 266 EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAG-FNYGS 324
NLS C K L + TR+ ++ S
Sbjct: 259 ------WNAFNLS----C-------KIL-------------------LTTRFKQVTDFLS 282
Query: 325 SVPGVTVLLLEELESLKHLQEISVIILTLD-SLNKLKSSSK-------------LQSCVR 370
+ + L +L + S+++ LD L ++ +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 371 R----QVMGLPELSSLIDISSSSLTTM-MKGHFSQNLQDLSIINCSIKDLTCILYIP--R 423
+ + +L+++I+ S + L + F LS+ S IP
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF----DRLSVFPPSAH-------IPTIL 391
Query: 424 LRFLFAKDCPSLEEIIAIDLHS----EPSEENLSMFLH 457
L ++ S ++ LH E + ++ +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-05
Identities = 48/367 (13%), Positives = 101/367 (27%), Gaps = 102/367 (27%)
Query: 4 LKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPS 63
L V +V N+ + C L L T + L +
Sbjct: 247 LLVLLNVQNA-----KAWNAFNLSCKIL---LTTRFKQVTDFLSAA--TTTHISLDHHSM 296
Query: 64 GF---EGMGTRVFPLLKF---SYDRLTSETHKTCFLYCSLFPRSQIIMKDEL--IELWIG 115
E LLK+ L E T S+ S ++D L + W
Sbjct: 297 TLTPDEVKSL----LLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRDGLATWDNW-- 347
Query: 116 EGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIASSQG 175
+ + D +I SL + LE E + ++
Sbjct: 348 KHVNCDKLT--------TIIESSLNV---LEPAE---------YRKMFDRLS-------- 379
Query: 176 ASKILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIK 235
VF I + +W ++ L +Y++++
Sbjct: 380 -----VFPP-SAHIP--------TILLSLIWFDVIKS-------DVMVVVNKLHKYSLVE 418
Query: 236 EFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQY---LNLSNTNICELP------ 286
+ + S+ ++ + + LH ++D Y + ++
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALH---RSIVD-HYNIPKTFDSDDLIPPYLDQYFY 474
Query: 287 --IG--IKKNLKAIPAGMLSSL-LSLRVFSWVPT--RYAGFNYGSSVPGVTVLLLEELES 339
IG +K + + L R ++ R+ + + G + L++L+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWNA--SGSILNTLQQLKF 529
Query: 340 -LKHLQE 345
++ +
Sbjct: 530 YKPYICD 536
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 19/235 (8%)
Query: 210 SIDSLSPTP-PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-G 267
+ SL+ L L + Y I + ++ F + L+VL+ S N L +L+
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFY 335
Query: 268 ELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSS--LLSLRVFSWVPTRYAGFNYGSS 325
L + Y++L +I + K L+ + L L ++ +P + N +
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395
Query: 326 VPGVTVLLLEELESLKHLQEISV--IILTLDSLNKLK-SSSKLQSCVRRQV-MGLPELSS 381
+P + + S L+ + + +L + L L + ++ SC Q P L
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 382 LIDISSSSLTTMMKGHFS-------QNLQDLSIINCSIKDLT--CILYIPRLRFL 427
L + + L + +LQ L + + + L ++ LR L
Sbjct: 456 L-FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 36/240 (15%), Positives = 71/240 (29%), Gaps = 40/240 (16%)
Query: 213 SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELID 271
+L+ P LL+ + I+ F + L++L+ + L +
Sbjct: 15 NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74
Query: 272 LQYLNLSNTNICELPIGIKKNLK---------------AIPAGMLSSLLSLRVFSWVPTR 316
L+ L+L ++ I L + L + G +L +L
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL------ 128
Query: 317 YAGFNYGSSVPGVTVLL----LEEL------------ESLKHLQEISVIILTLDSLNKLK 360
N S+ L+ + L+ LQ ++ +L + N L
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL-AANSLY 187
Query: 361 SSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILY 420
S + L L D+S + T + G+FS + + +
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEIL-DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 40/216 (18%), Positives = 71/216 (32%), Gaps = 34/216 (15%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTN 281
P++ + ++ I +++ F+ + L+ LD N L+ +H + + + LS
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFLSGNK 392
Query: 282 ICELPIG---------IKKNLKAIPAG-MLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV 331
+ LP + L+ + L + L++ N SS G
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL------ILNQNRFSSCSGDQT 446
Query: 332 L-LLEELESLK----HLQEISVIILTLDSLNKLK-------SSSKLQSCVRRQVMGLPEL 379
LE L LQ L D L + + L S L L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506
Query: 380 SSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDL 415
L ++S+ LT + NL+ L I +
Sbjct: 507 RGL-SLNSNRLTVLSHNDLPANLEILDISRNQLLAP 541
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 8e-08
Identities = 42/216 (19%), Positives = 79/216 (36%), Gaps = 30/216 (13%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNT 280
L TL +R +K F + L LD S+N K+ L +L +L+ L + +
Sbjct: 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN 138
Query: 281 NICELPIGI-------------KKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVP 327
++ + K NL +IP LS L L V +++
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL------RLRHLNINAIR 192
Query: 328 GVTVLLLEELESL-----KHLQEISVIILTLDSLNKLK-SSSKLQSCVRRQVMGLPELSS 381
+ L L+ L +L ++ L +L L + L + V L L
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 382 LIDISSSSLTTMMKGHFS--QNLQDLSIINCSIKDL 415
L ++S + ++T+ LQ++ ++ + +
Sbjct: 253 L-NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 49/230 (21%), Positives = 80/230 (34%), Gaps = 32/230 (13%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNT 280
L + IK F S L L+ ++N +S + G L +L+ L L +
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 281 NICELPIGIKKNLKA-------------IPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVP 327
+ +P+G+ L + M L +L+ G N +
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL------EVGDNDLVYIS 144
Query: 328 GVTVLLLEELESLK----HLQEISVIILT-LDSLNKLKSSSKLQSCVRRQVM-GLPELSS 381
L LE L +L I L+ L L L+ + +R L L
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204
Query: 382 LIDISSSSLTTMMKGHFSQ--NLQDLSIINCSIKDLTC--ILYIPRLRFL 427
L +IS M + NL LSI +C++ + + ++ LRFL
Sbjct: 205 L-EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 46/203 (22%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTN 281
L+ L +R+ I + F+ ++ L+VL+ S L + ++L L++++ N
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235
Query: 282 ICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK 341
+ A+P + L+ LR +N S++ G L L
Sbjct: 236 L-----------TAVPYLAVRHLVYLRFL------NLSYNPISTIEGSM------LHELL 272
Query: 342 HLQEISVIILTLDSLNKLKSSSKLQSCVRRQVM-GLPELSSLIDISSSSLTTMMKGHFSQ 400
LQE + L +L + V GL L L ++S + LTT+ + F
Sbjct: 273 RLQE-----IQLVG-GQL-------AVVEPYAFRGLNYLRVL-NVSGNQLTTLEESVFHS 318
Query: 401 --NLQDLSII------NCSIKDL 415
NL+ L + +C + +
Sbjct: 319 VGNLETLILDSNPLACDCRLLWV 341
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 204 SLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH 263
+ P +D+++P L +L + + + + + LR L+ S N +S +
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIE 264
Query: 264 VGE-GELIDLQYLNLSNTNICELPIGIKKNLKA-------------IPAGMLSSLLSLRV 309
EL+ LQ + L + + + L + + S+ +L
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324
Query: 310 FS 311
Sbjct: 325 LI 326
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 45/219 (20%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNT 280
R V + +K+ QS ++ LD S N LS++ + L+ LNLS+
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN 68
Query: 281 NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 340
+ E LS+L +L + NY ++EL
Sbjct: 69 VLYETL----------DLESLSTLRTLDL---------NNNY-----------VQELLVG 98
Query: 341 KHLQE-------ISVI-ILTLDSLNKLK-SSSKLQSCVRRQVMGLPELSSLIDISSSSLT 391
++ IS + + +++K+ + L D+ + +
Sbjct: 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEID 157
Query: 392 TMMKGHF---SQNLQDLSIINCSIKDLTCILYIPRLRFL 427
T+ S L+ L++ I D+ + +L+ L
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 18/235 (7%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE--GELIDLQYLNLS 278
L L+ T + E+ + L+ L+ + N + + L +L +++LS
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLS 161
Query: 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR-YAGFN----YGSSVPGVTVLL 333
I + + + L+ P LS +SL ++ + + G + ++
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM 221
Query: 334 LEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL-IDISSSSLTT 392
L++L L +I+ L+ + GL +++ ++ ++ +
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFE------PSIMEGLCDVTIDEFRLTYTNDFS 275
Query: 393 MMKGHFS--QNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAIDLHS 445
F N+ +S+ SIK L + + + L C L++ +DL
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC-QLKQFPTLDLPF 329
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 28/203 (13%)
Query: 234 IKEFENKFFQSMHALRV--LDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKK 291
++ FE + + + + + S V L ++ ++L+ +I L K
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306
Query: 292 -----------NLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL-LEELE- 338
LK P L L SL + N GS L L L+
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKSLTL---------TMNKGSISFKKVALPSLSYLDL 357
Query: 339 ---SLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMK 395
+L S L +SL L S + MGL EL L D S+L + +
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL-DFQHSTLKRVTE 416
Query: 396 GHFSQNLQDLSIINCSIKDLTCI 418
+L+ L ++ S +
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKID 439
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 20/134 (14%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSN 279
+LL L + YT K + F + +L L + N+ +L +L+LS
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 280 TNICELPIGIKKNLK-------------AIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSV 326
+ ++ G+ L + + + L SL FN +
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL------DCSFNRIETS 536
Query: 327 PGVTVLLLEELESL 340
G+ + L
Sbjct: 537 KGILQHFPKSLAFF 550
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 37/255 (14%), Positives = 79/255 (30%), Gaps = 44/255 (17%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNT 280
L L + I+ E+K + +H L L + N + G L L+ L T
Sbjct: 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVET 114
Query: 281 NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL----LEE 336
+ ++ + + L++L+ N+ S L
Sbjct: 115 KL-----------ASLESFPIGQLITLKKL------NVAHNFIHSCKLPAYFSNLTNLVH 157
Query: 337 L------------ESLKHLQEISVIILTLD-SLNKLKSSSKLQSCVRRQVMGLPELSSLI 383
+ L+ L+E + L+LD SLN + ++ Q +L L
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-------IQDQAFQGIKLHEL- 209
Query: 384 DISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAIDL 443
+ + ++ + QNL L + + + + + +
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Query: 444 HSEPSEENLSMFLHL 458
++ +++ F L
Sbjct: 270 YTNDFSDDIVKFHCL 284
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 30/210 (14%), Positives = 82/210 (39%), Gaps = 31/210 (14%)
Query: 218 PPCCPRLLT-LLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYL 275
P + L + + I + ++ L+VL + +++ + L L++L
Sbjct: 21 PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHL 79
Query: 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL-L 334
+LS+ +L ++ + L SL+ N ++ ++ L
Sbjct: 80 DLSDN-----------HLSSLSSSWFGPLSSLKYL------NLMGNPYQTLGVTSLFPNL 122
Query: 335 EELESLK--HLQEISVI----ILTLDSLNKLK-SSSKLQSCVRRQVMGLPELSSLIDISS 387
L++L+ +++ S I L SLN+L+ + L++ + + + ++ L +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL-TLHL 181
Query: 388 SSLTTMMKGHFS--QNLQDLSIINCSIKDL 415
S +++ +++ L + + ++
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARF 211
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 32/221 (14%), Positives = 62/221 (28%), Gaps = 37/221 (16%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 280
C + +R L Q L L ++ + + N+
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320
Query: 281 NICELPIGIKKNLKAIPAGMLSSLLSLRV--FSWVPTRYAGFNYGSSVPGVTVLLLEELE 338
+ +P L SL S N
Sbjct: 321 KV-----------FLVPCSFSQHLKSLEFLDLSE--------NLMVEEYLKNSACKGAWP 361
Query: 339 SLKHL-------QEISVIILTLDSLNKLK----SSSKLQSCVRRQVMGLPELSSLIDISS 387
SL+ L + + L +L L S + ++ L ++SS
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFL-NLSS 419
Query: 388 SSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLF 428
+ + + Q L+ L + N ++ + L++PRL+ L+
Sbjct: 420 TGIRVVKTCIP-QTLEVLDVSNNNLDSFS--LFLPRLQELY 457
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 41/210 (19%), Positives = 72/210 (34%), Gaps = 45/210 (21%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE----GELIDLQYLN 276
++ + V + + F Q + +L LD S+N + + ++ G LQ L
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLV 367
Query: 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRV--FSWVPTRYAGFNYGSSVPGVTVLLL 334
LS ++ + +L +L +L S N +P +
Sbjct: 368 LSQNHLRSMQK---------TGEILLTLKNLTSLDISR--------NTFHPMPD-SCQWP 409
Query: 335 EELESL----KHLQEISVIILT----LD-SLNKLKSSSKLQSCVRRQVMGLPELSSLIDI 385
E++ L ++ + I LD S N L S S + LP L L I
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----------LFLPRLQEL-YI 458
Query: 386 SSSSLTTMMKGHFSQNLQDLSIINCSIKDL 415
S + L T+ L + I +K +
Sbjct: 459 SRNKLKTLPDASLFPVLLVMKISRNQLKSV 488
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 30/232 (12%)
Query: 218 PPCCPRLLTLL-VRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGE-LIDLQYL 275
P P LL ++ I E ++ F+++ L L N K+SK+ G L+ L+ L
Sbjct: 47 PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERL 105
Query: 276 NLSNTNICELPIGIKKNLK----------AIPAGMLSSLLSLRVFSWVPTRYAGFNYGSS 325
LS + ELP + K L+ + + + L + V G N S
Sbjct: 106 YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV------ELGTNPLKS 159
Query: 326 VPGVTVLLLEELESLKHLQ----EISVI-ILTLDSLNKLK-SSSKLQSCVRRQVMGLPEL 379
G+ + ++ L +++ I+ I SL +L +K+ + GL L
Sbjct: 160 S-GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 380 SSLIDISSSSLTTMMKGHFS--QNLQDLSIINCSIKDLTCILY-IPRLRFLF 428
+ L +S +S++ + G + +L++L + N + + L ++ ++
Sbjct: 219 AKL-GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY 269
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 21/156 (13%)
Query: 15 PEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQ-RYPSGFEGMGTRVF 73
++ A ++ C G PL + IG+ + R P+ W Y + +LQ + + +
Sbjct: 304 EDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDY 361
Query: 74 P----LLKFSYDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAK 129
+ S + L E K + S+ + + L LW
Sbjct: 362 EALDEAMSISVEML-REDIKDYYTDLSILQKDVKVPTKVLCVLW------------DLET 408
Query: 130 REGNLILESLKLACLLEEVEVNNSEDFFKMHDILRD 165
E IL+ LL N + +HD+ D
Sbjct: 409 EEVEDILQEFVNKSLL-FCNRNGKSFCYYLHDLQVD 443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 3e-06
Identities = 38/229 (16%), Positives = 77/229 (33%), Gaps = 48/229 (20%)
Query: 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258
E ++ +L + S+ + ++ + IK + Q + + L + N K
Sbjct: 22 ETIKDNL-KKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-K 76
Query: 259 LSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318
L+ + L +L +L L I +L L L L+
Sbjct: 77 LTDIK-PLTNLKNLGWLFLDENKIKDLS-------------SLKDLKKLKSL------SL 116
Query: 319 GFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE 378
N + ++ L HL ++ + L NK+ + L L +
Sbjct: 117 EHNG-----------ISDINGLVHLPQLESLYL---GNNKITDITVLS--------RLTK 154
Query: 379 LSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFL 427
L +L + + ++ ++ LQ+L + I DL + + L L
Sbjct: 155 LDTL-SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 202
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 31/221 (14%), Positives = 78/221 (35%), Gaps = 47/221 (21%)
Query: 211 IDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELI 270
I + P + ++ + + ++++ + ++ + + + G L
Sbjct: 11 IKQIFPDDAF-AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQ-GIQYLP 65
Query: 271 DLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT 330
++ L L+ + ++ L++L +L + N +
Sbjct: 66 NVTKLFLNGNKLTDIK-------------PLTNLKNLGWL------FLDENKIKDLSS-- 104
Query: 331 VLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSL 390
L+ LK L+ L+L+ N + + L LP+L SL + ++ +
Sbjct: 105 ------LKDLKKLKS-----LSLEH-NGISDINGLVH--------LPQLESL-YLGNNKI 143
Query: 391 TTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKD 431
T + L LS+ + I D+ + + +L+ L+
Sbjct: 144 TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 184
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 47/206 (22%), Positives = 75/206 (36%), Gaps = 35/206 (16%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG--EGELIDLQYLNLSN 279
L + I+ + F+ + L +L S+N + + +G G L +L L L +
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG-LANLNTLELFD 121
Query: 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 339
N L IP G L L+ + N S+P + L
Sbjct: 122 -N----------RLTTIPNGAFVYLSKLKEL------WLRNNPIESIPSYAFNRIPSLRR 164
Query: 340 LK-----HLQEISVIILT-LDSLNKLKSSSKLQSCVRRQVMGLPELSSL--IDISSSSLT 391
L L IS L +L L L C R++ L L L +D+S + L+
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYL----NLAMCNLREIPNLTPLIKLDELDLSGNHLS 220
Query: 392 TMMKGHFS--QNLQDLSIINCSIKDL 415
+ G F +LQ L +I I+ +
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVI 246
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 44/247 (17%), Positives = 79/247 (31%), Gaps = 37/247 (14%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSN 279
C L L + I++ +N F L LD S N LS +G +L +LQ L LSN
Sbjct: 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSN 154
Query: 280 TNICELPIGIKK---------------NLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS 324
I L +K G ++ L +
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL------FLNNVQLG 208
Query: 325 SVPGVTVLLLEELESLKHLQ----EISVII------LTLDSLNKLK-SSSKLQSCVRRQV 373
+ L S+++L ++S L +L L S + L
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Query: 374 MGLPELSSLIDISSSSLTTMMKGHFS--QNLQDLSIINCSIKDLTCILYIPRLRFLFAKD 431
LP+L + +++ + N++ L++ K + +P++ +
Sbjct: 269 AWLPQLEYF-FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Query: 432 CPSLEEI 438
LE +
Sbjct: 328 LKCLEHL 334
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 36/206 (17%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGE---LIDLQYLNL 277
+ + + Y + F + +L+ L + L + L +L L+L
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDL 487
Query: 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNY-----GSSVPGVTVL 332
SN NI I ML L L + N + PG +
Sbjct: 488 SNNNI-----------ANINDDMLEGLEKLEIL------DLQHNNLARLWKHANPGGPIY 530
Query: 333 LLEELESLKHL--------QEISVIILTLDSLNKLK-SSSKLQSCVRRQVMGLPELSSLI 383
L+ L L L + + L L + + L + L SL
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL- 589
Query: 384 DISSSSLTTMMKGHFSQNLQDLSIIN 409
++ + +T++ K F ++L+ ++
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELD 615
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 42/226 (18%), Positives = 76/226 (33%), Gaps = 36/226 (15%)
Query: 218 PPCCPRLLTLL-VRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYL 275
P P +T+L + + ++ F L LD N +SKL +L L+ L
Sbjct: 20 PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVL 78
Query: 276 NLSNTNICELPIGIKKNLKA-------------IPAGMLSSLLSLRVFSWVPTRYAGFNY 322
NL + + +L I +L N
Sbjct: 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL------DLSHNG 132
Query: 323 GSSVPGVTVLLLEELESL-------KHLQEISVIILTLDSLNKLK-SSSKLQSCVRRQVM 374
SS T + LE L+ L + L+ + I SL KL+ SS++++
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192
Query: 375 GLPELSSLIDISSSSLTTMMKGHFSQ-----NLQDLSIINCSIKDL 415
+ L L +++ L + ++++LS+ N +
Sbjct: 193 AIGRLFGL-FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 37/245 (15%), Positives = 83/245 (33%), Gaps = 45/245 (18%)
Query: 210 SIDSLSPTP-PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQN--------AKLS 260
+++ + P+L + Y I+ + + +R L+ ++ A L
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 261 KLHVGE-GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAG 319
K+ L L++LN+ + +I I + M + L++L+
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDI-----------PGIKSNMFTGLINLKYL------SLS 361
Query: 320 FNYGSSVP-GVTVLLLEELESLKHLQ----EISVII-LTLDSLNKLK----SSSKLQSCV 369
++ S + L L +IS I L L+ +++ +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421
Query: 370 RRQV-MGLPELSSLIDISSSSLTTMMKGHFS--QNLQDLSIINCSIKDLTCILYI----P 422
Q GL + + +S + + + F+ +LQ L + ++K++
Sbjct: 422 TGQEWRGLENIFEI-YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480
Query: 423 RLRFL 427
L L
Sbjct: 481 NLTIL 485
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 41/235 (17%), Positives = 72/235 (30%), Gaps = 44/235 (18%)
Query: 220 CCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG----EGELIDLQYL 275
L L + IKEF F ++ L L + +L E ++ L
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNL 227
Query: 276 NLSNTNICELPIGIKKNLKA---------------IPAGMLSSLLSLRVFSWVPTRYAGF 320
+LSN+ + LK + + L L F + +
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF------FLEY 281
Query: 321 NYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELS 380
N + ++ L + L + + ++L SL K+ S L L
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS---------FQWLKCLE 332
Query: 381 SLIDISSSSLTTMMKGHFS--QNLQDLSIINCSIKDLTCI------LYIPRLRFL 427
L ++ + + + F+ NL+ LS+ N T L L L
Sbjct: 333 HL-NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 37/227 (16%), Positives = 76/227 (33%), Gaps = 32/227 (14%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE--GELIDLQYLNLS 278
L L+ T + EN + L+ L+ + N + + E L +L++L+LS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS 157
Query: 279 NTNICELPIGIKKNL-----------------KAIPAGMLSSL----LSLRVFSWVPTRY 317
+ I + + L I G + L+LR
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217
Query: 318 AGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSS----SKLQSCVRRQV 373
G + V L+L E + +L++ L+ L L + L + +
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFD--KSALEGLCNLTIEEFRLAYLDYYLDDII 275
Query: 374 MGLPELSSL--IDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCI 418
L+++ + S ++ + ++ Q L ++NC +
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 45/239 (18%), Positives = 87/239 (36%), Gaps = 46/239 (19%)
Query: 224 LLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNTNI 282
L + + ++ + F S L+VLD S+ ++ + G L L L L+ I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 283 CELPIGIKKNL-------------KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGV 329
L +G L ++ + L +L+ N S
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL------NVAHNLIQSFK-- 140
Query: 330 TVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSS 389
L E +L +L+ + + S NK++S + R + +P L+ +D+S +
Sbjct: 141 ---LPEYFSNLTNLEHLDL------SSNKIQS---IYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 390 LTTMMKGHF----------SQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEI 438
+ + G F N L+++ I+ L L + RL ++ +LE+
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG-LEVHRLVLGEFRNEGNLEKF 246
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 43/215 (20%), Positives = 69/215 (32%), Gaps = 40/215 (18%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNT 280
P L L++ + F + L L S N L ++ LQ L LS+
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN 175
Query: 281 NICELPIGIKKNLKAI-----PAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE 335
+ + + + +L L+ +++ A N + V G
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL------DASHNSINVVRG------- 222
Query: 336 ELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMK 395
L L L N L ++ L P L + D+S + L +M
Sbjct: 223 --PVNVELTI-----LKLQH-NNLTDTAWLL--------NYPGLVEV-DLSYNELEKIMY 265
Query: 396 GHFS--QNLQDLSIINCSIKDLTCILY-IPRLRFL 427
F Q L+ L I N + L IP L+ L
Sbjct: 266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 31/246 (12%), Positives = 75/246 (30%), Gaps = 39/246 (15%)
Query: 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262
V + + + + +++ S + +L+ + ++ ++
Sbjct: 26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEI 84
Query: 263 HVGE-GELIDLQYLNLSNTNICELPIGIKKNLKA-------------IPAGMLSSLLSLR 308
+Q L + I LP + +N+ +P G+ + L
Sbjct: 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144
Query: 309 VFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK----HLQEISVIILTLDSLNKLK-SSS 363
N + T L++L+ L + + + SL S +
Sbjct: 145 TL------SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 196
Query: 364 KLQSCVRRQVMGLPELSSL--IDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYI 421
L + L ++ +D S +S+ + L L + + ++ D +L
Sbjct: 197 LLST--------LAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNY 247
Query: 422 PRLRFL 427
P L +
Sbjct: 248 PGLVEV 253
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 216 PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275
P L+ + + Y +++ F M L L S N +L L++ + L+ L
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVL 300
Query: 276 NLSNTNICELPIGIKK------------NLKAIPAGMLSSLLSLRV 309
+LS+ ++ + + ++ + +L +L +
Sbjct: 301 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 7e-06
Identities = 43/215 (20%), Positives = 69/215 (32%), Gaps = 40/215 (18%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNT 280
P L L++ + F + L L S N L ++ LQ L LS+
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN 181
Query: 281 NICELPIGIKKNLKAI-----PAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE 335
+ + + + +L L+ +++ A N + V G
Sbjct: 182 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL------DASHNSINVVRG------- 228
Query: 336 ELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMK 395
L L L N L ++ L P L + D+S + L +M
Sbjct: 229 --PVNVELTI-----LKLQH-NNLTDTAWLL--------NYPGLVEV-DLSYNELEKIMY 271
Query: 396 GHFS--QNLQDLSIINCSIKDLTCIL-YIPRLRFL 427
F Q L+ L I N + L IP L+ L
Sbjct: 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 31/245 (12%), Positives = 76/245 (31%), Gaps = 37/245 (15%)
Query: 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262
V + + + + +++ S + +L+ + ++ ++
Sbjct: 32 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEI 90
Query: 263 HVGE-GELIDLQYLNLSNTNICELPIGIKKNLKA-------------IPAGMLSSLLSLR 308
+Q L + I LP + +N+ +P G+ + L
Sbjct: 91 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150
Query: 309 VFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ--EISVI-ILTLDSLNKLK-SSSK 364
N + T L++L L ++ + + + SL S +
Sbjct: 151 TL------SMSNNNLERIEDDTFQATTSLQNL-QLSSNRLTHVDLSLIPSLFHANVSYNL 203
Query: 365 LQSCVRRQVMGLPELSSL--IDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIP 422
L + L ++ +D S +S+ + L L + + ++ D +L P
Sbjct: 204 LST--------LAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYP 254
Query: 423 RLRFL 427
L +
Sbjct: 255 GLVEV 259
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 29/206 (14%), Positives = 68/206 (33%), Gaps = 19/206 (9%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 280
RL L + + N + Q + L+VLD S N L + + + L+ L L +
Sbjct: 277 MQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 334
Query: 281 NICELPIGIKKNLKAI-----------PAGMLSSLLSLRV------FSWVPTRYAGFNYG 323
+I L + LK + + ++ V G
Sbjct: 335 SIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCK 394
Query: 324 SSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLI 383
S LL+ + ++++ + + + S L + +Q + + +
Sbjct: 395 ESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQL 454
Query: 384 DISSSSLTTMMKGHFSQNLQDLSIIN 409
+ + L ++ ++ +Q ++
Sbjct: 455 EAEVNELRAEVQQLTNEQIQQEQLLQ 480
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 13/105 (12%)
Query: 216 PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275
P L+ + + Y +++ F M L L S N +L L++ + L+ L
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVL 306
Query: 276 NLSNTNICELPIGIKK------------NLKAIPAGMLSSLLSLR 308
+LS+ ++ + + ++ + +L +L
Sbjct: 307 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 33/205 (16%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG--EGELIDLQYLNLSN 279
L + I+ + F+ +H L VL +N + ++ VG G L L L L +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG-LASLNTLELFD 132
Query: 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 339
N L IP+G L LR + N S+P + L
Sbjct: 133 -N----------WLTVIPSGAFEYLSKLREL------WLRNNPIESIPSYAFNRVPSLMR 175
Query: 340 LK-----HLQEISVIILT-LDSLNKLK-SSSKLQSCVRRQVMGLPELSSLIDISSSSLTT 392
L L+ IS L +L L ++ + L L L ++S +
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEEL-EMSGNHFPE 232
Query: 393 MMKGHFS--QNLQDLSIINCSIKDL 415
+ G F +L+ L ++N + +
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLI 257
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 39/212 (18%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNT 280
L L + ++ + F + L LD S NA+L + L L L+L
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR- 114
Query: 281 NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 340
L+ + G+ L +L+ Y N ++P +L +L
Sbjct: 115 C----------GLQELGPGLFRGLAALQYL------YLQDNALQALP---DDTFRDLGNL 155
Query: 341 KHLQ----EISVII-LTLDSLNKLK----SSSKLQSCVRRQVMGLPELSSLIDISSSSLT 391
HL IS + L+ L +++ L L +L + +++L+
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL-YLFANNLS 214
Query: 392 TMMKGHFSQ--NLQDLSIIN------CSIKDL 415
+ + LQ L + + C + L
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 38/220 (17%), Positives = 65/220 (29%), Gaps = 29/220 (13%)
Query: 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GE 268
+ L L L++ + + +L L N K +L G
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348
Query: 269 LIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPG 328
L +L+ L+LS+ +I L +L L+ +N S+
Sbjct: 349 LENLRELDLSHDDIETSD---------CCNLQLRNLSHLQSL------NLSYNEPLSLKT 393
Query: 329 VTVLLLEELESLK----HLQEIS--VIILTLDSLNKLK-SSSKLQSCVRRQVMGLPELSS 381
+LE L L+ L L L S S L + GLP L
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453
Query: 382 LIDISSSSLTTMMKGHFS-----QNLQDLSIINCSIKDLT 416
L ++ + + L+ L + C + +
Sbjct: 454 L-NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 46/231 (19%)
Query: 218 PPCCPRLLT-LLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYL 275
P P L + ++ +N F + L LD ++ ++ +H L L
Sbjct: 28 PGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTL 86
Query: 276 NLSNTNICELPIGIKKNLKA-------------IPAGMLSSLLSLRVFSWVPTRYAGFNY 322
L+ + + KA I L + +L Y G N+
Sbjct: 87 VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL------YLGSNH 140
Query: 323 GSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL 382
SS+ L + + L+ + N + SK + L + ++L
Sbjct: 141 ISSIK------LPKGFPTEKLKVLDF------QNNAIHYLSK------EDMSSLQQATNL 182
Query: 383 -IDISSSSLTTMMKGHF-SQNLQDLSIINCSIKDLTCI----LYIPRLRFL 427
++++ + + + G F S Q L+ + I L
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 28/219 (12%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSN 279
L L T I + + L L N +S + + + L+ L+ N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQN 162
Query: 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVP-GVTVLLLEELE 338
I + +SSL + N + + G + +
Sbjct: 163 NAI-----------HYLSKEDMSSLQQATNL----SLNLNGNDIAGIEPGAFDSAVFQSL 207
Query: 339 SLKHLQEISVII-----LTLDSLNKLK-SSSKLQSCVRRQVMGLPELSSL-IDISSSSLT 391
+ Q + VI T+ SL + GL E+S I++
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
Query: 392 TMMKGHFS--QNLQDLSIINCSIKDLTCILY-IPRLRFL 427
+ F LQ+L + + +L L + L+ L
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKL 306
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 46/244 (18%), Positives = 77/244 (31%), Gaps = 41/244 (16%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 280
L L+ I + L L N KL+ L V L L YLN
Sbjct: 63 LTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLDVTP--LTKLTYLNCDTN 116
Query: 281 NICELPIGIKKNL----------KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT 330
+ +L + L I + L L + +T
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDV---TPQTQLT 173
Query: 331 VLLLE-------ELESLKHLQEISV-----IILTLDSLNKLK----SSSKLQSCVRRQVM 374
L ++ K L ++ L L+ +L SS+KL V
Sbjct: 174 TLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI---DVT 230
Query: 375 GLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPS 434
L +L+ D S + LT + S L L I + ++ + + +L + A+ C
Sbjct: 231 PLTQLTYF-DCSVNPLTELDVSTLS-KLTTLHCIQTDLLEID-LTHNTQLIYFQAEGCRK 287
Query: 435 LEEI 438
++E+
Sbjct: 288 IKEL 291
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 33/220 (15%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 280
+L TL + I E + L L+ N ++KL + + I L +L+ S+
Sbjct: 169 QTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN-NITKLDLNQ--NIQLTFLDCSSN 222
Query: 281 NICELPIGIKKNLK----------AIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT 330
+ E+ + L + LS L +L +
Sbjct: 223 KLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ---------TDLLEIDLTH 273
Query: 331 VLLLEELESLKHLQEISVIILT-LDSLNKLK-SSSKLQSCVRRQVMGLPELSSLIDISSS 388
L + ++I + +T L L ++ + + P+L L ++++
Sbjct: 274 NTQLIYF-QAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYL-YLNNT 328
Query: 389 SLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLF 428
LT + H + L+ LS +N I+D + + IP L F
Sbjct: 329 ELTELDVSHNT-KLKSLSCVNAHIQDFSSVGKIPALNNNF 367
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 45/228 (19%)
Query: 213 SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELID 271
++ R V + +K+ QS ++ LD S N LS++ +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59
Query: 272 LQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV 331
L+ LNLS+ + E LS+L +L + N
Sbjct: 60 LELLNLSSNVLYETL----------DLESLSTLRTLDL---------NNN---------- 90
Query: 332 LLLEELESLKHLQEI--------SVIILTLDSLNKLK-SSSKLQSCVRRQVMGLPELSSL 382
++EL ++ + V + +++K+ + L
Sbjct: 91 -YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 383 IDISSSSLTTMMKGHF---SQNLQDLSIINCSIKDLTCILYIPRLRFL 427
D+ + + T+ S L+ L++ I D+ + +L+ L
Sbjct: 150 -DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 51/266 (19%), Positives = 88/266 (33%), Gaps = 45/266 (16%)
Query: 218 PPCCPRLLTLL-VRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYL 275
P TLL ++ I E F+ + L L N K+SK+H L LQ L
Sbjct: 49 PKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKL 107
Query: 276 NLSNTNICELPIGIKKNLK----------AIPAGMLSSLLSLRV---------FSWVPTR 316
+S ++ E+P + +L +P G+ S L ++ S
Sbjct: 108 YISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167
Query: 317 ----------YAGFNYGSSVPGVTVLLLEELESLKH--LQEISVIILT-LDSLNKLK-SS 362
+ +P L EL L H +Q I + L L +L
Sbjct: 168 AFDGLKLNYLRISEAKLTGIPKDLPETLNEL-HLDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 363 SKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFS-QNLQDLSIINCSIKDLTCILYI 421
++++ + LP L L + ++ L+ + G + LQ + + +I +
Sbjct: 227 NQIRMIENGSLSFLPTLREL-HLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT------KV 279
Query: 422 PRLRFLFAKDCPSLEEIIAIDLHSEP 447
F I L + P
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNP 305
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 33/207 (15%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGE---LIDLQYLNLS 278
L + ++ + F + L L S N LS L+YL+LS
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL-LEEL 337
+ + L L L + + +V L L L
Sbjct: 87 FNGVITMSSNFLG---------LEQLEHL---------DFQHSNLKQMSEFSVFLSLRNL 128
Query: 338 ESLK----HLQEISVIILT-LDSLNKLK-SSSKLQSCVRRQV-MGLPELSSLIDISSSSL 390
L H + I L SL LK + + Q + L L+ L D+S L
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQL 187
Query: 391 TTMMKGHFS--QNLQDLSIINCSIKDL 415
+ F+ +LQ L++ + + L
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSL 214
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 38/203 (18%), Positives = 68/203 (33%), Gaps = 36/203 (17%)
Query: 242 FQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELP-IGIKKNL------- 293
+L+ LD S N + + L L++L+ ++N+ ++ + +L
Sbjct: 74 DFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132
Query: 294 ------KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK----HL 343
+ G+ + L SL V + AG ++ + L L L L
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVL-----KMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 344 QEISVIILT-LDSLNKLK-SSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQN 401
+++S L SL L S + S L L L D S + + T K
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL-DYSLNHIMTSKKQELQHF 246
Query: 402 LQDLSIIN---------CSIKDL 415
L+ +N C +
Sbjct: 247 PSSLAFLNLTQNDFACTCEHQSF 269
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 41/255 (16%), Positives = 74/255 (29%), Gaps = 46/255 (18%)
Query: 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEF-ENKFFQSMHALRVLDSSQNAKLSKLHVGEGE 268
L+ P++ + Y ++EF + Q M L +LD N K+ L G
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEA-FGT 593
Query: 269 LIDLQYLNLSNTNICELPIGIKKN-------------LKAIPAGM-LSSLLSLRV----- 309
+ L L L I E+P LK IP S+ +
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653
Query: 310 --FSWVPTRYAGFNYGSSVPGVTVLLL----------EELESLKHLQEISVIILTLDSLN 357
+ + + L E + + + L + N
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS-----TIILSN-N 707
Query: 358 KLKS-SSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCS---IK 413
+ S L+++ D+ + LT++ + L LS ++ S
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTI-DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766
Query: 414 DL-TCILYIPRLRFL 427
T L +L+
Sbjct: 767 SFPTQPLNSSQLKAF 781
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 36/225 (16%), Positives = 71/225 (31%), Gaps = 47/225 (20%)
Query: 224 LLTLLVRYTMIKEFENKFFQ-SMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNI 282
+K + + L+ L + L LQ++ + +
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGL 116
Query: 283 CELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKH 342
ELP + + L +L N ++P + SL
Sbjct: 117 MELPDTM---------QQFAGLETL---------TLARNPLRALP-------ASIASLNR 151
Query: 343 LQEISVIILTLDSLNKLKS--SSKLQSCVRRQVMGLPELSSLIDISSSSLTT------MM 394
L+E L++ + +L + + GL L SL + + + + +
Sbjct: 152 LRE-----LSIRACPELTELPEPLASTDASGEHQGLVNLQSL-RLEWTGIRSLPASIANL 205
Query: 395 KGHFSQNLQDLSIINCSIKDL-TCILYIPRLRFLFAKDCPSLEEI 438
+ NL+ L I N + L I ++P+L L + C +L
Sbjct: 206 Q-----NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 9e-05
Identities = 32/160 (20%), Positives = 49/160 (30%), Gaps = 28/160 (17%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG--EGELIDLQYLNLSN 279
P L LL+ T IK + +LD N + + G + L L+
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163
Query: 280 TNICELPIGI-------------KKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSV 326
I E+ NL+ +P + S S+
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA------SGPVILDISRTRIHSL 217
Query: 327 PGVTVLLLEELESLKHLQEISVIILT-LDSLNKLKSSSKL 365
P LE+LK L+ S L L +L KL + +
Sbjct: 218 PSYG------LENLKKLRARSTYNLKKLPTLEKLVALMEA 251
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 7e-04
Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 19/191 (9%)
Query: 242 FQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300
F ++ L + + L ++ L +LQYL +SNT I LP K +
Sbjct: 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134
Query: 301 LSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLK 360
+ +++ +S G++ + + +QEI L++L
Sbjct: 135 IQDNINIHTIE-----------RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183
Query: 361 SSS--KLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFS--QNLQDLSIINCSIKDLT 416
S L+ G L DIS + + ++ + L+ S ++K L
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVIL-DISRTRIHSLPSYGLENLKKLRARS--TYNLKKLP 240
Query: 417 CILYIPRLRFL 427
+ + L
Sbjct: 241 TLEKLVALMEA 251
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 35/235 (14%), Positives = 82/235 (34%), Gaps = 48/235 (20%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 280
L+ L ++ I + +++ + L+ S N L + L ++ L+L++T
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST 117
Query: 281 NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 340
I ++ L+ L +L+V Y N ++ + L L
Sbjct: 118 QITDVT-------------PLAGLSNLQVL------YLDLNQITN--------ISPLAGL 150
Query: 341 KHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQ 400
+LQ +S+ ++ + L L +L++L + ++ +
Sbjct: 151 TNLQYLSI------GNAQVSDLTPLA--------NLSKLTTL-KADDNKISDISPLASLP 195
Query: 401 NLQDLSIINCSIKDLTCILYIPRLRFLFAKDCP--SLEEIIAIDLHSEPSEENLS 453
NL ++ + N I D++ + L + + + +L + S
Sbjct: 196 NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPS 250
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 39/208 (18%), Positives = 74/208 (35%), Gaps = 40/208 (19%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNT 280
L + + ++ + F S L+VLD S+ ++ + G L L L L+
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86
Query: 281 NICELPIGIKKNLKA-------------IPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVP 327
I L +G L + + + L +L+ N S
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL------NVAHNLIQSFK 140
Query: 328 GVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSK--LQSCVRRQVMGLPELSSLIDI 385
L E +L +L+ + + S NK++S L+ +P L+ +D+
Sbjct: 141 -----LPEYFSNLTNLEHLDL------SSNKIQSIYCTDLRVLH-----QMPLLNLSLDL 184
Query: 386 SSSSLTTMMKGHFSQ-NLQDLSIINCSI 412
S + + + G F + L L++ N
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 43/247 (17%), Positives = 82/247 (33%), Gaps = 46/247 (18%)
Query: 221 CPRLLTLLVRYTMIKEFE-NKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQY---- 274
L L V + +I+ F+ ++F ++ L LD S N K+ ++ + L +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLS 181
Query: 275 LNLSNTNICELPIGIKKNLK-------------AIPAGMLSSLLSLRVFSWVPTRYAGFN 321
L+LS + + G K ++ + + L L V V +
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 322 YGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSS 381
+L+ L +++ L L+ L +SS
Sbjct: 242 NLEKFD---------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN------CLTNVSS 286
Query: 382 LIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLT--CILYIPRLRFLFAK--------D 431
+ S ++ + ++ Q L ++NC + + RL F K D
Sbjct: 287 F-SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345
Query: 432 CPSLEEI 438
PSLE +
Sbjct: 346 LPSLEFL 352
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 41/243 (16%), Positives = 89/243 (36%), Gaps = 33/243 (13%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE--GELIDLQYLNLS 278
L L+ T + EN + L+ L+ + N + + E L +L++L+LS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS 157
Query: 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR----------YAGFNYGSSVPG 328
+ I + + L +P LS LSL +++ N+ S
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS---- 213
Query: 329 VTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELS------SL 382
++ ++ L L+ + L L + ++ L+ + + GL L+ +
Sbjct: 214 -LNVMKTCIQGLAGLE-----VHRL-VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 383 IDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAID 442
+D + + N+ S+++ +I+ + Y + L +C + +
Sbjct: 267 LDYYLDDIIDLFNCL--TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC-KFGQFPTLK 323
Query: 443 LHS 445
L S
Sbjct: 324 LKS 326
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 24/133 (18%), Positives = 40/133 (30%), Gaps = 24/133 (18%)
Query: 226 TLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNTNICE 284
+ + IK F LR +D S N ++S+L L L L L I E
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 285 LPIGIKKNL-------------KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV 331
LP + + L + L +L N ++ T
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN------LLSLYDNKLQTIAKGT- 147
Query: 332 LLLEELESLKHLQ 344
L +++ +
Sbjct: 148 --FSPLRAIQTMH 158
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 43/246 (17%), Positives = 76/246 (30%), Gaps = 47/246 (19%)
Query: 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFE-NKFFQSMHALRVLDSSQNAKLSK 261
+S + P ++ + + Y +K F Q M L +L+ N +L
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEG 344
Query: 262 LHVGEGELIDLQYLNLSNTNICELPIGIKKNLK-------------AIP----AGMLSSL 304
G I L LNL+ I E+P + IP A +S +
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404
Query: 305 LSLRVFSWVPTRYAGFNYGSSVPGVTVL-LLEELESLKHLQEISV-----------IILT 352
++ +N SV G L ++ I++ + T
Sbjct: 405 SAIDF---------SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455
Query: 353 LDSLNKLK-SSSKLQSCVRRQVMGLPE----LSSL--IDISSSSLTTMMKGHFSQNLQDL 405
L+ + + L + + E L ID+ + LT + + L L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515
Query: 406 SIINCS 411
I+ S
Sbjct: 516 VGIDLS 521
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 40/239 (16%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 280
L L + I + + +++ L L+ S N +S + L LQ L+ N
Sbjct: 111 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDI-SALSGLTSLQQLSFGNQ 166
Query: 281 NICELPIGIKKNLKA----------IPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT 330
P+ L+ I L+ L +L A N S
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESL------IATNNQISD----- 213
Query: 331 VLLLEELESLKHLQEISVI---ILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL----- 382
+ L L +L E+S+ + + +L L + + L Q+ L LS L
Sbjct: 214 ---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL-DLANNQISNLAPLSGLTKLTE 269
Query: 383 IDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIAI 441
+ + ++ ++ + L +L + ++D++ I + L +L + +I +
Sbjct: 270 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPV 327
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 34/218 (15%)
Query: 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 280
L +L+ I + + L L + N +L + L +L L+L+N
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDI-GTLASLTNLTDLDLANN 253
Query: 281 NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 340
I L P L+ L L G N S++ L L +L
Sbjct: 254 QISNLA----------PLSGLTKLTEL---------KLGANQISNISP-----LAGLTAL 289
Query: 341 KHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL-----IDISSSSLTTMMK 395
+L+ + + ++ LK+ + L + + + +SSL + ++ ++ +
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYL-TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 348
Query: 396 GHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCP 433
N+ LS + I DLT + + R+ L D
Sbjct: 349 LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 48/235 (20%)
Query: 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258
E ++ +L + S+ + ++ + IK + Q + + L + N K
Sbjct: 25 ETIKDNL-KKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-K 79
Query: 259 LSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318
L+ + L +L +L L + +L L L L+
Sbjct: 80 LTDIK-PLANLKNLGWLFLDENKVKDLS-------------SLKDLKKLKSL------SL 119
Query: 319 GFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE 378
N S + G L L L+ + + NK+ + L L +
Sbjct: 120 EHNGISDING--------LVHLPQLESLYL------GNNKITDITVLSR--------LTK 157
Query: 379 LSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCP 433
L +L + + ++ ++ LQ+L + I DL + + L L
Sbjct: 158 LDTL-SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 33/211 (15%), Positives = 69/211 (32%), Gaps = 35/211 (16%)
Query: 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNT 280
+ +L + I N Q L+ L + N ++ + L L++L+LS
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSY- 109
Query: 281 NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVP------GVTVLLL 334
N L + + L SL N ++ +T L +
Sbjct: 110 N----------YLSNLSSSWFKPLSSLTFL------NLLGNPYKTLGETSLFSHLTKLQI 153
Query: 335 EELESLKHLQEISVIILT-LDSLNKLK-SSSKLQSCVRRQVMGLPELSSLIDISSSSLTT 392
+ ++ +I L L +L+ +S LQS + + + +S L +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL-ILHMKQHIL 212
Query: 393 MMKGHFSQ-------NLQDLSIINCSIKDLT 416
+++ L+D + +L+
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELS 243
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 9e-04
Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 234 IKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNTNICELPIGIKKN 292
++ + F S L+VLD S+ ++ + G L L L L+ N
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG-N----------P 87
Query: 293 LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQE--ISVII 350
++++ G S L SL+ A +S+ + L+ L+ L ++ I
Sbjct: 88 IQSLALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKEL-NVAHNLIQSFK 140
Query: 351 L--TLDSLNKLK----SSSKLQSCVRRQVMGLPELSSL---IDISSSSLTTMMKGHFSQ- 400
L +L L+ SS+K+QS + L ++ L +D+S + + + G F +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Query: 401 NLQDLSIINCSIKDL 415
L++L++ +K +
Sbjct: 201 RLKELALDTNQLKSV 215
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 459 | |||
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.89 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.75 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.75 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.75 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.74 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.73 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.73 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.72 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.72 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.72 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.72 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.72 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.71 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.71 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.71 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.7 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.7 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.7 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.7 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.7 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.69 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.69 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.69 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.68 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.68 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.68 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.68 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.68 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.68 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.68 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.68 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.67 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.67 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.67 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.66 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.66 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.66 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.66 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.65 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.65 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.64 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.64 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.64 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.63 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.63 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.63 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.63 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.63 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.63 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.63 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.63 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.63 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.62 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.62 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.62 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.62 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.61 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.6 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.6 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.6 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.6 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.6 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.6 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.6 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.6 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.59 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.59 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.59 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.57 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.56 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.56 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.56 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.55 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.55 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.54 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.53 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.53 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.53 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.53 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.52 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.52 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.52 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.52 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.52 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.51 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.51 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.51 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.5 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.5 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.49 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.49 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.46 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.46 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.46 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.46 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.45 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.44 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.43 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.42 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.41 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.4 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.39 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.39 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.38 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.38 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.37 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.37 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.34 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.34 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.29 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.28 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.27 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.27 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.26 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.26 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.26 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.25 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.25 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.23 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.23 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.22 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.2 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.2 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.17 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.16 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.15 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.14 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.14 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.11 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.06 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.04 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.03 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.95 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.81 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.8 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.78 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.76 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.73 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.66 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.53 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.52 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.42 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.23 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.05 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.02 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.96 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.9 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.76 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.75 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.68 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.57 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.55 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.8 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.78 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 94.59 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.38 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 93.64 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 92.99 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 91.93 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 91.84 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 91.32 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 91.32 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 81.99 |
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-24 Score=223.61 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=122.3
Q ss_pred CcccccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhh
Q 012641 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSY 80 (459)
Q Consensus 1 LF~~~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy 80 (459)
||+++||+.. .++.+++++++|+++|+|+||||+++|+.|+. ++ |+.+ +.+.+..+... ..++..++.+||
T Consensus 301 Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~-~~---w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy 371 (549)
T 2a5y_B 301 FLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KT---FEKM-AQLNNKLESRG--LVGVECITPYSY 371 (549)
T ss_dssp HHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS-SS---HHHH-HHHHHHHHHHC--SSTTCCCSSSSS
T ss_pred HHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhcc-ch---HHHH-HHhHHHhhccc--HHHHHHHHhccc
Confidence 5778887654 25789999999999999999999999999987 33 5543 33333222111 236899999999
Q ss_pred cCCCchhHHHHhh-----------hhcccCCCCccCHHHHHHHHHHc--CCCcCCCchHHHHHHHHHHHHHHHHccccce
Q 012641 81 DRLTSETHKTCFL-----------YCSLFPRSQIIMKDELIELWIGE--GLLRDSHNIAAAKREGNLILESLKLACLLEE 147 (459)
Q Consensus 81 ~~L~~~~lk~cfl-----------~~~~fp~~~~i~~~~li~~Wia~--g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~ 147 (459)
++||. ++|.||+ |||+||+++.|+ +++|+|+ ||+.......+.+++++ ||++|+++||++.
T Consensus 372 ~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~ 445 (549)
T 2a5y_B 372 KSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLS 445 (549)
T ss_dssp SSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSE
T ss_pred ccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeE
Confidence 99999 7999999 999999999998 8999999 99987643456678888 9999999999998
Q ss_pred ecccCccCcEeehHHHHHHHHHHHhccC
Q 012641 148 VEVNNSEDFFKMHDILRDMALWIASSQG 175 (459)
Q Consensus 148 ~~~~~~~~~~~~hdli~~l~~~~~~~~~ 175 (459)
...+ ...+|+|||++|++|+.++.+++
T Consensus 446 ~~~~-~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 446 GKRM-PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp EECS-SSCEEECCHHHHHHHHTTSCTHH
T ss_pred ecCC-CceEEEeChHHHHHHHHHHHHHH
Confidence 7542 36789999999999998876553
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=174.11 Aligned_cols=212 Identities=16% Similarity=0.179 Sum_probs=149.5
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
..++.|.+.++ .+..+|+.+..+++|++|++++|.+..+|.. ++.+++|++|++++| .+..+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 57888889888 8888887788889999999999888888876 788899999999999 88888988999999999999
Q ss_pred CCCC-CcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhh
Q 012641 278 SNTN-ICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSL 356 (459)
Q Consensus 278 ~~~~-l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 356 (459)
++|+ +..+|..+.. ..++.. +.++++|++|++++|.+ . ..+..++++++|+.|+++.+....
T Consensus 158 ~~n~~~~~~p~~~~~--~~~~~~-~~~l~~L~~L~L~~n~l------------~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS--TDASGE-HQGLVNLQSLRLEWTGI------------R-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE--EC-CCC-EEESTTCCEEEEEEECC------------C-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh--ccchhh-hccCCCCCEEECcCCCc------------C-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 9864 4566543221 011122 44588888888888876 2 356678888888888887654432
Q ss_pred hhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecC-CCCCCcc-cccCCCcceeecccCcc
Q 012641 357 NKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKDLTC-ILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 357 ~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~lp~-l~~l~~L~~L~l~~c~~ 434 (459)
++........|+.|+++.+.+... .|.++ ..+++|++|++++| ....+|. ++.+++|++|+|++|+.
T Consensus 221 --l~~~l~~l~~L~~L~Ls~n~~~~~-------~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 221 --LGPAIHHLPKLEELDLRGCTALRN-------YPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp --CCGGGGGCTTCCEEECTTCTTCCB-------CCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred --CchhhccCCCCCEEECcCCcchhh-------hHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 222222223455555543322111 12222 34778888888888 6667774 78888888888888888
Q ss_pred hhhhcc
Q 012641 435 LEEIIA 440 (459)
Q Consensus 435 l~~i~~ 440 (459)
+..+|.
T Consensus 290 ~~~iP~ 295 (328)
T 4fcg_A 290 LSRLPS 295 (328)
T ss_dssp CCCCCG
T ss_pred hhhccH
Confidence 777776
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=168.37 Aligned_cols=234 Identities=16% Similarity=0.143 Sum_probs=155.7
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
....+.....+|... .++++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..|..+++|++|++++| .+
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YL 112 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred eeCCCCCcccccccc-cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cC
Confidence 334455666666532 257888888888 8888764 6788888999999888888777666888889999999988 88
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCH--HHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCC
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPI--GIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYG 323 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 323 (459)
+.+|.. ++.+++|++|++++|.+..+|. .+..+ +..++...+.++++|++|++++|.+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l------ 186 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL------ 186 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC------
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc------
Confidence 888766 7888889999999888887765 22222 2223222255556666666665554
Q ss_pred CCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcccc--------------Cccc
Q 012641 324 SSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDI--------------SSSS 389 (459)
Q Consensus 324 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~--------------~l~~ 389 (459)
....+..++++++|+.|++..+....+... .......|+.|+++.+.+..+... ++..
T Consensus 187 ------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 187 ------QSYEPKSLKSIQNVSHLILHMKQHILLLEI--FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp ------CEECTTTTTTCSEEEEEEEECSCSTTHHHH--HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ------CccCHHHHhccccCCeecCCCCccccchhh--hhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 333456677777777777765544333221 112234567777755555443211 1111
Q ss_pred ----------cCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCc
Q 012641 390 ----------LTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 390 ----------~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~ 433 (459)
.|.++ ..+++|++|++++|.++.+|. ++.+++|++|++++++
T Consensus 259 ~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 259 VKITDESLFQVMKLL--NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CBCCHHHHHHHHHHH--HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCcchhhhHHHH--hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 01111 357899999999998889886 5889999999999865
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=169.77 Aligned_cols=222 Identities=15% Similarity=0.133 Sum_probs=142.3
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+..+..+|.... ..++.|.+.+| .+..++ ..+.++++|++|++++|.+..+++..|.++++|++|+|++| .
T Consensus 47 ~v~c~~~~l~~iP~~~~-~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS-TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC-TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCCC-CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-c
Confidence 45566667777775432 68999999999 888876 67789999999999999999998888999999999999999 9
Q ss_pred cccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
++.+|. .+..+++|++|++++|.+..+|.. .+.++++|++|++.+|... .......+
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-----------~~~~l~~L~~L~l~~~~~l-----------~~i~~~~~ 181 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSY-----------AFNRIPSLRRLDLGELKRL-----------SYISEGAF 181 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTT-----------TTTTCTTCCEEECCCCTTC-----------CEECTTTT
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHH-----------HhhhCcccCEeCCCCCCCc-----------ceeCcchh
Confidence 999976 589999999999999999887652 1555566666666554321 11122234
Q ss_pred hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCc-----------cccCcccc------CCccCccccc
Q 012641 338 ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL-----------IDISSSSL------TTMMKGHFSQ 400 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l-----------~~~~l~~~------~~~i~~~~l~ 400 (459)
.++++|+.|+++.+....+ +... ....|+.|+++.+.+..+ +.+++... +..+ ..++
T Consensus 182 ~~l~~L~~L~L~~n~l~~~---~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~ 255 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREI---PNLT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF--DNLQ 255 (440)
T ss_dssp TTCSSCCEEECTTSCCSSC---CCCT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS--TTCT
T ss_pred hcccccCeecCCCCcCccc---cccC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh--cCCC
Confidence 4555555555543322222 1111 111234444433332222 11111110 1111 2356
Q ss_pred CccEEEEecCCCCCCcc--cccCCCcceeecccC
Q 012641 401 NLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDC 432 (459)
Q Consensus 401 ~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c 432 (459)
+|+.|+|++|.++.+|. +..+++|+.|+|+++
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 77777777776666664 566777777777663
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=164.41 Aligned_cols=181 Identities=20% Similarity=0.243 Sum_probs=145.3
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCc
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~ 300 (459)
.++++.|++.+|.+..+|.. +..+++|++|++++| .+..+|..++.+++|++|++++|.+..+|.+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~------------ 145 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPAS------------ 145 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGG------------
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHH------------
Confidence 47789999999999999988 778999999999999 9999999999999999999999999887764
Q ss_pred CCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh---------hhccccCceeEEEEeChhhhhhhhcchhHHhhhhh
Q 012641 301 LSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE---------LESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRR 371 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~---------l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~ 371 (459)
++++++|++|++++|... ...+.. ++.+++|+.|++..+... .++........|+.
T Consensus 146 l~~l~~L~~L~L~~n~~~------------~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 146 IASLNRLRELSIRACPEL------------TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKS 210 (328)
T ss_dssp GGGCTTCCEEEEEEETTC------------CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCTTCCE
T ss_pred HhcCcCCCEEECCCCCCc------------cccChhHhhccchhhhccCCCCCEEECcCCCcC---cchHhhcCCCCCCE
Confidence 788999999999998762 233333 445999999999877554 33333333446777
Q ss_pred hhccCCCCCCccccCccccCCccCcccccCccEEEEecC-CCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 372 QVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 372 L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
|+++.+.+..+. ..+ ..+++|++|++++| ....+|. ++.+++|++|++++|..+..+|.
T Consensus 211 L~L~~N~l~~l~--------~~l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 211 LKIRNSPLSALG--------PAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp EEEESSCCCCCC--------GGG--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred EEccCCCCCcCc--------hhh--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 777666665442 221 34889999999999 6667775 89999999999999988887775
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-18 Score=169.91 Aligned_cols=222 Identities=15% Similarity=0.102 Sum_probs=139.8
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+..+..+|... ..+++.|.+.+| .+..++ ..+..+++|++|++++|.+..+++..|.++++|++|+|++| .
T Consensus 58 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI-PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-W 134 (452)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEEECCCCcCccCCCC-CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-c
Confidence 4556666777777533 268999999999 888874 66789999999999999999888777999999999999999 9
Q ss_pred ccccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
+..+|.. ++.+++|++|++++|.+..+|.. .+.++++|++|++++|... .......+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~l~~~~~l-----------~~i~~~~~ 192 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSY-----------AFNRVPSLMRLDLGELKKL-----------EYISEGAF 192 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTT-----------TTTTCTTCCEEECCCCTTC-----------CEECTTTT
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHh-----------HHhcCCcccEEeCCCCCCc-----------cccChhhc
Confidence 9998755 88899999999999999887752 1555555555555553321 11122234
Q ss_pred hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCc-----------cccCcccc------CCccCccccc
Q 012641 338 ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL-----------IDISSSSL------TTMMKGHFSQ 400 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l-----------~~~~l~~~------~~~i~~~~l~ 400 (459)
..+++|+.|+++.+....+. ... ....|+.|+++.+.+..+ ..+++.+. +..+ ..++
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~---~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~ 266 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMP---NLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF--DGLA 266 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCC---CCT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT--TTCT
T ss_pred cCCCCCCEEECCCCcccccc---ccc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh--cCCC
Confidence 44555555555333222211 111 112234444433332222 11111110 1111 2356
Q ss_pred CccEEEEecCCCCCCcc--cccCCCcceeecccC
Q 012641 401 NLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDC 432 (459)
Q Consensus 401 ~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c 432 (459)
+|+.|+|++|.++.+|. +..+++|+.|+|+++
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 77777777776666663 566777777777664
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=158.68 Aligned_cols=216 Identities=16% Similarity=0.046 Sum_probs=142.7
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCC-CCCCCcceeeeeeccccccc---chhHHhcCCCccEEEccC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEF---ENKFFQSMHALRVLDSSQ 255 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~Lr~L~L~~ 255 (459)
.+...+.....+|... .+++++|.+.++ .+..+|.. +..+++|++|++++|.+..+ +.. +..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCC
Confidence 3455566677776533 368999999999 89998754 68999999999999977655 455 77899999999999
Q ss_pred CCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchh
Q 012641 256 NAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE 335 (459)
Q Consensus 256 ~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
| .+..+|..+..+++|++|++++|.+..+|. +.. +.++++|++|++++|.+ ....+.
T Consensus 88 n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~-~~~l~~L~~L~l~~n~l------------~~~~~~ 144 (306)
T 2z66_A 88 N-GVITMSSNFLGLEQLEHLDFQHSNLKQMSE---------FSV-FLSLRNLIYLDISHTHT------------RVAFNG 144 (306)
T ss_dssp C-SEEEEEEEEETCTTCCEEECTTSEEESSTT---------TTT-TTTCTTCCEEECTTSCC------------EECSTT
T ss_pred C-ccccChhhcCCCCCCCEEECCCCccccccc---------chh-hhhccCCCEEECCCCcC------------Cccchh
Confidence 9 999999999999999999999999887753 012 77788888888888776 334455
Q ss_pred hhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCC
Q 012641 336 ELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDL 415 (459)
Q Consensus 336 ~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~l 415 (459)
.+..+++|+.|++..+..... .++........|+.|+++.+.+..+.. .++ ..+++|++|++++|.+..+
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~--~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQCQLEQLSP-------TAF--NSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSCCCEECT-------TTT--TTCTTCCEEECTTSCCSBC
T ss_pred hcccCcCCCEEECCCCccccc-cchhHHhhCcCCCEEECCCCCcCCcCH-------HHh--cCCCCCCEEECCCCccCcc
Confidence 567777777777753322110 012222222345555554444433211 111 1245555555555544444
Q ss_pred cc--cccCCCcceeeccc
Q 012641 416 TC--ILYIPRLRFLFAKD 431 (459)
Q Consensus 416 p~--l~~l~~L~~L~l~~ 431 (459)
+. +..+++|++|++++
T Consensus 215 ~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp CSGGGTTCTTCCEEECTT
T ss_pred ChhhccCcccCCEeECCC
Confidence 42 44555555555555
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=158.21 Aligned_cols=226 Identities=14% Similarity=0.132 Sum_probs=159.6
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+.....+|... .+.++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 36 l~~~~~~l~~lp~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 112 (330)
T 1xku_A 36 VQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QL 112 (330)
T ss_dssp EECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCccccCccC-CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cC
Confidence 344444555555422 257888999998 8888764 6788999999999999888886555889999999999999 88
Q ss_pred ccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc
Q 012641 260 SKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 339 (459)
Q Consensus 260 ~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (459)
+.+|..+. ++|++|++++|.+..+|... +.++++|++|++++|.... ....+..+.+
T Consensus 113 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~-----------~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~ 169 (330)
T 1xku_A 113 KELPEKMP--KTLQELRVHENEITKVRKSV-----------FNGLNQMIVVELGTNPLKS----------SGIENGAFQG 169 (330)
T ss_dssp SBCCSSCC--TTCCEEECCSSCCCBBCHHH-----------HTTCTTCCEEECCSSCCCG----------GGBCTTGGGG
T ss_pred CccChhhc--ccccEEECCCCcccccCHhH-----------hcCCccccEEECCCCcCCc----------cCcChhhccC
Confidence 88887766 78999999999888877542 6778888888888887632 2345567778
Q ss_pred cccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCC-----------CccccCcccc------CCccCcccccCc
Q 012641 340 LKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELS-----------SLIDISSSSL------TTMMKGHFSQNL 402 (459)
Q Consensus 340 L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~-----------~l~~~~l~~~------~~~i~~~~l~~L 402 (459)
+++|+.|++..+....+ +... ...|+.|+++.+.+. .|+.+++... +.++ ..+++|
T Consensus 170 l~~L~~L~l~~n~l~~l---~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L 242 (330)
T 1xku_A 170 MKKLSYIRIADTNITTI---PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--ANTPHL 242 (330)
T ss_dssp CTTCCEEECCSSCCCSC---CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--GGSTTC
T ss_pred CCCcCEEECCCCccccC---Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--cCCCCC
Confidence 88888888765433322 2111 134555655433332 2333333321 1122 347899
Q ss_pred cEEEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 403 QDLSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 403 ~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
++|++++|.+..+|. +..+++|++|++++ +.++.++.
T Consensus 243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~ 280 (330)
T 1xku_A 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGS 280 (330)
T ss_dssp CEEECCSSCCSSCCTTTTTCSSCCEEECCS-SCCCCCCT
T ss_pred CEEECCCCcCccCChhhccCCCcCEEECCC-CcCCccCh
Confidence 999999998888885 88899999999998 56888776
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=165.51 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=49.1
Q ss_pred ccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L 275 (459)
.+++.+.+.++ .++.+|+. +..+++|++|++++|.+..+++..|..+++|++|++++| .+..+| ..++.+++|++|
T Consensus 45 ~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEE
Confidence 45556666555 55555432 344556666666666555555544556666666666666 555553 335556666666
Q ss_pred EcCCCCCcccCH
Q 012641 276 NLSNTNICELPI 287 (459)
Q Consensus 276 ~l~~~~l~~lp~ 287 (459)
++++|.+..+|.
T Consensus 123 ~L~~n~l~~l~~ 134 (390)
T 3o6n_A 123 VLERNDLSSLPR 134 (390)
T ss_dssp ECCSSCCCCCCT
T ss_pred ECCCCccCcCCH
Confidence 666665555443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=157.58 Aligned_cols=197 Identities=17% Similarity=0.206 Sum_probs=156.0
Q ss_pred ccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCC
Q 012641 194 TASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQ 273 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~ 273 (459)
...+++++.|.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .++.+++|+
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCC-CccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCC
Confidence 345678999999999 88888 578889999999999999888887 899999999999999 898887 599999999
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeCh
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTL 353 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 353 (459)
+|++++|.+..+|. +.++++|++|++++|.+.. ...++.+++|+.|+++.+..
T Consensus 111 ~L~l~~n~l~~~~~-------------l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-------------LAGLSNLQVLYLDLNQITN--------------ISPLAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EEECTTSCCCCCGG-------------GTTCTTCCEEECCSSCCCC--------------CGGGGGCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCchh-------------hcCCCCCCEEECCCCccCc--------------CccccCCCCccEEEccCCcC
Confidence 99999999988764 7889999999999998632 12388899999999976544
Q ss_pred hhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCc
Q 012641 354 DSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCP 433 (459)
Q Consensus 354 ~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~ 433 (459)
..+..+ .....|+.|+++.+.+..+.. ...+++|++|++++|.+..++.+..+++|++|+++++
T Consensus 164 ~~~~~l----~~l~~L~~L~l~~n~l~~~~~-----------l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N- 227 (308)
T 1h6u_A 164 SDLTPL----ANLSKLTTLKADDNKISDISP-----------LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ- 227 (308)
T ss_dssp CCCGGG----TTCTTCCEEECCSSCCCCCGG-----------GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE-
T ss_pred CCChhh----cCCCCCCEEECCCCccCcChh-----------hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC-
Confidence 433221 222356777776666654421 2348899999999998888888999999999999984
Q ss_pred chhhhc
Q 012641 434 SLEEII 439 (459)
Q Consensus 434 ~l~~i~ 439 (459)
.+...+
T Consensus 228 ~i~~~~ 233 (308)
T 1h6u_A 228 TITNQP 233 (308)
T ss_dssp EEECCC
T ss_pred eeecCC
Confidence 455533
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-17 Score=153.53 Aligned_cols=218 Identities=16% Similarity=0.162 Sum_probs=162.9
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+...+.+...+|.. ..+++++|.+.++ .+..++ ..+..+++|++|++++|.+..+++..+..+++|++|++++|..
T Consensus 15 ~~~c~~~~l~~ip~~-~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG-IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTT-CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcC-CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 344556666666643 2468999999999 888886 4578899999999999988888666699999999999999932
Q ss_pred cccc-cccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKL-HVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~l-P~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
+..+ |..++.+++|++|++++|.+..++. .. +.++++|++|++++|.+ .......+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~-~~~l~~L~~L~l~~n~l------------~~~~~~~~ 149 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGP----------GL-FRGLAALQYLYLQDNAL------------QALPDDTF 149 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------TT-TTTCTTCCEEECCSSCC------------CCCCTTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECH----------hH-hhCCcCCCEEECCCCcc------------cccCHhHh
Confidence 8888 7789999999999999999887643 23 88999999999999987 33334557
Q ss_pred hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc
Q 012641 338 ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC 417 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~ 417 (459)
+.+++|+.|+++.+....+.. ........|+.|+++.+.+..+. +.++ ..+++|+.|++++|.+..+|.
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-------~~~~--~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVH-------PHAF--RDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEEC-------TTTT--TTCTTCCEEECCSSCCSCCCH
T ss_pred ccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCCcccccC-------HhHc--cCcccccEeeCCCCcCCcCCH
Confidence 889999999997553332211 01111234566666555544331 2222 247899999999998888874
Q ss_pred --cccCCCcceeecccCc
Q 012641 418 --ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 418 --l~~l~~L~~L~l~~c~ 433 (459)
+..+++|++|++++++
T Consensus 219 ~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHHTTCTTCCEEECCSSC
T ss_pred HHcccCcccCEEeccCCC
Confidence 8899999999999854
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=158.70 Aligned_cols=227 Identities=14% Similarity=0.167 Sum_probs=153.2
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+.....+|... .+.++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 38 l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 114 (332)
T 2ft3_A 38 VQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HL 114 (332)
T ss_dssp EECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CC
T ss_pred EECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cC
Confidence 334444555555432 357888888888 777775 46778888888888888887776666888888888888888 88
Q ss_pred ccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc
Q 012641 260 SKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 339 (459)
Q Consensus 260 ~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (459)
..+|..+. ++|++|++++|.+..+|.. .+.++++|++|++++|.+.. ....+..+..
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~-----------~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~ 171 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNRIRKVPKG-----------VFSGLRNMNCIEMGGNPLEN----------SGFEPGAFDG 171 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSCCCCCCSG-----------GGSSCSSCCEEECCSCCCBG----------GGSCTTSSCS
T ss_pred CccCcccc--ccCCEEECCCCccCccCHh-----------HhCCCccCCEEECCCCcccc----------CCCCcccccC
Confidence 88887766 7888888888888776542 27889999999998887632 1234445555
Q ss_pred cccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCC-----------CccccCcccc--CCccC--cccccCccE
Q 012641 340 LKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELS-----------SLIDISSSSL--TTMMK--GHFSQNLQD 404 (459)
Q Consensus 340 L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~-----------~l~~~~l~~~--~~~i~--~~~l~~L~~ 404 (459)
+ +|+.|+++.+.... ++... ...|+.|+++.+.+. .|..+++.+. ....+ ...+++|++
T Consensus 172 l-~L~~L~l~~n~l~~---l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTG---IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp C-CCSCCBCCSSBCSS---CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred C-ccCEEECcCCCCCc---cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 5 67777765443322 22111 134555655443332 2222333321 11111 135789999
Q ss_pred EEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 405 LSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 405 L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
|++++|.+..+|. ++.+++|++|++++ +.++.++.
T Consensus 246 L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~ 281 (332)
T 2ft3_A 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVGV 281 (332)
T ss_dssp EECCSSCCCBCCTTGGGCTTCCEEECCS-SCCCBCCT
T ss_pred EECCCCcCeecChhhhcCccCCEEECCC-CCCCccCh
Confidence 9999998889986 89999999999998 56888776
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=162.34 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=98.3
Q ss_pred EEEecCCCcccccc--ccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCC
Q 012641 180 LVFQETDKSIKVQE--TASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQN 256 (459)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 256 (459)
.+...+.....+|. ...+++++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..++.+++|++|++++|
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 34444445555554 345678999999998 888876 36788999999999999888888877889999999999999
Q ss_pred CCcccccccc-cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 257 AKLSKLHVGE-GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 257 ~~i~~lP~~i-~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
.+..+|..+ +.+++|++|++++|.+..++.. . +.++++|++|++++|.+.
T Consensus 128 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~-~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 128 -DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD----------T-FQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT----------T-TSSCTTCCEEECCSSCCS
T ss_pred -ccCcCCHHHhcCCCCCcEEECCCCccCccChh----------h-ccCCCCCCEEECCCCcCC
Confidence 899998774 8899999999999988876432 2 677777777777777654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=157.27 Aligned_cols=226 Identities=16% Similarity=0.222 Sum_probs=122.8
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
+...+.....++.....++++.+.+.++ .+..+++ +..+++|++|++++|.+..++. +..+++|++|++++| .+.
T Consensus 49 L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~ 123 (347)
T 4fmz_A 49 LVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NIS 123 (347)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCC
T ss_pred EEEeCCccccchhhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-ccc
Confidence 3334445555555566677788888777 7777743 7777788888888777766653 777788888888887 777
Q ss_pred cccccccCCCCCCEEEcCCCC-CcccCHHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCC
Q 012641 261 KLHVGEGELIDLQYLNLSNTN-ICELPIGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVP 327 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 327 (459)
.+|. +..+++|++|++++|. +..++. +..+ +..++. +.++++|++|++++|.+..
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-------- 191 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-------- 191 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC--------
T ss_pred Cchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc--------
Confidence 7766 7777777777777774 333322 2211 111221 3344444445444444321
Q ss_pred CccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcc---------ccCcccc-CCccC-c
Q 012641 328 GVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLI---------DISSSSL-TTMMK-G 396 (459)
Q Consensus 328 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~---------~~~l~~~-~~~i~-~ 396 (459)
...+..+++|+.|++..+....... ......|+.|+++.+.+..+. .+++... -..++ .
T Consensus 192 ------~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 261 (347)
T 4fmz_A 192 ------ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAV 261 (347)
T ss_dssp ------CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred ------cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhH
Confidence 1114444455555443322221111 111223444444333332221 1222110 00011 1
Q ss_pred ccccCccEEEEecCCCCCCcccccCCCcceeecccCc
Q 012641 397 HFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCP 433 (459)
Q Consensus 397 ~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~ 433 (459)
..+++|++|++++|.+..++.+..+++|++|++++|.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred hcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc
Confidence 3466777777777766677667777777777777753
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=155.51 Aligned_cols=219 Identities=15% Similarity=0.186 Sum_probs=137.6
Q ss_pred ccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCC
Q 012641 192 QETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELID 271 (459)
Q Consensus 192 ~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~ 271 (459)
.....+++++++.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .++.+++
T Consensus 38 ~~~~~l~~L~~L~l~~~-~i~~~-~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 38 VTQEELESITKLVVAGE-KVASI-QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTN 111 (347)
T ss_dssp ECHHHHTTCSEEECCSS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTT
T ss_pred ccchhcccccEEEEeCC-ccccc-hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCc
Confidence 34445688999999999 88888 568889999999999999988887 899999999999999 999887 4999999
Q ss_pred CCEEEcCCCCCcccCHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 272 LQYLNLSNTNICELPIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 272 L~~L~l~~~~l~~lp~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
|++|++++|.+..+|. +..+ +..++ . +.++++|++|++.+|... ....+.
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~-~~~l~~L~~L~l~~~~~~--------------~~~~~~ 174 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-P-LSNMTGLNYLTVTESKVK--------------DVTPIA 174 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-G-GTTCTTCCEEECCSSCCC--------------CCGGGG
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-c-hhhCCCCcEEEecCCCcC--------------Cchhhc
Confidence 9999999999998875 2221 11111 1 444555555555544431 111255
Q ss_pred ccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCC---------ccccCcccc--CCccCcccccCccEEEE
Q 012641 339 SLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSS---------LIDISSSSL--TTMMKGHFSQNLQDLSI 407 (459)
Q Consensus 339 ~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~---------l~~~~l~~~--~~~i~~~~l~~L~~L~L 407 (459)
.+++|+.|+++.+....+..+ .....|+.++++.+.+.. |+.+++.+. ....+...+++|++|++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 250 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISPL----ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI 250 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGGG----GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred cCCCCCEEEccCCcccccccc----cCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEEC
Confidence 666666666643332222211 112234445443333222 222222221 01111234566777777
Q ss_pred ecCCCCCCcccccCCCcceeecccCcchhhh
Q 012641 408 INCSIKDLTCILYIPRLRFLFAKDCPSLEEI 438 (459)
Q Consensus 408 ~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i 438 (459)
++|.+..++.+..+++|++|++++| .+.++
T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 251 GTNQISDINAVKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred CCCccCCChhHhcCCCcCEEEccCC-ccCCC
Confidence 7666666666666777777777664 44444
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=165.63 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=108.9
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+..+..+|... ...++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..|..+++|++|+|++| .
T Consensus 15 ~v~c~~~~l~~ip~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-R 91 (477)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-c
Confidence 4555666677666532 367899999998 888875 56788999999999999888876666889999999999999 8
Q ss_pred ccccccc-ccCCCCCCEEEcCCCCCcccC-HHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC
Q 012641 259 LSKLHVG-EGELIDLQYLNLSNTNICELP-IGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS 324 (459)
Q Consensus 259 i~~lP~~-i~~L~~L~~L~l~~~~l~~lp-~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 324 (459)
+..+|.. ++.+++|++|++++|.+..++ ..+..+ +..++...+.++++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------ 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT------ 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc------
Confidence 8888764 688999999999999887664 233322 23333333666677777777666652
Q ss_pred CCCCccccchhhhhccccCceeEEEE
Q 012641 325 SVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 325 ~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
......+.++++|+.|++..
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEES
T ss_pred ------ccChhHhcccCCCcEEeCCC
Confidence 22233455555566555554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=169.78 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=102.8
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+.++..+|.... +.++.|.+.++ .+..+++ .+.++++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus 15 ~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~ 91 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP-SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-P 91 (606)
T ss_dssp EEECTTSCCSSCCTTSC-TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred ceEccCCCcccCCCCCC-CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-c
Confidence 45566777777776433 78999999999 8888764 7889999999999999888887777899999999999999 8
Q ss_pred cccc-cccccCCCCCCEEEcCCCCCcccC-HHHHHh------------hh--hCCCCcCCCCCCCCEeeecCCCC
Q 012641 259 LSKL-HVGEGELIDLQYLNLSNTNICELP-IGIKKN------------LK--AIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 259 i~~l-P~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L------------l~--~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..+ |..++.+++|++|++++|.+..+| ..++.+ +. .+|.. ++++++|++|++++|.+
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcc
Confidence 8887 888999999999999999988776 333332 22 24444 55555555555555544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-17 Score=150.65 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=95.0
Q ss_pred ccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L 275 (459)
..++.|.+.++ .+..+++ .+..+++|++|++++|.+..++...|..+++|++|++++| .+..+|. .++.+++|++|
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEE
Confidence 34555555555 5555542 3455555555555555555555554555555555555555 5555543 23555555555
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhh
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDS 355 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 355 (459)
++++|.+..+|.. .+.++++|++|++++|.+. ......++.+++|+.|++.
T Consensus 115 ~l~~n~l~~~~~~-----------~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~------ 165 (270)
T 2o6q_A 115 RLDRNQLKSLPPR-----------VFDSLTKLTYLSLGYNELQ------------SLPKGVFDKLTSLKELRLY------ 165 (270)
T ss_dssp ECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECC------
T ss_pred ECCCCccCeeCHH-----------HhCcCcCCCEEECCCCcCC------------ccCHhHccCCcccceeEec------
Confidence 5555555544321 1455555555555555541 1122224455555555543
Q ss_pred hhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCc
Q 012641 356 LNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 356 ~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~ 433 (459)
.+.+..+... .+ ..+++|++|++++|.++.+|. +..+++|++|++++++
T Consensus 166 --------------------~n~l~~~~~~-------~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 166 --------------------NNQLKRVPEG-------AF--DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --------------------SSCCSCCCTT-------TT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------------------CCcCcEeChh-------Hh--ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 2322222110 01 236788888888887777774 6778888888887643
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=165.20 Aligned_cols=109 Identities=22% Similarity=0.226 Sum_probs=80.2
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
..+...+..+..+|... .+.++.|.+.+| .+..++ ..+..+++|++|++++|.+..++++.|..+++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence 34555666666666533 267888888888 777775 46778888888888888887776666888888888888888
Q ss_pred CcccccccccCCCCCCEEEcCCCCCcccC--HHHHHh
Q 012641 258 KLSKLHVGEGELIDLQYLNLSNTNICELP--IGIKKN 292 (459)
Q Consensus 258 ~i~~lP~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L 292 (459)
.++.+|.. .+++|++|++++|.+..+| ..++.+
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l 145 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNL 145 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhccc
Confidence 78888776 7788888888888777654 455544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=148.50 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=164.2
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+.+.+.....+|... ...++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PI 88 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred EEecCCCccccCCCC-CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-cc
Confidence 444555666666532 257999999999 8888864 7888999999999999999888877999999999999999 88
Q ss_pred cccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 260 SKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 260 ~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
..+| ..++.+++|++|++++|.+..++. .. ++++++|++|++++|.+. ....+..++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~-~~~l~~L~~L~l~~n~l~-----------~~~l~~~~~ 146 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLEN----------FP-IGHLKTLKELNVAHNLIQ-----------SFKLPEYFS 146 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTT----------CC-CTTCTTCCEEECCSSCCC-----------CCCCCGGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCc----------hh-cccCCCCCEEECcCCccc-----------eecCchhhc
Confidence 8875 678999999999999999887653 12 889999999999999873 223577899
Q ss_pred ccccCceeEEEEeChhhhhhhhcchhHHhhhh----hhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCC
Q 012641 339 SLKHLQEISVIILTLDSLNKLKSSSKLQSCVR----RQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKD 414 (459)
Q Consensus 339 ~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~----~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~ 414 (459)
++++|+.|+++.+....+.. ........++ .|+++.+.+..+.. .. ....+|+.|++++|.++.
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ls~n~l~~~~~--------~~--~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQP--------GA--FKEIRLKELALDTNQLKS 214 (276)
T ss_dssp GCTTCCEEECCSSCCCEECG--GGGHHHHTCTTCCEEEECCSSCCCEECT--------TS--SCSCCEEEEECCSSCCSC
T ss_pred cCCCCCEEECCCCCCCcCCH--HHhhhhhhccccceeeecCCCcccccCc--------cc--cCCCcccEEECCCCceee
Confidence 99999999997654332210 1111222333 34445555543321 11 113489999999998888
Q ss_pred Ccc--cccCCCcceeecc------cCcchhhh
Q 012641 415 LTC--ILYIPRLRFLFAK------DCPSLEEI 438 (459)
Q Consensus 415 lp~--l~~l~~L~~L~l~------~c~~l~~i 438 (459)
+|. +..+++|++|+++ .|+.++.+
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred cCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 885 6889999999999 56655543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-17 Score=169.20 Aligned_cols=125 Identities=20% Similarity=0.233 Sum_probs=88.8
Q ss_pred EEecCCCcccccc--ccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 181 VFQETDKSIKVQE--TASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 181 ~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
+...+.....+|. ...++.++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..|+.+++|++|+|++|
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 133 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN- 133 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-
Confidence 3334444444443 234567888888888 7777653 6777888888888888777777776788888888888888
Q ss_pred Ccccccccc-cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 258 KLSKLHVGE-GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 258 ~i~~lP~~i-~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
.+..+|..+ +.+++|++|++++|.+..+|. .. ++++++|++|++++|.+.
T Consensus 134 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~-~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIED----------DT-FQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCT----------TT-TTTCTTCCEEECTTSCCS
T ss_pred CCCCCCHHHhccCCCCCEEEeeCCcCCCCCh----------hh-hhcCCcCcEEECcCCCCC
Confidence 788887664 788888888888887776543 22 677777777777777654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=163.45 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=66.5
Q ss_pred EecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 182 FQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
-..+..+..+|.... +++++|.++++ .+..++ ..+..+++|++|++++|.+..+++..|..+++|++|++++| .++
T Consensus 6 ~ls~n~l~~ip~~~~-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 82 (520)
T 2z7x_B 6 DRSKNGLIHVPKDLS-QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLV 82 (520)
T ss_dssp ECTTSCCSSCCCSCC-TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCC
T ss_pred ecCCCCccccccccc-ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-cee
Confidence 334445555554322 56777777777 666654 34566777777777777666665555777777777777777 666
Q ss_pred cccccccCCCCCCEEEcCCCCCcc--cCHHHHHh
Q 012641 261 KLHVGEGELIDLQYLNLSNTNICE--LPIGIKKN 292 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L 292 (459)
.+|.. .+++|++|++++|.+.. +|..++.+
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred ecCcc--ccCCccEEeccCCccccccchhhhccC
Confidence 66665 66667777777666654 34555443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-17 Score=163.09 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=102.2
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCcccc-CCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSL-SPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+.+.+.+...+|. -.++++.|.+.++ .+..+ +..+.++++|++|++++|.+. .+++..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n- 89 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-
Confidence 45566667777776 2378999999999 88876 467889999999999999765 676666899999999999999
Q ss_pred Ccccc-cccccCCCCCCEEEcCCCCCcc-cCHH--HHHh------------hhhC-CCCcCCCCCCCCEeeecCCCCC
Q 012641 258 KLSKL-HVGEGELIDLQYLNLSNTNICE-LPIG--IKKN------------LKAI-PAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 258 ~i~~l-P~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L------------l~~l-p~~~i~~L~~L~~L~l~~~~~~ 318 (459)
.+..+ |..++.+++|++|++++|.+.. +|.. ++.+ +..+ |..++.++++|++|++++|.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88776 7889999999999999998874 3332 3332 3333 4333667777777777777653
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-18 Score=160.69 Aligned_cols=199 Identities=17% Similarity=0.102 Sum_probs=112.5
Q ss_pred ccccccceEEEeec-CCCcc-ccCCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCC
Q 012641 194 TASWNEAVRVSLWR-SPSID-SLSPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGEL 269 (459)
Q Consensus 194 ~~~~~~~r~l~l~~-~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L 269 (459)
...++.++.|.+.+ + .+. .+|..+..+++|++|++++|.+. .+|.. +..+++|++|++++| .+. .+|..++.+
T Consensus 72 l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l 148 (313)
T 1ogq_A 72 LANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISSL 148 (313)
T ss_dssp GGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGC
T ss_pred HhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhcC
Confidence 34455666666663 4 333 44455566666666666666655 34443 666666666666666 555 456666666
Q ss_pred CCCCEEEcCCCCCc-ccCHHHHHhhhhCCCCcCCCCC-CCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 270 IDLQYLNLSNTNIC-ELPIGIKKNLKAIPAGMLSSLL-SLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 270 ~~L~~L~l~~~~l~-~lp~~i~~Ll~~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
++|++|++++|.+. .+|. . +.++. +|++|++++|.+ ....+..++.++ |+.|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~-----------~-l~~l~~~L~~L~L~~N~l------------~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPD-----------S-YGSFSKLFTSMTISRNRL------------TGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TTCCEEECCSSCCEEECCG-----------G-GGCCCTTCCEEECCSSEE------------EEECCGGGGGCC-CSEEE
T ss_pred CCCCeEECcCCcccCcCCH-----------H-HhhhhhcCcEEECcCCee------------eccCChHHhCCc-ccEEE
Confidence 66666666666665 4443 4 66776 788888887776 445666677776 77777
Q ss_pred EEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC-CCcc-cccCCCcc
Q 012641 348 VIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK-DLTC-ILYIPRLR 425 (459)
Q Consensus 348 l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~-~lp~-l~~l~~L~ 425 (459)
++.+..... .+........|+.|+++.+.+... +.. ...+++|++|++++|.+. .+|. ++.+++|+
T Consensus 204 Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~--------~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 204 LSRNMLEGD--ASVLFGSDKNTQKIHLAKNSLAFD--------LGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp CCSSEEEEC--CGGGCCTTSCCSEEECCSSEECCB--------GGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred CcCCcccCc--CCHHHhcCCCCCEEECCCCceeee--------cCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 754322211 111111223355555544433211 000 123566777777766544 4443 66667777
Q ss_pred eeecccC
Q 012641 426 FLFAKDC 432 (459)
Q Consensus 426 ~L~l~~c 432 (459)
+|+++++
T Consensus 272 ~L~Ls~N 278 (313)
T 1ogq_A 272 SLNVSFN 278 (313)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 7777664
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=150.19 Aligned_cols=195 Identities=22% Similarity=0.221 Sum_probs=133.9
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
..+++.+.+.++ .+..+|..+. ++++.|++++|.+..+++..|..+++|++|++++| .++.+|.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEE
Confidence 356777777777 7777765443 67888888888777777666888888888888888 78877764 7788888888
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhh
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSL 356 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 356 (459)
+++|.+..+|. . +.++++|++|++++|.+ ....+..+..+++|+.|+++.+....+
T Consensus 84 Ls~N~l~~l~~-----------~-~~~l~~L~~L~l~~N~l------------~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 84 LSHNQLQSLPL-----------L-GQTLPALTVLDVSFNRL------------TSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp CCSSCCSSCCC-----------C-TTTCTTCCEEECCSSCC------------CCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCcCCcCch-----------h-hccCCCCCEEECCCCcC------------cccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 88888776654 2 67777888888887776 223345567777788877754433221
Q ss_pred hhhhcc-hhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccC
Q 012641 357 NKLKSS-SKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDC 432 (459)
Q Consensus 357 ~~l~~~-~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c 432 (459)
+.. ......|+.|+++.+.++.+....+ ..+++|+.|+|++|.++.+|. +..+++|+.|++++.
T Consensus 140 ---~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---------~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 140 ---PPGLLTPTPKLEKLSLANNNLTELPAGLL---------NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ---CTTTTTTCTTCCEEECTTSCCSCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred ---ChhhcccccCCCEEECCCCcCCccCHHHh---------cCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 111 1122345566665555554422111 237899999999998888885 777889999999863
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-17 Score=169.93 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=110.2
Q ss_pred ccccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCC
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQ 273 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~ 273 (459)
.+.+++.+.+.++ .+..+|+. +..+++|++|++++|.+..+++..|+.+++|++|+|++| .+..+|. .++.+++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 4567899999998 88888644 467899999999999998888766999999999999999 8888865 469999999
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
+|++++|.+..+|.+ +++++++|++|++++|.+ ....+..++.+++|+.|+++.+.
T Consensus 127 ~L~L~~n~l~~l~~~-----------~~~~l~~L~~L~Ls~N~l------------~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 127 VLVLERNDLSSLPRG-----------IFHNTPKLTTLSMSNNNL------------ERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp EEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCC------------CBCCTTTTTTCTTCCEEECTTSC
T ss_pred EEEeeCCCCCCCCHH-----------HhccCCCCCEEEeeCCcC------------CCCChhhhhcCCcCcEEECcCCC
Confidence 999999998877653 268999999999999987 44455677888888888886543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-17 Score=147.70 Aligned_cols=205 Identities=12% Similarity=0.145 Sum_probs=143.2
Q ss_pred ccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeeccc-ccccchhHHhcCCCccEEEccC-CCCccccc-
Q 012641 188 SIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTM-IKEFENKFFQSMHALRVLDSSQ-NAKLSKLH- 263 (459)
Q Consensus 188 ~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~Lr~L~L~~-~~~i~~lP- 263 (459)
...+|. -...++.+.+.++ .+..+++ .+..+++|++|++++|. +..+++..|..+++|++|++++ | .++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECT
T ss_pred ccccCC--CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCH
Confidence 455555 2357899999999 8888864 67789999999999996 8888887688999999999998 8 888886
Q ss_pred ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCC---EeeecCC-CCCCcCCCCCCCCccccchhhhhc
Q 012641 264 VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLR---VFSWVPT-RYAGFNYGSSVPGVTVLLLEELES 339 (459)
Q Consensus 264 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 339 (459)
..++.+++|++|++++|.++.+|. +.++++|+ +|++++| .+ .......+..
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-------------~~~l~~L~~L~~L~l~~N~~l------------~~i~~~~~~~ 153 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-------------LTKVYSTDIFFILEITDNPYM------------TSIPVNAFQG 153 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-------------CTTCCBCCSEEEEEEESCTTC------------CEECTTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-------------cccccccccccEEECCCCcch------------hhcCcccccc
Confidence 467889999999999998887764 56666666 9999988 65 3333445778
Q ss_pred cccCc-eeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC-CCCccccCccccCCccCcccc-cCccEEEEecCCCCCCc
Q 012641 340 LKHLQ-EISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE-LSSLIDISSSSLTTMMKGHFS-QNLQDLSIINCSIKDLT 416 (459)
Q Consensus 340 L~~L~-~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~-l~~l~~~~l~~~~~~i~~~~l-~~L~~L~L~~~~l~~lp 416 (459)
+++|+ .|+++.+....+ +...-....|+.|+++.+. +..+....+ ..+ ++|+.|++++|.++.+|
T Consensus 154 l~~L~~~L~l~~n~l~~i---~~~~~~~~~L~~L~L~~n~~l~~i~~~~~---------~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSV---QGYAFNGTKLDAVYLNKNKYLTVIDKDAF---------GGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TBSSEEEEECCSCCCCEE---CTTTTTTCEEEEEECTTCTTCCEECTTTT---------TTCSBCCSEEECTTCCCCCCC
T ss_pred hhcceeEEEcCCCCCccc---CHhhcCCCCCCEEEcCCCCCcccCCHHHh---------hccccCCcEEECCCCccccCC
Confidence 88888 888864433322 1111001346666665542 443321111 125 77888888888777776
Q ss_pred ccccCCCcceeecccCcc
Q 012641 417 CILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 417 ~l~~l~~L~~L~l~~c~~ 434 (459)
.- .+++|+.|+++++..
T Consensus 222 ~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 222 SK-GLEHLKELIARNTWT 238 (239)
T ss_dssp CT-TCTTCSEEECTTC--
T ss_pred hh-HhccCceeeccCccC
Confidence 54 577888888877654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-17 Score=155.03 Aligned_cols=199 Identities=14% Similarity=0.116 Sum_probs=151.8
Q ss_pred ccceEEEeecCCCcc---ccCCCCCCCCcceeeeeec-cccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCC
Q 012641 198 NEAVRVSLWRSPSID---SLSPTPPCCPRLLTLLVRY-TMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELID 271 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~ 271 (459)
..++.+.+.++ .+. .+|..+..+++|++|++++ |.+. .+|.. ++.+++|++|++++| .+. .+|..++.+++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTT
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCC
Confidence 47999999999 776 5778889999999999995 7665 56666 999999999999999 887 78999999999
Q ss_pred CCEEEcCCCCCc-ccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccc-cCceeEEE
Q 012641 272 LQYLNLSNTNIC-ELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK-HLQEISVI 349 (459)
Q Consensus 272 L~~L~l~~~~l~-~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~ 349 (459)
|++|++++|.+. .+|. . +.++++|++|++++|.+ .+..+..++.+. +|+.|++.
T Consensus 127 L~~L~Ls~N~l~~~~p~-----------~-~~~l~~L~~L~L~~N~l------------~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPP-----------S-ISSLPNLVGITFDGNRI------------SGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp CCEEECCSSEEESCCCG-----------G-GGGCTTCCEEECCSSCC------------EEECCGGGGCCCTTCCEEECC
T ss_pred CCEEeCCCCccCCcCCh-----------H-HhcCCCCCeEECcCCcc------------cCcCCHHHhhhhhcCcEEECc
Confidence 999999999887 5554 3 88899999999999987 556788899998 99999987
Q ss_pred EeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC-CCcccccCCCcceee
Q 012641 350 ILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK-DLTCILYIPRLRFLF 428 (459)
Q Consensus 350 ~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~-~lp~l~~l~~L~~L~ 428 (459)
.+.... .++....... |+.|+++.+.+.... +..+ ..+++|+.|++++|.+. .+|.+..+++|++|+
T Consensus 183 ~N~l~~--~~~~~~~~l~-L~~L~Ls~N~l~~~~-------~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~ 250 (313)
T 1ogq_A 183 RNRLTG--KIPPTFANLN-LAFVDLSRNMLEGDA-------SVLF--GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250 (313)
T ss_dssp SSEEEE--ECCGGGGGCC-CSEEECCSSEEEECC-------GGGC--CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred CCeeec--cCChHHhCCc-ccEEECcCCcccCcC-------CHHH--hcCCCCCEEECCCCceeeecCcccccCCCCEEE
Confidence 543321 1111111111 666666555443221 1111 34889999999999665 455588899999999
Q ss_pred cccCcchh
Q 012641 429 AKDCPSLE 436 (459)
Q Consensus 429 l~~c~~l~ 436 (459)
++++. +.
T Consensus 251 Ls~N~-l~ 257 (313)
T 1ogq_A 251 LRNNR-IY 257 (313)
T ss_dssp CCSSC-CE
T ss_pred CcCCc-cc
Confidence 99854 44
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=152.39 Aligned_cols=209 Identities=17% Similarity=0.178 Sum_probs=157.0
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEc
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNL 277 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l 277 (459)
.++.+.+.++ .+..+|..+. +++++|++++|.+..+++..|..+++|++|++++| .+..+ |..++.+++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 5778888888 8888865443 78999999999999998877999999999999999 89888 888999999999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhh
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLN 357 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 357 (459)
++|.++.+|.. +. ++|++|++++|.+ .......+.++++|+.|++..+......
T Consensus 108 s~n~l~~l~~~------------~~--~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 108 SKNQLKELPEK------------MP--KTLQELRVHENEI------------TKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp CSSCCSBCCSS------------CC--TTCCEEECCSSCC------------CBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CCCcCCccChh------------hc--ccccEEECCCCcc------------cccCHhHhcCCccccEEECCCCcCCccC
Confidence 99999887643 33 7999999999987 4445667899999999999765443222
Q ss_pred hhhcchhHHhhhhhhhccCCCCCCc--------cccCcccc------CCccCcccccCccEEEEecCCCCCCc--ccccC
Q 012641 358 KLKSSSKLQSCVRRQVMGLPELSSL--------IDISSSSL------TTMMKGHFSQNLQDLSIINCSIKDLT--CILYI 421 (459)
Q Consensus 358 ~l~~~~~l~~~L~~L~l~~~~l~~l--------~~~~l~~~------~~~i~~~~l~~L~~L~L~~~~l~~lp--~l~~l 421 (459)
...........|+.|+++.+.+..+ +.+++... +.++ ..+++|++|++++|.+..++ .+..+
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred cChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCceeChhhccCC
Confidence 2222223334577777766555443 22333321 1122 35789999999999777766 37889
Q ss_pred CCcceeecccCcchhhhcc
Q 012641 422 PRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 422 ~~L~~L~l~~c~~l~~i~~ 440 (459)
++|++|+++++ ++..+|.
T Consensus 240 ~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp TTCCEEECCSS-CCSSCCT
T ss_pred CCCCEEECCCC-cCccCCh
Confidence 99999999985 6776665
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-17 Score=184.53 Aligned_cols=145 Identities=21% Similarity=0.228 Sum_probs=120.3
Q ss_pred CccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCC-----CCcccchhhhhhhhcCCCchhH
Q 012641 14 HPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFE-----GMGTRVFPLLKFSYDRLTSETH 88 (459)
Q Consensus 14 ~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~-----~~~~~i~~~l~~sy~~L~~~~l 88 (459)
.+.+++++++|+++|+|+||||+++|++|+.+. ..|+.+++.+....+..- ...+.+..++.+||+.||+ ++
T Consensus 303 ~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~ 379 (1249)
T 3sfz_A 303 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DI 379 (1249)
T ss_dssp STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TT
T ss_pred hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HH
Confidence 345567899999999999999999999999843 589999999977654311 1113589999999999999 69
Q ss_pred HHHhhhhcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeehHHHHHHHH
Q 012641 89 KTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMAL 168 (459)
Q Consensus 89 k~cfl~~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~hdli~~l~~ 168 (459)
|.||+|||+||+++.|+++.++++|.++ ++.++.++++|++++|++... ++....|+||+++|++++
T Consensus 380 ~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~-~~~~~~~~~h~l~~~~~~ 446 (1249)
T 3sfz_A 380 KDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNR-NGKSFCYYLHDLQVDFLT 446 (1249)
T ss_dssp HHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEE-SSSSEEEECCHHHHHHHH
T ss_pred HHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEec-CCCceEEEecHHHHHHHH
Confidence 9999999999999999999999999665 356788999999999998654 233456999999999999
Q ss_pred HHHhcc
Q 012641 169 WIASSQ 174 (459)
Q Consensus 169 ~~~~~~ 174 (459)
..+.++
T Consensus 447 ~~~~~~ 452 (1249)
T 3sfz_A 447 EKNRSQ 452 (1249)
T ss_dssp HHTGGG
T ss_pred hhhhHH
Confidence 886654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=165.93 Aligned_cols=152 Identities=18% Similarity=0.101 Sum_probs=106.6
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+.+...+|... ...++.|.+.++ .+..++ ..+.++++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus 16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~ 92 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL-PNSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-P 92 (606)
T ss_dssp EEECTTSCCSSCCTTS-CTTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred eEECCCCCcccCcCCC-CCcCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-c
Confidence 4555666677776532 257899999999 888874 57888999999999999888887666999999999999999 8
Q ss_pred cccc-cccccCCCCCCEEEcCCCCCcccC-HHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC
Q 012641 259 LSKL-HVGEGELIDLQYLNLSNTNICELP-IGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS 324 (459)
Q Consensus 259 i~~l-P~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 324 (459)
+..+ |..++.+++|++|++++|.+..++ ..++.+ +..++...+..+++|++|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l------- 165 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI------- 165 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC-------
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc-------
Confidence 8776 778899999999999999888763 222222 2222111133355555555555544
Q ss_pred CCCCccccchhhhhccccCcee
Q 012641 325 SVPGVTVLLLEELESLKHLQEI 346 (459)
Q Consensus 325 ~~~~~~~~~~~~l~~L~~L~~L 346 (459)
....+..++.+++|+.+
T Consensus 166 -----~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 166 -----HYLSKEDMSSLQQATNL 182 (606)
T ss_dssp -----CEECHHHHHTTTTCCSE
T ss_pred -----cccChhhhhhhccccee
Confidence 33345667777777733
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=168.98 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=98.9
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+..+..+|.... +++++|.+.++ .+..+++ .+.++++|++|++++|.+..+++..|+.+++|++|++++| .
T Consensus 8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP-TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-E 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC-TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-C
T ss_pred eeECCCCCccccccccC-CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-c
Confidence 45556667777775332 78999999999 8888863 4788999999999999988888777999999999999999 9
Q ss_pred cccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 259 LSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 259 i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..+|. .++.+++|++|++++|.+..+|.. . ++++++|++|++++|.+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~-~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNN----------P-FVKQKNLITLDLSHNGL 133 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSC----------T-TTTCTTCCEEECCSSCC
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChh----------H-ccccCCCCEEECCCCcc
Confidence 999986 589999999999999998877631 1 55566666666665554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=159.44 Aligned_cols=127 Identities=13% Similarity=0.256 Sum_probs=93.3
Q ss_pred ecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc
Q 012641 183 QETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
..+.....++.....++++.|.+.++ .+..+++ +..+++|++|++++|.+..+++ +..+++|++|++++| .+..+
T Consensus 53 l~~~~i~~l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~ 127 (466)
T 1o6v_A 53 ADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDI 127 (466)
T ss_dssp CCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCCCccCcchhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCC
Confidence 34444555565666778888888888 7877744 7888888888888888877776 888888888888888 88888
Q ss_pred cccccCCCCCCEEEcCCCCCcccCHHHHHh-----------hhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 263 HVGEGELIDLQYLNLSNTNICELPIGIKKN-----------LKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 263 P~~i~~L~~L~~L~l~~~~l~~lp~~i~~L-----------l~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
|. ++.+++|++|++++|.+..+|. +..+ +..++. +.++++|++|++++|...
T Consensus 128 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 128 DP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp GG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchh--hccCCCCCEEECcCCcCC
Confidence 76 8888888888888888777653 3332 122232 667777888888777653
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=149.01 Aligned_cols=201 Identities=15% Similarity=0.103 Sum_probs=151.9
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~ 279 (459)
+.+...++ .+..+|..+ .++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++.+++|++|++++
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCC
Confidence 55667776 788885433 479999999999999999877999999999999999 89888 78899999999999999
Q ss_pred CC-CcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 280 TN-ICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 280 ~~-l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
|. +..++. .. +.++++|++|++++|.+ ....+..+..+++|+.|++..+....+..
T Consensus 90 n~~l~~~~~----------~~-~~~l~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 90 NAQLRSVDP----------AT-FHGLGRLHTLHLDRCGL------------QELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp CTTCCCCCT----------TT-TTTCTTCCEEECTTSCC------------CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccccCH----------HH-hcCCcCCCEEECCCCcC------------CEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 97 877632 23 88999999999999987 33456678889999999997554332211
Q ss_pred hhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCC-c-ccccCCCcceeecccCcchh
Q 012641 359 LKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDL-T-CILYIPRLRFLFAKDCPSLE 436 (459)
Q Consensus 359 l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~l-p-~l~~l~~L~~L~l~~c~~l~ 436 (459)
........|+.|+++.+.+..+... ++ ..+++|++|++++|.+..+ | .++.+++|+.|++++ +++.
T Consensus 147 --~~~~~l~~L~~L~l~~n~l~~~~~~-------~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~ 214 (285)
T 1ozn_A 147 --DTFRDLGNLTHLFLHGNRISSVPER-------AF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLS 214 (285)
T ss_dssp --TTTTTCTTCCEEECCSSCCCEECTT-------TT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCS
T ss_pred --hHhccCCCccEEECCCCcccccCHH-------Hh--cCccccCEEECCCCcccccCHhHccCcccccEeeCCC-CcCC
Confidence 1112223466676666555444211 11 2378999999999977776 3 488999999999998 4666
Q ss_pred hhcc
Q 012641 437 EIIA 440 (459)
Q Consensus 437 ~i~~ 440 (459)
.++.
T Consensus 215 ~~~~ 218 (285)
T 1ozn_A 215 ALPT 218 (285)
T ss_dssp CCCH
T ss_pred cCCH
Confidence 6654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=152.29 Aligned_cols=210 Identities=17% Similarity=0.153 Sum_probs=156.3
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEc
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNL 277 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l 277 (459)
.++.+.+.++ .+..+|..+ .++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 5788899888 888887555 379999999999999888767999999999999999 89887 788999999999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhh
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLN 357 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 357 (459)
++|.+..+|.. +. ++|++|++++|.+ .......+..+++|+.|++..+......
T Consensus 110 ~~n~l~~l~~~------------~~--~~L~~L~l~~n~i------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 110 SKNHLVEIPPN------------LP--SSLVELRIHDNRI------------RKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp CSSCCCSCCSS------------CC--TTCCEEECCSSCC------------CCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCCcCCccCcc------------cc--ccCCEEECCCCcc------------CccCHhHhCCCccCCEEECCCCccccCC
Confidence 99999887643 33 7999999999987 3334456889999999999765443221
Q ss_pred hhhcchhHHhhhhhhhccCCCCCCc--------cccCcccc-CCccC---cccccCccEEEEecCCCCCCcc--cccCCC
Q 012641 358 KLKSSSKLQSCVRRQVMGLPELSSL--------IDISSSSL-TTMMK---GHFSQNLQDLSIINCSIKDLTC--ILYIPR 423 (459)
Q Consensus 358 ~l~~~~~l~~~L~~L~l~~~~l~~l--------~~~~l~~~-~~~i~---~~~l~~L~~L~L~~~~l~~lp~--l~~l~~ 423 (459)
..+...... .|+.|+++.+.+..+ +.+++... -..++ ...+++|++|++++|.+..++. ++.+++
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred CCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 111111111 577777765555433 33333331 01111 1357899999999998877764 888999
Q ss_pred cceeecccCcchhhhcc
Q 012641 424 LRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 424 L~~L~l~~c~~l~~i~~ 440 (459)
|++|++++ ++++.+|.
T Consensus 243 L~~L~L~~-N~l~~lp~ 258 (332)
T 2ft3_A 243 LRELHLDN-NKLSRVPA 258 (332)
T ss_dssp CCEEECCS-SCCCBCCT
T ss_pred CCEEECCC-CcCeecCh
Confidence 99999998 46777766
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=159.34 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=52.2
Q ss_pred ccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCC
Q 012641 196 SWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQ 273 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~ 273 (459)
...+++.|.+.+| .+..+++ .+..+++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++.+++|+
T Consensus 78 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 78 NLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCC
T ss_pred CCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCC
Confidence 3455666666665 5555542 2455666666666666555554444566666666666666 55544 34556666666
Q ss_pred EEEcCCCCCcccCH
Q 012641 274 YLNLSNTNICELPI 287 (459)
Q Consensus 274 ~L~l~~~~l~~lp~ 287 (459)
+|++++|.+..+|.
T Consensus 156 ~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 156 QLTLEKCNLTSIPT 169 (477)
T ss_dssp EEEEESCCCSSCCH
T ss_pred EEECCCCcCcccCh
Confidence 66666666666554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.4e-16 Score=155.34 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=71.9
Q ss_pred CccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccc
Q 012641 187 KSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE 266 (459)
Q Consensus 187 ~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i 266 (459)
.....|.....++++.|.+.++ .+..++ +..+++|++|++++|.+..++ ++.+++|++|++++| .++.+| +
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~ 123 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--V 123 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--C
T ss_pred CcccChhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--C
Confidence 3333444444556666666666 555552 555666666666666555553 556666666666666 565554 5
Q ss_pred cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCcee
Q 012641 267 GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEI 346 (459)
Q Consensus 267 ~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 346 (459)
+.+++|++|++++|.++.+| ++++++|++|++++|... ... .++.+++|+.|
T Consensus 124 ~~l~~L~~L~l~~N~l~~l~--------------l~~l~~L~~L~l~~n~~~------------~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEID--------------VSHNTQLTELDCHLNKKI------------TKL--DVTPQTQLTTL 175 (457)
T ss_dssp TTCTTCCEEECTTSCCSCCC--------------CTTCTTCCEEECTTCSCC------------CCC--CCTTCTTCCEE
T ss_pred CCCCcCCEEECCCCccceec--------------cccCCcCCEEECCCCCcc------------ccc--ccccCCcCCEE
Confidence 66666666666666655543 455566666666655321 111 34556666666
Q ss_pred EEEEe
Q 012641 347 SVIIL 351 (459)
Q Consensus 347 ~l~~~ 351 (459)
+++.+
T Consensus 176 ~ls~n 180 (457)
T 3bz5_A 176 DCSFN 180 (457)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 66543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=153.85 Aligned_cols=211 Identities=17% Similarity=0.156 Sum_probs=140.2
Q ss_pred EEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCCCC
Q 012641 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTN 281 (459)
Q Consensus 203 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~ 281 (459)
....++ .+..+|..+. ++|++|++++|.+..++...+..+++|++|++++| .++.+ |..++.+++|++|++++|.
T Consensus 36 c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc
Confidence 566677 8888865444 58999999999999999877999999999999999 99888 4679999999999999999
Q ss_pred CcccCHH-HHHh------------hhhCCC-CcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 282 ICELPIG-IKKN------------LKAIPA-GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 282 l~~lp~~-i~~L------------l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
++.+|.. ++.+ +..+|. ..+.++++|++|++++|... ....+..++.+++|+.|+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-----------~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-----------TKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------CEECTTTTTTCCEEEEEE
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-----------cccCHHHccCCCCCCEEE
Confidence 9999876 3433 455665 33666777777777666321 223345666777777777
Q ss_pred EEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCC------------
Q 012641 348 VIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDL------------ 415 (459)
Q Consensus 348 l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~l------------ 415 (459)
+..+..... .+........|+.|+++.+.+..+.... ...+++|+.|++++|.++.+
T Consensus 181 l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~---------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 181 IDASDLQSY--EPKSLKSIQNVSHLILHMKQHILLLEIF---------VDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp EEETTCCEE--CTTTTTTCSEEEEEEEECSCSTTHHHHH---------HHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred CCCCCcCcc--CHHHHhccccCCeecCCCCccccchhhh---------hhhcccccEEECCCCccccccccccccccccc
Confidence 765433221 0111111223555555444433221100 01255666666666644432
Q ss_pred --------------------c-ccccCCCcceeecccCcchhhhcc
Q 012641 416 --------------------T-CILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 416 --------------------p-~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
| +++.+++|++|++++ ++++.++.
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~ 294 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPD 294 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCT
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCH
Confidence 3 256789999999998 46777766
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=142.69 Aligned_cols=131 Identities=19% Similarity=0.238 Sum_probs=101.2
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELID 271 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~ 271 (459)
....++.++.+.+.++ .+..+ +.+..+++|++|++++|.+..++. +..+++|++|++++| .++.+|.. ++.+++
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANNS-DIKSV-QGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGN-QLQSLPNGVFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTTS-CCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred ccccccceeeeeeCCC-Ccccc-cccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCccChhHhcCCcC
Confidence 3344577888888888 77777 667888899999999888777653 888899999999999 88887654 688899
Q ss_pred CCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 272 LQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 272 L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
|++|++++|.+..+|.. .++++++|++|++++|.+ ....+..++.+++|+.|+++.+
T Consensus 111 L~~L~L~~n~l~~~~~~-----------~~~~l~~L~~L~L~~n~l------------~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDG-----------VFDKLTNLTYLNLAHNQL------------QSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CCEEECTTSCCCCCCTT-----------TTTTCTTCCEEECCSSCC------------CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHH-----------HhccCCCCCEEECCCCcc------------CccCHHHhccCccCCEEECCCC
Confidence 99999999988776542 278888999999988876 3333445677888888887644
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=170.36 Aligned_cols=140 Identities=11% Similarity=0.124 Sum_probs=102.1
Q ss_pred ccccccceEEEeecCCCccc------------------cCCCCC--CCCcceeeeeecccc-cccchhHHhcCCCccEEE
Q 012641 194 TASWNEAVRVSLWRSPSIDS------------------LSPTPP--CCPRLLTLLVRYTMI-KEFENKFFQSMHALRVLD 252 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~l~~Lr~L~ 252 (459)
...+++++.|.+.+| .+.. +|..+. ++++|++|++++|.+ ..+|.. ++.+++|++|+
T Consensus 444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEE
Confidence 445678888888888 7776 777777 888888888888854 456655 88888888888
Q ss_pred ccCCCC-ccc--ccccccCCC-------CCCEEEcCCCCCcccCH--HHHHh------------hhhCCCCcCCCCCCCC
Q 012641 253 SSQNAK-LSK--LHVGEGELI-------DLQYLNLSNTNICELPI--GIKKN------------LKAIPAGMLSSLLSLR 308 (459)
Q Consensus 253 L~~~~~-i~~--lP~~i~~L~-------~L~~L~l~~~~l~~lp~--~i~~L------------l~~lp~~~i~~L~~L~ 308 (459)
+++| . ++. +|..++.+. +|++|++++|.+..+|. .++.+ +..+| . ++++++|+
T Consensus 522 Ls~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-C-CCTTSEES
T ss_pred CcCC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-h-hcCCCcce
Confidence 8888 5 663 777666555 88888888888888887 66665 45677 4 78888888
Q ss_pred EeeecCCCCCCcCCCCCCCCccccchhhhhcccc-CceeEEEEe
Q 012641 309 VFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKH-LQEISVIIL 351 (459)
Q Consensus 309 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~ 351 (459)
+|++++|.+. ..+..+.++++ |+.|+++.+
T Consensus 599 ~L~Ls~N~l~-------------~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 599 DLKLDYNQIE-------------EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp EEECCSSCCS-------------CCCTTSCEECTTCCEEECCSS
T ss_pred EEECcCCccc-------------cchHHHhhccccCCEEECcCC
Confidence 8888887763 24445555655 666665443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-16 Score=146.75 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=126.4
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDL 272 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 272 (459)
....+++++.+.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+|. ++.+++|
T Consensus 41 ~~~~l~~L~~L~l~~~-~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 41 TQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKL 114 (291)
T ss_dssp CHHHHHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTC
T ss_pred chhhcCcccEEEccCC-CcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCC
Confidence 3345578999999998 88888 567888999999999998888877 889999999999999 8888776 8999999
Q ss_pred CEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 273 QYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
++|++++|.+..+|. +.++++|++|++++|.+.. +..++.+++|+.|+++.+.
T Consensus 115 ~~L~L~~n~i~~~~~-------------l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 115 KSLSLEHNGISDING-------------LVHLPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp CEEECTTSCCCCCGG-------------GGGCTTCCEEECCSSCCCC--------------CGGGGGCTTCSEEECCSSC
T ss_pred CEEECCCCcCCCChh-------------hcCCCCCCEEEccCCcCCc--------------chhhccCCCCCEEEccCCc
Confidence 999999999887753 7788999999999988632 2577888888888886443
Q ss_pred hhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeeccc
Q 012641 353 LDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKD 431 (459)
Q Consensus 353 ~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~ 431 (459)
...+.. ...+++|+.|++++|.++.+|.+..+++|+.|++++
T Consensus 168 l~~~~~-------------------------------------l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 168 ISDIVP-------------------------------------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp CCCCGG-------------------------------------GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred cccchh-------------------------------------hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence 222111 012455666666666555555555566666666655
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=154.19 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=117.5
Q ss_pred ccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCC
Q 012641 194 TASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELID 271 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~ 271 (459)
...+++++.|.+.+| .+..++ ..+..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+|. .+..+++
T Consensus 95 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPS 172 (452)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTT
T ss_pred cCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCc
Confidence 345577888888888 777765 55677888888888888887887777778888888888888 7777764 5677778
Q ss_pred CCEEEcCCC-CCcccCHH-HHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 272 LQYLNLSNT-NICELPIG-IKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 272 L~~L~l~~~-~l~~lp~~-i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
|++|++++| .+..+|.. +..+ +..+|. +..+++|++|++++|.+ ....+..+
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l------------~~~~~~~~ 238 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHF------------PEIRPGSF 238 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCC------------SEECGGGG
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--ccccccccEEECcCCcC------------cccCcccc
Confidence 888888774 55555532 1111 223332 55555666666665554 33345566
Q ss_pred hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC
Q 012641 338 ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK 413 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~ 413 (459)
.++++|+.|++..+....+. +........|+.|+++.+.+..+.... + ..+++|+.|+|++|.+.
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~-------~--~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHNNLSSLPHDL-------F--TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSCCCTTS-------S--TTCTTCCEEECCSSCEE
T ss_pred cCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCCcCCccChHH-------h--ccccCCCEEEccCCCcC
Confidence 66677777666433222110 001111223455555444444332111 1 34789999999999433
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-16 Score=166.48 Aligned_cols=87 Identities=11% Similarity=0.173 Sum_probs=50.2
Q ss_pred ccceEEEeecCCCccccCC--CCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcccccccccCCCC-CC
Q 012641 198 NEAVRVSLWRSPSIDSLSP--TPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELID-LQ 273 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~-L~ 273 (459)
++++.|.+.+| .+..+|. .+..+++|++|++++|.+. .+| . ++.+++|++|++++| .+..+|..++.+++ |+
T Consensus 305 ~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYN-QITEIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSS-EEEECCTTSEEECTTCC
T ss_pred CCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCC-ccccccHhhhhhcccCc
Confidence 45555555555 5555544 4555566666666665555 555 2 555566666666666 55566666666666 66
Q ss_pred EEEcCCCCCcccCHH
Q 012641 274 YLNLSNTNICELPIG 288 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~ 288 (459)
+|++++|.+..+|..
T Consensus 381 ~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 381 NLSFAHNKLKYIPNI 395 (636)
T ss_dssp EEECCSSCCSSCCSC
T ss_pred EEEccCCcCcccchh
Confidence 666666666655543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=160.92 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=114.3
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCcccc-CCCCCCCCcceeeeeecc-cccccchhHHhcCCCccEEEccCC
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSL-SPTPPCCPRLLTLLVRYT-MIKEFENKFFQSMHALRVLDSSQN 256 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~ 256 (459)
..+.+.+..+..+|. -.++++.|.+.+| .+..+ +..+..+++|++|++++| ....+++..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 456667778888887 5589999999999 88876 467899999999999999 566776666999999999999999
Q ss_pred CCcccc-cccccCCCCCCEEEcCCCCCcc-cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccch
Q 012641 257 AKLSKL-HVGEGELIDLQYLNLSNTNICE-LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL 334 (459)
Q Consensus 257 ~~i~~l-P~~i~~L~~L~~L~l~~~~l~~-lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
.+..+ |..++.+++|++|++++|.+.. +|.. ..++++++|++|++++|.+.. ....
T Consensus 84 -~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~----------~~~~~L~~L~~L~Ls~N~l~~-----------~~~~ 141 (844)
T 3j0a_A 84 -KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD----------GYFRNLKALTRLDLSKNQIRS-----------LYLH 141 (844)
T ss_dssp -CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT----------CCCSSCSSCCEEEEESCCCCC-----------CCCC
T ss_pred -cCcccCHhHccCCcccCEeeCcCCCCCcccccC----------ccccccCCCCEEECCCCcccc-----------cccc
Confidence 88877 8899999999999999998875 3331 226677777777777776531 1122
Q ss_pred hhhhccccCceeEEEEe
Q 012641 335 EELESLKHLQEISVIIL 351 (459)
Q Consensus 335 ~~l~~L~~L~~L~l~~~ 351 (459)
..+++|++|+.|+++.+
T Consensus 142 ~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp GGGGTCSSCCEEEEESS
T ss_pred hhHhhCCCCCEEECCCC
Confidence 45666666776666543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-15 Score=151.35 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=90.2
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
.+++++.+.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+|. ++.+++|++|
T Consensus 44 ~l~~l~~L~l~~~-~i~~l-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEE
T ss_pred HhccccEEecCCC-CCccC-cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEE
Confidence 3578999999999 88888 568889999999999999988887 899999999999999 9999887 9999999999
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
++++|.+..+|. +.++++|++|++++|.+
T Consensus 118 ~L~~n~l~~~~~-------------~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 118 TLFNNQITDIDP-------------LKNLTNLNRLELSSNTI 146 (466)
T ss_dssp ECCSSCCCCCGG-------------GTTCTTCSEEEEEEEEE
T ss_pred ECCCCCCCCChH-------------HcCCCCCCEEECCCCcc
Confidence 999999988864 66677777777777654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=137.64 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=60.9
Q ss_pred ceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcC
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLS 278 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~ 278 (459)
.+.+.+.++ .+..+|..+. ++++.|++++|.+..+++..+..+++|++|++++| .+..+| ..++.+++|++|+++
T Consensus 16 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 345555555 5666544333 45666666666666665555666666666666666 665553 335666666666666
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+|.+..+|.. .+.++++|++|++++|.+
T Consensus 92 ~n~l~~~~~~-----------~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 92 NNQLASLPLG-----------VFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp TSCCCCCCTT-----------TTTTCTTCCEEECCSSCC
T ss_pred CCcccccChh-----------HhcccCCCCEEEcCCCcC
Confidence 6666555421 155666666666666654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-16 Score=158.76 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=103.2
Q ss_pred cCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc
Q 012641 184 ETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 184 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
.+..+..+|... .+.++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..|..+++|++|++++| .+..+
T Consensus 13 ~~~~l~~ip~~~-~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 89 (549)
T 2z81_A 13 RSRSFTSIPSGL-TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSL 89 (549)
T ss_dssp TTSCCSSCCSCC-CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSC
T ss_pred CCCccccccccC-CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCcc
Confidence 344566666533 267888999888 777764 56788889999999988888887766888899999999998 88877
Q ss_pred ccc-ccCCCCCCEEEcCCCCCccc--CHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCC
Q 012641 263 HVG-EGELIDLQYLNLSNTNICEL--PIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSV 326 (459)
Q Consensus 263 P~~-i~~L~~L~~L~l~~~~l~~l--p~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 326 (459)
|.. ++.+++|++|++++|.+..+ |..++.+ +..+|...+.++++|++|++++|.+
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l--------- 160 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL--------- 160 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC---------
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc---------
Confidence 654 88889999999998888754 3333332 2334432366666666666666655
Q ss_pred CCccccchhhhhccccCceeEEEE
Q 012641 327 PGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 327 ~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
....+..++.+++|+.|++..
T Consensus 161 ---~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 161 ---RNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp ---CEECTTTTTTCSEEEEEEEEC
T ss_pred ---cccChhhhhccccCceEeccc
Confidence 223344455555555555443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=145.81 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=142.6
Q ss_pred CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhC
Q 012641 217 TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAI 296 (459)
Q Consensus 217 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~l 296 (459)
....+++|++|.+.+|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.+..+|.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--------- 102 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVSA--------- 102 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCGG---------
T ss_pred cHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCchh---------
Confidence 34567899999999999888874 899999999999999 9999988 9999999999999999988763
Q ss_pred CCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccC
Q 012641 297 PAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGL 376 (459)
Q Consensus 297 p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~ 376 (459)
+.++++|++|++++|.+.. +..+..+++|+.|+++.+....+..+ .....|+.|+++.
T Consensus 103 ----~~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 103 ----IAGLQSIKTLDLTSTQITD--------------VTPLAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGN 160 (308)
T ss_dssp ----GTTCTTCCEEECTTSCCCC--------------CGGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCS
T ss_pred ----hcCCCCCCEEECCCCCCCC--------------chhhcCCCCCCEEECCCCccCcCccc----cCCCCccEEEccC
Confidence 8899999999999998732 23488999999999976554443322 2233577777766
Q ss_pred CCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 377 PELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 377 ~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
+.+..+.. ...+++|+.|++++|.+..++.+..+++|++|++++| .+..++.
T Consensus 161 n~l~~~~~-----------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~ 212 (308)
T 1h6u_A 161 AQVSDLTP-----------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVSP 212 (308)
T ss_dssp SCCCCCGG-----------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCGG
T ss_pred CcCCCChh-----------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC-ccCcccc
Confidence 66654421 2348899999999999999998999999999999984 5666554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=158.27 Aligned_cols=214 Identities=18% Similarity=0.125 Sum_probs=107.3
Q ss_pred ecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc
Q 012641 183 QETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
..+..+..+|.... ++++.|.+.+| .+..+|. .+++|++|++++|.+..+|. .+++|++|++++| .++.+
T Consensus 47 ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l 116 (622)
T 3g06_A 47 VGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHL 116 (622)
T ss_dssp CCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCC
T ss_pred ecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCC
Confidence 33444444443222 45666666666 5555533 34566666666665555554 4455556666555 55555
Q ss_pred cccccCCCCCCEEEcCCCCCcccCHHHHHh---------hhhCCCCcC-----------------CCCCCCCEeeecCCC
Q 012641 263 HVGEGELIDLQYLNLSNTNICELPIGIKKN---------LKAIPAGML-----------------SSLLSLRVFSWVPTR 316 (459)
Q Consensus 263 P~~i~~L~~L~~L~l~~~~l~~lp~~i~~L---------l~~lp~~~i-----------------~~L~~L~~L~l~~~~ 316 (459)
|. .+.+|++|++++|.++.+|..+.+| +..+|.. + ..+++|+.|++++|.
T Consensus 117 ~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCcccCCCCcEEECCCCC
Confidence 54 3344444444444444444332222 1222211 1 123556666666665
Q ss_pred CCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcc-------ccCccc
Q 012641 317 YAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLI-------DISSSS 389 (459)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~-------~~~l~~ 389 (459)
+..+ +. .+++|+.|++..+....+ +. ...+|+.|+++.+.++.++ .+++.+
T Consensus 193 l~~l-------------~~---~~~~L~~L~L~~N~l~~l---~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 193 LASL-------------PT---LPSELYKLWAYNNRLTSL---PA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSG 250 (622)
T ss_dssp CSCC-------------CC---CCTTCCEEECCSSCCSSC---CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred CCCC-------------CC---ccchhhEEECcCCccccc---CC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCC
Confidence 5321 10 123444444432222211 11 1123455555444333321 122222
Q ss_pred c-CCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccCc
Q 012641 390 L-TTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 390 ~-~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~ 433 (459)
. -..++. .+++|+.|+|++|.++.+|. ++.+++|+.|+|++++
T Consensus 251 N~L~~lp~-~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 251 NRLTSLPM-LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SCCSCCCC-CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCcCCc-ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 1 111222 57899999999998888886 8899999999999865
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.8e-16 Score=147.37 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=147.9
Q ss_pred cccceEEEeecCCCcc-ccCCCC--CCCCcceeeeeecccccccchhHHhcC-----CCccEEEccCCCCccccc-cccc
Q 012641 197 WNEAVRVSLWRSPSID-SLSPTP--PCCPRLLTLLVRYTMIKEFENKFFQSM-----HALRVLDSSQNAKLSKLH-VGEG 267 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~i~~lP-~~i~ 267 (459)
.++++.|.+.++ .+. .+|..+ ..+++|++|++++|.+..+|.. +..+ ++|++|++++| .+..+| ..++
T Consensus 94 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred cCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence 578999999999 776 465554 7899999999999998888654 7776 99999999999 888886 7899
Q ss_pred CCCCCCEEEcCCCCCcc---cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccch-hhhhccccC
Q 012641 268 ELIDLQYLNLSNTNICE---LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL-EELESLKHL 343 (459)
Q Consensus 268 ~L~~L~~L~l~~~~l~~---lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L 343 (459)
.+++|++|++++|.+.. +|.. ..+.++++|++|++++|.+.. ....+ .-+..+++|
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~----------~~~~~l~~L~~L~L~~N~l~~----------~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISA----------LCPLKFPTLQVLALRNAGMET----------PSGVCSALAAARVQL 230 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHH----------SCTTSCTTCCEEECTTSCCCC----------HHHHHHHHHHTTCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHH----------HHhccCCCCCEEECCCCcCcc----------hHHHHHHHHhcCCCC
Confidence 99999999999998653 2221 013789999999999998732 12233 333578999
Q ss_pred ceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCC
Q 012641 344 QEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPR 423 (459)
Q Consensus 344 ~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~ 423 (459)
+.|+++.+........... .....|+.|+++.+.++.+ |.++ +++|++|++++|.++.+|.+..+++
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~~i--------p~~~----~~~L~~L~Ls~N~l~~~p~~~~l~~ 297 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQV--------PKGL----PAKLSVLDLSYNRLDRNPSPDELPQ 297 (312)
T ss_dssp SEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCSSC--------CSSC----CSEEEEEECCSSCCCSCCCTTTSCE
T ss_pred CEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccChh--------hhhc----cCCceEEECCCCCCCCChhHhhCCC
Confidence 9999965433322111111 1123566677666665533 2222 2789999999998888888889999
Q ss_pred cceeecccCcchh
Q 012641 424 LRFLFAKDCPSLE 436 (459)
Q Consensus 424 L~~L~l~~c~~l~ 436 (459)
|++|++++ +.+.
T Consensus 298 L~~L~L~~-N~l~ 309 (312)
T 1wwl_A 298 VGNLSLKG-NPFL 309 (312)
T ss_dssp EEEEECTT-CTTT
T ss_pred CCEEeccC-CCCC
Confidence 99999998 4443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=159.86 Aligned_cols=222 Identities=16% Similarity=0.066 Sum_probs=102.2
Q ss_pred cccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecc-cccccchhHHhcCCCccEEEccCCCCcccc---cc
Q 012641 189 IKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYT-MIKEFENKFFQSMHALRVLDSSQNAKLSKL---HV 264 (459)
Q Consensus 189 ~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l---P~ 264 (459)
...+......+++.+.+.++ .++.+| .+ .+++|++|++++| .+..+ . +..+++|++|++++| .+..+ |.
T Consensus 298 ~~l~~l~~~~~L~~L~l~~n-~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n-~l~~~~~~~~ 370 (606)
T 3vq2_A 298 KYLEDVPKHFKWQSLSIIRC-QLKQFP-TL-DLPFLKSLTLTMNKGSISF--K-KVALPSLSYLDLSRN-ALSFSGCCSY 370 (606)
T ss_dssp CCCCCCCTTCCCSEEEEESC-CCSSCC-CC-CCSSCCEEEEESCSSCEEC--C-CCCCTTCCEEECCSS-CEEEEEECCH
T ss_pred hhhhhccccccCCEEEcccc-cCcccc-cC-CCCccceeeccCCcCccch--h-hccCCCCCEEECcCC-ccCCCcchhh
Confidence 33333344445555566555 445553 33 4555555555544 11111 1 334445555555555 44433 44
Q ss_pred cccCCCCCCEEEcCCCCCcccCHHHHHh------------hhhCCC-CcCCCCCCCCEeeecCCCCCCcCCCCCCCCccc
Q 012641 265 GEGELIDLQYLNLSNTNICELPIGIKKN------------LKAIPA-GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV 331 (459)
Q Consensus 265 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L------------l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 331 (459)
.++.+++|++|++++|.+..+|..+..+ +..++. ..+.++++|++|++++|.. ..
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------------~~ 438 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT------------KI 438 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC------------EE
T ss_pred hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC------------Cc
Confidence 4445555555555555544444332222 111211 2256666666666666655 33
Q ss_pred cchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCC
Q 012641 332 LLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCS 411 (459)
Q Consensus 332 ~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~ 411 (459)
..+..++.+++|+.|++..+..... .++........|+.|+++.+.+..+. +.++ ..+++|++|++++|.
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~--~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDN-TLSNVFANTTNLTFLDLSKCQLEQIS-------WGVF--DTLHRLQLLNMSHNN 508 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSCCCEEC-------TTTT--TTCTTCCEEECCSSC
T ss_pred cchhhhcCCCCCCEEECCCCcCCCc-chHHhhccCCCCCEEECCCCcCCccC-------hhhh--cccccCCEEECCCCc
Confidence 3455566677777776643221110 01222222234555555433332221 1111 235566666666665
Q ss_pred CCCC-c-ccccCCCcceeecccCcchhhhcc
Q 012641 412 IKDL-T-CILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 412 l~~l-p-~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
+..+ | .++.+++|++|++++| +++.+|.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~ 538 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFN-RIETSKG 538 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTS-CCCCEES
T ss_pred CCCcCHHHccCCCcCCEEECCCC-cCcccCH
Confidence 5444 2 2555666666666653 3555544
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-16 Score=148.34 Aligned_cols=217 Identities=18% Similarity=0.155 Sum_probs=155.4
Q ss_pred EEecCCCcccccc--ccccccceEEEeecCCCcccc---CCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccC
Q 012641 181 VFQETDKSIKVQE--TASWNEAVRVSLWRSPSIDSL---SPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQ 255 (459)
Q Consensus 181 ~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~ 255 (459)
+...+.....++. ....++++.|.+.++ .+..+ +..+..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 33 L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQH 110 (306)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTT
T ss_pred EECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEECCC
Confidence 3444445555554 346788999999998 77654 34445689999999999988888877 88999999999999
Q ss_pred CCCcccccc--cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccc
Q 012641 256 NAKLSKLHV--GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL 333 (459)
Q Consensus 256 ~~~i~~lP~--~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 333 (459)
| .+..+|. .+..+++|++|++++|.+..++. .. +.++++|++|++++|.+. ....
T Consensus 111 n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~-~~~l~~L~~L~l~~n~l~-----------~~~~ 167 (306)
T 2z66_A 111 S-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----------GI-FNGLSSLEVLKMAGNSFQ-----------ENFL 167 (306)
T ss_dssp S-EEESSTTTTTTTTCTTCCEEECTTSCCEECST----------TT-TTTCTTCCEEECTTCEEG-----------GGEE
T ss_pred C-cccccccchhhhhccCCCEEECCCCcCCccch----------hh-cccCcCCCEEECCCCccc-----------cccc
Confidence 9 9988864 78999999999999998876532 23 788999999999988762 1135
Q ss_pred hhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC
Q 012641 334 LEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK 413 (459)
Q Consensus 334 ~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~ 413 (459)
+..+..+++|+.|+++.+....+. +........|+.|+++.+.+..+....+ ..+++|+.|++++|.+.
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFPY---------KCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBCCSGGG---------TTCTTCCEEECTTSCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCccChhhc---------cCcccCCEeECCCCCCc
Confidence 667788899999988644332210 1111222346666666665554422111 34789999999999666
Q ss_pred CCc--ccccCC-CcceeecccCc
Q 012641 414 DLT--CILYIP-RLRFLFAKDCP 433 (459)
Q Consensus 414 ~lp--~l~~l~-~L~~L~l~~c~ 433 (459)
..+ .+..++ +|++|++++++
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCHHHHHhhhccCCEEEccCCC
Confidence 654 377775 99999998843
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.5e-16 Score=159.93 Aligned_cols=208 Identities=22% Similarity=0.184 Sum_probs=147.1
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
..++.+.+.++ .+..+|..+. ++|++|++++|.+..+|. .+++|++|+|++| .++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEEC
Confidence 35889999999 9999976555 899999999999998887 5799999999999 9999998 7899999999
Q ss_pred CCCCCcccCHHHHHh---------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc---------
Q 012641 278 SNTNICELPIGIKKN---------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES--------- 339 (459)
Q Consensus 278 ~~~~l~~lp~~i~~L---------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------- 339 (459)
++|.++.+|..+.+| +..+|.. +++|++|++++|.+..++ ..+..+..
T Consensus 109 s~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~----------~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 109 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLP----------ALPSELCKLWAYNNQLT 174 (622)
T ss_dssp CSCCCCCCCCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSCCS
T ss_pred cCCcCCCCCCCCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcC----------CccCCCCEEECCCCCCC
Confidence 999999988744444 5667764 488999999998875421 12222222
Q ss_pred -----cccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCc-------cccCcccc-CCccCcccccCccEEE
Q 012641 340 -----LKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL-------IDISSSSL-TTMMKGHFSQNLQDLS 406 (459)
Q Consensus 340 -----L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l-------~~~~l~~~-~~~i~~~~l~~L~~L~ 406 (459)
+++|+.|+++.+....+ +.. ...|+.|.++.+.+..+ ..+++... -..++ ..+++|+.|+
T Consensus 175 ~l~~~~~~L~~L~Ls~N~l~~l---~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp-~~l~~L~~L~ 247 (622)
T 3g06_A 175 SLPMLPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP-VLPSELKELM 247 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEE
T ss_pred CCcccCCCCcEEECCCCCCCCC---CCc---cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC-CCCCcCcEEE
Confidence 37777777765433332 221 23566666655544433 22333321 11233 4567888888
Q ss_pred EecCCCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 407 IINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 407 L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
+++|.++.+|. .+++|++|++++| +++.+|.
T Consensus 248 Ls~N~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 248 VSGNRLTSLPM--LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECCSS-CCCSCCG
T ss_pred CCCCCCCcCCc--ccccCcEEeCCCC-CCCcCCH
Confidence 88888888877 5788899999884 6777765
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-15 Score=148.04 Aligned_cols=179 Identities=18% Similarity=0.234 Sum_probs=99.9
Q ss_pred cccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCE
Q 012641 197 WNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQY 274 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~ 274 (459)
+.+++.|.+.+| .+..+++ .+..+++|++|++++|.+..++...|..+++|++|++++|..+..+|. .+..+++|++
T Consensus 111 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 111 LANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp CSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 345555555555 5555542 345555555555555555555554455555555555555334444433 3555556666
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
|++++|.++.+|. +..+++|++|++++|.+ ....+..+..+++|+.|++..+...
T Consensus 190 L~L~~n~l~~~~~-------------~~~l~~L~~L~Ls~N~l------------~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 190 LNLAMCNLREIPN-------------LTPLIKLDELDLSGNHL------------SAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp EECTTSCCSSCCC-------------CTTCSSCCEEECTTSCC------------CEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ecCCCCcCccccc-------------cCCCcccCEEECCCCcc------------CccChhhhccCccCCEEECCCCcee
Confidence 6666655555442 67777777777777766 3344567777788888877543322
Q ss_pred hhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCC
Q 012641 355 SLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSI 412 (459)
Q Consensus 355 ~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l 412 (459)
.+.. ........|+.|+++.+.+..+....+ ..+++|+.|+|++|.+
T Consensus 245 ~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 245 VIER--NAFDNLQSLVEINLAHNNLTLLPHDLF---------TPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECT--TSSTTCTTCCEEECTTSCCCCCCTTTT---------SSCTTCCEEECCSSCE
T ss_pred EECh--hhhcCCCCCCEEECCCCCCCccChhHh---------ccccCCCEEEcCCCCc
Confidence 2110 111112345566665555544422111 2478999999999943
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-16 Score=165.21 Aligned_cols=215 Identities=12% Similarity=0.078 Sum_probs=143.3
Q ss_pred ccccccceEEEeecCCCccc------------------cCCCCC--CCCcceeeeeeccccc-ccchhHHhcCCCccEEE
Q 012641 194 TASWNEAVRVSLWRSPSIDS------------------LSPTPP--CCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLD 252 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~ 252 (459)
...+++++.|.+.+| .+.. +|..+. ++++|++|++++|.+. .+|.. ++.+++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEE
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEE
Confidence 445678999999999 7887 888888 9999999999999654 56655 89999999999
Q ss_pred ccCCCC-cc--cccccccCC------CCCCEEEcCCCCCcccCH--HHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcC
Q 012641 253 SSQNAK-LS--KLHVGEGEL------IDLQYLNLSNTNICELPI--GIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFN 321 (459)
Q Consensus 253 L~~~~~-i~--~lP~~i~~L------~~L~~L~l~~~~l~~lp~--~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 321 (459)
+++| . ++ .+|..++.+ ++|++|++++|.+..+|. . ++++++|++|++++|.+
T Consensus 280 Ls~n-~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~------------l~~l~~L~~L~L~~N~l---- 342 (636)
T 4eco_A 280 VACN-RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS------------LQKMKKLGMLECLYNQL---- 342 (636)
T ss_dssp CTTC-TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH------------HTTCTTCCEEECCSCCC----
T ss_pred CcCC-CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh------------hccCCCCCEEeCcCCcC----
Confidence 9999 6 77 489988887 999999999999888876 5 55566666666666554
Q ss_pred CCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhh-hhhhhccCCCCCCcc------------ccCcc
Q 012641 322 YGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSC-VRRQVMGLPELSSLI------------DISSS 388 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~-L~~L~l~~~~l~~l~------------~~~l~ 388 (459)
.+..+ .++.+++|+.|+++.+... .++........ |+.|+++.+.+..++ .+++.
T Consensus 343 --------~g~ip-~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 343 --------EGKLP-AFGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp --------EEECC-CCEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECC
T ss_pred --------ccchh-hhCCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECc
Confidence 22233 4555555555555432222 12211111122 444444333332221 11121
Q ss_pred c------cCCccCc-----ccccCccEEEEecCCCCCCcc--cccCCCcceeecccCcchhhhcc
Q 012641 389 S------LTTMMKG-----HFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 389 ~------~~~~i~~-----~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
. .|.+++. -.+++|++|++++|.+..+|. +..+++|++|++++ +++..++.
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N~l~~i~~ 474 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-NMLTEIPK 474 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS-SCCSBCCS
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC-CCCCCcCH
Confidence 1 1222220 135689999999998888885 45689999999998 55667766
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=154.01 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=40.0
Q ss_pred cccceEEEeecCCCcccc-CCCCCCCCcceeeeeecccccc--cchhHHhcCCCccEEEccCCCCcccc-ccc-ccCCCC
Q 012641 197 WNEAVRVSLWRSPSIDSL-SPTPPCCPRLLTLLVRYTMIKE--FENKFFQSMHALRVLDSSQNAKLSKL-HVG-EGELID 271 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~-i~~L~~ 271 (459)
.++++.|.+.+| .+..+ |..+..+++|++|++++|.+.. .+...+..+++|++|++++| .+..+ |.. ++.+++
T Consensus 78 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 78 LSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRR 155 (455)
T ss_dssp CTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTT
T ss_pred cccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCc
Confidence 344555555554 44433 2344445555555555554432 11122444555555555555 44444 332 455555
Q ss_pred CCEEEcCCCCCcc
Q 012641 272 LQYLNLSNTNICE 284 (459)
Q Consensus 272 L~~L~l~~~~l~~ 284 (459)
|++|++++|.+..
T Consensus 156 L~~L~L~~n~l~~ 168 (455)
T 3v47_A 156 FHVLDLTFNKVKS 168 (455)
T ss_dssp CCEEECTTCCBSC
T ss_pred ccEEeCCCCcccc
Confidence 5555555555443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=155.84 Aligned_cols=147 Identities=19% Similarity=0.128 Sum_probs=113.0
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.++.+.+.+...+|... ...++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n- 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-
Confidence 34556666777777532 367999999999 888875 46788999999999999988888877999999999999999
Q ss_pred Cccccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh
Q 012641 258 KLSKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE 336 (459)
Q Consensus 258 ~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.+..+| ..++.+++|++|++++|.+..+|.. . ++++++|++|++++|.+. ....+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----------~-~~~l~~L~~L~L~~n~l~-----------~~~lp~~ 144 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENF----------P-IGHLKTLKELNVAHNLIQ-----------SFKLPEY 144 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTC----------S-CTTCTTCCEEECCSSCCC-----------CCCCCGG
T ss_pred cCCccCHhhhcCccccccccccccccccCCCc----------c-ccccccccEEecCCCccc-----------eecChhh
Confidence 888885 6789999999999999998887641 1 667777777777776652 1124556
Q ss_pred hhccccCceeEEEE
Q 012641 337 LESLKHLQEISVII 350 (459)
Q Consensus 337 l~~L~~L~~L~l~~ 350 (459)
++++++|+.|+++.
T Consensus 145 ~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 145 FSNLTNLEHLDLSS 158 (570)
T ss_dssp GGGCTTCCEEECTT
T ss_pred hcccCCCCEEeCcC
Confidence 66666666666643
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-16 Score=166.27 Aligned_cols=120 Identities=22% Similarity=0.285 Sum_probs=73.8
Q ss_pred ccccccceEEEeecCCC-ccc--cCC-------CCCCCCcceeeeeecccccccch-hHHhcCCCccEEEccCCCCcccc
Q 012641 194 TASWNEAVRVSLWRSPS-IDS--LSP-------TPPCCPRLLTLLVRYTMIKEFEN-KFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~-~~~--~~~-------~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
...+++++.|.+.+| . +.. +|. .+..+++|+.|++++|.+..+|. ..++.+++|++|++++| .+..+
T Consensus 511 l~~L~~L~~L~Ls~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~l 588 (876)
T 4ecn_A 511 LYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHL 588 (876)
T ss_dssp GGGCSSCCEEECTTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBC
T ss_pred HhCCCCCCEEECcCC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccc
Confidence 445567777777777 4 442 432 33445577777777776666766 22777777777777777 66677
Q ss_pred cccccCCCCCCEEEcCCCCCcccCHHHHHh-------------hhhCCCCcCCCCCC--CCEeeecCCCC
Q 012641 263 HVGEGELIDLQYLNLSNTNICELPIGIKKN-------------LKAIPAGMLSSLLS--LRVFSWVPTRY 317 (459)
Q Consensus 263 P~~i~~L~~L~~L~l~~~~l~~lp~~i~~L-------------l~~lp~~~i~~L~~--L~~L~l~~~~~ 317 (459)
| .++.+++|++|++++|.+..+|.++..+ +..+|.. +..+.. |+.|++++|.+
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~-~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI-FNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSC-CCTTCSSCEEEEECCSSCT
T ss_pred h-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchh-hhccccCCCCEEECcCCcC
Confidence 7 6777777777777777766666543321 3345544 444433 66666665554
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=156.06 Aligned_cols=219 Identities=13% Similarity=0.105 Sum_probs=107.5
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc-ccccc-ccCCCCCCE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS-KLHVG-EGELIDLQY 274 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~-i~~L~~L~~ 274 (459)
.++++.+.+.++ .+..+|..+..+++|++|++++|.+..+++..+..+++|++|++++| .+. .+|.. ++.+++|++
T Consensus 277 l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN-TKRLELGTGCLENLENLRE 354 (606)
T ss_dssp CTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC-SSCCBCCSSTTTTCTTCCE
T ss_pred ccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC-CcccccchhhhhccCcCCE
Confidence 345555555555 55555544555555555555555554444433555555555555555 333 34332 455555555
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
|++++|.+..++ ..|.. +.++++|++|++++|.+ ....+..++.+++|+.|++..+...
T Consensus 355 L~l~~n~l~~~~--------~~~~~-~~~l~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 355 LDLSHDDIETSD--------CCNLQ-LRNLSHLQSLNLSYNEP------------LSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp EECCSSCCCEEE--------ESTTT-TTTCTTCCEEECCSCSC------------EEECTTTTTTCTTCSEEECTTCCEE
T ss_pred EECCCCcccccc--------Ccchh-cccCCCCCEEECCCCcC------------CcCCHHHhcCCccCCeEECCCCcCC
Confidence 555555554431 01223 55566666666665554 2233445555556665555432211
Q ss_pred hhhhhhcchhHHhhhhhhhccCCC-----------CCCccccCcccc-------CCccCcccccCccEEEEecCCCCCCc
Q 012641 355 SLNKLKSSSKLQSCVRRQVMGLPE-----------LSSLIDISSSSL-------TTMMKGHFSQNLQDLSIINCSIKDLT 416 (459)
Q Consensus 355 ~~~~l~~~~~l~~~L~~L~l~~~~-----------l~~l~~~~l~~~-------~~~i~~~~l~~L~~L~L~~~~l~~lp 416 (459)
.... .........|+.|+++.+. +++|..+++.+. +..-....+++|++|++++|.+..++
T Consensus 414 ~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 414 VKDA-QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp CCTT-CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred Cccc-chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 1100 0001111234444442222 222222233221 00001134788888888888666664
Q ss_pred --ccccCCCcceeecccCcchhhhcc
Q 012641 417 --CILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 417 --~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.++.+++|++|+++++ ++..++.
T Consensus 493 ~~~~~~l~~L~~L~Ls~N-~l~~~~~ 517 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHN-RLTSSSI 517 (606)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCGGGG
T ss_pred hhhhccccCCCEEECCCC-ccCcCCh
Confidence 3778888888888884 4555544
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=161.54 Aligned_cols=140 Identities=19% Similarity=0.176 Sum_probs=93.4
Q ss_pred ccccceEEEeecCCCcc-ccCCCCCC-CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc-ccccc-ccCCCC
Q 012641 196 SWNEAVRVSLWRSPSID-SLSPTPPC-CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS-KLHVG-EGELID 271 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~-i~~L~~ 271 (459)
..++++.|.+.+| .+. .+|..+.. +++|++|++++|.+....+..++.+++|++|++++| .+. .+|.. ++.+++
T Consensus 267 ~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 267 PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRG 344 (768)
T ss_dssp CCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTT
T ss_pred ccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCC
Confidence 4456777777776 554 55555555 488888888888766433334888888888888888 776 77765 788888
Q ss_pred CCEEEcCCCCCc-ccCHHHHHh--------------hhhCCCCcCCC--CCCCCEeeecCCCCCCcCCCCCCCCccccch
Q 012641 272 LQYLNLSNTNIC-ELPIGIKKN--------------LKAIPAGMLSS--LLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL 334 (459)
Q Consensus 272 L~~L~l~~~~l~-~lp~~i~~L--------------l~~lp~~~i~~--L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
|++|++++|.+. .+|..+..+ ...+|.. +.. +++|++|++.+|.+ .+..+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l------------~~~~p 411 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGF------------TGKIP 411 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEE------------EEECC
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCcc------------ccccC
Confidence 888888888776 777776654 1234444 444 66677777776665 33455
Q ss_pred hhhhccccCceeEEEE
Q 012641 335 EELESLKHLQEISVII 350 (459)
Q Consensus 335 ~~l~~L~~L~~L~l~~ 350 (459)
..++++++|+.|+++.
T Consensus 412 ~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSF 427 (768)
T ss_dssp GGGGGCTTCCEEECCS
T ss_pred HHHhcCCCCCEEECcC
Confidence 5566666666666643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=155.17 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=113.2
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
++++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++ +..+++|++|+|++| .++.+|.. ++|++|+
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLVG----PSIETLH 105 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEEC----TTCCEEE
T ss_pred CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCCC----CCcCEEE
Confidence 47888888888 777765 467788888888888887776665 788888888888888 88777643 6788888
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhh
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSL 356 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 356 (459)
+++|.+..+|. ..+++|++|++++|.+ ....+..++++++|+.|+++.+.....
T Consensus 106 L~~N~l~~~~~--------------~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 106 AANNNISRVSC--------------SRGQGKKNIYLANNKI------------TMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp CCSSCCCCEEE--------------CCCSSCEEEECCSSCC------------CSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred CcCCcCCCCCc--------------cccCCCCEEECCCCCC------------CCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 88887776642 2345556666655554 222333445555555555543322211
Q ss_pred hhhhcchhHHhhhhhhhccCCCCCCc---------cccCccc-----cCCccCcccccCccEEEEecCCCCCCcc-cccC
Q 012641 357 NKLKSSSKLQSCVRRQVMGLPELSSL---------IDISSSS-----LTTMMKGHFSQNLQDLSIINCSIKDLTC-ILYI 421 (459)
Q Consensus 357 ~~l~~~~~l~~~L~~L~l~~~~l~~l---------~~~~l~~-----~~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l 421 (459)
.. .........|+.|+++.+.+..+ ..+++.. .+..+ ..+++|+.|+|++|.+..+|. ++.+
T Consensus 160 ~~-~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 160 NF-AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF--QSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp EG-GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGG--GGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred Ch-HHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhH--cCCCCccEEEecCCcCcccchhhccC
Confidence 00 00000112344444433333222 1111111 01111 235666666666666656554 5666
Q ss_pred CCcceeecccCc
Q 012641 422 PRLRFLFAKDCP 433 (459)
Q Consensus 422 ~~L~~L~l~~c~ 433 (459)
++|+.|++++++
T Consensus 237 ~~L~~L~l~~N~ 248 (487)
T 3oja_A 237 QNLEHFDLRGNG 248 (487)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEcCCCC
Confidence 666666666644
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-16 Score=147.62 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=64.0
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
++++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++ +..+++|++|++++| .++.+|. .++|++|+
T Consensus 34 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (317)
T ss_dssp GGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEEE
Confidence 46777777777 666664 345677777777777776665554 677777777777777 7766653 26677777
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+++|.+..+|. ..+++|++|++++|.+
T Consensus 106 l~~n~l~~~~~--------------~~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 106 AANNNISRVSC--------------SRGQGKKNIYLANNKI 132 (317)
T ss_dssp CCSSCCSEEEE--------------CCCSSCEEEECCSSCC
T ss_pred CCCCccCCcCc--------------cccCCCCEEECCCCCC
Confidence 77776665542 2244555555555554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=148.75 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=90.8
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~ 279 (459)
+.+.+.++ .+..+|..+. ++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+++|++|++++
T Consensus 3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCC-Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCC
Confidence 57889999 8999976555 89999999999999998777999999999999999 89887 78899999999999999
Q ss_pred CCCcccCHHHHHh------------hhh--CCCCcCCCCCCCCEeeecCCCC
Q 012641 280 TNICELPIGIKKN------------LKA--IPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 280 ~~l~~lp~~i~~L------------l~~--lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
|.++.+|.. .+ +.. +|.. ++++++|++|++++|.+
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSC
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCccc
Confidence 999998864 22 332 3444 66677777777766655
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=156.39 Aligned_cols=126 Identities=18% Similarity=0.214 Sum_probs=99.3
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDL 272 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 272 (459)
....+..++.|.+.++ .+..+ +.+..+++|+.|++++|.+..+++ +..+++|++|+|++| .+..+| .++.+++|
T Consensus 38 ~~~~L~~L~~L~l~~n-~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 38 TQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKL 111 (605)
T ss_dssp CHHHHTTCCCCBCTTC-CCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTC
T ss_pred chhcCCCCCEEECcCC-CCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCC
Confidence 3345567888888888 78777 567888888899888888888776 888888999999888 888776 58888889
Q ss_pred CEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 273 QYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
++|+|++|.+..+|. +.+|++|+.|++++|.+.. +..++.|++|+.|+++.+
T Consensus 112 ~~L~Ls~N~l~~l~~-------------l~~l~~L~~L~Ls~N~l~~--------------l~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 112 KSLSLEHNGISDING-------------LVHLPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CEEECTTSCCCCCGG-------------GGGCTTCSEEECCSSCCCC--------------CGGGGSCTTCSEEECCSS
T ss_pred CEEEecCCCCCCCcc-------------ccCCCccCEEECCCCccCC--------------chhhcccCCCCEEECcCC
Confidence 999998888877653 7788888888888887631 256778888888887543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=140.63 Aligned_cols=194 Identities=19% Similarity=0.173 Sum_probs=142.4
Q ss_pred CccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCCCCCcccCHH
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIG 288 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~ 288 (459)
.+..+|..+. ++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .++.+++|++|++++|.+..+|.
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 93 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLAL- 93 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECT-
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccCh-
Confidence 5666654443 57999999999999888866999999999999999 9988864 78999999999999999987753
Q ss_pred HHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhh
Q 012641 289 IKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSC 368 (459)
Q Consensus 289 i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~ 368 (459)
.. +.++++|++|++.+|.+. ......++++++|+.|+++.+....+. ++........
T Consensus 94 ---------~~-~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~ 150 (276)
T 2z62_A 94 ---------GA-FSGLSSLQKLVAVETNLA------------SLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTN 150 (276)
T ss_dssp ---------TT-TTTCTTCCEEECTTSCCC------------CSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTT
T ss_pred ---------hh-hcCCccccEEECCCCCcc------------ccCchhcccCCCCCEEECcCCccceec-CchhhccCCC
Confidence 23 899999999999999873 223335788999999999755433211 1222222345
Q ss_pred hhhhhccCCCCCCccccCccccCCccCcccccCcc----EEEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 369 VRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQ----DLSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 369 L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~----~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
|+.|+++.+.+..+....+ ..+++|+ .|++++|.+..++. .....+|+.|++++ ++++.++.
T Consensus 151 L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~ 217 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDL---------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT-NQLKSVPD 217 (276)
T ss_dssp CCEEECCSSCCCEECGGGG---------HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS-SCCSCCCT
T ss_pred CCEEECCCCCCCcCCHHHh---------hhhhhccccceeeecCCCcccccCccccCCCcccEEECCC-CceeecCH
Confidence 7777776666654422111 1234444 89999998888775 55566999999998 45877766
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=150.02 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=154.5
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDL 272 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 272 (459)
....+++++.+.+.++ .+..+ +.+..+++|++|++++|.+..+| ++.+++|++|++++| .++.+| ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITDM-TGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCCC-TTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred ChhHcCCCCEEEccCC-CcccC-hhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence 3445678999999999 89888 57889999999999999988885 889999999999999 999886 9999999
Q ss_pred CEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 273 QYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
++|++++|.+..+| ++++++|++|++++|.+.. . .++.+++|+.|++..+.
T Consensus 109 ~~L~L~~N~l~~l~--------------~~~l~~L~~L~l~~N~l~~-------------l--~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--------------VSQNPLLTYLNCARNTLTE-------------I--DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp CEEECCSSCCSCCC--------------CTTCTTCCEEECTTSCCSC-------------C--CCTTCTTCCEEECTTCS
T ss_pred CEEECCCCcCCeec--------------CCCCCcCCEEECCCCccce-------------e--ccccCCcCCEEECCCCC
Confidence 99999999998775 7899999999999998732 1 37789999999986442
Q ss_pred hhhhhhhhcchhHHhhhhhhhccCCCCCCccc--------cCcccc-CCccCcccccCccEEEEecCCCCCCcccccCCC
Q 012641 353 LDSLNKLKSSSKLQSCVRRQVMGLPELSSLID--------ISSSSL-TTMMKGHFSQNLQDLSIINCSIKDLTCILYIPR 423 (459)
Q Consensus 353 ~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~--------~~l~~~-~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~ 423 (459)
.+..+ . ......|+.|+++.+.++.++. +++... -..++...+++|+.|++++|.++.+| ++.+++
T Consensus 160 --~~~~~-~-~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~ 234 (457)
T 3bz5_A 160 --KITKL-D-VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQ 234 (457)
T ss_dssp --CCCCC-C-CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTT
T ss_pred --ccccc-c-cccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCC
Confidence 11111 1 1123457777776655554432 222221 11123355788999999999888887 788899
Q ss_pred cceeecccCcchhhhcc
Q 012641 424 LRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 424 L~~L~l~~c~~l~~i~~ 440 (459)
|++|++++ ++++.++.
T Consensus 235 L~~L~l~~-N~l~~~~~ 250 (457)
T 3bz5_A 235 LTYFDCSV-NPLTELDV 250 (457)
T ss_dssp CSEEECCS-SCCSCCCC
T ss_pred CCEEEeeC-CcCCCcCH
Confidence 99999988 45666543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=161.15 Aligned_cols=139 Identities=19% Similarity=0.249 Sum_probs=83.6
Q ss_pred ccceEEEeecCCCcc-ccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSID-SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~~L 275 (459)
..++.+.+.+| .+. .+|..+..+++|++|++++|.+....+..++.+++|++|++++| .+. .+|..++.+++|++|
T Consensus 394 ~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 394 NTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp CCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEE
T ss_pred CCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC-cccCcCCHHHcCCCCceEE
Confidence 34555555555 443 34445555666666666666554322233666666666666666 444 456666666666666
Q ss_pred EcCCCCCc-ccCHHHHHh------------h-hhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccc
Q 012641 276 NLSNTNIC-ELPIGIKKN------------L-KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK 341 (459)
Q Consensus 276 ~l~~~~l~-~lp~~i~~L------------l-~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 341 (459)
++++|.+. .+|..++.+ + ..+|.. ++++++|++|++++|.+ .+..+..++.++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l------------~~~~p~~l~~l~ 538 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF------------SGNIPAELGDCR 538 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCC------------EEECCGGGGGCT
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcc------------cCcCCHHHcCCC
Confidence 66666655 455555443 2 245555 66667777777776665 455677888888
Q ss_pred cCceeEEEEe
Q 012641 342 HLQEISVIIL 351 (459)
Q Consensus 342 ~L~~L~l~~~ 351 (459)
+|+.|+++.+
T Consensus 539 ~L~~L~Ls~N 548 (768)
T 3rgz_A 539 SLIWLDLNTN 548 (768)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 8888887643
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=137.64 Aligned_cols=145 Identities=19% Similarity=0.274 Sum_probs=120.9
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
.+...+.....++.....+.++.|.+.++ .+..+ +.+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 45 ~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 121 (272)
T 3rfs_A 45 QIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QL 121 (272)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred eeeeCCCCcccccccccCCCCcEEECCCC-CCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cC
Confidence 34445555666666777889999999999 88887 67889999999999999999999887899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
..+|.. ++.+++|++|++++|.+..+|.. .++++++|++|++++|.+ ....+..++
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------~~~~l~~L~~L~l~~n~l------------~~~~~~~~~ 178 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-----------VFDKLTNLTELDLSYNQL------------QSLPEGVFD 178 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCC------------CCCCTTTTT
T ss_pred CccCHHHhccCCCCCEEECCCCccCccCHH-----------HhccCccCCEEECCCCCc------------CccCHHHhc
Confidence 988655 78999999999999999877643 278999999999999987 333444567
Q ss_pred ccccCceeEEEE
Q 012641 339 SLKHLQEISVII 350 (459)
Q Consensus 339 ~L~~L~~L~l~~ 350 (459)
.+++|+.|++..
T Consensus 179 ~l~~L~~L~L~~ 190 (272)
T 3rfs_A 179 KLTQLKDLRLYQ 190 (272)
T ss_dssp TCTTCCEEECCS
T ss_pred CCccCCEEECCC
Confidence 889999988853
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=136.36 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=118.4
Q ss_pred EEEecCCCcccccc--ccccccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCC
Q 012641 180 LVFQETDKSIKVQE--TASWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQN 256 (459)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 256 (459)
.+...+......+. .....+++.|.+.++ .+..+++. +..+++|++|++++|.+..++...+..+++|++|++++|
T Consensus 41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp EEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred EEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 34444444555543 456789999999999 89888754 478999999999999999999888899999999999999
Q ss_pred CCcccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchh
Q 012641 257 AKLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE 335 (459)
Q Consensus 257 ~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
.+..+|. .++.+++|++|++++|.+..+|.. .+.++++|++|++++|.+. ...+.
T Consensus 120 -~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------~~~~l~~L~~L~L~~n~l~------------~~~~~ 175 (270)
T 2o6q_A 120 -QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-----------VFDKLTSLKELRLYNNQLK------------RVPEG 175 (270)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCCS------------CCCTT
T ss_pred -ccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-----------HccCCcccceeEecCCcCc------------EeChh
Confidence 9988864 578999999999999999887643 2789999999999999873 33344
Q ss_pred hhhccccCceeEEEE
Q 012641 336 ELESLKHLQEISVII 350 (459)
Q Consensus 336 ~l~~L~~L~~L~l~~ 350 (459)
.+..+++|+.|+++.
T Consensus 176 ~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 176 AFDKLTELKTLKLDN 190 (270)
T ss_dssp TTTTCTTCCEEECCS
T ss_pred HhccCCCcCEEECCC
Confidence 577888899888853
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-16 Score=164.10 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=99.6
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHcCCC-ChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhhcCCCchhH-HHHhhhhc
Q 012641 19 ELAETVADMCGGLPLALVTIGSAMASRR-DPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSYDRLTSETH-KTCFLYCS 96 (459)
Q Consensus 19 ~i~~~iv~kc~GlPLai~~ig~~L~~~~-~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~l-k~cfl~~~ 96 (459)
++..+| |+|+||||+++|+.|+.+. +.++|+.+ ....+..++.+||+.||+ +. |+||+|||
T Consensus 317 eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LA 379 (1221)
T 1vt4_I 317 DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLS 379 (1221)
T ss_dssp THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTT
T ss_pred HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHh
Confidence 344444 9999999999999999853 67888763 124799999999999999 58 99999999
Q ss_pred ccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeehHHHHHHH
Q 012641 97 LFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMA 167 (459)
Q Consensus 97 ~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~hdli~~l~ 167 (459)
+||+++.|.++.++.+|+++| ++.++.++++|+++||++... ....|+|||++++++
T Consensus 380 IFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~---~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 380 VFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQP---KESTISIPSIYLELK 436 (1221)
T ss_dssp SSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCS---SSSEEBCCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeC---CCCEEEehHHHHHHh
Confidence 999999999999999999987 124778999999999999742 267899999999865
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-15 Score=140.84 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=143.2
Q ss_pred ccceEEEeecCCCccc-cCCCC--CCCCcceeeeeeccccccc----chhHHhcCCCccEEEccCCCCccccc-ccccCC
Q 012641 198 NEAVRVSLWRSPSIDS-LSPTP--PCCPRLLTLLVRYTMIKEF----ENKFFQSMHALRVLDSSQNAKLSKLH-VGEGEL 269 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L 269 (459)
..++.+.+.++ .+.. .|..+ ..+++|++|++++|.+... +...+..+++|++|++++| .+..+| ..++.+
T Consensus 91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence 56999999999 6664 44555 7899999999999977642 2233567999999999999 888775 678999
Q ss_pred CCCCEEEcCCCCCcc---cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh-hhccccCce
Q 012641 270 IDLQYLNLSNTNICE---LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE-LESLKHLQE 345 (459)
Q Consensus 270 ~~L~~L~l~~~~l~~---lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~ 345 (459)
++|++|++++|.+.. +|. +.. ++++++|++|++++|.+.. ....+.. ++.+++|+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~---------~~~-~~~l~~L~~L~Ls~N~l~~----------l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMA---------ALC-PHKFPAIQNLALRNTGMET----------PTGVCAALAAAGVQPHS 228 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHT---------TSC-TTSSCCCCSCBCCSSCCCC----------HHHHHHHHHHHTCCCSS
T ss_pred CCCCEEECCCCCCccchhhhH---------HHh-hhcCCCCCEEECCCCCCCc----------hHHHHHHHHhcCCCCCE
Confidence 999999999998753 211 111 5789999999999998732 1222222 478899999
Q ss_pred eEEEEeChhhh--hhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCC
Q 012641 346 ISVIILTLDSL--NKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPR 423 (459)
Q Consensus 346 L~l~~~~~~~~--~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~ 423 (459)
|+++.+..... ..+.... ....|+.|+++.+.++.+ | ...+++|++|+|++|.++.+|.+..+++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~-~~~~L~~L~Ls~N~l~~l--------p----~~~~~~L~~L~Ls~N~l~~~~~~~~l~~ 295 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCM-WSSALNSLNLSFAGLEQV--------P----KGLPAKLRVLDLSSNRLNRAPQPDELPE 295 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCC-CCTTCCCEECCSSCCCSC--------C----SCCCSCCSCEECCSCCCCSCCCTTSCCC
T ss_pred EECCCCCCCccchhhHHhcc-CcCcCCEEECCCCCCCch--------h----hhhcCCCCEEECCCCcCCCCchhhhCCC
Confidence 99965543322 1111111 013567777766666543 2 2234799999999998888888888999
Q ss_pred cceeecccC
Q 012641 424 LRFLFAKDC 432 (459)
Q Consensus 424 L~~L~l~~c 432 (459)
|+.|++++.
T Consensus 296 L~~L~L~~N 304 (310)
T 4glp_A 296 VDNLTLDGN 304 (310)
T ss_dssp CSCEECSST
T ss_pred ccEEECcCC
Confidence 999999983
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-15 Score=145.27 Aligned_cols=188 Identities=12% Similarity=0.107 Sum_probs=135.5
Q ss_pred CCCcceeeeeeccccc-ccchhHH-hcCCCccEEEccCCCCcccccccccCC-----CCCCEEEcCCCCCcccCHHHHHh
Q 012641 220 CCPRLLTLLVRYTMIK-EFENKFF-QSMHALRVLDSSQNAKLSKLHVGEGEL-----IDLQYLNLSNTNICELPIGIKKN 292 (459)
Q Consensus 220 ~~~~L~~L~l~~~~~~-~~~~~~~-~~l~~Lr~L~L~~~~~i~~lP~~i~~L-----~~L~~L~l~~~~l~~lp~~i~~L 292 (459)
.+++|++|++++|.+. .+|..++ ..+++|++|++++| .+..+|..++.+ ++|++|++++|.+..+|.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~----- 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC----- 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-----
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-----
Confidence 5788999999999876 5666532 88999999999999 888888777776 899999999998887652
Q ss_pred hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh--hccccCceeEEEEeChhhhhhhhcc-hhHHhhh
Q 012641 293 LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL--ESLKHLQEISVIILTLDSLNKLKSS-SKLQSCV 369 (459)
Q Consensus 293 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~l~~~-~~l~~~L 369 (459)
.. ++++++|++|++++|.... ....+..+ +.+++|+.|+++.+....+..+... ......|
T Consensus 167 -----~~-~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 167 -----EQ-VRVFPALSTLDLSDNPELG----------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp -----TT-CCCCSSCCEEECCSCTTCH----------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred -----HH-hccCCCCCEEECCCCCcCc----------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 23 8999999999999998521 12234455 7899999999976554433332211 1122357
Q ss_pred hhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 370 RRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 370 ~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
+.|+++.+.+...... . ....+++|++|++++|.++.+|. +. ++|++|++++ ++++.+|.
T Consensus 231 ~~L~Ls~N~l~~~~~~------~--~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~ 291 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGA------P--SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSY-NRLDRNPS 291 (312)
T ss_dssp SEEECTTSCCCSSCCC------S--CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCS-SCCCSCCC
T ss_pred CEEECCCCcCCcccch------h--hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCC-CCCCCChh
Confidence 7777766665543100 0 01236899999999998888886 44 8999999998 57777744
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.6e-15 Score=134.80 Aligned_cols=189 Identities=12% Similarity=0.070 Sum_probs=139.4
Q ss_pred CccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC-cccccc-cccCCCCCCEEEcCC-CCCcccC
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK-LSKLHV-GEGELIDLQYLNLSN-TNICELP 286 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-i~~lP~-~i~~L~~L~~L~l~~-~~l~~lp 286 (459)
.++.+|. + .++|++|++++|.+..+++..|..+++|++|++++| . ++.+|. .++.+++|++|++++ |.++.+|
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 4677754 3 348999999999999999877999999999999999 6 988875 689999999999999 8998876
Q ss_pred HHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCc---eeEEEEe-Chhhhhhhhcc
Q 012641 287 IGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ---EISVIIL-TLDSLNKLKSS 362 (459)
Q Consensus 287 ~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~---~L~l~~~-~~~~~~~l~~~ 362 (459)
.. .+.++++|++|++++|.+.. .+. ++.+++|+ .|++..+ ....+.. ..
T Consensus 98 ~~-----------~f~~l~~L~~L~l~~n~l~~-------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~ 150 (239)
T 2xwt_C 98 PD-----------ALKELPLLKFLGIFNTGLKM-------------FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NA 150 (239)
T ss_dssp TT-----------SEECCTTCCEEEEEEECCCS-------------CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TT
T ss_pred HH-----------HhCCCCCCCEEeCCCCCCcc-------------ccc-cccccccccccEEECCCCcchhhcCc--cc
Confidence 42 28899999999999998732 222 66677777 8888754 3322211 00
Q ss_pred hhHHhhhh-hhhccCCCCCCccccCccccCCccCcccccCccEEEEecC-CCCCCcc--cccC-CCcceeecccCcchhh
Q 012641 363 SKLQSCVR-RQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKDLTC--ILYI-PRLRFLFAKDCPSLEE 437 (459)
Q Consensus 363 ~~l~~~L~-~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~lp~--l~~l-~~L~~L~l~~c~~l~~ 437 (459)
......|+ .|+++.+.+..++. ..- ..++|++|++++| .++.+|. +..+ ++|++|++++ ++++.
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~--------~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~ 219 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQG--------YAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTA 219 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECT--------TTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCC
T ss_pred ccchhcceeEEEcCCCCCcccCH--------hhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-Ccccc
Confidence 11123455 56555555543321 111 1268999999999 6999874 7888 9999999998 77888
Q ss_pred hcc
Q 012641 438 IIA 440 (459)
Q Consensus 438 i~~ 440 (459)
++.
T Consensus 220 l~~ 222 (239)
T 2xwt_C 220 LPS 222 (239)
T ss_dssp CCC
T ss_pred CCh
Confidence 777
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=147.55 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=76.4
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEc
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNL 277 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l 277 (459)
..+.+.+.++ .+..+|..+. ++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+++|++|++
T Consensus 32 ~~~~l~ls~~-~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNR-NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTS-CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCC-CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence 3488999999 9999976554 89999999999999998777999999999999999 99988 678999999999999
Q ss_pred CCCCCcccCHH
Q 012641 278 SNTNICELPIG 288 (459)
Q Consensus 278 ~~~~l~~lp~~ 288 (459)
++|.++.+|..
T Consensus 108 s~N~l~~lp~~ 118 (562)
T 3a79_B 108 SHNRLQNISCC 118 (562)
T ss_dssp TTSCCCEECSC
T ss_pred CCCcCCccCcc
Confidence 99999988853
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=127.46 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=96.9
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPA 298 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~ 298 (459)
..+++|+.|++++|.+..+| . +..+++|++|++++| .+..+| .++.+++|++|++++|.+... .|.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~----------~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSD----------KIP 106 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGG----------GSC
T ss_pred hhcCCccEEeccCCCccChH-H-HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcc----------cCh
Confidence 34556666777766666666 2 667777777777777 665554 466777777777777766531 122
Q ss_pred CcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC
Q 012641 299 GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE 378 (459)
Q Consensus 299 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~ 378 (459)
. ++++++|++|++++|.+ ....+..++.+++|+.|+++.+. .
T Consensus 107 ~-l~~l~~L~~L~Ls~n~i------------~~~~~~~l~~l~~L~~L~L~~n~--~----------------------- 148 (197)
T 4ezg_A 107 N-LSGLTSLTLLDISHSAH------------DDSILTKINTLPKVNSIDLSYNG--A----------------------- 148 (197)
T ss_dssp C-CTTCTTCCEEECCSSBC------------BGGGHHHHTTCSSCCEEECCSCT--B-----------------------
T ss_pred h-hcCCCCCCEEEecCCcc------------CcHhHHHHhhCCCCCEEEccCCC--C-----------------------
Confidence 3 66777777777777765 33456666777777777664321 0
Q ss_pred CCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeeccc
Q 012641 379 LSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKD 431 (459)
Q Consensus 379 l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~ 431 (459)
+..++ +...+++|++|++++|.+..++.+..+++|++|++++
T Consensus 149 i~~~~-----------~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 149 ITDIM-----------PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCCCG-----------GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECB
T ss_pred ccccH-----------hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeC
Confidence 00000 0123678888888888888887888888888888887
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=137.32 Aligned_cols=161 Identities=18% Similarity=0.223 Sum_probs=129.6
Q ss_pred CccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHH
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGI 289 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i 289 (459)
.+..+ .....+++|+.|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.+..+|.
T Consensus 35 ~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-- 107 (291)
T 1h6t_A 35 SVTDA-VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-- 107 (291)
T ss_dssp CTTSE-ECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG--
T ss_pred Ccccc-cchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh--
Confidence 34433 344567899999999999888865 899999999999999 9999987 9999999999999999988764
Q ss_pred HHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhh
Q 012641 290 KKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCV 369 (459)
Q Consensus 290 ~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L 369 (459)
+.++++|++|++++|.+.. +..+..+++|+.|+++.+....+
T Consensus 108 -----------l~~l~~L~~L~L~~n~i~~--------------~~~l~~l~~L~~L~l~~n~l~~~------------- 149 (291)
T 1h6t_A 108 -----------LKDLKKLKSLSLEHNGISD--------------INGLVHLPQLESLYLGNNKITDI------------- 149 (291)
T ss_dssp -----------GTTCTTCCEEECTTSCCCC--------------CGGGGGCTTCCEEECCSSCCCCC-------------
T ss_pred -----------hccCCCCCEEECCCCcCCC--------------ChhhcCCCCCCEEEccCCcCCcc-------------
Confidence 8899999999999998732 35688889999988853321111
Q ss_pred hhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 370 RRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 370 ~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.. ...+++|+.|++++|.+..++.+..+++|++|+++++ .++.++.
T Consensus 150 ----------~~--------------l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N-~i~~l~~ 195 (291)
T 1h6t_A 150 ----------TV--------------LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLRA 195 (291)
T ss_dssp ----------GG--------------GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGG
T ss_pred ----------hh--------------hccCCCCCEEEccCCccccchhhcCCCccCEEECCCC-cCCCChh
Confidence 00 1237899999999999999888999999999999984 6666644
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-15 Score=152.27 Aligned_cols=139 Identities=22% Similarity=0.266 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCC-C----CCCcccchhhhhhhhcCCCchhHHHH
Q 012641 17 IRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSG-F----EGMGTRVFPLLKFSYDRLTSETHKTC 91 (459)
Q Consensus 17 ~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~-~----~~~~~~i~~~l~~sy~~L~~~~lk~c 91 (459)
..+.+.+|+++|+|+||||+++|+.|+.+ ...|+.+++.+...... . ......+..++..||+.||+ ..|.|
T Consensus 306 ~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~ 382 (591)
T 1z6t_A 306 LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDY 382 (591)
T ss_dssp SCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHH
T ss_pred ccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHH
Confidence 34678999999999999999999999873 35899999988765432 1 11223688999999999999 69999
Q ss_pred hhhhcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeehHHHHHHHHHHH
Q 012641 92 FLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIA 171 (459)
Q Consensus 92 fl~~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~hdli~~l~~~~~ 171 (459)
|+++|+||+++.|+.+.++.+|.++ .+.+..++++|++++|++... ++....|+||+++++++....
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~-~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDR-NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEE-ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEec-CCCccEEEEcHHHHHHHHhhh
Confidence 9999999999999999999999653 234678899999999998543 233557999999999998773
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=153.91 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=94.8
Q ss_pred cccccccceEEEeecCCCcccc-CCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-cccc--ccC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSL-SPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LHVG--EGE 268 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP~~--i~~ 268 (459)
.....++++.|.+.++.....+ |..+.++++|++|++++|.+..++++.|+++++|++|+|++| .+.. +|.. ++.
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSS
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccc
Confidence 4456788999999998555566 467889999999999999998886666999999999999999 8875 5655 899
Q ss_pred CCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 269 LIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 269 L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
+++|++|++++|.+..++. +.. +++|++|++|++++|.+.
T Consensus 122 L~~L~~L~Ls~N~l~~~~~---------~~~-~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYL---------HPS-FGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CSSCCEEEEESCCCCCCCC---------CGG-GGTCSSCCEEEEESSCCC
T ss_pred cCCCCEEECCCCccccccc---------chh-HhhCCCCCEEECCCCcCC
Confidence 9999999999999887631 123 788999999999888763
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=138.28 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=80.7
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccc-cccchhHHhcCCCccE-EEccCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMI-KEFENKFFQSMHALRV-LDSSQN 256 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~Lr~-L~L~~~ 256 (459)
.+.+.+..++.+|... ..+++.|.+.+| .++.+|+ .+.++++|++|++++|.+ ..+|...|.++.+++. +.+.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3455666777777533 357889999999 8988874 468899999999999975 5577777888887765 566677
Q ss_pred CCcccc-cccccCCCCCCEEEcCCCCCcccCH
Q 012641 257 AKLSKL-HVGEGELIDLQYLNLSNTNICELPI 287 (459)
Q Consensus 257 ~~i~~l-P~~i~~L~~L~~L~l~~~~l~~lp~ 287 (459)
.+..+ |..++.+++|++|++++|.+..+|.
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 91 -NLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp -TCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred -cccccCchhhhhccccccccccccccccCCc
Confidence 88888 4567889999999999998887764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=145.31 Aligned_cols=201 Identities=15% Similarity=0.087 Sum_probs=131.6
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccc--hhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFE--NKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
..++.+.+.++ .+... .....+++|++|++++|.+..++ +..+..+++|++|++++| .+..+|..++.+++|++|
T Consensus 325 ~~L~~L~l~~n-~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L 401 (570)
T 2z63_A 325 KSLKRLTFTSN-KGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 401 (570)
T ss_dssp SSCCEEEEESC-BSCCB-CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred cccCEEeCcCC-ccccc-cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEE
Confidence 44555555554 33322 12256677777777777665442 233777788888888888 777777667778888888
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhh
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDS 355 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 355 (459)
++++|.+..++ |...+.++++|++|++++|.. ....+..+..+++|+.|++..+....
T Consensus 402 ~l~~n~l~~~~----------~~~~~~~l~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 402 DFQHSNLKQMS----------EFSVFLSLRNLIYLDISHTHT------------RVAFNGIFNGLSSLEVLKMAGNSFQE 459 (570)
T ss_dssp ECTTSEEESCT----------TSCTTTTCTTCCEEECTTSCC------------EECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred EccCCcccccc----------chhhhhcCCCCCEEeCcCCcc------------cccchhhhhcCCcCcEEECcCCcCcc
Confidence 88887766542 212278899999999999886 44566778889999999886432210
Q ss_pred hhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCc
Q 012641 356 LNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 356 ~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~ 433 (459)
..++........|+.|+++.+.+..+. +.++ ..+++|++|++++|.++.+|. +..+++|++|++++++
T Consensus 460 -~~~p~~~~~l~~L~~L~l~~n~l~~~~-------~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 460 -NFLPDIFTELRNLTFLDLSQCQLEQLS-------PTAF--NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -GEECSCCTTCTTCCEEECTTSCCCEEC-------TTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccchhhhhcccCCCEEECCCCccccCC-------hhhh--hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 112222222334566666555443331 2222 247899999999998888774 7889999999999844
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=126.93 Aligned_cols=145 Identities=19% Similarity=0.246 Sum_probs=119.3
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+...+..+..+|.... ..++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..+..+++|++|++++| .
T Consensus 18 ~l~~~~~~l~~~p~~~~-~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 94 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP-ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-Q 94 (251)
T ss_dssp EEECTTCCCSSCCSCCC-TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-C
T ss_pred EEecCCCCccccCCCCC-CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-c
Confidence 45556666777765433 68999999999 888876 45788999999999999999988888999999999999999 9
Q ss_pred ccccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
++.+| ..++.+++|++|++++|.++.+|.. .+.++++|++|++++|.+ ....+..+
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~Ls~N~l------------~~~~~~~~ 151 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSG-----------VFDRLTKLKELRLNTNQL------------QSIPAGAF 151 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCC------------CCCCTTTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChh-----------HhccCCcccEEECcCCcC------------CccCHHHc
Confidence 99886 4568999999999999999887643 278999999999999987 33334467
Q ss_pred hccccCceeEEEE
Q 012641 338 ESLKHLQEISVII 350 (459)
Q Consensus 338 ~~L~~L~~L~l~~ 350 (459)
+.+++|+.|+++.
T Consensus 152 ~~l~~L~~L~L~~ 164 (251)
T 3m19_A 152 DKLTNLQTLSLST 164 (251)
T ss_dssp TTCTTCCEEECCS
T ss_pred CcCcCCCEEECCC
Confidence 8888899888853
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=144.78 Aligned_cols=42 Identities=14% Similarity=0.005 Sum_probs=33.2
Q ss_pred cccCccEEEEecCCCCCCcc--cccCCCcceeecccCcchhhhcc
Q 012641 398 FSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 398 ~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.+++|++|+|++|+++.++. ++.+++|++|++++ +++..++.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 559 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKK 559 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCS
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC-CcCCCCCH
Confidence 47888899998888887764 67888899999887 56766665
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=145.76 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=100.5
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-cc---ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCC
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LH---VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIP 297 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP---~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp 297 (459)
.+|+.|.+.+|.+..+|..++..+++|++|++++| .+.. +| ..++.+++|++|++++|.++.+|..-..
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------ 382 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI------ 382 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH------
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhh------
Confidence 56788888888777888776677888888888888 6654 33 3367788888888888888776531111
Q ss_pred CCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCC
Q 012641 298 AGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLP 377 (459)
Q Consensus 298 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~ 377 (459)
+..+++|++|++++|.+. ..+..++.+++|+.|+++.+....+ +.. ....|+.|+++.+
T Consensus 383 ---~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~~~~L~~L~Ls~N~l~~l---~~~--~~~~L~~L~Ls~N 441 (549)
T 2z81_A 383 ---LLTLKNLTSLDISRNTFH-------------PMPDSCQWPEKMRFLNLSSTGIRVV---KTC--IPQTLEVLDVSNN 441 (549)
T ss_dssp ---GGGCTTCCEEECTTCCCC-------------CCCSCCCCCTTCCEEECTTSCCSCC---CTT--SCTTCSEEECCSS
T ss_pred ---hhcCCCCCEEECCCCCCc-------------cCChhhcccccccEEECCCCCcccc---cch--hcCCceEEECCCC
Confidence 445566666666666542 2333445555555555543322211 110 0123444444333
Q ss_pred CCCCc-------cccCcccc-CCccC-cccccCccEEEEecCCCCCCcc--cccCCCcceeecccCc
Q 012641 378 ELSSL-------IDISSSSL-TTMMK-GHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 378 ~l~~l-------~~~~l~~~-~~~i~-~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~ 433 (459)
.++.+ +.+++.+. -..+| ...+++|+.|+|++|.++.+++ ++.+++|++|++++++
T Consensus 442 ~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 442 NLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 33221 11111110 00011 1235666666666665555543 5666666666666644
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-14 Score=149.53 Aligned_cols=187 Identities=17% Similarity=0.094 Sum_probs=92.7
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc-ccc-ccccCCCCCCEEEcCCCCCcccCH-HHHHh------
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS-KLH-VGEGELIDLQYLNLSNTNICELPI-GIKKN------ 292 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L------ 292 (459)
++|+.|++++|.+..+++..+..+++|++|++++| .+. .+| ..++.+++|++|++++|.+..++. .+..+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 34555555555555444444555555555555555 443 233 344555555555555555443321 11111
Q ss_pred ---------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhh--h-
Q 012641 293 ---------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKL--K- 360 (459)
Q Consensus 293 ---------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l--~- 360 (459)
+..+|.. +.++++|++|++++|.+ ....+..+..+++|+.|+++.+....+... +
T Consensus 460 ~l~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l------------~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNI------------ANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp ECTTSCCBCTTCSSCT-TTTCTTCCEEECCSSCC------------CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred hhccccccccccCCcc-cccCCCCCEEECCCCCC------------CcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence 1234555 77777777777777765 223344566777777777765443322110 0
Q ss_pred ---cchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeeccc
Q 012641 361 ---SSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKD 431 (459)
Q Consensus 361 ---~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~ 431 (459)
........|+.|+++.+.+..++...+ ..+++|+.|++++|.++.+|. +..+++|+.|++++
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~---------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVF---------KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CcchhhcCCCCCCEEECCCCCCCCCCHHHc---------ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence 001112335555554444433321111 225556666666665555553 44556666666655
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-15 Score=137.12 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=59.3
Q ss_pred ccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCC
Q 012641 194 TASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQ 273 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~ 273 (459)
...+++++.+.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .++.+|.... .+|+
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--SSCC
T ss_pred hhhcCcCcEEECcCC-Ccccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--Cccc
Confidence 334455666666666 55555 345555666666666665555554 556666666666666 5555554222 5666
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+|++++|.++.+|. +.++++|++|++++|.+
T Consensus 110 ~L~L~~N~l~~~~~-------------l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 110 RLFLDNNELRDTDS-------------LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp EEECCSSCCSBSGG-------------GTTCTTCCEEECTTSCC
T ss_pred EEEccCCccCCChh-------------hcCcccccEEECCCCcC
Confidence 66666666555432 55566666666666554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-14 Score=140.94 Aligned_cols=219 Identities=16% Similarity=0.092 Sum_probs=133.3
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
++++.+.+.+| .+..+| .+..+++|++|++++|.+..+|.. ..+|++|++++| .++.+| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEEC
Confidence 57788888888 777774 677888888888888877777653 358888888888 888887 5888899999999
Q ss_pred CCCCCcccCHHHHHh---------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC------CCCCc-cccchhhhhccc
Q 012641 278 SNTNICELPIGIKKN---------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS------SVPGV-TVLLLEELESLK 341 (459)
Q Consensus 278 ~~~~l~~lp~~i~~L---------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~------~~~~~-~~~~~~~l~~L~ 341 (459)
++|.+..+|.....| +..+|. ++++++|++|++++|.+...+... ++... ....+. .++
T Consensus 203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~---~~~ 277 (454)
T 1jl5_A 203 DNNSLKKLPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE---LPQ 277 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC---CCT
T ss_pred CCCcCCcCCCCcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc---ccC
Confidence 998888776544444 567774 888999999999888765421100 00000 000000 123
Q ss_pred cCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCC-------ccccCcccc-CCccCcccccCccEEEEecCCCC
Q 012641 342 HLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSS-------LIDISSSSL-TTMMKGHFSQNLQDLSIINCSIK 413 (459)
Q Consensus 342 ~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~-------l~~~~l~~~-~~~i~~~~l~~L~~L~L~~~~l~ 413 (459)
+|+.|+++.+....+..+ ...++.|+++.+.+.. |..+++... -..++ ..+++|+.|++++|.++
T Consensus 278 ~L~~L~ls~N~l~~l~~~------~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp-~~~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-ALPPRLERLIASFNHLA 350 (454)
T ss_dssp TCCEEECCSSCCSEESCC------CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCS
T ss_pred cCCEEECcCCccCcccCc------CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccc-ccCCcCCEEECCCCccc
Confidence 455555543322221111 1234555554333322 222222221 11122 23578888888888777
Q ss_pred CCcccccCCCcceeecccCcchhhhc
Q 012641 414 DLTCILYIPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 414 ~lp~l~~l~~L~~L~l~~c~~l~~i~ 439 (459)
.+|. .+++|++|++++ +.+..++
T Consensus 351 ~lp~--~l~~L~~L~L~~-N~l~~l~ 373 (454)
T 1jl5_A 351 EVPE--LPQNLKQLHVEY-NPLREFP 373 (454)
T ss_dssp CCCC--CCTTCCEEECCS-SCCSSCC
T ss_pred cccc--hhhhccEEECCC-CCCCcCC
Confidence 7777 478888888887 4555543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=146.81 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=120.5
Q ss_pred EEEecCCCccccc--cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQ--ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~--~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+...+..+...+ ....+++++.|.+.+| .+...++ +..+++|++|++++|.+..+|.. ++|++|++++|
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~~N- 109 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANN- 109 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEECCSS-
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC-----CCcCEEECcCC-
Confidence 3444444444443 3456678888888888 7776533 77888888888888877666532 56666666666
Q ss_pred CcccccccccCCCCCCEEEcCCCCCcccCH-HHHHh------------hhh-CCCCcCCCCCCCCEeeecCCCCCCcCCC
Q 012641 258 KLSKLHVGEGELIDLQYLNLSNTNICELPI-GIKKN------------LKA-IPAGMLSSLLSLRVFSWVPTRYAGFNYG 323 (459)
Q Consensus 258 ~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L------------l~~-lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 323 (459)
.+..+|.. .+++|++|++++|.+..++. .++.+ +.. .|..+..++++|++|++++|.+..
T Consensus 110 ~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~---- 183 (487)
T 3oja_A 110 NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---- 183 (487)
T ss_dssp CCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE----
T ss_pred cCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc----
Confidence 66655432 34566666666666655422 11111 000 112211245556666665555421
Q ss_pred CCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCcc
Q 012641 324 SSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQ 403 (459)
Q Consensus 324 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~ 403 (459)
......+++|+.|+++.+.... ++........|+.|+++.+.+..+ |.++ ..+++|+
T Consensus 184 ----------~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~l~~l--------p~~l--~~l~~L~ 240 (487)
T 3oja_A 184 ----------VKGQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNKLVLI--------EKAL--RFSQNLE 240 (487)
T ss_dssp ----------EECCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSCCCEE--------CTTC--CCCTTCC
T ss_pred ----------ccccccCCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCcCccc--------chhh--ccCCCCC
Confidence 1122245666666665433222 111112223455555544444332 2232 3478999
Q ss_pred EEEEecCCCC--CCcc-cccCCCcceeeccc
Q 012641 404 DLSIINCSIK--DLTC-ILYIPRLRFLFAKD 431 (459)
Q Consensus 404 ~L~L~~~~l~--~lp~-l~~l~~L~~L~l~~ 431 (459)
.|++++|.+. .+|. ++.++.|+.|++..
T Consensus 241 ~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp EEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 9999999665 5553 78899999888864
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=139.68 Aligned_cols=206 Identities=11% Similarity=0.065 Sum_probs=124.8
Q ss_pred EEEecCCCccccc--cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQ--ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~--~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+...+......+ .....++++.|.+.+| .+..++ .+..+++|++|++++|.+..++. +++|++|++++|
T Consensus 38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n- 109 (317)
T 3o53_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN- 109 (317)
T ss_dssp EEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEE-EETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS-
T ss_pred EEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcch-hhhhcCCCCEEECcCCccccccC-----CCCcCEEECCCC-
Confidence 3444444444443 3455678888888888 777663 37788888888888887766653 378888888888
Q ss_pred CcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 258 KLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 258 ~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
.+..+|.. .+++|++|++++|.+..++.. . ++++++|++|++++|.+ ....+..+
T Consensus 110 ~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~----------~-~~~l~~L~~L~Ls~N~l------------~~~~~~~~ 164 (317)
T 3o53_A 110 NISRVSCS--RGQGKKNIYLANNKITMLRDL----------D-EGCRSRVQYLDLKLNEI------------DTVNFAEL 164 (317)
T ss_dssp CCSEEEEC--CCSSCEEEECCSSCCCSGGGB----------C-TGGGSSEEEEECTTSCC------------CEEEGGGG
T ss_pred ccCCcCcc--ccCCCCEEECCCCCCCCccch----------h-hhccCCCCEEECCCCCC------------CcccHHHH
Confidence 77777643 367788888888887766431 2 56677777777777765 22233344
Q ss_pred -hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCc
Q 012641 338 -ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLT 416 (459)
Q Consensus 338 -~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp 416 (459)
..+++|+.|+++.+....+ +.... ...|+.|+++.+.+..+.. .+ ..+++|++|++++|.++.+|
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~---~~~~~-l~~L~~L~Ls~N~l~~l~~--------~~--~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV---KGQVV-FAKLKTLDLSSNKLAFMGP--------EF--QSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE---ECCCC-CTTCCEEECCSSCCCEECG--------GG--GGGTTCSEEECTTSCCCEEC
T ss_pred hhccCcCCEEECCCCcCccc---ccccc-cccCCEEECCCCcCCcchh--------hh--cccCcccEEECcCCcccchh
Confidence 3567777777654333222 11111 2345555555554443311 11 22566666666666555555
Q ss_pred c-cccCCCcceeecccC
Q 012641 417 C-ILYIPRLRFLFAKDC 432 (459)
Q Consensus 417 ~-l~~l~~L~~L~l~~c 432 (459)
. +..+++|++|+++++
T Consensus 231 ~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TTCCCCTTCCEEECTTC
T ss_pred hHhhcCCCCCEEEccCC
Confidence 4 556666666666653
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=132.89 Aligned_cols=193 Identities=17% Similarity=0.099 Sum_probs=142.4
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+...+..+..+|... .+.++.|.+.+| .+..++ ..+..+++|++|++++|.+..++. ...+++|++|++++| .
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N-~ 88 (290)
T 1p9a_G 14 EVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-Q 88 (290)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-C
T ss_pred EEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC-c
Confidence 3445556666666433 268999999999 887764 567889999999999999888876 478999999999999 9
Q ss_pred cccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 259 LSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 259 i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
+..+|..+..+++|++|++++|.++.+|. +.+.++++|++|++++|.+. ......+.
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~-----------~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~ 145 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPL-----------GALRGLGELQELYLKGNELK------------TLPPGLLT 145 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSCCCCCCS-----------STTTTCTTCCEEECTTSCCC------------CCCTTTTT
T ss_pred CCcCchhhccCCCCCEEECCCCcCcccCH-----------HHHcCCCCCCEEECCCCCCC------------ccChhhcc
Confidence 99999999999999999999999987753 23889999999999999873 33344567
Q ss_pred ccccCceeEEEEeChhhhhhhhcc-hhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC
Q 012641 339 SLKHLQEISVIILTLDSLNKLKSS-SKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK 413 (459)
Q Consensus 339 ~L~~L~~L~l~~~~~~~~~~l~~~-~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~ 413 (459)
.+++|+.|+++.+... .++.. ......|+.|+++.+.++.++ ..+. ..++|+.|+|++|.+.
T Consensus 146 ~l~~L~~L~L~~N~l~---~l~~~~~~~l~~L~~L~L~~N~l~~ip--------~~~~--~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSLYTIP--------KGFF--GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTTSCCS---CCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTT--TTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCCCcCC---ccCHHHhcCcCCCCEEECCCCcCCccC--------hhhc--ccccCCeEEeCCCCcc
Confidence 8899999988654333 22221 122234666666666665442 2222 2568999999988443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=139.31 Aligned_cols=180 Identities=18% Similarity=0.079 Sum_probs=104.4
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
+...+..+..+|.. .++++.+.+.++ .+..+|. .+++|++|++++|.+..++.. .++|++|++++| .++
T Consensus 76 L~l~~~~l~~lp~~--~~~L~~L~l~~n-~l~~lp~---~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~ 144 (454)
T 1jl5_A 76 LELNNLGLSSLPEL--PPHLESLVASCN-SLTELPE---LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLE 144 (454)
T ss_dssp EECTTSCCSCCCSC--CTTCSEEECCSS-CCSSCCC---CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCS
T ss_pred EEecCCccccCCCC--cCCCCEEEccCC-cCCcccc---ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCC
Confidence 33344444444432 256777777777 6666642 236677777777766555431 156777777777 666
Q ss_pred cccccccCCCCCCEEEcCCCCCcccCHHHHHh---------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC------C
Q 012641 261 KLHVGEGELIDLQYLNLSNTNICELPIGIKKN---------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS------S 325 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L---------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~------~ 325 (459)
.+| +++.+++|++|++++|.++.+|..+..| +..+| . ++++++|++|++++|.+...+... +
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~ 221 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNNSLKKLPDLPLSLESIV 221 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCCcCCcCCCCcCcccEEE
Confidence 676 4777777777777777766666554444 45566 3 888889999998888775432110 1
Q ss_pred CCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCC
Q 012641 326 VPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELS 380 (459)
Q Consensus 326 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~ 380 (459)
+....-..+..++.+++|+.|+++.+....+. .. ...|+.|+++.+.+.
T Consensus 222 l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~---~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 222 AGNNILEELPELQNLPFLTTIYADNNLLKTLP---DL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC---SC---CTTCCEEECCSSCCS
T ss_pred CcCCcCCcccccCCCCCCCEEECCCCcCCccc---cc---ccccCEEECCCCccc
Confidence 11111112224777888888888654333322 11 134666666544443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=149.75 Aligned_cols=188 Identities=18% Similarity=0.141 Sum_probs=146.8
Q ss_pred EEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCC
Q 012641 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNI 282 (459)
Q Consensus 203 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l 282 (459)
+.+..+ .+..+ .....+++|+.|.+++|.+..++. +..+++|+.|+|++| .+..+|. ++.+++|++|+|++|.+
T Consensus 26 l~l~~~-~i~~~-~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKK-SVTDA-VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCS-CTTSE-ECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HhccCC-Ccccc-cchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCC
Confidence 334434 44444 445678899999999999888875 899999999999999 9999987 99999999999999999
Q ss_pred cccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcc
Q 012641 283 CELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSS 362 (459)
Q Consensus 283 ~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~ 362 (459)
..+|. +.++++|++|++++|.+. .+..+..|++|+.|+++.+....+..+
T Consensus 100 ~~l~~-------------l~~l~~L~~L~Ls~N~l~--------------~l~~l~~l~~L~~L~Ls~N~l~~l~~l--- 149 (605)
T 1m9s_A 100 KDLSS-------------LKDLKKLKSLSLEHNGIS--------------DINGLVHLPQLESLYLGNNKITDITVL--- 149 (605)
T ss_dssp CCCTT-------------STTCTTCCEEECTTSCCC--------------CCGGGGGCTTCSEEECCSSCCCCCGGG---
T ss_pred CCChh-------------hccCCCCCEEEecCCCCC--------------CCccccCCCccCEEECCCCccCCchhh---
Confidence 87653 899999999999999873 235688999999999976654444222
Q ss_pred hhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCcchhhhc
Q 012641 363 SKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 363 ~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~ 439 (459)
....+|+.|+++.+.+..+.. ...+++|+.|+|++|.+..+|.+..+++|+.|+|++|+ +...|
T Consensus 150 -~~l~~L~~L~Ls~N~l~~~~~-----------l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 150 -SRLTKLDTLSLEDNQISDIVP-----------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp -GSCTTCSEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE-EECCC
T ss_pred -cccCCCCEEECcCCcCCCchh-----------hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc-CcCCc
Confidence 222356777776666554421 23589999999999999999999999999999999854 44433
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-14 Score=147.26 Aligned_cols=148 Identities=18% Similarity=0.122 Sum_probs=125.1
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+-+.+.+++.+|..- ...+++|.+++| .++.++ ..+.++++|++|++++|.+..+++..|.++++|++|+|++| .
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 111 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-c
Confidence 3446667788887533 257999999999 999987 46889999999999999999999988999999999999999 9
Q ss_pred cccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
++.+|. .++.+.+|++|++++|+++.+|. ..+++|++|++|++++|.+. ....+..+
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-----------~~~~~L~~L~~L~Ls~N~l~-----------~~~~~~~~ 169 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLEN-----------FPIGHLKTLKELNVAHNLIQ-----------SFKLPEYF 169 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTT-----------CCCTTCTTCCEEECCSSCCC-----------CCCCCGGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCCh-----------hhhhcCcccCeeccccCccc-----------cCCCchhh
Confidence 999975 57999999999999999988764 23899999999999999873 23456778
Q ss_pred hccccCceeEEEEeC
Q 012641 338 ESLKHLQEISVIILT 352 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~ 352 (459)
+.+++|+.|++..+.
T Consensus 170 ~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 170 SNLTNLEHLDLSSNK 184 (635)
T ss_dssp GGCTTCCEEECCSSC
T ss_pred ccchhhhhhcccCcc
Confidence 899999999987543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=137.27 Aligned_cols=200 Identities=17% Similarity=0.099 Sum_probs=135.7
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccc--cchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCCE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKE--FENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQY 274 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~~ 274 (459)
..++.+.+.++ .+...++....+++|++|++++|.+.. ++. .+..+++|++|++++| .+. ..|..++.+++|++
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCE
Confidence 46788888888 777766777788999999999997653 443 4888999999999999 776 56788889999999
Q ss_pred EEcCCC-CCcc--cCHHHHHhhhhCCCCcCCCCCCCCEeeecCC-CCCCcCCCCCCCCccccchhhhhccc-cCceeEEE
Q 012641 275 LNLSNT-NICE--LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPT-RYAGFNYGSSVPGVTVLLLEELESLK-HLQEISVI 349 (459)
Q Consensus 275 L~l~~~-~l~~--lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~ 349 (459)
|++++| .+.. +|.. +.++++|++|++++| .+. ....+..+..++ +|+.|++.
T Consensus 147 L~L~~~~~l~~~~l~~~------------~~~~~~L~~L~l~~~~~l~-----------~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTL------------LSSCSRLDELNLSWCFDFT-----------EKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp EECTTCBSCCHHHHHHH------------HHHCTTCCEEECCCCTTCC-----------HHHHHHHHHHSCTTCCEEECC
T ss_pred EECCCCCCCCHHHHHHH------------HhcCCCCCEEcCCCCCCcC-----------hHHHHHHHHhcccCCCEEEeC
Confidence 999998 6663 4432 566788999999988 652 223466678888 99999887
Q ss_pred EeChh-hhhhhhcchhHHhhhhhhhccCCC-CCCccccCccccCCccCcccccCccEEEEecC-CCCC--CcccccCCCc
Q 012641 350 ILTLD-SLNKLKSSSKLQSCVRRQVMGLPE-LSSLIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKD--LTCILYIPRL 424 (459)
Q Consensus 350 ~~~~~-~~~~l~~~~~l~~~L~~L~l~~~~-l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~--lp~l~~l~~L 424 (459)
.+... .-..++.......+|+.|+++.+. ++.-. +..+ ..+++|++|++++| .... +..++.+++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-------~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-------FQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-------GGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH-------HHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 54210 002222222233456666664433 22110 1111 24688888888888 3332 2246778888
Q ss_pred ceeecccC
Q 012641 425 RFLFAKDC 432 (459)
Q Consensus 425 ~~L~l~~c 432 (459)
++|++++|
T Consensus 275 ~~L~l~~~ 282 (336)
T 2ast_B 275 KTLQVFGI 282 (336)
T ss_dssp CEEECTTS
T ss_pred CEEeccCc
Confidence 88888887
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=121.85 Aligned_cols=119 Identities=23% Similarity=0.332 Sum_probs=63.5
Q ss_pred EEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCCCC
Q 012641 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTN 281 (459)
Q Consensus 203 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~ 281 (459)
+...++ .+..+|..+. ++|+.|++++|.+..+++..|..+++|++|+|++| .+..+ |..++.+++|++|++++|.
T Consensus 16 v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 16 VDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 344444 4555543332 45566666666555555544555666666666666 55554 4555666666666666665
Q ss_pred CcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEE
Q 012641 282 ICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISV 348 (459)
Q Consensus 282 l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 348 (459)
++.+|.+ ++.++++|++|++++|.+ ....+..+..+++|+.|++
T Consensus 92 l~~l~~~-----------~f~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 92 ITELPKS-----------LFEGLFSLQLLLLNANKI------------NCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp CCCCCTT-----------TTTTCTTCCEEECCSSCC------------CCCCTTTTTTCTTCCEEEC
T ss_pred CCccCHh-----------HccCCCCCCEEECCCCCC------------CEeCHHHcCCCCCCCEEEC
Confidence 5554432 145556666666665554 2223344555555555555
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=132.70 Aligned_cols=172 Identities=17% Similarity=0.185 Sum_probs=110.1
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHh-cCCCccEEEccCCCCccccc-ccccCCCCCCEEEcC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQ-SMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLS 278 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~ 278 (459)
+.+...++ .+..+|..+. +.++.|++++|.+..++...+. .+.+|++|+|++| .+..+| ..++.+++|++|+|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 35666666 6777754433 4577788888877777776566 7788888888888 777775 457778888888888
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
+|.+..+|.. .+.++++|++|++++|.+ ....+..+..+++|+.|+++.+....
T Consensus 97 ~N~l~~~~~~-----------~~~~l~~L~~L~L~~N~i------------~~~~~~~~~~l~~L~~L~L~~N~l~~--- 150 (361)
T 2xot_A 97 SNHLHTLDEF-----------LFSDLQALEVLLLYNNHI------------VVVDRNAFEDMAQLQKLYLSQNQISR--- 150 (361)
T ss_dssp SSCCCEECTT-----------TTTTCTTCCEEECCSSCC------------CEECTTTTTTCTTCCEEECCSSCCCS---
T ss_pred CCcCCcCCHH-----------HhCCCcCCCEEECCCCcc------------cEECHHHhCCcccCCEEECCCCcCCe---
Confidence 8877766532 267788888888888776 33345566777777777764332111
Q ss_pred hhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCC--cceeeccc
Q 012641 359 LKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPR--LRFLFAKD 431 (459)
Q Consensus 359 l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~--L~~L~l~~ 431 (459)
+....+.. ...+++|+.|+|++|.++.+|. +..++. |+.|++.+
T Consensus 151 -----------------------l~~~~~~~------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 151 -----------------------FPVELIKD------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp -----------------------CCGGGTC----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred -----------------------eCHHHhcC------cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 10000000 0236677777777777777763 566665 36677766
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=120.85 Aligned_cols=84 Identities=27% Similarity=0.388 Sum_probs=42.7
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCc
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~ 300 (459)
++|++|++++|.+..+++..+..+++|++|++++| .++.+|.. ++.+++|++|++++|.+..+|.. .
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------~ 95 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG-----------V 95 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------T
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHh-----------H
Confidence 34555555555555555544455555555555555 55555432 34555555555555555444321 1
Q ss_pred CCCCCCCCEeeecCCCC
Q 012641 301 LSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~ 317 (459)
+.++++|++|++++|.+
T Consensus 96 ~~~l~~L~~L~L~~N~l 112 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQL 112 (208)
T ss_dssp TTTCTTCCEEECCSSCC
T ss_pred hcCccCCCEEEcCCCcC
Confidence 44555555555555544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=139.01 Aligned_cols=182 Identities=19% Similarity=0.141 Sum_probs=124.4
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcC
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 278 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~ 278 (459)
+++.|.+.++ .+..+|..+ +++|++|++++|.+..+| ..+++|++|++++| .++.+|. ++. +|++|+++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 6777888888 777776544 377888888888877777 34678888888888 8888887 665 88888888
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
+|.++.+|. .+++|++|++++|.+.. .+. .+++|+.|+++.+....+..
T Consensus 129 ~N~l~~lp~---------------~l~~L~~L~Ls~N~l~~-------------lp~---~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 129 NNQLTMLPE---------------LPALLEYINADNNQLTM-------------LPE---LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp SSCCSCCCC---------------CCTTCCEEECCSSCCSC-------------CCC---CCTTCCEEECCSSCCSCCCC
T ss_pred CCcCCCCCC---------------cCccccEEeCCCCccCc-------------CCC---cCCCcCEEECCCCCCCCcch
Confidence 888776652 46778888888887632 222 46778888876554433322
Q ss_pred hhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccCcc
Q 012641 359 LKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 359 l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~ 434 (459)
. ..+|+.|+++.+.++.++. +.. .+ ....+.|+.|+|++|.++.+|. +..+++|++|+|++++-
T Consensus 178 ---l---~~~L~~L~Ls~N~L~~lp~--~~~---~L-~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 178 ---L---PESLEALDVSTNLLESLPA--VPV---RN-HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ---C---CTTCCEEECCSSCCSSCCC--CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ---h---hCCCCEEECcCCCCCchhh--HHH---hh-hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 1 1567777777776665532 110 00 0112334999999998889986 77899999999998553
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=133.15 Aligned_cols=209 Identities=12% Similarity=0.047 Sum_probs=135.0
Q ss_pred EEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc-ccccc-cccCCCCCCE-EEcC
Q 012641 202 RVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL-SKLHV-GEGELIDLQY-LNLS 278 (459)
Q Consensus 202 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i-~~lP~-~i~~L~~L~~-L~l~ 278 (459)
.+.-.++ .++++|..+ .++++.|++++|.+..+|+..|.++++|++|+|++| .+ +.+|. .+..+.+|++ +.++
T Consensus 13 ~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhccc
Confidence 4555666 788887555 368999999999999999888999999999999999 76 45664 5688888876 5566
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
+|++..+|. +++.++++|++|++++|.+... .........++..|++. +...+..
T Consensus 89 ~N~l~~l~~-----------~~f~~l~~L~~L~l~~n~l~~~------------~~~~~~~~~~l~~l~l~--~~~~i~~ 143 (350)
T 4ay9_X 89 ANNLLYINP-----------EAFQNLPNLQYLLISNTGIKHL------------PDVHKIHSLQKVLLDIQ--DNINIHT 143 (350)
T ss_dssp ETTCCEECT-----------TSBCCCTTCCEEEEEEECCSSC------------CCCTTCCBSSCEEEEEE--SCTTCCE
T ss_pred CCcccccCc-----------hhhhhccccccccccccccccC------------Cchhhcccchhhhhhhc--ccccccc
Confidence 788887754 2389999999999999987431 11122223334444443 2222222
Q ss_pred hhcc--hhHHhhhhhhhccCCCCCCccc----------cCccc--cCCccCc---ccccCccEEEEecCCCCCCcccccC
Q 012641 359 LKSS--SKLQSCVRRQVMGLPELSSLID----------ISSSS--LTTMMKG---HFSQNLQDLSIINCSIKDLTCILYI 421 (459)
Q Consensus 359 l~~~--~~l~~~L~~L~l~~~~l~~l~~----------~~l~~--~~~~i~~---~~l~~L~~L~L~~~~l~~lp~l~~l 421 (459)
++.. ..+...++.|.++.+.++.+.. +.+.. .-..++. ..+++|+.|++++|.++.+|. +.+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhh
Confidence 1111 1111224445555554444322 11111 1112222 347889999999998888875 337
Q ss_pred CCcceeecccCcchhhhcc
Q 012641 422 PRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 422 ~~L~~L~l~~c~~l~~i~~ 440 (459)
.+|+.|.+.++.+++.+|.
T Consensus 223 ~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp TTCCEEECTTCTTCCCCCC
T ss_pred ccchHhhhccCCCcCcCCC
Confidence 7888888888888888886
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=132.41 Aligned_cols=210 Identities=10% Similarity=0.042 Sum_probs=142.3
Q ss_pred ccceEEEeecCCCccccC----CCCCCCCcceeeeeecccccccchhHH--hcCCCccEEEccCCCCcccc-c----ccc
Q 012641 198 NEAVRVSLWRSPSIDSLS----PTPPCCPRLLTLLVRYTMIKEFENKFF--QSMHALRVLDSSQNAKLSKL-H----VGE 266 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~~i~~l-P----~~i 266 (459)
..++++.+... .+.... .....+++|+.|++++|.+....+..+ ..+++|++|++++| .+... | ..+
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHh
Confidence 34677777665 443210 112234669999999998765444335 88999999999999 77752 2 345
Q ss_pred cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccc--hhhhhccccCc
Q 012641 267 GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL--LEELESLKHLQ 344 (459)
Q Consensus 267 ~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~L~ 344 (459)
..+++|++|++++|.+..+|. .. ++++++|++|++++|.+.. .... ...++.+++|+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~----------~~-~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~~~~~l~~L~ 200 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSC----------EQ-VRAFPALTSLDLSDNPGLG----------ERGLMAALCPHKFPAIQ 200 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCT----------TS-CCCCTTCCEEECCSCTTCH----------HHHHHTTSCTTSSCCCC
T ss_pred hhccCCCEEEeeCCCcchhhH----------HH-hccCCCCCEEECCCCCCcc----------chhhhHHHhhhcCCCCC
Confidence 679999999999999877653 23 8899999999999997521 1111 12236789999
Q ss_pred eeEEEEeChhhhhhhhcc-hhHHhhhhhhhccCCCCCCccccCccccCCccCc-ccccCccEEEEecCCCCCCcc-cccC
Q 012641 345 EISVIILTLDSLNKLKSS-SKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKG-HFSQNLQDLSIINCSIKDLTC-ILYI 421 (459)
Q Consensus 345 ~L~l~~~~~~~~~~l~~~-~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~-~~l~~L~~L~L~~~~l~~lp~-l~~l 421 (459)
.|+++.+....+...... ......|+.|+++.+.+..+. |..+.. ..+++|++|++++|.++.+|. + .
T Consensus 201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~ 271 (310)
T 4glp_A 201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV-------NPSAPRCMWSSALNSLNLSFAGLEQVPKGL--P 271 (310)
T ss_dssp SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC-------CSCCSSCCCCTTCCCEECCSSCCCSCCSCC--C
T ss_pred EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc-------hhhHHhccCcCcCCEEECCCCCCCchhhhh--c
Confidence 999987655444333221 123346778888777765441 111111 224799999999998888886 4 4
Q ss_pred CCcceeecccCcchhhhcc
Q 012641 422 PRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 422 ~~L~~L~l~~c~~l~~i~~ 440 (459)
++|++|++++ ++++.++.
T Consensus 272 ~~L~~L~Ls~-N~l~~~~~ 289 (310)
T 4glp_A 272 AKLRVLDLSS-NRLNRAPQ 289 (310)
T ss_dssp SCCSCEECCS-CCCCSCCC
T ss_pred CCCCEEECCC-CcCCCCch
Confidence 8999999998 56776654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-13 Score=120.67 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=121.3
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+...+..+..+|.... ..++.|.+.+| .+..+++ .+..+++|+.|++++|.+..+++..|..+++|++|+|++| .
T Consensus 15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP-ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC-TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred EEEcCCCCcCcCCCccC-cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence 34556666777765332 68999999999 9998864 6788999999999999999887777999999999999999 9
Q ss_pred ccccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
++.+|.. +..+++|++|++++|.+..++. .. +.++++|++|++++|.+. ......+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~----------~~-~~~l~~L~~L~L~~N~l~------------~~~~~~~ 148 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV----------DA-FQDLHNLNLLSLYDNKLQ------------TIAKGTF 148 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TT-TTTCTTCCEEECCSSCCS------------CCCTTTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH----------HH-cCCCCCCCEEECCCCcCC------------EECHHHH
Confidence 9999876 5889999999999999988743 23 899999999999999873 3344567
Q ss_pred hccccCceeEEEEe
Q 012641 338 ESLKHLQEISVIIL 351 (459)
Q Consensus 338 ~~L~~L~~L~l~~~ 351 (459)
..+++|+.|++..+
T Consensus 149 ~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 149 SPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSS
T ss_pred hCCCCCCEEEeCCC
Confidence 88999999998654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=120.28 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=115.2
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+.+.+..+..+|... ..+++.|.+.+| .+..++ ..+..+++|++|++++|.+..+|...|..+++|++|+|++| .+
T Consensus 24 v~c~~~~l~~ip~~~-~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI-PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp EECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred eEccCCCcCccCCCC-CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cC
Confidence 444555666666533 278999999999 888774 55778999999999999999998887899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
+.+|.. ++.+.+|++|++++|.+..+|.+ +.++++|++|++++|.+. ......+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~------------~~~l~~L~~L~L~~N~l~------------~~~~~~~~ 156 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRG------------IERLTHLTHLALDQNQLK------------SIPHGAFD 156 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTT------------GGGCTTCSEEECCSSCCC------------CCCTTTTT
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcc------------cccCCCCCEEECCCCcCC------------ccCHHHHh
Confidence 888755 58899999999999998877653 778899999999999873 23335677
Q ss_pred ccccCceeEEEEe
Q 012641 339 SLKHLQEISVIIL 351 (459)
Q Consensus 339 ~L~~L~~L~l~~~ 351 (459)
.+++|+.|++..+
T Consensus 157 ~l~~L~~L~l~~N 169 (229)
T 3e6j_A 157 RLSSLTHAYLFGN 169 (229)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEEeeCC
Confidence 8889998888643
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-12 Score=117.35 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=101.1
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~ 279 (459)
..+...++ .+..+|..+. ++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. ++.+++|++|++++
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 45777777 7888865444 89999999999999887777999999999999999 99999754 58999999999999
Q ss_pred CCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEE
Q 012641 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 280 ~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
|.++.+|.. .+..+++|++|++++|.+. ..+..+..+++|+.|+++.
T Consensus 98 N~l~~l~~~-----------~~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 98 NQLTVLPSA-----------VFDRLVHLKELFMCCNKLT-------------ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp SCCCCCCTT-----------TTTTCTTCCEEECCSSCCC-------------SCCTTGGGCTTCSEEECCS
T ss_pred CcCCccChh-----------HhCcchhhCeEeccCCccc-------------ccCcccccCCCCCEEECCC
Confidence 999887643 2789999999999999863 3566778888888888753
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-13 Score=123.32 Aligned_cols=170 Identities=16% Similarity=0.112 Sum_probs=124.8
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
.++.++.+..+ .+.++ +.+..+++|++|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++
T Consensus 19 ~~l~~l~l~~~-~i~~~-~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQ-SVTDL-VSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCS-CTTSE-ECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCC-Ccccc-cchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 34555556666 67766 466778899999999998888873 889999999999999 8998887 899999999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhh
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLN 357 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 357 (459)
++|.++.+|. +.. .+|++|++++|.+.. +..++.+++|+.|+++.+....+.
T Consensus 93 ~~N~l~~l~~-------------~~~-~~L~~L~L~~N~l~~--------------~~~l~~l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 93 NRNRLKNLNG-------------IPS-ACLSRLFLDNNELRD--------------TDSLIHLKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp CSSCCSCCTT-------------CCC-SSCCEEECCSSCCSB--------------SGGGTTCTTCCEEECTTSCCCBCG
T ss_pred CCCccCCcCc-------------ccc-CcccEEEccCCccCC--------------ChhhcCcccccEEECCCCcCCCCh
Confidence 9999888764 444 899999999988632 246888999999998655444332
Q ss_pred hhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCc
Q 012641 358 KLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLT 416 (459)
Q Consensus 358 ~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp 416 (459)
. ......|+.|+++.+.+..+. . ...+++|+.|++++|.+...|
T Consensus 145 ~----l~~l~~L~~L~L~~N~i~~~~---------~--l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 145 M----LGFLSKLEVLDLHGNEITNTG---------G--LTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp G----GGGCTTCCEEECTTSCCCBCT---------T--STTCCCCCEEEEEEEEEECCC
T ss_pred H----HccCCCCCEEECCCCcCcchH---------H--hccCCCCCEEeCCCCcccCCc
Confidence 2 122345677777666655441 1 134788999999998655544
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=117.75 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=116.7
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC--CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP--TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
+...+..+..+|... ...++.|.+.+| .+..+++ .+..+++|++|++++|.+..+++..|..+++|++|+|++| .
T Consensus 16 l~~s~n~l~~iP~~~-~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~ 92 (220)
T 2v70_A 16 VDCSNQKLNKIPEHI-PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-R 92 (220)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred eEeCCCCcccCccCC-CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-c
Confidence 444555666666422 356789999999 8888743 3678999999999999999888877999999999999999 8
Q ss_pred cccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
+..+|. .++.+++|++|++++|.+..++. .. +.++++|++|++++|.+ ....+..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~-~~~l~~L~~L~L~~N~l------------~~~~~~~~ 149 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGN----------DS-FIGLSSVRLLSLYDNQI------------TTVAPGAF 149 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCT----------TS-STTCTTCSEEECTTSCC------------CCBCTTTT
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECH----------hH-cCCCccCCEEECCCCcC------------CEECHHHh
Confidence 888865 48899999999999999887742 23 88999999999999987 44456788
Q ss_pred hccccCceeEEEEe
Q 012641 338 ESLKHLQEISVIIL 351 (459)
Q Consensus 338 ~~L~~L~~L~l~~~ 351 (459)
..+++|+.|++..+
T Consensus 150 ~~l~~L~~L~L~~N 163 (220)
T 2v70_A 150 DTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCCEEECCSC
T ss_pred cCCCCCCEEEecCc
Confidence 88999999998654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-14 Score=139.18 Aligned_cols=215 Identities=15% Similarity=0.108 Sum_probs=115.4
Q ss_pred ccceEEEeecCCCcccc-----CCCCCCCCcceeeeeeccccc----ccchhH------HhcCCCccEEEccCCCCccc-
Q 012641 198 NEAVRVSLWRSPSIDSL-----SPTPPCCPRLLTLLVRYTMIK----EFENKF------FQSMHALRVLDSSQNAKLSK- 261 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~----~~~~~~------~~~l~~Lr~L~L~~~~~i~~- 261 (459)
+.++.|.+.++ .+... +..+..+++|++|++++|.+. .+|..+ +..+++|++|+|++| .+..
T Consensus 32 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPT 109 (386)
T ss_dssp SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTT
T ss_pred CCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHH
Confidence 56777888777 65542 234567788888888776433 233332 367788888888888 6665
Q ss_pred ----ccccccCCCCCCEEEcCCCCCcccC-HHHHHhhhhCCCCcCCCC---------CCCCEeeecCCCCCCcCCCCCCC
Q 012641 262 ----LHVGEGELIDLQYLNLSNTNICELP-IGIKKNLKAIPAGMLSSL---------LSLRVFSWVPTRYAGFNYGSSVP 327 (459)
Q Consensus 262 ----lP~~i~~L~~L~~L~l~~~~l~~lp-~~i~~Ll~~lp~~~i~~L---------~~L~~L~l~~~~~~~~~~~~~~~ 327 (459)
+|..+..+++|++|++++|.+...+ ..+... +..+ ++|++|++++|.+..
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--------l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------- 173 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--------LQELAVNKKAKNAPPLRSIICGRNRLEN-------- 173 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--------HHHHHHHHHHHTCCCCCEEECCSSCCTG--------
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--------HHHHhhhhhcccCCCCcEEECCCCCCCc--------
Confidence 6777777888888888888775321 122211 1112 556666666655420
Q ss_pred Cccccch---hhhhccccCceeEEEEeChh--hhhhhhc-chhHHhhhhhhhccCCCC---------------CCccccC
Q 012641 328 GVTVLLL---EELESLKHLQEISVIILTLD--SLNKLKS-SSKLQSCVRRQVMGLPEL---------------SSLIDIS 386 (459)
Q Consensus 328 ~~~~~~~---~~l~~L~~L~~L~l~~~~~~--~~~~l~~-~~~l~~~L~~L~l~~~~l---------------~~l~~~~ 386 (459)
...+ ..+..+++|+.|++..+... .+..+.. .......|+.|+++.+.+ ++|..++
T Consensus 174 ---~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 174 ---GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp ---GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred ---HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 1111 34444555555555433222 1111111 111122344444433322 1222222
Q ss_pred cccc----------CCccCcccccCccEEEEecCCCCC-----Ccc-c-ccCCCcceeecccCc
Q 012641 387 SSSL----------TTMMKGHFSQNLQDLSIINCSIKD-----LTC-I-LYIPRLRFLFAKDCP 433 (459)
Q Consensus 387 l~~~----------~~~i~~~~l~~L~~L~L~~~~l~~-----lp~-l-~~l~~L~~L~l~~c~ 433 (459)
+... +.++....+++|++|+|++|.+.. +|. + ..+++|++|++++|+
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2221 111111237888999998887766 664 4 568889999988753
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=115.75 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=98.5
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeeccccccc-chhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEF-ENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLS 278 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~ 278 (459)
+.+.+.++ .++.+|..+. +.++.|++++|.+..+ +..+|..+++|++|++++| .++.+|. .++.+.+|++|+++
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 46888888 8888865443 4568999999988877 4455889999999999999 8988865 78999999999999
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
+|.+..+|.. .+.++++|++|++++|.+ ....+..+..+++|+.|+++
T Consensus 90 ~N~l~~~~~~-----------~~~~l~~L~~L~Ls~N~l------------~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 90 SNRLENVQHK-----------MFKGLESLKTLMLRSNRI------------TCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp SSCCCCCCGG-----------GGTTCSSCCEEECTTSCC------------CCBCTTSSTTCTTCSEEECT
T ss_pred CCccCccCHh-----------HhcCCcCCCEEECCCCcC------------CeECHhHcCCCccCCEEECC
Confidence 9999887653 278899999999999987 33445677788888888774
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=115.20 Aligned_cols=145 Identities=21% Similarity=0.194 Sum_probs=117.7
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+.+...+|... .++++.|.+.++ .+..+++. +..+++|++|++++|.+..+++..|..+++|++|++++| .+
T Consensus 12 v~c~~~~l~~~p~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI-PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QL 88 (208)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCccCCCCCC-CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cC
Confidence 444555555555332 368999999999 88888643 678999999999999999999887899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
+.+|.. ++.+++|++|++++|.+..+|.. .+.++++|++|++++|.+. ......+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~l~~N~l~------------~~~~~~~~ 145 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDG-----------VFDKLTQLKDLRLYQNQLK------------SVPDGVFD 145 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCCS------------CCCTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHh-----------HhccCCcCCEEECCCCccc------------eeCHHHhc
Confidence 998765 68999999999999999877642 2789999999999999873 23334577
Q ss_pred ccccCceeEEEEe
Q 012641 339 SLKHLQEISVIIL 351 (459)
Q Consensus 339 ~L~~L~~L~l~~~ 351 (459)
.+++|+.|++..+
T Consensus 146 ~l~~L~~L~l~~N 158 (208)
T 2o6s_A 146 RLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSC
T ss_pred cCCCccEEEecCC
Confidence 8899999988643
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=114.17 Aligned_cols=125 Identities=11% Similarity=0.146 Sum_probs=78.8
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-ccccccCCCCCCEE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LHVGEGELIDLQYL 275 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP~~i~~L~~L~~L 275 (459)
++.++.+.+.++ .+..++ .+..+++|++|++++|.+..++. +..+++|++|++++| .+.. .|..++.+++|++|
T Consensus 43 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 456677777777 666663 56667777777777775555542 667777777777777 6654 46667777777777
Q ss_pred EcCCCCCcc-cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC-CCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 276 NLSNTNICE-LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR-YAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 276 ~l~~~~l~~-lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
++++|.+.. .|.. ++++++|++|++++|. .. .+..+..+++|+.|+++.+.
T Consensus 118 ~Ls~n~i~~~~~~~------------l~~l~~L~~L~L~~n~~i~--------------~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 118 DISHSAHDDSILTK------------INTLPKVNSIDLSYNGAIT--------------DIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp ECCSSBCBGGGHHH------------HTTCSSCCEEECCSCTBCC--------------CCGGGGGCSSCCEEECTTBC
T ss_pred EecCCccCcHhHHH------------HhhCCCCCEEEccCCCCcc--------------ccHhhcCCCCCCEEECCCCC
Confidence 777776664 2222 5566677777776665 31 11246666666666665433
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.6e-14 Score=134.33 Aligned_cols=199 Identities=14% Similarity=0.135 Sum_probs=137.8
Q ss_pred ceEEEeecCCCccccCCCCCCC--CcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc--ccccccCCCCCCEE
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCC--PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK--LHVGEGELIDLQYL 275 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~--lP~~i~~L~~L~~L 275 (459)
.+++.+.++ .+.. ..+..+ ++++.|.+.+|.+...++. +..+++|++|++++| .+.. +|..++.+++|++|
T Consensus 49 ~~~l~l~~~-~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGK-NLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTC-BCCH--HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccc-cCCH--HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEE
Confidence 556666665 4431 223344 7899999999988777766 668999999999999 7764 78889999999999
Q ss_pred EcCCCCCc-ccCHHHHHhhhhCCCCcCCCCCCCCEeeecCC-CCCCcCCCCCCCCccccchhhhhccccCceeEEEEe-C
Q 012641 276 NLSNTNIC-ELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPT-RYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL-T 352 (459)
Q Consensus 276 ~l~~~~l~-~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~ 352 (459)
++++|.+. ..|.. ++++++|++|++++| .+. ....+..+.++++|+.|++..+ .
T Consensus 124 ~L~~~~l~~~~~~~------------l~~~~~L~~L~L~~~~~l~-----------~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 124 SLEGLRLSDPIVNT------------LAKNSNLVRLNLSGCSGFS-----------EFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp ECTTCBCCHHHHHH------------HTTCTTCSEEECTTCBSCC-----------HHHHHHHHHHCTTCCEEECCCCTT
T ss_pred eCcCcccCHHHHHH------------HhcCCCCCEEECCCCCCCC-----------HHHHHHHHhcCCCCCEEcCCCCCC
Confidence 99999876 33332 778999999999999 441 2235566889999999999765 3
Q ss_pred hhhhhhhhcchhHHh-hhhhhhccCCC--CCCccccCccccCCccCcccccCccEEEEecCC-CCC--CcccccCCCcce
Q 012641 353 LDSLNKLKSSSKLQS-CVRRQVMGLPE--LSSLIDISSSSLTTMMKGHFSQNLQDLSIINCS-IKD--LTCILYIPRLRF 426 (459)
Q Consensus 353 ~~~~~~l~~~~~l~~-~L~~L~l~~~~--l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~-l~~--lp~l~~l~~L~~ 426 (459)
.... .+........ +|+.|+++.+. +..- ..+.. ...+++|++|++++|. ++. ++.++.+++|++
T Consensus 181 l~~~-~~~~~~~~l~~~L~~L~l~~~~~~~~~~------~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 181 FTEK-HVQVAVAHVSETITQLNLSGYRKNLQKS------DLSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp CCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHH------HHHHH--HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred cChH-HHHHHHHhcccCCCEEEeCCCcccCCHH------HHHHH--HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 3321 1222222223 56666664432 2100 00111 1348899999999995 543 456889999999
Q ss_pred eecccCcch
Q 012641 427 LFAKDCPSL 435 (459)
Q Consensus 427 L~l~~c~~l 435 (459)
|++++|..+
T Consensus 252 L~l~~~~~~ 260 (336)
T 2ast_B 252 LSLSRCYDI 260 (336)
T ss_dssp EECTTCTTC
T ss_pred eeCCCCCCC
Confidence 999998744
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=113.48 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=101.8
Q ss_pred ccceEEEeecCCCcc--ccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-ccccccCCCCCCE
Q 012641 198 NEAVRVSLWRSPSID--SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LHVGEGELIDLQY 274 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP~~i~~L~~L~~ 274 (459)
++++.|.+.++ .+. .+|..+..+++|++|++++|.+..+ . .+..+++|++|++++| .+.. +|..++.+++|++
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-NLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-SCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-hhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 57889999998 777 7766678889999999999988777 3 3888999999999999 8887 6777777999999
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccch---hhhhccccCceeEEEEe
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL---EELESLKHLQEISVIIL 351 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~l~~~ 351 (459)
|++++|.++.+|. + .. +.++++|++|++++|.+.. ... ..+..+++|+.|++..+
T Consensus 100 L~Ls~N~l~~~~~--------~-~~-l~~l~~L~~L~l~~N~l~~------------~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNKLKDIST--------L-EP-LKKLECLKSLDLFNCEVTN------------LNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSSCCSSGG--------G-GG-GSSCSCCCEEECCSSGGGT------------STTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCccCcchh--------H-HH-HhcCCCCCEEEeeCCcCcc------------hHHHHHHHHHhCccCcEecCCCC
Confidence 9999998887752 0 12 7888999999999887632 222 46788888998888754
Q ss_pred C
Q 012641 352 T 352 (459)
Q Consensus 352 ~ 352 (459)
.
T Consensus 158 ~ 158 (168)
T 2ell_A 158 E 158 (168)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=111.13 Aligned_cols=125 Identities=20% Similarity=0.161 Sum_probs=103.9
Q ss_pred ccceEEEeecCCCcc--ccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-ccccccCCCCCCE
Q 012641 198 NEAVRVSLWRSPSID--SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LHVGEGELIDLQY 274 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP~~i~~L~~L~~ 274 (459)
++++.+.+.++ .+. .+|..+..+++|++|++++|.+..+ . .++.+++|++|++++| .+.. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI-A-NLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-T-TCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc-h-hhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 67999999999 887 7877778999999999999988877 3 3899999999999999 8887 7888888999999
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccch---hhhhccccCceeEE
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL---EELESLKHLQEISV 348 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~l 348 (459)
|++++|.++.+|. |.. ++++++|++|++++|.+. .... ..++.+++|+.|++
T Consensus 93 L~ls~N~i~~~~~---------~~~-~~~l~~L~~L~l~~N~l~------------~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLST---------IEP-LKKLENLKSLDLFNCEVT------------NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHH---------HGG-GGGCTTCCEEECTTCGGG------------GSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHH---------HHH-HhhCCCCCEEeCcCCccc------------chHHHHHHHHHHCCCcccccC
Confidence 9999999987652 112 788999999999999863 2222 46888899998865
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-12 Score=127.57 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=122.6
Q ss_pred ccccCCCCCCCCcceeeeeecccccccchhH----HhcCCCccEEEccCCCCcc----cccccc-------cCCCCCCEE
Q 012641 211 IDSLSPTPPCCPRLLTLLVRYTMIKEFENKF----FQSMHALRVLDSSQNAKLS----KLHVGE-------GELIDLQYL 275 (459)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~Lr~L~L~~~~~i~----~lP~~i-------~~L~~L~~L 275 (459)
+..++..+..+++|++|++++|.+....... +..+++|++|+|++| .+. .+|..+ ..+++|++|
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3334344566789999999999776543322 668999999999997 554 335444 789999999
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccc----hhhhhcc---------cc
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL----LEELESL---------KH 342 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----~~~l~~L---------~~ 342 (459)
++++|.+..-- ...+|.. +.++++|++|++++|.+ .... ...+..+ ++
T Consensus 100 ~Ls~n~l~~~~------~~~l~~~-l~~~~~L~~L~L~~n~l------------~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 100 RLSDNAFGPTA------QEPLIDF-LSKHTPLEHLYLHNNGL------------GPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp ECCSCCCCTTT------HHHHHHH-HHHCTTCCEEECCSSCC------------HHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ECCCCcCCHHH------HHHHHHH-HHhCCCCCEEECcCCCC------------CHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 99999887510 0112222 66789999999999987 3222 3334445 89
Q ss_pred CceeEEEEeChh--hhhhhhcchhHHhhhhhhhccCCCCC----------------CccccCccccC------CccCc--
Q 012641 343 LQEISVIILTLD--SLNKLKSSSKLQSCVRRQVMGLPELS----------------SLIDISSSSLT------TMMKG-- 396 (459)
Q Consensus 343 L~~L~l~~~~~~--~~~~l~~~~~l~~~L~~L~l~~~~l~----------------~l~~~~l~~~~------~~i~~-- 396 (459)
|+.|+++.+... .+..+.........|+.|.++.+.+. .|..+++.... ..++.
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 999999765543 33333333333446777777555543 22222222210 00111
Q ss_pred ccccCccEEEEecCCCCCC-----c-cc--ccCCCcceeecccC
Q 012641 397 HFSQNLQDLSIINCSIKDL-----T-CI--LYIPRLRFLFAKDC 432 (459)
Q Consensus 397 ~~l~~L~~L~L~~~~l~~l-----p-~l--~~l~~L~~L~l~~c 432 (459)
..+++|++|+|++|.+... + .+ +.+++|++|+|++|
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 2356677777777655443 2 23 33667777777764
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=9.4e-12 Score=110.05 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=92.1
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchh-HHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENK-FFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLS 278 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~ 278 (459)
+.+.+.++ .++.+|..+.. +|++|++++|.+..+++. ++..+++|++|+|++| .++.+ |..++.+.+|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 45677777 77777654433 788888888887777753 4778888888888888 77777 6778888888888888
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
+|.++.+|. .. +.++++|++|++++|.+ ....+..+..+++|+.|++..+
T Consensus 87 ~N~l~~~~~----------~~-~~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENKIKEISN----------KM-FLGLHQLKTLNLYDNQI------------SCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCCCCEECS----------SS-STTCTTCCEEECCSSCC------------CEECTTSSTTCTTCCEEECTTC
T ss_pred CCcCCccCH----------HH-hcCCCCCCEEECCCCcC------------CeeCHHHhhcCCCCCEEEeCCC
Confidence 888876643 22 77888888888888876 4445667777888888877543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-12 Score=109.43 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=106.9
Q ss_pred cccccceEEEeecCCCccccCCCCCCCC-cceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccc-cCCCCC
Q 012641 195 ASWNEAVRVSLWRSPSIDSLSPTPPCCP-RLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDL 272 (459)
Q Consensus 195 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i-~~L~~L 272 (459)
....+++.+.+.++ .+..+ +.+..+. +|++|++++|.+..++ . +..+++|++|++++| .+..+|..+ +.+++|
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVI-ENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSC-CCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCC-CCchh-HHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 34468999999999 88888 4555554 9999999999888873 3 899999999999999 999998766 899999
Q ss_pred CEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchh----hhhccccCceeEE
Q 012641 273 QYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE----ELESLKHLQEISV 348 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~L~~L~l 348 (459)
++|++++|.+..+|. +. . +.++++|++|++++|.+.. .+. .+..+++|+.|++
T Consensus 91 ~~L~L~~N~i~~~~~--------~~-~-l~~l~~L~~L~l~~N~i~~-------------~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 91 TELILTNNSLVELGD--------LD-P-LASLKSLTYLCILRNPVTN-------------KKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CEEECCSCCCCCGGG--------GG-G-GGGCTTCCEEECCSSGGGG-------------STTHHHHHHHHCTTCSEETT
T ss_pred CEEECCCCcCCcchh--------hH-h-hhcCCCCCEEEecCCCCCC-------------cHhHHHHHHHHCCccceeCC
Confidence 999999999988775 00 1 7789999999999998632 233 4888999999998
Q ss_pred EEeChh
Q 012641 349 IILTLD 354 (459)
Q Consensus 349 ~~~~~~ 354 (459)
..+...
T Consensus 148 ~~n~~~ 153 (176)
T 1a9n_A 148 QKVKLK 153 (176)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 765443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=120.10 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=110.7
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCC-CC-CCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPT-PP-CCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+...+..+..+|... ...++.|.+.+| .+..+++. +. .+++|++|++++|.+..+++..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL-PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN- 98 (361)
T ss_dssp EEECCSSCCSSCCSSC-CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EEEeCCCCcCccCccC-CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-
Confidence 4555666677776532 356889999999 88888644 44 8999999999999999888877999999999999999
Q ss_pred Ccccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh
Q 012641 258 KLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE 336 (459)
Q Consensus 258 ~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.+..+|. .+..+.+|++|+|++|.+..++. .. +.++++|++|++++|.+..+ .......
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----------~~-~~~l~~L~~L~L~~N~l~~l---------~~~~~~~ 158 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDR----------NA-FEDMAQLQKLYLSQNQISRF---------PVELIKD 158 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECT----------TT-TTTCTTCCEEECCSSCCCSC---------CGGGTC-
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECH----------HH-hCCcccCCEEECCCCcCCee---------CHHHhcC
Confidence 8988865 57899999999999999887642 22 77888888888888876321 0111112
Q ss_pred hhccccCceeEEEEeCh
Q 012641 337 LESLKHLQEISVIILTL 353 (459)
Q Consensus 337 l~~L~~L~~L~l~~~~~ 353 (459)
+..+++|+.|+++.+..
T Consensus 159 ~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 159 GNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp ---CTTCCEEECCSSCC
T ss_pred cccCCcCCEEECCCCCC
Confidence 25677888887765443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.3e-12 Score=128.81 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=122.3
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcC
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGML 301 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i 301 (459)
.+|+.|++++|.+..+|..+ +++|++|++++| .++.+| +.+++|++|++++|.++.+|. +
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-------------l 118 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-------------L 118 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-------------C
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-------------h
Confidence 37899999999998898863 389999999999 999999 568999999999999988764 4
Q ss_pred CCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCC
Q 012641 302 SSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSS 381 (459)
Q Consensus 302 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~ 381 (459)
.+ +|++|++++|.+.. .+. .+++|+.|+++.+.... ++. ...+|+.|+++.+.+..
T Consensus 119 ~~--~L~~L~Ls~N~l~~-------------lp~---~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTM-------------LPE---LPALLEYINADNNQLTM---LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CT--TCCEEECCSSCCSC-------------CCC---CCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSCCSC
T ss_pred hc--CCCEEECCCCcCCC-------------CCC---cCccccEEeCCCCccCc---CCC---cCCCcCEEECCCCCCCC
Confidence 44 99999999998732 333 58899999997654443 332 23467778887777655
Q ss_pred ccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCc-------ceeecccCcchhhhcc
Q 012641 382 LIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRL-------RFLFAKDCPSLEEIIA 440 (459)
Q Consensus 382 l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L-------~~L~l~~c~~l~~i~~ 440 (459)
++ . + .++|+.|+|++|.++.+|.+.. +| ++|++++ ++++.||.
T Consensus 175 lp--------~-l----~~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~ 224 (571)
T 3cvr_A 175 LP--------E-L----PESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRE-NRITHIPE 224 (571)
T ss_dssp CC--------C-C----CTTCCEEECCSSCCSSCCCCC----------CCEEEECCS-SCCCCCCG
T ss_pred cc--------h-h----hCCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCC-CcceecCH
Confidence 42 2 1 2799999999998889887433 77 9999998 67887776
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=104.64 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=73.9
Q ss_pred CCccEEEccCCCCcc--cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCC
Q 012641 246 HALRVLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYG 323 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~--~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 323 (459)
++|+.|++++| .+. .+|..++.+++|++|++++|.+..++ . ++++++|++|++++|.+
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------~-~~~l~~L~~L~Ls~n~i------ 76 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSIA------------N-LPKLNKLKKLELSDNRV------ 76 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCCT------------T-CCCCTTCCEEECCSSCC------
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCch------------h-hhcCCCCCEEECCCCcc------
Confidence 45666666666 665 56666666666777777666665542 1 66666777777766665
Q ss_pred CCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCcc
Q 012641 324 SSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQ 403 (459)
Q Consensus 324 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~ 403 (459)
....+..++.+++|+.|+++.+....+... . . ...+++|+
T Consensus 77 ------~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~-------~-------------------------~--~~~l~~L~ 116 (149)
T 2je0_A 77 ------SGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-------E-------------------------P--LKKLENLK 116 (149)
T ss_dssp ------CSCTHHHHHHCTTCCEEECTTSCCCSHHHH-------G-------------------------G--GGGCTTCC
T ss_pred ------cchHHHHhhhCCCCCEEECCCCcCCChHHH-------H-------------------------H--HhhCCCCC
Confidence 222444555566666666642211111000 0 0 02267788
Q ss_pred EEEEecCCCCCCcc-----cccCCCcceeecc
Q 012641 404 DLSIINCSIKDLTC-----ILYIPRLRFLFAK 430 (459)
Q Consensus 404 ~L~L~~~~l~~lp~-----l~~l~~L~~L~l~ 430 (459)
+|++++|.+..+|. ++.+++|++|+++
T Consensus 117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888886666654 6778888888775
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=107.54 Aligned_cols=122 Identities=19% Similarity=0.219 Sum_probs=91.0
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~ 279 (459)
+.+.+.++ .+..+|..+. ++|++|++++|.+..+|.. |..+++|++|+|++| .++.+| ..+..+.+|++|++++
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 34666666 7777764443 5788888888888888854 888888888888888 888775 4578888888888888
Q ss_pred CCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEE
Q 012641 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 280 ~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
|.+..+|.. . +.++++|++|++++|.+. ......+..+++|+.|++..
T Consensus 88 N~l~~i~~~----------~-f~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 88 NRLRCIPPR----------T-FDGLKSLRLLSLHGNDIS------------VVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp SCCCBCCTT----------T-TTTCTTCCEEECCSSCCC------------BCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHH----------H-hCCCCCCCEEECCCCCCC------------eeChhhhhcCccccEEEeCC
Confidence 888776532 2 788888888888888762 22334567788888888764
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=107.91 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=107.2
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
.+...+..+..+|... ...++.|.+.+| .+..+|..+..+++|++|++++|.+..+++..|..+++|++|+|++| .+
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI-PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEcCCCCCCcCCCCC-CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence 3455666677776532 368999999999 99999888889999999999999999999888999999999999999 99
Q ss_pred cccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 260 SKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 260 ~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+.+| ..++.+++|++|++++|.+..+|.+ ++..+++|+.|++.+|..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEG-----------AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTT-----------TTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChh-----------hhhcCccccEEEeCCCCe
Confidence 9886 4689999999999999999887653 388999999999999876
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-12 Score=135.62 Aligned_cols=112 Identities=22% Similarity=0.172 Sum_probs=84.8
Q ss_pred CCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhh
Q 012641 215 SPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLK 294 (459)
Q Consensus 215 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~ 294 (459)
+..+..+++|++|++++|.+..+|.. +..+++|++|+|++| .++.+|..++.|.+|++|+|++|.|+.+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~------- 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPA------- 287 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCS-------
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccCh-------
Confidence 35566778888888888888888877 558888888888888 888888888888888888888888876654
Q ss_pred hCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeCh
Q 012641 295 AIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTL 353 (459)
Q Consensus 295 ~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 353 (459)
. +++|++|++|++++|.+. ..+..+++|++|+.|+++.+..
T Consensus 288 ----~-~~~l~~L~~L~L~~N~l~-------------~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 288 ----E-LGSCFQLKYFYFFDNMVT-------------TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ----S-GGGGTTCSEEECCSSCCC-------------CCCSSTTSCTTCCCEECTTSCC
T ss_pred ----h-hcCCCCCCEEECCCCCCC-------------ccChhhhcCCCccEEeCCCCcc
Confidence 3 778888888888888752 3566688888888888865443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-12 Score=125.25 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=53.7
Q ss_pred cceEEEeecCCCccccC-----CCCCCCC-cceeeeeecccccccchhHHhcC-----CCccEEEccCCCCccccc-cc-
Q 012641 199 EAVRVSLWRSPSIDSLS-----PTPPCCP-RLLTLLVRYTMIKEFENKFFQSM-----HALRVLDSSQNAKLSKLH-VG- 265 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~-----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~i~~lP-~~- 265 (459)
.++.|.+.+| .+...+ ..+..++ +|++|++++|.+.......+..+ ++|++|++++| .++..+ ..
T Consensus 23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH
T ss_pred CceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHH
Confidence 4777777777 666653 2334555 67777777776665544445543 77777777777 666443 22
Q ss_pred ---ccCC-CCCCEEEcCCCCCcccC
Q 012641 266 ---EGEL-IDLQYLNLSNTNICELP 286 (459)
Q Consensus 266 ---i~~L-~~L~~L~l~~~~l~~lp 286 (459)
+..+ ++|++|++++|.+...+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHHhCCCCccEEECcCCcCCcHH
Confidence 3333 67777777777776554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=104.76 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=77.9
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~ 279 (459)
+.+.+.++ .+..+|..+ .++|++|++++|.+..+++..+..+++|++|++++| .++.+|.. ++.+++|++|++++
T Consensus 10 ~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 34555555 566664322 256777777777776776665677777777777777 77766544 46777777777777
Q ss_pred CCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 280 ~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
|.++.+|.. .+.++++|++|++++|.+. ......+..+++|+.|++..+
T Consensus 86 N~l~~~~~~-----------~~~~l~~L~~L~l~~N~l~------------~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NKLQSLPNG-----------VFDKLTQLKELALDTNQLK------------SVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SCCCCCCTT-----------TTTTCTTCCEEECCSSCCS------------CCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCHH-----------HhhCCcccCEEECcCCcce------------EeCHHHhcCCcccCEEEecCC
Confidence 776665432 2566777777777777652 222233456677777776543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=99.61 Aligned_cols=130 Identities=20% Similarity=0.119 Sum_probs=105.7
Q ss_pred eEEEecCCCcc--ccccc-cccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccC
Q 012641 179 ILVFQETDKSI--KVQET-ASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQ 255 (459)
Q Consensus 179 ~~~~~~~~~~~--~~~~~-~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~ 255 (459)
..+...+.... .+|.. ..+++++.|.+.+| .+..+ ..+..+++|++|++++|.+...++..+..+++|++|++++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 44444555555 55544 56789999999999 89888 8889999999999999988874455588899999999999
Q ss_pred CCCccccc--ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCC
Q 012641 256 NAKLSKLH--VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAG 319 (459)
Q Consensus 256 ~~~i~~lP--~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~ 319 (459)
| .++.+| ..++.+++|++|++++|.+..+|.... ..+..+++|++|++.+|....
T Consensus 105 N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~--------~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 105 N-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE--------SVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp S-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHH--------HHHTTCSSCCEETTEETTSCB
T ss_pred C-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHH--------HHHHhCccCcEecCCCCChhh
Confidence 9 999987 789999999999999999988775110 117889999999999997643
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-11 Score=104.38 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=103.8
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCC--CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPT--PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+...+..+..+|... ...++.|.+.++ .+..+++. +..+++|++|++++|.+..+++..|..+++|++|+|++|
T Consensus 12 ~l~~s~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 88 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN- 88 (192)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred EEEcCCCCcCcCccCC-CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-
Confidence 3445556666666533 248999999999 99988653 788999999999999999887766999999999999999
Q ss_pred Ccccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 258 KLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 258 ~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.++.+|. .++.+++|++|++++|.+..++ |.. +..+++|++|++++|..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~-~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVM----------PGS-FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEEC----------TTS-STTCTTCCEEECTTCCB
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeC----------HHH-hhcCCCCCEEEeCCCCc
Confidence 9998865 4899999999999999998763 334 89999999999999986
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=124.63 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=53.5
Q ss_pred ceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCC
Q 012641 224 LLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSS 303 (459)
Q Consensus 224 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~ 303 (459)
|++|++++|.+..+|. ++.+++|++|+|++| .++.+|..++.+++|++|++++|.++.+|. +++
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~-------------l~~ 506 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVDG-------------VAN 506 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCGG-------------GTT
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCcc-------------cCC
Confidence 5555555555555553 555555555555555 555555555555555555555555555441 555
Q ss_pred CCCCCEeeecCCCCCCcCCCCCCCCccccc-hhhhhccccCceeEEE
Q 012641 304 LLSLRVFSWVPTRYAGFNYGSSVPGVTVLL-LEELESLKHLQEISVI 349 (459)
Q Consensus 304 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~~L~l~ 349 (459)
|++|++|++++|.+. ... +..++.|++|+.|+++
T Consensus 507 l~~L~~L~Ls~N~l~------------~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 507 LPRLQELLLCNNRLQ------------QSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CSSCCEEECCSSCCC------------SSSTTGGGGGCTTCCEEECT
T ss_pred CCCCcEEECCCCCCC------------CCCCcHHHhcCCCCCEEEec
Confidence 555555555555542 222 4555555555555554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=101.73 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=103.1
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+.....+|.. ..+.++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 12 l~~~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l 88 (177)
T 2o6r_A 12 IRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KL 88 (177)
T ss_dssp EECCSSCCSSCCTT-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCCccCCCC-CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-Cc
Confidence 34455556666532 2368999999999 8888864 3578999999999999999999887899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+.+|.. ++.+++|++|++++|.++.+|.. .+.++++|++|++++|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----------~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDG-----------IFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTT-----------TTTTCTTCCEEECCSSCB
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHH-----------HhcCCcccCEEEecCCCe
Confidence 998765 68999999999999999887653 268899999999999986
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=103.25 Aligned_cols=128 Identities=18% Similarity=0.109 Sum_probs=106.5
Q ss_pred eEEEecCCCccccccccccc-cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 179 ILVFQETDKSIKVQETASWN-EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~-~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
..+...+.....++...... +++.|.+.+| .+..+ +.+..+++|++|++++|.+..+|+.++..+++|++|++++|
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N- 98 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN- 98 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-
Confidence 34444555555665555555 8999999999 99988 88999999999999999999999887799999999999999
Q ss_pred Ccccccc--cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 258 KLSKLHV--GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 258 ~i~~lP~--~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.+..+|. .++.+++|++|++++|.+..+|..-.. ++..+++|+.|++++|..
T Consensus 99 ~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~--------~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 99 SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY--------VIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHH--------HHHHCTTCSEETTEECCH
T ss_pred cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHH--------HHHHCCccceeCCCcCCH
Confidence 9999987 899999999999999999888764111 156788999999998865
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=101.63 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=89.8
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~ 279 (459)
+.+.+.++ .+..+|..+. ++|++|++++|.+..+++..|..+++|++|+|++| .++.+|.. ++.+++|++|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 56788888 8888876554 89999999999999998777999999999999999 99999876 48999999999999
Q ss_pred CCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 280 ~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
|.++.+|.+ .+.++++|++|++++|.+.
T Consensus 91 N~l~~l~~~-----------~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRG-----------AFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTT-----------TTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHH-----------HhccccCCCEEEeCCCCcc
Confidence 999887643 3889999999999999863
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-12 Score=130.02 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=76.2
Q ss_pred cccceEEEeecCCCccc-----cCCCCCCCCcceeeeeeccccccc-chhHHhcCC----CccEEEccCCCCcc-----c
Q 012641 197 WNEAVRVSLWRSPSIDS-----LSPTPPCCPRLLTLLVRYTMIKEF-ENKFFQSMH----ALRVLDSSQNAKLS-----K 261 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~----~Lr~L~L~~~~~i~-----~ 261 (459)
.++++.+.+.++ .+.. ++..+..+++|++|++++|.+... +..++..++ +|++|++++| .+. .
T Consensus 27 ~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred cCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHH
Confidence 356777777777 5552 233445567777777777765442 223334455 5777777777 666 4
Q ss_pred ccccccCCCCCCEEEcCCCCCccc-CHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhcc
Q 012641 262 LHVGEGELIDLQYLNLSNTNICEL-PIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 340 (459)
Q Consensus 262 lP~~i~~L~~L~~L~l~~~~l~~l-p~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L 340 (459)
+|..+..+++|++|++++|.+... +..+.. .....+++|++|++++|.+... ........+..+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------~l~~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~ 169 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------GLLDPQCRLEKLQLEYCSLSAA--------SCEPLASVLRAK 169 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------HHTSTTCCCCEEECTTSCCBGG--------GHHHHHHHHHHC
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHH-------HHhcCCCcceEEECCCCCCCHH--------HHHHHHHHHhhC
Confidence 566777777777777777766532 111111 1022345666666666654210 000123444555
Q ss_pred ccCceeEEEEe
Q 012641 341 KHLQEISVIIL 351 (459)
Q Consensus 341 ~~L~~L~l~~~ 351 (459)
++|+.|+++.+
T Consensus 170 ~~L~~L~L~~n 180 (461)
T 1z7x_W 170 PDFKELTVSNN 180 (461)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECcCC
Confidence 66666666543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=100.36 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=89.6
Q ss_pred ceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcC
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLS 278 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~ 278 (459)
.+.+.+.++ .+..+|..+ .++|++|++++|.+..+++..|..+++|++|+|++| .++.+|.. ++.+++|++|+++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 356888888 888887555 388999999999999998777999999999999999 99999775 5899999999999
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+|.++.+|.+ .+.++++|++|++++|..
T Consensus 87 ~N~l~~~~~~-----------~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRG-----------AFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTT-----------TTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHH-----------HhcCCCCCCEEEeCCCCC
Confidence 9999887642 288999999999999986
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-11 Score=128.32 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=99.5
Q ss_pred cccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCE
Q 012641 195 ASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQY 274 (459)
Q Consensus 195 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~ 274 (459)
.....++.|.+.+| .+..+|..+..+++|++|++++|.+..+|.. |+.+++|++|+|++| .++.+|..++.|.+|++
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence 34578999999999 8989987788999999999999999999987 899999999999999 99999999999999999
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCC
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAG 319 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~ 319 (459)
|+|++|.+..+|. . +++|++|++|++++|.+..
T Consensus 298 L~L~~N~l~~lp~-----------~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 298 FYFFDNMVTTLPW-----------E-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EECCSSCCCCCCS-----------S-TTSCTTCCCEECTTSCCCS
T ss_pred EECCCCCCCccCh-----------h-hhcCCCccEEeCCCCccCC
Confidence 9999999887664 4 8999999999999998743
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-12 Score=121.65 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=113.6
Q ss_pred CCCCcceeeeeecccccccch----hHHhcCC-CccEEEccCCCCcccc-cccccCC-----CCCCEEEcCCCCCcccC-
Q 012641 219 PCCPRLLTLLVRYTMIKEFEN----KFFQSMH-ALRVLDSSQNAKLSKL-HVGEGEL-----IDLQYLNLSNTNICELP- 286 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~i~~l-P~~i~~L-----~~L~~L~l~~~~l~~lp- 286 (459)
...++|++|++++|.+...+. +.+..++ +|++|+|++| .+... +..++.+ .+|++|++++|.+...+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 345569999999999888886 6688888 9999999999 88865 5556654 89999999999988654
Q ss_pred HHHHHhhhhCCCCcCCCC-CCCCEeeecCCCCCCcCCCCCCCCccccchhh----hhcc-ccCceeEEEEeChhh--hhh
Q 012641 287 IGIKKNLKAIPAGMLSSL-LSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE----LESL-KHLQEISVIILTLDS--LNK 358 (459)
Q Consensus 287 ~~i~~Ll~~lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~----l~~L-~~L~~L~l~~~~~~~--~~~ 358 (459)
..+... +..+ ++|++|++++|.+. ...... +..+ ++|+.|+++.+.... ...
T Consensus 98 ~~l~~~--------l~~~~~~L~~L~Ls~N~l~------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 98 DELVKT--------LAAIPFTITVLDLGWNDFS------------SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp HHHHHH--------HHTSCTTCCEEECCSSCGG------------GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred HHHHHH--------HHhCCCCccEEECcCCcCC------------cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 333332 2223 46667777666652 222222 2222 456666654332221 111
Q ss_pred hhcchh-HHhhhhhhhccCCCCC----------------CccccCcccc--CC----ccCc---ccccCccEEEEecCCC
Q 012641 359 LKSSSK-LQSCVRRQVMGLPELS----------------SLIDISSSSL--TT----MMKG---HFSQNLQDLSIINCSI 412 (459)
Q Consensus 359 l~~~~~-l~~~L~~L~l~~~~l~----------------~l~~~~l~~~--~~----~i~~---~~l~~L~~L~L~~~~l 412 (459)
+..... ....|+.|+++.+.+. +|+.+++... .. .++. ...++|++|+|++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 111111 1113444444333321 2222222220 00 0111 1135899999999977
Q ss_pred CCCcc------cccCCCcceeecccCc
Q 012641 413 KDLTC------ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 413 ~~lp~------l~~l~~L~~L~l~~c~ 433 (459)
...+. +..+++|++|++++|.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 66542 4677889999998854
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=118.09 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=98.0
Q ss_pred CCCCcceeee-eecccccccchhH-----Hhc--CCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHH
Q 012641 219 PCCPRLLTLL-VRYTMIKEFENKF-----FQS--MHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK 290 (459)
Q Consensus 219 ~~~~~L~~L~-l~~~~~~~~~~~~-----~~~--l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~ 290 (459)
..+++|+.|+ +..|.+..++.-. +.. ...|++|+|++| .++.+|. ++.+++|++|++++|.++.+|..
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~-- 481 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPA-- 481 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGG--
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchh--
Confidence 4567777777 4544332222211 111 135899999999 8988987 99999999999999988887764
Q ss_pred HhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhh
Q 012641 291 KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVR 370 (459)
Q Consensus 291 ~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~ 370 (459)
+++|++|++|++++|.+. . .+ .+++|++|+.|+++.+....+.. +........|+
T Consensus 482 ----------~~~l~~L~~L~Ls~N~l~------------~-lp-~l~~l~~L~~L~Ls~N~l~~~~~-p~~l~~l~~L~ 536 (567)
T 1dce_A 482 ----------LAALRCLEVLQASDNALE------------N-VD-GVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLV 536 (567)
T ss_dssp ----------GGGCTTCCEEECCSSCCC------------C-CG-GGTTCSSCCEEECCSSCCCSSST-TGGGGGCTTCC
T ss_pred ----------hhcCCCCCEEECCCCCCC------------C-Cc-ccCCCCCCcEEECCCCCCCCCCC-cHHHhcCCCCC
Confidence 778899999999998863 2 34 78889999999887554333210 22223334566
Q ss_pred hhhccCCCCCCccccCccccCCccCc--ccccCccEEEE
Q 012641 371 RQVMGLPELSSLIDISSSSLTTMMKG--HFSQNLQDLSI 407 (459)
Q Consensus 371 ~L~l~~~~l~~l~~~~l~~~~~~i~~--~~l~~L~~L~L 407 (459)
.|+++.+.+..+. ..+.. ..+++|+.|++
T Consensus 537 ~L~L~~N~l~~~~--------~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 537 LLNLQGNSLCQEE--------GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECTTSGGGGSS--------SCTTHHHHHCTTCSEEEC
T ss_pred EEEecCCcCCCCc--------cHHHHHHHHCcccCccCC
Confidence 6766666554432 11111 23678888753
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-11 Score=123.42 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=104.5
Q ss_pred ccceEEEeecCCCccccC--CCCCCCCcceeeeeeccccc-----ccchhHHhcCCCccEEEccCCCCcccc-cccc-cC
Q 012641 198 NEAVRVSLWRSPSIDSLS--PTPPCCPRLLTLLVRYTMIK-----EFENKFFQSMHALRVLDSSQNAKLSKL-HVGE-GE 268 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i-~~ 268 (459)
+.++.|.+.++ .+...+ ..+..+++|++|++++|.+. .++.. +..+++|++|++++| .+... +..+ ..
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSN-ELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence 46888999888 666543 22567889999999999766 33433 788899999999999 77653 3233 33
Q ss_pred CC----CCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc-----
Q 012641 269 LI----DLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES----- 339 (459)
Q Consensus 269 L~----~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 339 (459)
+. +|++|++++|.+.... ...+|.. +.++++|++|++++|.+ ....+..+..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~------~~~l~~~-l~~~~~L~~L~Ls~n~i------------~~~~~~~l~~~l~~~ 140 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAG------CGVLSST-LRTLPTLQELHLSDNLL------------GDAGLQLLCEGLLDP 140 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGG------HHHHHHH-TTSCTTCCEEECCSSBC------------HHHHHHHHHHHHTST
T ss_pred HhhCCCceeEEEccCCCCCHHH------HHHHHHH-HccCCceeEEECCCCcC------------chHHHHHHHHHHhcC
Confidence 44 7999999999887432 0112333 88899999999999986 3333443333
Q ss_pred cccCceeEEEEeChhh--hhhhhcchhHHhhhhhhhccCCC
Q 012641 340 LKHLQEISVIILTLDS--LNKLKSSSKLQSCVRRQVMGLPE 378 (459)
Q Consensus 340 L~~L~~L~l~~~~~~~--~~~l~~~~~l~~~L~~L~l~~~~ 378 (459)
.++|+.|+++.+.... ...+.........|+.|+++.+.
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 5679999986543322 22233322223456777765444
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-11 Score=110.31 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=96.7
Q ss_pred ceeeeeecc--cccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcC
Q 012641 224 LLTLLVRYT--MIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGML 301 (459)
Q Consensus 224 L~~L~l~~~--~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i 301 (459)
++...+.++ .+..+|.. +..+++|++|++++| .+..+| .++.+++|++|++++|.+..+|.. +
T Consensus 25 l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~------------~ 89 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENL------------D 89 (198)
T ss_dssp CSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSH------------H
T ss_pred hheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccch------------h
Confidence 334444433 45566654 888888888888888 888888 788888888888888888777653 4
Q ss_pred CCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCC
Q 012641 302 SSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSS 381 (459)
Q Consensus 302 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~ 381 (459)
..+++|++|++++|.+. . +..++.+++|+.|++..+....+..+ ..+
T Consensus 90 ~~~~~L~~L~L~~N~l~------------~--l~~~~~l~~L~~L~l~~N~i~~~~~~-------~~l------------ 136 (198)
T 1ds9_A 90 AVADTLEELWISYNQIA------------S--LSGIEKLVNLRVLYMSNNKITNWGEI-------DKL------------ 136 (198)
T ss_dssp HHHHHCSEEEEEEEECC------------C--HHHHHHHHHSSEEEESEEECCCHHHH-------HHH------------
T ss_pred hcCCcCCEEECcCCcCC------------c--CCccccCCCCCEEECCCCcCCchhHH-------HHH------------
Confidence 45678888888888762 1 33677888888888865533322111 000
Q ss_pred ccccCccccCCccCcccccCccEEEEecCCCCCC-cc-----------cccCCCcceeec
Q 012641 382 LIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDL-TC-----------ILYIPRLRFLFA 429 (459)
Q Consensus 382 l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~l-p~-----------l~~l~~L~~L~l 429 (459)
..+++|++|++++|.+... |. +..+|+|++|+-
T Consensus 137 ---------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 137 ---------------AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp ---------------TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred ---------------hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 1267888888888854333 21 577888888873
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.9e-10 Score=95.31 Aligned_cols=111 Identities=19% Similarity=0.099 Sum_probs=94.7
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
..+...+..+..+|... ...++.|.+.+| .+..++ ..+..+++|++|++++|.+..+|+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 34555666677777543 278999999999 898885 56789999999999999999999987899999999999999
Q ss_pred Cccccccc-ccCCCCCCEEEcCCCCCcccCHHHHHh
Q 012641 258 KLSKLHVG-EGELIDLQYLNLSNTNICELPIGIKKN 292 (459)
Q Consensus 258 ~i~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~L 292 (459)
.+..+|.. ++.+++|++|++++|.+...|..+..+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHHH
Confidence 99999876 899999999999999999888766554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-11 Score=109.15 Aligned_cols=105 Identities=23% Similarity=0.229 Sum_probs=53.3
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
+.++.|.+.+| .+..+| .+..+++|++|++++|.+..+|.. +..+++|++|++++| .+..+| .++.+++|++|++
T Consensus 48 ~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEEC
Confidence 44555555555 555542 444455555555555555555443 444455555555555 555554 3555555555555
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
++|.+..+|.- . . +.++++|++|++.+|.+
T Consensus 123 ~~N~i~~~~~~-~--------~-l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 123 SNNKITNWGEI-D--------K-LAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEECCCHHHH-H--------H-HTTTTTCSEEEECSCHH
T ss_pred CCCcCCchhHH-H--------H-HhcCCCCCEEEecCCcc
Confidence 55555544320 0 1 44555555555555543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=91.43 Aligned_cols=109 Identities=17% Similarity=0.065 Sum_probs=91.7
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+..+..+|... ...++.|.+.+| .+..++ ..+..+++|++|++++|.+..+|+..|..+++|++|+|++| .+
T Consensus 14 l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l 90 (170)
T 3g39_A 14 VDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QL 90 (170)
T ss_dssp EECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-cc
Confidence 445556667776533 378999999999 998885 55789999999999999999999988899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHh
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKN 292 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~L 292 (459)
+.+|.. ++.+++|++|++++|++...+..+..+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence 999764 899999999999999988776554443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=5e-10 Score=116.40 Aligned_cols=141 Identities=19% Similarity=0.182 Sum_probs=89.5
Q ss_pred ccccceEEEeecCCCccc-----cCCCCCCCCcceeeeeecccccccch----hHHhcCCCccEEEccCCCCcccccccc
Q 012641 196 SWNEAVRVSLWRSPSIDS-----LSPTPPCCPRLLTLLVRYTMIKEFEN----KFFQSMHALRVLDSSQNAKLSKLHVGE 266 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~Lr~L~L~~~~~i~~lP~~i 266 (459)
..++++.|.+.++ .+.. ++.....+++|++|++++|. ..+.. .++..+++|++|++++|..+..+|..+
T Consensus 154 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 154 TCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp HCTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred hCCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 4578888988887 5443 22233467899999998885 22222 224567999999999886677788888
Q ss_pred cCCCCCCEEEcCCCCC-------cccCHHHHHh--h-----------hhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCC
Q 012641 267 GELIDLQYLNLSNTNI-------CELPIGIKKN--L-----------KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSV 326 (459)
Q Consensus 267 ~~L~~L~~L~l~~~~l-------~~lp~~i~~L--l-----------~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 326 (459)
..+++|++|+++++.. ..++..+..+ + ..+|.. +..+++|++|++++|.+.
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~-------- 302 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-YSVCSRLTTLNLSYATVQ-------- 302 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG-HHHHTTCCEEECTTCCCC--------
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH-HHhhCCCCEEEccCCCCC--------
Confidence 8889999998766532 2222222221 1 112222 335688899999888752
Q ss_pred CCccccchhhhhccccCceeEEEE
Q 012641 327 PGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 327 ~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
......-+.++++|+.|++..
T Consensus 303 ---~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 303 ---SYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp ---HHHHHHHHTTCTTCCEEEEEG
T ss_pred ---HHHHHHHHhcCCCcCEEeCcC
Confidence 122233356778888888864
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.80 E-value=9.2e-09 Score=99.43 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=76.3
Q ss_pred CccccCCCCCCCCcceeeeeec-ccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcCCCCCcccCH
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRY-TMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELPI 287 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~ 287 (459)
.+..+|. +..+++|+.|++++ |.+..+++..|..+.+|++|+|++| .+..+| ..++.|.+|++|+|++|.+..+|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 4677766 88888899999986 8888888777889999999999999 888875 467889999999999998887764
Q ss_pred HHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 288 GIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 288 ~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
+ .+..+. |+.|++.+|.+.
T Consensus 98 ~-----------~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 K-----------TVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp T-----------TTCSCC-CCEEECCSSCCC
T ss_pred H-----------HcccCC-ceEEEeeCCCcc
Confidence 3 144454 899999888763
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-09 Score=111.81 Aligned_cols=139 Identities=10% Similarity=-0.017 Sum_probs=80.8
Q ss_pred cccceEEEeecCCCccccC-----CCCCCCCcceeeeeecccccccc----hhHHhcCCCccEEEccCCCCccccccccc
Q 012641 197 WNEAVRVSLWRSPSIDSLS-----PTPPCCPRLLTLLVRYTMIKEFE----NKFFQSMHALRVLDSSQNAKLSKLHVGEG 267 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~ 267 (459)
.++++.|.+.++ .+.... .....+++|++|++++|.+..+. ...+..+++|++|++++| .+..+|..++
T Consensus 163 ~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp CTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred CCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 467777777777 443221 12235677777877777554222 222556778888888877 7777777777
Q ss_pred CCCCCCEEEcCCCCCc----ccCHHHHH------h------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccc
Q 012641 268 ELIDLQYLNLSNTNIC----ELPIGIKK------N------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV 331 (459)
Q Consensus 268 ~L~~L~~L~l~~~~l~----~lp~~i~~------L------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 331 (459)
.+++|++|+++++... ..+..+.. + ...+|.. +..+++|++|++++|... ..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l~-----------~~ 308 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLE-----------TE 308 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCCC-----------HH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCCCcEEecCCCcCC-----------HH
Confidence 7777777777643111 11111000 0 1223333 566778888888887742 22
Q ss_pred cchhhhhccccCceeEEE
Q 012641 332 LLLEELESLKHLQEISVI 349 (459)
Q Consensus 332 ~~~~~l~~L~~L~~L~l~ 349 (459)
....-+..+++|+.|++.
T Consensus 309 ~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHHhCcCCCEEecc
Confidence 223446778888888886
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-09 Score=110.25 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=67.4
Q ss_pred ccceEEEeecCCCccccC-CCCC-CCCcceeeeeecc-ccccc-chhHHhcCCCccEEEccCCCCccc-----ccccccC
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPP-CCPRLLTLLVRYT-MIKEF-ENKFFQSMHALRVLDSSQNAKLSK-----LHVGEGE 268 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~Lr~L~L~~~~~i~~-----lP~~i~~ 268 (459)
+.++.|.+.++ .+.... ..+. .+++|++|++.+| .+... ...++..+++|++|++++| .+.. ++.....
T Consensus 105 ~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHhhc
Confidence 45666776666 443211 1222 4567777777666 33321 2222446677777777776 4432 2333335
Q ss_pred CCCCCEEEcCCCCCcccC-HHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 269 LIDLQYLNLSNTNICELP-IGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 269 L~~L~~L~l~~~~l~~lp-~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
+++|++|++++|. ..++ ..+..+ +.++++|++|++.+|.. ....+..+..+++|+.|+
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l--------~~~~~~L~~L~L~~~~~------------~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERL--------VTRCPNLKSLKLNRAVP------------LEKLATLLQRAPQLEELG 241 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHH--------HHHCTTCCEEECCTTSC------------HHHHHHHHHHCTTCSEEE
T ss_pred CCcCcEEEecccC-CcCCHHHHHHH--------HHhCCCCcEEecCCCCc------------HHHHHHHHhcCCcceEcc
Confidence 5677777777665 2222 111110 23456777777776632 222555666677777776
Q ss_pred E
Q 012641 348 V 348 (459)
Q Consensus 348 l 348 (459)
+
T Consensus 242 l 242 (594)
T 2p1m_B 242 T 242 (594)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.73 E-value=5e-08 Score=93.57 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=36.0
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEc
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNL 277 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l 277 (459)
|++|+.|.+.. .+..++...|.++.+|+.+++..| .+..++ ..+....++.++..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecC
Confidence 77888888777 677777777888888888888877 665553 33444444444443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=7.4e-09 Score=107.52 Aligned_cols=213 Identities=12% Similarity=0.077 Sum_probs=110.6
Q ss_pred cceEEEeecCCCccc--cCCCCCCCCcceeeeeeccccccc----chhHHhcCCCccEEEccCCCCcc-----ccccccc
Q 012641 199 EAVRVSLWRSPSIDS--LSPTPPCCPRLLTLLVRYTMIKEF----ENKFFQSMHALRVLDSSQNAKLS-----KLHVGEG 267 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~i~-----~lP~~i~ 267 (459)
+++.|.+.++..+.. ++.....+++|++|++++|.+... ...++..+++|++|++++| .+. .++..+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHh
Confidence 377777766621211 111123567888888887754433 1233567788888888877 654 4455566
Q ss_pred CCCCCCEEEcCCCCCcccCHHHHHh-------h---------hhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccc
Q 012641 268 ELIDLQYLNLSNTNICELPIGIKKN-------L---------KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV 331 (459)
Q Consensus 268 ~L~~L~~L~l~~~~l~~lp~~i~~L-------l---------~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 331 (459)
.+++|++|++++|.+..+|..+..+ + ...+.. +..+++|+.|.+.++. ..
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~-------------~~ 283 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLCRLGLSYMG-------------PN 283 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCCEEEETTCC-------------TT
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhccccccccCccccc-------------hh
Confidence 7788888888888777777654443 1 112222 4455555555554432 22
Q ss_pred cchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEec--
Q 012641 332 LLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIIN-- 409 (459)
Q Consensus 332 ~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~-- 409 (459)
..+..+..+++|+.|+++.+.... ..+........+|+.|++. +.+ .+..+ +.. ...+++|++|++++
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~-~~~~~~~~~~~~L~~L~L~-~~~---~~~~l---~~~--~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLET-EDHCTLIQKCPNLEVLETR-NVI---GDRGL---EVL--AQYCKQLKRLRIERGA 353 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCH-HHHHHHHTTCTTCCEEEEE-GGG---HHHHH---HHH--HHHCTTCCEEEEECCC
T ss_pred HHHHHHhhcCCCcEEecCCCcCCH-HHHHHHHHhCcCCCEEecc-Ccc---CHHHH---HHH--HHhCCCCCEEEeecCc
Confidence 344455566677777665332111 0110001111123333322 000 00000 000 03467899999994
Q ss_pred --------C-CCCC--Ccc-cccCCCcceeecccCcchhh
Q 012641 410 --------C-SIKD--LTC-ILYIPRLRFLFAKDCPSLEE 437 (459)
Q Consensus 410 --------~-~l~~--lp~-l~~l~~L~~L~l~~c~~l~~ 437 (459)
| .+.. ++. ...+++|++|++ .|+++..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~ 392 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITN 392 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCH
T ss_pred cccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccH
Confidence 5 5443 223 355899999999 4555543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-07 Score=90.52 Aligned_cols=104 Identities=15% Similarity=0.041 Sum_probs=87.9
Q ss_pred EEecCC-CccccccccccccceEEEeec-CCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 181 VFQETD-KSIKVQETASWNEAVRVSLWR-SPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 181 ~~~~~~-~~~~~~~~~~~~~~r~l~l~~-~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
+.+.+. .+..+|......+++.|.+.+ | .+..++ ..+..+++|+.|++++|.+..+++..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence 344555 677787766667899999996 8 899887 46889999999999999999999888999999999999999
Q ss_pred CcccccccccCCCCCCEEEcCCCCCcccC
Q 012641 258 KLSKLHVGEGELIDLQYLNLSNTNICELP 286 (459)
Q Consensus 258 ~i~~lP~~i~~L~~L~~L~l~~~~l~~lp 286 (459)
.+..+|..+.....|++|++.+|.+....
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 99999877655555999999999887543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-08 Score=93.34 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=58.7
Q ss_pred cccceEEEeecCCCccccCCCCCC-CCcceeeeeeccccc--------------------ccchhHHhc--------CCC
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPC-CPRLLTLLVRYTMIK--------------------EFENKFFQS--------MHA 247 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~ 247 (459)
+.+++.|.+.++-...++ ..+.. +++|++|++++|.+. .+|...|.+ +.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 455666666654111111 11222 566777777777555 567777888 999
Q ss_pred ccEEEccCCCCccccc-ccccCCCCCCEEEcCCCCCcccCH
Q 012641 248 LRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELPI 287 (459)
Q Consensus 248 Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~ 287 (459)
|+.+++.. .++.++ ..+..+.+|+.+++++|.+..++.
T Consensus 103 L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~ 141 (329)
T 3sb4_A 103 LEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP 141 (329)
T ss_dssp CCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECT
T ss_pred CcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccch
Confidence 99999987 477775 457889999999999998776654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.6e-08 Score=94.30 Aligned_cols=138 Identities=16% Similarity=0.104 Sum_probs=82.6
Q ss_pred ccceEEEeecCCCccccC-----CCCC-CCCcceeeeeecccccccc-hhHHhcCCCccEEEccCCCCcccc-----ccc
Q 012641 198 NEAVRVSLWRSPSIDSLS-----PTPP-CCPRLLTLLVRYTMIKEFE-NKFFQSMHALRVLDSSQNAKLSKL-----HVG 265 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-----~~~~-~~~~L~~L~l~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~i~~l-----P~~ 265 (459)
+.++.+.+.++ .+.... ..+. ..++|++|++++|.+.... ..+...+++|+.|+|++| .++.. ...
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 56888888888 665421 1111 3368888888888664322 222445678888888888 77543 122
Q ss_pred c-cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCc
Q 012641 266 E-GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 344 (459)
Q Consensus 266 i-~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 344 (459)
+ ....+|++|++++|.+.... . ..++.. +..+++|++|++++|.+... ........+...++|+
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~--~----~~l~~~-L~~~~~L~~L~Ls~N~l~~~--------g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAG--V----AVLMEG-LAGNTSVTHLSLLHTGLGDE--------GLELLAAQLDRNRQLQ 214 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHH--H----HHHHHH-HHTCSSCCEEECTTSSCHHH--------HHHHHHHHGGGCSCCC
T ss_pred HHhcCCccceeeCCCCCCChHH--H----HHHHHH-HhcCCCcCEEeCCCCCCCcH--------HHHHHHHHHhcCCCcC
Confidence 2 24577888888888776421 1 112222 45677888888888876210 0011245566677788
Q ss_pred eeEEEEeC
Q 012641 345 EISVIILT 352 (459)
Q Consensus 345 ~L~l~~~~ 352 (459)
.|+++.+.
T Consensus 215 ~L~Ls~N~ 222 (372)
T 3un9_A 215 ELNVAYNG 222 (372)
T ss_dssp EEECCSSC
T ss_pred eEECCCCC
Confidence 88776543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-07 Score=92.96 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=38.4
Q ss_pred cceEEEeecCCCccccC-CCC-CCCCcceeeeeecccccccchhHH-----hcCCCccEEEccCCCCccc-----ccccc
Q 012641 199 EAVRVSLWRSPSIDSLS-PTP-PCCPRLLTLLVRYTMIKEFENKFF-----QSMHALRVLDSSQNAKLSK-----LHVGE 266 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~Lr~L~L~~~~~i~~-----lP~~i 266 (459)
.++.|.+.+| .++... ..+ ..+++|+.|++++|.+.......+ .....|++|+|++| .++. ++..+
T Consensus 102 ~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L 179 (372)
T 3un9_A 102 ALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179 (372)
T ss_dssp CEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred CceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence 4555555555 443210 111 123455556665554433222222 12355566666655 4442 33334
Q ss_pred cCCCCCCEEEcCCCCCc
Q 012641 267 GELIDLQYLNLSNTNIC 283 (459)
Q Consensus 267 ~~L~~L~~L~l~~~~l~ 283 (459)
...++|++|+|++|.+.
T Consensus 180 ~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HTCSSCCEEECTTSSCH
T ss_pred hcCCCcCEEeCCCCCCC
Confidence 45555666666655544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.05 E-value=4.6e-05 Score=74.86 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=44.3
Q ss_pred cceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCC
Q 012641 223 RLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLS 302 (459)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~ 302 (459)
+|+.+.+.. .+..++...|.++.+|+.+++..| .+..+|...-...+|+.+.+..+ ++.+ +..++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I-----------~~~aF~ 223 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEI-----------GSQAFL 223 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEE-----------CTTTTT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hhee-----------hhhHhh
Confidence 466655543 455555555666666666666666 66666544433456666666532 4433 334466
Q ss_pred CCCCCCEeeecC
Q 012641 303 SLLSLRVFSWVP 314 (459)
Q Consensus 303 ~L~~L~~L~l~~ 314 (459)
++.+|+.+.+..
T Consensus 224 ~~~~L~~l~l~~ 235 (401)
T 4fdw_A 224 KTSQLKTIEIPE 235 (401)
T ss_dssp TCTTCCCEECCT
T ss_pred CCCCCCEEecCC
Confidence 666666666654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-06 Score=82.78 Aligned_cols=104 Identities=10% Similarity=0.007 Sum_probs=58.7
Q ss_pred ccceEEEeecCCCcc--c-------cCCCCCCCCcceeeeeeccccc---------ccchhHHhcCCCccEEEccCCCCc
Q 012641 198 NEAVRVSLWRSPSID--S-------LSPTPPCCPRLLTLLVRYTMIK---------EFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~--~-------~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
..++.|.+... ... . +......+++|+.|.+...... .-...++..+++|+.|+++++ .-
T Consensus 107 ~~v~~L~lg~~-~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~-~~ 184 (362)
T 2ra8_A 107 PSLKQITIGXW-GYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT-NN 184 (362)
T ss_dssp GGCSEEEECCC-CSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC-BT
T ss_pred hhcceEEEccc-ccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC-CC
Confidence 45677777654 222 0 1122345678888877544211 012244677788888888877 32
Q ss_pred ccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecC
Q 012641 260 SKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVP 314 (459)
Q Consensus 260 ~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~ 314 (459)
..+|. +. +.+|++|++..|.+.. ..+.. + . ..++++|++|+++.
T Consensus 185 l~l~~-~~-~~~L~~L~L~~~~l~~--~~l~~----l--~-~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 185 LSIGK-KP-RPNLKSLEIISGGLPD--SVVED----I--L-GSDLPNLEKLVLYV 228 (362)
T ss_dssp CBCCS-CB-CTTCSEEEEECSBCCH--HHHHH----H--H-HSBCTTCCEEEEEC
T ss_pred ceecc-cc-CCCCcEEEEecCCCCh--HHHHH----H--H-HccCCCCcEEEEec
Confidence 24554 43 7788888888776531 11111 0 0 23677888888753
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.96 E-value=5.8e-05 Score=74.11 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=62.0
Q ss_pred cceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEE
Q 012641 199 EAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLN 276 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~ 276 (459)
.++.+.+.. .+..+. ..+..|++|+.+.+..|.+..++...|. ...|+.+.+..+ +..++ ..+..+.+|+.++
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEe
Confidence 567777764 466665 5678899999999998888889888776 589999998844 77774 4567888999999
Q ss_pred cCCCCCcccC
Q 012641 277 LSNTNICELP 286 (459)
Q Consensus 277 l~~~~l~~lp 286 (459)
+..+ ++.++
T Consensus 233 l~~~-l~~I~ 241 (401)
T 4fdw_A 233 IPEN-VSTIG 241 (401)
T ss_dssp CCTT-CCEEC
T ss_pred cCCC-ccCcc
Confidence 8764 44444
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.2e-05 Score=68.93 Aligned_cols=92 Identities=17% Similarity=0.434 Sum_probs=59.1
Q ss_pred CCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccc
Q 012641 305 LSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLID 384 (459)
Q Consensus 305 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~ 384 (459)
-+|++|++++|.+ +......+..+++|+.|+++.+. .+.+ ..++.+.- +
T Consensus 61 ~~L~~LDLs~~~I------------td~GL~~L~~~~~L~~L~L~~C~--~ItD--------~gL~~L~~-------~-- 109 (176)
T 3e4g_A 61 YKIQAIDATDSCI------------MSIGFDHMEGLQYVEKIRLCKCH--YIED--------GCLERLSQ-------L-- 109 (176)
T ss_dssp CCEEEEEEESCCC------------CGGGGGGGTTCSCCCEEEEESCT--TCCH--------HHHHHHHT-------C--
T ss_pred ceEeEEeCcCCCc------------cHHHHHHhcCCCCCCEEEeCCCC--ccCH--------HHHHHHHh-------c--
Confidence 4688888888876 45566777888888888887432 1100 00111100 0
Q ss_pred cCccccCCccCcccccCccEEEEecC-CCCC--CcccccCCCcceeecccCcchhhh
Q 012641 385 ISSSSLTTMMKGHFSQNLQDLSIINC-SIKD--LTCILYIPRLRFLFAKDCPSLEEI 438 (459)
Q Consensus 385 ~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~--lp~l~~l~~L~~L~l~~c~~l~~i 438 (459)
....++|++|+|++| ++++ +..+..+++|++|+|++|+++++.
T Consensus 110 -----------~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 110 -----------ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -----------HHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred -----------ccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 001347888888888 6776 335677888999999998888764
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=2.5e-05 Score=67.97 Aligned_cols=120 Identities=15% Similarity=0.062 Sum_probs=81.5
Q ss_pred CCCCCcceeeeeecc-cccc-----cchhHHhcCCCccEEEccCCCCccc-----ccccccCCCCCCEEEcCCCCCcccC
Q 012641 218 PPCCPRLLTLLVRYT-MIKE-----FENKFFQSMHALRVLDSSQNAKLSK-----LHVGEGELIDLQYLNLSNTNICELP 286 (459)
Q Consensus 218 ~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~Lr~L~L~~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~lp 286 (459)
+...+.|++|++++| .+.. +.. .+...+.|++|+|++| .+.. +...+...++|++|+|++|.|..-
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~- 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS- 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH-
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH-
Confidence 355788999999988 6643 322 2667789999999999 7763 445566678899999999988742
Q ss_pred HHHHHhhhhCCCCcCCCCCCCCEeee--cCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 287 IGIKKNLKAIPAGMLSSLLSLRVFSW--VPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 287 ~~i~~Ll~~lp~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
+... +... +...++|++|++ .+|.+.. .........+...++|+.|++..+...
T Consensus 109 -g~~~----l~~~-L~~n~~L~~L~L~~~~N~i~~--------~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 -GILA----LVEA-LQSNTSLIELRIDNQSQPLGN--------NVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -HHHH----HHHG-GGGCSSCCEEECCCCSSCCCH--------HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -HHHH----HHHH-HHhCCCceEEEecCCCCCCCH--------HHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2211 2222 566788999999 7787621 000113455666789999999766544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.75 E-value=9.7e-06 Score=74.62 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=68.5
Q ss_pred CCCccee--eeeecccccccc---hhHHhcCCCccEEEccCCCCccccc---ccccCCCCCCEEEcCCCCCcccCHHHHH
Q 012641 220 CCPRLLT--LLVRYTMIKEFE---NKFFQSMHALRVLDSSQNAKLSKLH---VGEGELIDLQYLNLSNTNICELPIGIKK 291 (459)
Q Consensus 220 ~~~~L~~--L~l~~~~~~~~~---~~~~~~l~~Lr~L~L~~~~~i~~lP---~~i~~L~~L~~L~l~~~~l~~lp~~i~~ 291 (459)
..+.|.. +++..|....++ ......+++|+.|+|++| .+..++ ..++.+++|++|+|++|.++.+.. +..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhh
Confidence 3344554 445555333332 222357899999999999 887654 566789999999999999887632 211
Q ss_pred hhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 292 NLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 292 Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
+..+ +|++|++.+|.+.. .++........-+..+++|+.|+
T Consensus 217 ---------l~~l-~L~~L~L~~Npl~~-----~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 ---------IKGL-KLEELWLDGNSLCD-----TFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ---------GTTS-CCSEEECTTSTTGG-----GCSSHHHHHHHHHHHCTTCCEES
T ss_pred ---------cccC-CcceEEccCCcCcc-----ccCcchhHHHHHHHHCcccCeEC
Confidence 4444 89999999998631 00000011123456677777764
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.68 E-value=6.4e-05 Score=64.27 Aligned_cols=94 Identities=10% Similarity=0.070 Sum_probs=66.0
Q ss_pred ccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCC----CCCCEEEcCCC-CCcccC
Q 012641 213 SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGEL----IDLQYLNLSNT-NICELP 286 (459)
Q Consensus 213 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L----~~L~~L~l~~~-~l~~lp 286 (459)
.+|.....-.+|+.|++++|.+....-..+.++++|+.|+|++|..++.- -..++.+ ++|++|++++| .++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-- 129 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-- 129 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--
Confidence 34333334457999999999766554445788999999999999656532 1235554 36999999998 4664
Q ss_pred HHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 287 IGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 287 ~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.++.. +.++++|++|++++|..
T Consensus 130 ~Gl~~---------L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 130 KGIIA---------LHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHHHH---------GGGCTTCCEEEEESCTT
T ss_pred HHHHH---------HhcCCCCCEEECCCCCC
Confidence 23333 66789999999999864
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00015 Score=70.07 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=73.9
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHh--cCCCccEEEccCCC-------Ccccccccc-
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQ--SMHALRVLDSSQNA-------KLSKLHVGE- 266 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~Lr~L~L~~~~-------~i~~lP~~i- 266 (459)
.+.++.|.+.++ .--.+++ + .+++|+.|.+..|.+..-.-..+. .+++|+.|+|+.+. .+..+...+
T Consensus 171 ~P~L~~L~L~g~-~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGT-NNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECC-BTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCC-CCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 357888888776 2223322 2 377888888877654322222233 67888888875310 122222222
Q ss_pred -cCCCCCCEEEcCCCCCcc-cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCcc--ccchhhhhcccc
Q 012641 267 -GELIDLQYLNLSNTNICE-LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT--VLLLEELESLKH 342 (459)
Q Consensus 267 -~~L~~L~~L~l~~~~l~~-lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~L~~ 342 (459)
+.+++|++|++++|.+.. .+..+.. ...+++|++|+++.|.+.. . ......+.++++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~---------a~~~~~L~~LdLs~n~L~d----------~G~~~L~~~L~~l~~ 308 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLE---------SDILPQLETMDISAGVLTD----------EGARLLLDHVDKIKH 308 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHH---------CSSGGGCSEEECCSSCCBH----------HHHHHHHTTHHHHTT
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHh---------CccCCCCCEEECCCCCCCh----------HHHHHHHhhcccCCc
Confidence 346788888888776652 1111111 2346788888887776521 1 112344566778
Q ss_pred CceeEEEEe
Q 012641 343 LQEISVIIL 351 (459)
Q Consensus 343 L~~L~l~~~ 351 (459)
|+.|+++.+
T Consensus 309 L~~L~L~~n 317 (362)
T 2ra8_A 309 LKFINMKYN 317 (362)
T ss_dssp CSEEECCSB
T ss_pred ceEEECCCC
Confidence 888877543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.55 E-value=6e-05 Score=69.33 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=62.5
Q ss_pred CCCcceeeeeecccccccch--hHHhcCCCccEEEccCCCCcccccccccCCC--CCCEEEcCCCCCc-ccCHHHHHhhh
Q 012641 220 CCPRLLTLLVRYTMIKEFEN--KFFQSMHALRVLDSSQNAKLSKLHVGEGELI--DLQYLNLSNTNIC-ELPIGIKKNLK 294 (459)
Q Consensus 220 ~~~~L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~--~L~~L~l~~~~l~-~lp~~i~~Ll~ 294 (459)
.+++|++|++++|.+..++. ..+..+++|++|+|++| .+..+. .++.+. +|++|++++|++. .+|..-..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y--- 242 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTY--- 242 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHH---
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhH---
Confidence 57899999999998876653 44789999999999999 888773 355555 9999999999986 35521000
Q ss_pred hCCCCcCCCCCCCCEeeec
Q 012641 295 AIPAGMLSSLLSLRVFSWV 313 (459)
Q Consensus 295 ~lp~~~i~~L~~L~~L~l~ 313 (459)
. ..++..+++|+.|+..
T Consensus 243 -~-~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 -I-SAIRERFPKLLRLDGH 259 (267)
T ss_dssp -H-HHHHHHCTTCCEESSC
T ss_pred -H-HHHHHHCcccCeECCc
Confidence 0 0114556677777754
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0004 Score=60.22 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=63.7
Q ss_pred hHHhcCCCccEEEccCCCCcc-----cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecC
Q 012641 240 KFFQSMHALRVLDSSQNAKLS-----KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVP 314 (459)
Q Consensus 240 ~~~~~l~~Lr~L~L~~~~~i~-----~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~ 314 (459)
..+...+.|++|+|++|..+. .+...+...++|++|+|++|.+.. .+...+ ... +...++|++|++++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~--~g~~~l----~~~-L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND--PVAFAL----AEM-LKVNNTLKSLNVES 102 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH--HHHHHH----HHH-HHHCSSCCEEECCS
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh--HHHHHH----HHH-HHhCCCcCEEECcC
Confidence 347778999999999873443 355667778899999999998863 122111 111 34457899999999
Q ss_pred CCCCCcCCCCCCCCccccchhhhhccccCceeEE
Q 012641 315 TRYAGFNYGSSVPGVTVLLLEELESLKHLQEISV 348 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 348 (459)
|.+.. .........+...++|+.|++
T Consensus 103 N~i~~--------~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 103 NFISG--------SGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp SCCCH--------HHHHHHHHGGGGCSSCCEEEC
T ss_pred CcCCH--------HHHHHHHHHHHhCCCceEEEe
Confidence 98732 001123556677788999998
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.011 Score=47.65 Aligned_cols=54 Identities=26% Similarity=0.397 Sum_probs=37.0
Q ss_pred EEEccCCCCcc--cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 250 VLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 250 ~L~L~~~~~i~--~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+++.+++ .++ .+|..+. .+|++|+|++|.|+.||.+ ++..+.+|+.|++.+|..
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~-----------~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPG-----------LLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTT-----------TGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChh-----------hhhhccccCEEEecCCCe
Confidence 5667777 776 7775432 3677888888877776643 266777788888877764
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.11 Score=50.39 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=66.5
Q ss_pred CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhh
Q 012641 216 PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLK 294 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~ 294 (459)
..+..|.+|+.+.+..+ ...+....|.++..|+.+.+.. .+..++. .+..+.+|+.+++..+ ++.+.
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-------- 326 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQIL-------- 326 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEEC--------
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEeh--------
Confidence 45567777887777543 3456666677788888887753 4666653 4566777888777653 44433
Q ss_pred hCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 295 AIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 295 ~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
..++.++.+|+.+.+..+ . .......+.++++|+.+.+.
T Consensus 327 ---~~aF~~C~~L~~i~ip~s-v------------~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 327 ---DDAFAGCEQLERIAIPSS-V------------TKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp ---TTTTTTCTTCCEEEECTT-C------------CBCCGGGGTTCTTCCEEEES
T ss_pred ---HhHhhCCCCCCEEEECcc-c------------CEEhHhHhhCCCCCCEEEEC
Confidence 334777778887777533 2 22234456677777777664
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.06 Score=43.33 Aligned_cols=54 Identities=15% Similarity=0.017 Sum_probs=33.8
Q ss_pred eeeeeccccc--ccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCCCCCc
Q 012641 226 TLLVRYTMIK--EFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSNTNIC 283 (459)
Q Consensus 226 ~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~l~ 283 (459)
+++.+++.+. .+|.. --.+|++|+|++| .|+.+|.. +..+.+|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 3444455555 55543 1235777777777 77777643 466777777888777653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.33 Score=46.48 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=36.8
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIP 297 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp 297 (459)
..+..|+.+.+..+ +..+....|.++..|+.+.+..+ +..++. .+..+.+|+.+.+.++.++.++.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~---------- 303 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEP---------- 303 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECT----------
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehh----------
Confidence 34444554444332 33444444455555555554322 333332 23445555555555544444332
Q ss_pred CCcCCCCCCCCEeeec
Q 012641 298 AGMLSSLLSLRVFSWV 313 (459)
Q Consensus 298 ~~~i~~L~~L~~L~l~ 313 (459)
.++.++.+|+.+.+.
T Consensus 304 -~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 304 -RVFMDCVKLSSVTLP 318 (379)
T ss_dssp -TTTTTCTTCCEEECC
T ss_pred -hhhcCCCCCCEEEcC
Confidence 225555555555553
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.17 Score=48.94 Aligned_cols=120 Identities=10% Similarity=0.082 Sum_probs=75.7
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L 275 (459)
..++.+.+..+ ...+. ..+..+..++.+..... .++...|..+..|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 253 ~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 253 TDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV---IVPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp SSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS---EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEE
T ss_pred ccceeEEcCCC--cceeeccccccccccceeccCce---eeccccccccccccccccccc--cceechhhhcCCCCCCEE
Confidence 34455555443 22222 45566777777766543 355555778888888888654 66664 446677888888
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
++..+ ++.++ ..++.++++|+.+.+..+ . .......+.++.+|+.+.+.
T Consensus 326 ~lp~~-v~~I~-----------~~aF~~c~~L~~i~lp~~-l------------~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 326 DLPYL-VEEIG-----------KRSFRGCTSLSNINFPLS-L------------RKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCCTT-CCEEC-----------TTTTTTCTTCCEECCCTT-C------------CEECTTTBTTCTTCCEEEEE
T ss_pred EeCCc-ccEEh-----------HHhccCCCCCCEEEECcc-c------------cEehHHHhhCCCCCCEEEEC
Confidence 88643 54443 344888888888888654 2 22234566778888888775
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.42 Score=45.73 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=75.2
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L 275 (459)
..++.+.+..+ +..+. ..+..+.+|+.+.+.. .+..++...|.++.+|+.+.+.++ .++.++ ..+.++.+|+.+
T Consensus 240 ~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 240 KALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp SSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEE
T ss_pred ccceEEEcCCC--ccEeCccccceeehhccccccc-cceecccccccccccccccccccc-ccceehhhhhcCCCCCCEE
Confidence 34555555443 44443 4566788999998864 467788888999999999999988 888885 557788999999
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecC
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVP 314 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~ 314 (459)
.+..+ ++.++ ..++.++++|+.+.+..
T Consensus 316 ~lp~~-l~~I~-----------~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 316 TLPTA-LKTIQ-----------VYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTT-CCEEC-----------TTTTTTCTTCCCCCCCT
T ss_pred EcCcc-ccEEH-----------HHHhhCCCCCCEEEECC
Confidence 99754 55544 34488999999888854
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.66 Score=44.74 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=18.0
Q ss_pred ccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcC
Q 012641 236 EFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLS 278 (459)
Q Consensus 236 ~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~ 278 (459)
.+....|.++..|+.+.+..+ +..+ ...+.+...|+.+.+.
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred EcccceeeecccccEEecccc--cceecCcccccccccccccCC
Confidence 333334555555555555433 2222 1223444555555553
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.9 Score=43.74 Aligned_cols=121 Identities=11% Similarity=0.037 Sum_probs=77.4
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
..++.+.+... +..+. ..+..+..++.+.+..+ ...++...|..+..++......+ .+. ...+....+|+.+.
T Consensus 230 ~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~-~i~--~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 230 TGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV-IVP--EKTFYGCSSLTEVK 303 (394)
T ss_dssp CCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS-EEC--TTTTTTCTTCCEEE
T ss_pred CCCceEEECCC--ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCce-eec--cccccccccccccc
Confidence 34556665443 34443 45567888888888765 33455555888888888877665 322 13456678888888
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
+..+ ++.++ ..++.++.+|+.+.+..+ . .......+.++++|+.+.+.
T Consensus 304 l~~~-i~~I~-----------~~aF~~c~~L~~i~lp~~-v------------~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 304 LLDS-VKFIG-----------EEAFESCTSLVSIDLPYL-V------------EEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp ECTT-CCEEC-----------TTTTTTCTTCCEECCCTT-C------------CEECTTTTTTCTTCCEECCC
T ss_pred cccc-cceec-----------hhhhcCCCCCCEEEeCCc-c------------cEEhHHhccCCCCCCEEEEC
Confidence 8754 54443 344888899999988543 2 22234566778888877763
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=91.32 E-value=0.5 Score=40.77 Aligned_cols=115 Identities=11% Similarity=0.072 Sum_probs=70.6
Q ss_pred CCcceeeeeecc-ccc-----ccchhHHhcCCCccEEEccCCCCccc-----ccccccCCCCCCEEEcCCCCCcccCHHH
Q 012641 221 CPRLLTLLVRYT-MIK-----EFENKFFQSMHALRVLDSSQNAKLSK-----LHVGEGELIDLQYLNLSNTNICELPIGI 289 (459)
Q Consensus 221 ~~~L~~L~l~~~-~~~-----~~~~~~~~~l~~Lr~L~L~~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~lp~~i 289 (459)
-+.|+.|+++++ .+. .+.. .+..-..|+.|+|++| .+.. +-..+..=+.|++|+|++|.|. +.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig--~~Ga 115 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLT--PELL 115 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCC--HHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCC--HHHH
Confidence 355677777664 433 2222 2566789999999999 7763 2333444568999999999887 3344
Q ss_pred HHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccc----cchhhhhccccCceeEEEEeCh
Q 012641 290 KKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV----LLLEELESLKHLQEISVIILTL 353 (459)
Q Consensus 290 ~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~~L~l~~~~~ 353 (459)
..+.+. +..-+.|++|+++++....+ +. .+.+.|..=+.|+.|++..+..
T Consensus 116 ~ala~a-----L~~N~tL~~L~L~n~~~~~i---------g~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRS-----TLVTQSIVEFKADNQRQSVL---------GNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHH-----TTTTCCCSEEECCCCSSCCC---------CHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHH-----HhhCCceeEEECCCCcCcCc---------CHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 333333 33445799999976532000 21 2445666677899888875443
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=81.99 E-value=7.1 Score=36.22 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHH-HHHHHHhcCCCCCCCCcccchhhhhhhhcCC---CchhHHHHhhh
Q 012641 19 ELAETVADMCGGLPLALVTIGSAMASRRDPDNWR-YAIEELQRYPSGFEGMGTRVFPLLKFSYDRL---TSETHKTCFLY 94 (459)
Q Consensus 19 ~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~-~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~lk~cfl~ 94 (459)
+...+|++.|+|.|+++..++..+....+...+- ...+. +...+.-.+..+ +. ..+..+..
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~l~~~~~-~~~~~l~~ 290 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV--------------AKGLIMGELEELRRRSP-RYVDILRA 290 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH--------------HHHHHHHHHHHHHhCCh-hHHHHHHH
Confidence 4678899999999999999987654312222221 11111 111111112222 56 58899888
Q ss_pred hcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEee-hHHHHHH
Q 012641 95 CSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKM-HDILRDM 166 (459)
Q Consensus 95 ~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~-hdli~~l 166 (459)
+|. + .++...+.....+.. - .. + ......+++.|.+.+++... ...+++ |.++++.
T Consensus 291 la~---g-~~~~~~l~~~~~~~~-~-~~-~----~~~~~~~l~~L~~~gli~~~-----~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 291 IAL---G-YNRWSLIRDYLAVKG-T-KI-P----EPRLYALLENLKKMNWIVEE-----DNTYKIADPVVATV 347 (350)
T ss_dssp HHT---T-CCSHHHHHHHHHHTT-C-CC-C----HHHHHHHHHHHHHTTSEEEE-----TTEEEESSHHHHHH
T ss_pred HHh---C-CCCHHHHHHHHHHHh-C-CC-C----HHHHHHHHHHHHhCCCEEec-----CCEEEEecHHHHHH
Confidence 887 2 245455554443211 0 11 1 23356789999999999865 235665 5565543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 459 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 6e-07 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 48.7 bits (115), Expect = 6e-07
Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 12 NSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTR 71
+ ++ ++ G P L+ + + + +L+
Sbjct: 202 PVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL------VG 254
Query: 72 VFPLLKFSYDRLTSETHKTCF 92
V + +SY L + C
Sbjct: 255 VECITPYSYKSLAMAL-QRCV 274
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 459 | |||
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.67 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.61 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.54 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.53 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.52 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.52 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.52 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.5 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.42 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.4 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.35 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.34 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.33 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.33 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.31 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.3 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.29 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.28 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.19 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.19 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.06 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.05 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.01 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.94 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.91 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.64 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.2 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.74 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.65 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.56 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 97.48 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 97.09 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.53 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.72 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.13 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 93.3 |
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.5e-16 Score=146.50 Aligned_cols=194 Identities=22% Similarity=0.225 Sum_probs=133.2
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcC
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 278 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~ 278 (459)
....+.-.++ .++.+|+.+. +++++|++++|.+..+|...|..+++|++|+|++| .++.+|. ++.+++|++|+++
T Consensus 11 ~~~~v~C~~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 11 SHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLS 85 (266)
T ss_dssp TCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECC
T ss_pred CCeEEEccCC-CCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccc
Confidence 3444555556 6777765543 57888888888888888777888888888888888 8888875 5788888888888
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
+|++...|. . +.++++|+.|+++++.. .......+..+.+|+.|.+..+....+..
T Consensus 86 ~N~l~~~~~-----------~-~~~l~~L~~L~l~~~~~------------~~~~~~~~~~l~~l~~L~l~~n~l~~l~~ 141 (266)
T d1p9ag_ 86 HNQLQSLPL-----------L-GQTLPALTVLDVSFNRL------------TSLPLGALRGLGELQELYLKGNELKTLPP 141 (266)
T ss_dssp SSCCSSCCC-----------C-TTTCTTCCEEECCSSCC------------CCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ccccccccc-----------c-ccccccccccccccccc------------ceeeccccccccccccccccccccceecc
Confidence 888776543 2 77788888888888776 22334455667777777775332222211
Q ss_pred hhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccC
Q 012641 359 LKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDC 432 (459)
Q Consensus 359 l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c 432 (459)
........++.++++.+.++.+....+ ..+++|++|+|++|.++.+|. +..+++|++|+|++.
T Consensus 142 --~~~~~l~~l~~l~l~~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 142 --GLLTPTPKLEKLSLANNNLTELPAGLL---------NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp --TTTTTCTTCCEEECTTSCCSCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred --ccccccccchhcccccccccccCcccc---------ccccccceeecccCCCcccChhHCCCCCCCEEEecCC
Confidence 011112234555555555544421111 248899999999999999985 778999999999873
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=3.3e-16 Score=151.60 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=73.6
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
...+++.|.+.++ .++++ ..+..+++|++|++++|.+..+++ ++++++|++|++++| .+..++. ++.+++|++|
T Consensus 42 ~l~~l~~L~l~~~-~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~L~~L 115 (384)
T d2omza2 42 DLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGL 115 (384)
T ss_dssp HHTTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEE
T ss_pred HhCCCCEEECCCC-CCCCc-cccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccc-ccccccc-cccccccccc
Confidence 4467899999998 88888 677889999999999999888886 899999999999999 8888875 8899999999
Q ss_pred EcCCCCCcccCH
Q 012641 276 NLSNTNICELPI 287 (459)
Q Consensus 276 ~l~~~~l~~lp~ 287 (459)
+++++.+..++.
T Consensus 116 ~~~~~~~~~~~~ 127 (384)
T d2omza2 116 TLFNNQITDIDP 127 (384)
T ss_dssp ECCSSCCCCCGG
T ss_pred cccccccccccc
Confidence 999887776543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=7.4e-16 Score=136.56 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=120.3
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
+..++++.+.++ .++.+ ..+..+++|++|++++|.+..+++ ++.+++|++|++++| .++.+|. ++.+++|++|+
T Consensus 45 L~~L~~L~l~~~-~i~~l-~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hcCccEEECcCC-CCCCc-hhHhhCCCCCEEeCCCccccCccc--cccCccccccccccc-ccccccc-ccccccccccc
Confidence 456778888877 77777 456778888888888887777765 677888888888888 7877774 77788888888
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhh
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSL 356 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 356 (459)
+++|.+..++. +..+++|+.+++.+|... .+..+..+++|+.+++..+
T Consensus 119 l~~~~~~~~~~-------------l~~l~~l~~l~~~~n~l~--------------~~~~~~~l~~L~~l~l~~n----- 166 (210)
T d1h6ta2 119 LEHNGISDING-------------LVHLPQLESLYLGNNKIT--------------DITVLSRLTKLDTLSLEDN----- 166 (210)
T ss_dssp CTTSCCCCCGG-------------GGGCTTCCEEECCSSCCC--------------CCGGGGGCTTCSEEECCSS-----
T ss_pred ccccccccccc-------------cccccccccccccccccc--------------ccccccccccccccccccc-----
Confidence 88887766543 667778888888777652 2334556677776665322
Q ss_pred hhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeeccc
Q 012641 357 NKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKD 431 (459)
Q Consensus 357 ~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~ 431 (459)
.+..+. +...+++|++|++++|.++++|.+..+++|++|+|++
T Consensus 167 ---------------------~l~~i~-----------~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 167 ---------------------QISDIV-----------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp ---------------------CCCCCG-----------GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred ---------------------cccccc-----------cccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence 221110 0124789999999999999999999999999999975
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.61 E-value=6.2e-15 Score=138.25 Aligned_cols=228 Identities=14% Similarity=0.101 Sum_probs=146.1
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+-+.+.+++.+|..- .+.+++|.+++| .++.+++ .+..+++|++|++++|.+..+++..|..++.|++|++++| .
T Consensus 14 ~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~ 90 (305)
T d1xkua_ 14 VVQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-Q 90 (305)
T ss_dssp EEECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCCCccCCCC-CCCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-c
Confidence 4455666777777533 367999999999 9999974 5788999999999999888887777999999999999999 9
Q ss_pred cccccccccCCCCCCEEEcCCCCCcccCHHHHHh----------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCC
Q 012641 259 LSKLHVGEGELIDLQYLNLSNTNICELPIGIKKN----------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNY 322 (459)
Q Consensus 259 i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L----------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 322 (459)
++.+|..+ ..+|+.|++..|.+..++...... ....+.. +..+++|+.+++.+|....
T Consensus 91 l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~-~~~l~~L~~l~l~~n~l~~--- 164 (305)
T d1xkua_ 91 LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITT--- 164 (305)
T ss_dssp CSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCS---
T ss_pred cCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccc-cccccccCccccccCCccc---
Confidence 99998754 458999999999998887654332 1222223 6667777777777766532
Q ss_pred CCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCc
Q 012641 323 GSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNL 402 (459)
Q Consensus 323 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L 402 (459)
.+.. -+++|+.|++..+..... ..........++.|.++.+.+..+. +.++ ..+++|
T Consensus 165 ----------l~~~--~~~~L~~L~l~~n~~~~~--~~~~~~~~~~l~~L~~s~n~l~~~~-------~~~~--~~l~~L 221 (305)
T d1xkua_ 165 ----------IPQG--LPPSLTELHLDGNKITKV--DAASLKGLNNLAKLGLSFNSISAVD-------NGSL--ANTPHL 221 (305)
T ss_dssp ----------CCSS--CCTTCSEEECTTSCCCEE--CTGGGTTCTTCCEEECCSSCCCEEC-------TTTG--GGSTTC
T ss_pred ----------cCcc--cCCccCEEECCCCcCCCC--ChhHhhccccccccccccccccccc-------cccc--cccccc
Confidence 1111 134555555532211111 0000111112333333333333221 1121 236777
Q ss_pred cEEEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 403 QDLSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 403 ~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
++|+|++|.++.+|. +..+++|++|++++ +++++|+.
T Consensus 222 ~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~-N~i~~i~~ 259 (305)
T d1xkua_ 222 RELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGS 259 (305)
T ss_dssp CEEECCSSCCSSCCTTTTTCSSCCEEECCS-SCCCCCCT
T ss_pred eeeecccccccccccccccccCCCEEECCC-CccCccCh
Confidence 777777777777764 77777777777777 45777654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=3.6e-15 Score=130.85 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=41.2
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
..++.|.+.++ .+.++ ..+..+++|++|++++|.+..+++ ++++++|++|++++| .+..+|. ++.+++|++|++
T Consensus 40 ~~l~~L~l~~~-~i~~l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEC
T ss_pred cCCCEEECCCC-CCCCc-cccccCCCcCcCccccccccCccc--ccCCccccccccccc-ccccccc-cccccccccccc
Confidence 44555555555 55544 344445555555555555444443 455555555555555 4444443 455555555555
Q ss_pred CCCCCcc
Q 012641 278 SNTNICE 284 (459)
Q Consensus 278 ~~~~l~~ 284 (459)
++|.+..
T Consensus 114 ~~~~~~~ 120 (199)
T d2omxa2 114 FNNQITD 120 (199)
T ss_dssp CSSCCCC
T ss_pred ccccccc
Confidence 5554443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=6.5e-15 Score=132.00 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=116.8
Q ss_pred cccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCE
Q 012641 195 ASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQY 274 (459)
Q Consensus 195 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~ 274 (459)
..+.+++.+.+.++ .++++ +.+..+++|++|++++|.+..+++ +..+.+|+++++++| .++.++. ++.+++|++
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n-~~~~i~~-l~~l~~L~~ 111 (227)
T d1h6ua2 38 ADLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVSA-IAGLQSIKT 111 (227)
T ss_dssp HHHHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCGG-GTTCTTCCE
T ss_pred HHcCCcCEEECCCC-CCCcc-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccc-ccccccc-ccccccccc
Confidence 34567888888888 78887 667788888888888887777765 788888888888888 7777764 778888888
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
++++++....++. +.....++.+.+..+... ....+..+++|+.|.+..+...
T Consensus 112 l~l~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~L~~L~l~~n~~~ 164 (227)
T d1h6ua2 112 LDLTSTQITDVTP-------------LAGLSNLQVLYLDLNQIT--------------NISPLAGLTNLQYLSIGNAQVS 164 (227)
T ss_dssp EECTTSCCCCCGG-------------GTTCTTCCEEECCSSCCC--------------CCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccccch-------------hccccchhhhhchhhhhc--------------hhhhhccccccccccccccccc
Confidence 8888887665543 556677777777666542 2234556677777766433222
Q ss_pred hhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecc
Q 012641 355 SLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAK 430 (459)
Q Consensus 355 ~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~ 430 (459)
....+.. ...|+.|+++.+.++++.. ...+++|++|+|++|+++.+++++.+++|++|+++
T Consensus 165 ~~~~l~~----l~~L~~L~Ls~n~l~~l~~-----------l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 165 DLTPLAN----LSKLTTLKADDNKISDISP-----------LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225 (227)
T ss_dssp CCGGGTT----CTTCCEEECCSSCCCCCGG-----------GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred cchhhcc----cccceecccCCCccCCChh-----------hcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence 1111110 1123444443333332210 12245555666655555555555555555555554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=5e-15 Score=129.95 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=112.8
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPA 298 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~ 298 (459)
..++++++|.+++|.+..++. ++.+++|++|++++| .++.++. ++.+++|++|++++|.+..+|.
T Consensus 37 ~~l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~----------- 101 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP----------- 101 (199)
T ss_dssp HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-----------
T ss_pred HHhcCCCEEECCCCCCCCccc--cccCCCcCcCccccc-cccCccc-ccCCcccccccccccccccccc-----------
Confidence 456889999999998888865 899999999999999 9998876 9999999999999999888764
Q ss_pred CcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC
Q 012641 299 GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE 378 (459)
Q Consensus 299 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~ 378 (459)
+.++++|+.|++++|... ....+.++++|+.|+++.+....+..+
T Consensus 102 --l~~l~~L~~L~l~~~~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~l------------------- 146 (199)
T d2omxa2 102 --LANLTNLTGLTLFNNQIT--------------DIDPLKNLTNLNRLELSSNTISDISAL------------------- 146 (199)
T ss_dssp --GTTCTTCSEEECCSSCCC--------------CCGGGTTCTTCSEEECCSSCCCCCGGG-------------------
T ss_pred --cccccccccccccccccc--------------cccccchhhhhHHhhhhhhhhcccccc-------------------
Confidence 889999999999988652 234577888898888753322111110
Q ss_pred CCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCcchhhhc
Q 012641 379 LSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 379 l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~ 439 (459)
..+++|+.|++.+|.++.++.++.+++|++|+++++ ++++++
T Consensus 147 ------------------~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N-~i~~i~ 188 (199)
T d2omxa2 147 ------------------SGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSN-KVSDIS 188 (199)
T ss_dssp ------------------TTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG
T ss_pred ------------------cccccccccccccccccCCccccCCCCCCEEECCCC-CCCCCc
Confidence 125566666666666666666666666666666664 455544
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=1.4e-15 Score=136.56 Aligned_cols=191 Identities=17% Similarity=0.213 Sum_probs=140.3
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 280 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~ 280 (459)
.++.+... .+.++ ....++.+|+.|.+.+|.+..++. ++.|++|++|++++| .+..++. +..+++|+++++++|
T Consensus 22 ~~~~l~~~-~~~d~-~~~~~l~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n 95 (227)
T d1h6ua2 22 IKIAAGKS-NVTDT-VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN 95 (227)
T ss_dssp HHHHTTCS-STTSE-ECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC
T ss_pred HHHHhCCC-CcCCc-CCHHHcCCcCEEECCCCCCCcchh--HhcCCCCcEeecCCc-eeecccc-ccccccccccccccc
Confidence 33444444 44444 444667899999999999988864 899999999999999 8988865 899999999999999
Q ss_pred CCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhh
Q 012641 281 NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLK 360 (459)
Q Consensus 281 ~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~ 360 (459)
.++.++. +.++++|+.+.+.++... ....+.....++.+.+..........+
T Consensus 96 ~~~~i~~-------------l~~l~~L~~l~l~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~~- 147 (227)
T d1h6ua2 96 PLKNVSA-------------IAGLQSIKTLDLTSTQIT--------------DVTPLAGLSNLQVLYLDLNQITNISPL- 147 (227)
T ss_dssp CCSCCGG-------------GTTCTTCCEEECTTSCCC--------------CCGGGTTCTTCCEEECCSSCCCCCGGG-
T ss_pred ccccccc-------------cccccccccccccccccc--------------ccchhccccchhhhhchhhhhchhhhh-
Confidence 9888764 889999999999888652 233455667777776643322222111
Q ss_pred cchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 361 SSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 361 ~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.....++.|.+..+.+... .+...+++|++|++++|.++++++++.+++|++|++++| ++++++.
T Consensus 148 ---~~~~~L~~L~l~~n~~~~~-----------~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~ 212 (227)
T d1h6ua2 148 ---AGLTNLQYLSIGNAQVSDL-----------TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVSP 212 (227)
T ss_dssp ---GGCTTCCEEECCSSCCCCC-----------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCGG
T ss_pred ---ccccccccccccccccccc-----------hhhcccccceecccCCCccCCChhhcCCCCCCEEECcCC-cCCCCcc
Confidence 1122355555544443322 112458999999999999999999999999999999997 6888875
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.54 E-value=1.6e-15 Score=142.95 Aligned_cols=40 Identities=30% Similarity=0.217 Sum_probs=24.7
Q ss_pred ccCccEEEEecCCCC-CCcc-cccCCCcceeecccCcchh-hhc
Q 012641 399 SQNLQDLSIINCSIK-DLTC-ILYIPRLRFLFAKDCPSLE-EII 439 (459)
Q Consensus 399 l~~L~~L~L~~~~l~-~lp~-l~~l~~L~~L~l~~c~~l~-~i~ 439 (459)
+++|+.|+|++|+++ .+|. ++++++|++|+|++ ++++ .+|
T Consensus 243 ~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~-N~l~g~iP 285 (313)
T d1ogqa_ 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF-NNLCGEIP 285 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS-SEEEEECC
T ss_pred ccccccccCccCeecccCChHHhCCCCCCEEECcC-CcccccCC
Confidence 566777777777554 5553 66677777777766 3444 344
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.53 E-value=9.3e-15 Score=137.04 Aligned_cols=199 Identities=18% Similarity=0.216 Sum_probs=131.8
Q ss_pred CccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCCCCCcccCHH
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTNICELPIG 288 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~l~~lp~~ 288 (459)
.++++|+.+. +++++|++++|.+..+|+..|.++++|++|++++| .+..+ |..+..+++|++|++++|+++.+|..
T Consensus 21 ~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~ 97 (305)
T d1xkua_ 21 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEK 97 (305)
T ss_dssp CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEecccCCccCcCccc
Confidence 5778876553 68999999999999999877999999999999999 88888 66799999999999999999988753
Q ss_pred HHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCC--------------CCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 289 IKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYG--------------SSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 289 i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
. ...++.|.+..+........ .............+..+++|+.+.+..+...
T Consensus 98 ~--------------~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~ 163 (305)
T d1xkua_ 98 M--------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163 (305)
T ss_dssp C--------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred h--------------hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence 2 23455555555444321000 0000002223445666677777666433222
Q ss_pred hhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCc--ccccCCCcceeecccC
Q 012641 355 SLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLT--CILYIPRLRFLFAKDC 432 (459)
Q Consensus 355 ~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp--~l~~l~~L~~L~l~~c 432 (459)
. ++. ....+++.|+++.+...... +..+ ..++.+++|++++|.+..++ ++..+++|++|+++++
T Consensus 164 ~---l~~--~~~~~L~~L~l~~n~~~~~~-------~~~~--~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N 229 (305)
T d1xkua_ 164 T---IPQ--GLPPSLTELHLDGNKITKVD-------AASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229 (305)
T ss_dssp S---CCS--SCCTTCSEEECTTSCCCEEC-------TGGG--TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred c---cCc--ccCCccCEEECCCCcCCCCC-------hhHh--hccccccccccccccccccccccccccccceeeecccc
Confidence 1 111 11233455554433322211 1111 34688999999999888876 3788999999999996
Q ss_pred cchhhhcc
Q 012641 433 PSLEEIIA 440 (459)
Q Consensus 433 ~~l~~i~~ 440 (459)
+++++|.
T Consensus 230 -~L~~lp~ 236 (305)
T d1xkua_ 230 -KLVKVPG 236 (305)
T ss_dssp -CCSSCCT
T ss_pred -ccccccc
Confidence 7888865
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.52 E-value=3.5e-14 Score=125.52 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=121.5
Q ss_pred CCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCC
Q 012641 220 CCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAG 299 (459)
Q Consensus 220 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~ 299 (459)
++..|+.|++++|.+..++. +..+++|++|++++| .++.+|. ++.+++|++|++++|.++.+|.
T Consensus 44 ~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~------------ 107 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS------------ 107 (210)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG------------
T ss_pred HhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCc-cccCccc-cccCcccccccccccccccccc------------
Confidence 46778999999998888875 889999999999999 9999875 7899999999999999988764
Q ss_pred cCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCC
Q 012641 300 MLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPEL 379 (459)
Q Consensus 300 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l 379 (459)
+.++++|+.|++.+|... .+..+.++++|+.+.+..+ .+
T Consensus 108 -l~~l~~L~~L~l~~~~~~--------------~~~~l~~l~~l~~l~~~~n--------------------------~l 146 (210)
T d1h6ta2 108 -LKDLKKLKSLSLEHNGIS--------------DINGLVHLPQLESLYLGNN--------------------------KI 146 (210)
T ss_dssp -GTTCTTCCEEECTTSCCC--------------CCGGGGGCTTCCEEECCSS--------------------------CC
T ss_pred -cccccccccccccccccc--------------ccccccccccccccccccc--------------------------cc
Confidence 888999999999988752 2446777777777766422 11
Q ss_pred CCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 380 SSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 380 ~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
..+ .+ ...+++|+.+++++|.+..++.++.+++|+.|+++++ .+++++.
T Consensus 147 ~~~---------~~--~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N-~i~~l~~ 195 (210)
T d1h6ta2 147 TDI---------TV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLRA 195 (210)
T ss_dssp CCC---------GG--GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGG
T ss_pred ccc---------cc--ccccccccccccccccccccccccCCCCCCEEECCCC-CCCCChh
Confidence 111 00 1247899999999998899988999999999999985 6877754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.9e-14 Score=132.18 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=130.4
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCc
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~ 300 (459)
..+...+.+++.+..+|+. +. +++++|+|++| .++.+| ..+..+++|++|++++|.++.+|.
T Consensus 10 ~~~~~v~C~~~~L~~iP~~-lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~------------- 72 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTALPPD-LP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV------------- 72 (266)
T ss_dssp TTCCEEECTTSCCSSCCSC-CC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------------
T ss_pred CCCeEEEccCCCCCeeCcC-cC--cCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc-------------
Confidence 3445557777788899876 33 68999999999 999997 568999999999999999988764
Q ss_pred CCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCC
Q 012641 301 LSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELS 380 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~ 380 (459)
++.+++|++|++++|.+.. .+..+..+++|+.|++..+....+.. ........++.|.+..+.+.
T Consensus 73 ~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~l~~L~l~~n~l~ 137 (266)
T d1p9ag_ 73 DGTLPVLGTLDLSHNQLQS-------------LPLLGQTLPALTVLDVSFNRLTSLPL--GALRGLGELQELYLKGNELK 137 (266)
T ss_dssp CSCCTTCCEEECCSSCCSS-------------CCCCTTTCTTCCEEECCSSCCCCCCS--STTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccccc-------------cccccccccccccccccccccceeec--cccccccccccccccccccc
Confidence 6789999999999998632 34567788999999986443322211 11112223455555555554
Q ss_pred CccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCcchhhhcc
Q 012641 381 SLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 381 ~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.++.. +. ..+++|+.|++++|+++.++. ++.+++|++|+|++ ++++++|.
T Consensus 138 ~l~~~-------~~--~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~L~~lp~ 189 (266)
T d1p9ag_ 138 TLPPG-------LL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPK 189 (266)
T ss_dssp CCCTT-------TT--TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCT
T ss_pred eeccc-------cc--cccccchhcccccccccccCccccccccccceeeccc-CCCcccCh
Confidence 44211 11 247899999999998888875 78899999999999 56998887
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.52 E-value=1.5e-14 Score=136.19 Aligned_cols=210 Identities=12% Similarity=0.059 Sum_probs=120.5
Q ss_pred cceEEEeecCCCcc---ccCCCCCCCCcceeeeeec-cccc-ccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCC
Q 012641 199 EAVRVSLWRSPSID---SLSPTPPCCPRLLTLLVRY-TMIK-EFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDL 272 (459)
Q Consensus 199 ~~r~l~l~~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L 272 (459)
+++.|++.++ .+. .+|+.+.++++|++|++++ |.+. .+|.+ |+++++|++|+|++| .+..+ |..+..+.+|
T Consensus 51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L 127 (313)
T d1ogqa_ 51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccc-cccccccccccchhhh
Confidence 5777777776 454 3667777788888888876 4554 67766 778888888888888 66655 4556777788
Q ss_pred CEEEcCCCCCc-ccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccC-ceeEEEE
Q 012641 273 QYLNLSNTNIC-ELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHL-QEISVII 350 (459)
Q Consensus 273 ~~L~l~~~~l~-~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~~L~l~~ 350 (459)
+++++++|.+. .+|.+ ++++++|+++++++|.. ....+..+..+.++ +.+.+..
T Consensus 128 ~~l~l~~N~~~~~~p~~------------l~~l~~L~~l~l~~n~l------------~~~ip~~~~~l~~l~~~l~~~~ 183 (313)
T d1ogqa_ 128 VTLDFSYNALSGTLPPS------------ISSLPNLVGITFDGNRI------------SGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp CEEECCSSEEESCCCGG------------GGGCTTCCEEECCSSCC------------EEECCGGGGCCCTTCCEEECCS
T ss_pred cccccccccccccCchh------------hccCcccceeecccccc------------cccccccccccccccccccccc
Confidence 88888877543 44443 55556666666655554 22233333333332 2222111
Q ss_pred e---------------------ChhhhhhhhcchhHHhhhhhhhcc----------CCCCCCccccCccc------cCCc
Q 012641 351 L---------------------TLDSLNKLKSSSKLQSCVRRQVMG----------LPELSSLIDISSSS------LTTM 393 (459)
Q Consensus 351 ~---------------------~~~~~~~l~~~~~l~~~L~~L~l~----------~~~l~~l~~~~l~~------~~~~ 393 (459)
+ .......++........++.+.+. ....+.+..+++.. .|.+
T Consensus 184 n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~ 263 (313)
T d1ogqa_ 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp SEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChH
Confidence 0 000000011111111122333221 11223333333332 1333
Q ss_pred cCcccccCccEEEEecCCCC-CCcccccCCCcceeecccCcchhh
Q 012641 394 MKGHFSQNLQDLSIINCSIK-DLTCILYIPRLRFLFAKDCPSLEE 437 (459)
Q Consensus 394 i~~~~l~~L~~L~L~~~~l~-~lp~l~~l~~L~~L~l~~c~~l~~ 437 (459)
+ ..+++|++|+|++|+++ .+|.++.+++|+.+++++.+.+..
T Consensus 264 l--~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 264 L--TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp G--GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred H--hCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccC
Confidence 3 35899999999999776 788888999999999998765543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9.1e-14 Score=128.81 Aligned_cols=217 Identities=16% Similarity=0.180 Sum_probs=155.6
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
..+.+.+.++..+|... ...++.|.+++| .++.+|+ .+.++++|+.|++++|.+..++...+..+..++.++...+.
T Consensus 14 ~~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCCCCCCccCCCC-CCCCCEEECcCC-cCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 34556677777777533 257899999999 9999874 57889999999999999888888878889999998876554
Q ss_pred Ccccc-cccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh
Q 012641 258 KLSKL-HVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE 336 (459)
Q Consensus 258 ~i~~l-P~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.+..+ |..+..+++|++|++++|.+..++.. .+..+.+|+.+++.+|.+. ......
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~-----------~~~~~~~L~~l~l~~N~l~------------~i~~~~ 148 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-----------LFRGLAALQYLYLQDNALQ------------ALPDDT 148 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-----------TTTTCTTCCEEECCSSCCC------------CCCTTT
T ss_pred ccccccchhhcccccCCEEecCCccccccccc-----------ccchhcccchhhhcccccc------------ccChhH
Confidence 77777 56788999999999999988776532 2777888999999888763 223445
Q ss_pred hhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCc
Q 012641 337 LESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLT 416 (459)
Q Consensus 337 l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp 416 (459)
+..+++|+.|++..+....+.. ........|+.+.+..+.+..+. +.++ ..+++|++|++++|.+..++
T Consensus 149 f~~~~~L~~L~l~~N~l~~l~~--~~f~~l~~L~~l~l~~N~l~~i~-------~~~f--~~l~~L~~L~l~~N~i~~~~ 217 (284)
T d1ozna_ 149 FRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVH-------PHAF--RDLGRLMTLYLFANNLSALP 217 (284)
T ss_dssp TTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEEC-------TTTT--TTCTTCCEEECCSSCCSCCC
T ss_pred hccccchhhcccccCcccccch--hhhccccccchhhhhhccccccC-------hhHh--hhhhhccccccccccccccc
Confidence 6778888888876543332211 01111123444444444443332 2222 34789999999999888887
Q ss_pred c--cccCCCcceeeccc
Q 012641 417 C--ILYIPRLRFLFAKD 431 (459)
Q Consensus 417 ~--l~~l~~L~~L~l~~ 431 (459)
. ++.+++|++|++++
T Consensus 218 ~~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 218 TEALAPLRALQYLRLND 234 (284)
T ss_dssp HHHHTTCTTCCEEECCS
T ss_pred ccccccccccCEEEecC
Confidence 4 78899999999987
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=4.3e-13 Score=129.23 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=28.7
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCccc
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICEL 285 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~l 285 (459)
..+++++.+.+++|.+..+++ +..+.+|+.|++++| .++.+| .+..+++|++|++++|.+..+
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~ 256 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQISNL 256 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred ccccccceeeccCCccCCCCc--ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCccCCC
Confidence 334444444444444444433 334444555555544 444443 244444455555554444443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.6e-13 Score=124.64 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=141.5
Q ss_pred EeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcCCC-C
Q 012641 204 SLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNT-N 281 (459)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~-~ 281 (459)
...+. .++.+|..+. +.+++|++++|.+..+|+..|.+++.|++|+++++ .+..++ ..+..+..++.+....+ .
T Consensus 17 ~c~~~-~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 17 SCPQQ-GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp ECCSS-CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EcCCC-CCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccc
Confidence 34444 6777765443 57899999999999999888999999999999999 888775 44567888898887654 6
Q ss_pred CcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhc
Q 012641 282 ICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKS 361 (459)
Q Consensus 282 l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~ 361 (459)
+..++. ..+.++++|++|++.+|.. .......+..+.+|+.+++..+....+.. .
T Consensus 93 ~~~l~~-----------~~~~~l~~L~~L~l~~n~~------------~~~~~~~~~~~~~L~~l~l~~N~l~~i~~--~ 147 (284)
T d1ozna_ 93 LRSVDP-----------ATFHGLGRLHTLHLDRCGL------------QELGPGLFRGLAALQYLYLQDNALQALPD--D 147 (284)
T ss_dssp CCCCCT-----------TTTTTCTTCCEEECTTSCC------------CCCCTTTTTTCTTCCEEECCSSCCCCCCT--T
T ss_pred cccccc-----------hhhcccccCCEEecCCccc------------ccccccccchhcccchhhhccccccccCh--h
Confidence 666643 2389999999999999886 33345566778889999886544333211 1
Q ss_pred chhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCcchhhhc
Q 012641 362 SSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 362 ~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~~l~~i~ 439 (459)
.......++.|+++.+.++.+....+ ..+++|+.+++.+|++..+++ +..+++|++|++++ +++..++
T Consensus 148 ~f~~~~~L~~L~l~~N~l~~l~~~~f---------~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~ 217 (284)
T d1ozna_ 148 TFRDLGNLTHLFLHGNRISSVPERAF---------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALP 217 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCC
T ss_pred HhccccchhhcccccCcccccchhhh---------ccccccchhhhhhccccccChhHhhhhhhcccccccc-ccccccc
Confidence 11222346667666666654432111 237899999999997777653 88999999999998 6677666
Q ss_pred c
Q 012641 440 A 440 (459)
Q Consensus 440 ~ 440 (459)
.
T Consensus 218 ~ 218 (284)
T d1ozna_ 218 T 218 (284)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.40 E-value=2.1e-14 Score=132.33 Aligned_cols=85 Identities=11% Similarity=0.096 Sum_probs=72.0
Q ss_pred CcccccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhh
Q 012641 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSY 80 (459)
Q Consensus 1 LF~~~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy 80 (459)
||++++|... .++..++++++||++|+|+||||+++|+.|+. ++.+.|.+..+.+++.... ++..++.+||
T Consensus 193 Lf~~~~~~~~--~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~-k~~~~~~~~~~~L~~~~~~------~v~~il~~sY 263 (277)
T d2a5yb3 193 FLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KTFEKMAQLNNKLESRGLV------GVECITPYSY 263 (277)
T ss_dssp HHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS-SSHHHHHHHHHHHHHHCSS------TTCCCSSSSS
T ss_pred HHHHHhCCcc--CchhhHHHHHHHHHHhCCCHHHHHHHHHHhcc-CCHHHHHHHHHHHhcCcHH------HHHHHHHHHH
Confidence 5778887664 45667999999999999999999999999987 7889999988888764433 7899999999
Q ss_pred cCCCchhHHHHhhhh
Q 012641 81 DRLTSETHKTCFLYC 95 (459)
Q Consensus 81 ~~L~~~~lk~cfl~~ 95 (459)
++||+ ++|+||-++
T Consensus 264 ~~L~~-~lk~c~~~l 277 (277)
T d2a5yb3 264 KSLAM-ALQRCVEVL 277 (277)
T ss_dssp SSHHH-HHHHHHHTS
T ss_pred hcccH-HHHHHHHhC
Confidence 99999 799999763
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=1.2e-12 Score=104.97 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=75.9
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 280 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~ 280 (459)
|.|+++++ .+..+ +.+..+++|+.|++++|.+..+|+. ++.+++|++|++++| .++.+|. ++.+++|++|++++|
T Consensus 1 R~L~Ls~n-~l~~l-~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHK-DLTVL-CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTS-CCSSC-CCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CCCCC-cccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccc-cccccCc-cccccccCeEECCCC
Confidence 45677777 77777 4577778888888888877777766 777888888888888 7877764 778888888888888
Q ss_pred CCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 281 NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 281 ~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.+..+|. + .. +.++++|++|++++|.+
T Consensus 76 ~i~~~~~--------~-~~-l~~~~~L~~L~l~~N~i 102 (124)
T d1dcea3 76 RLQQSAA--------I-QP-LVSCPRLVLLNLQGNSL 102 (124)
T ss_dssp CCCSSST--------T-GG-GGGCTTCCEEECTTSGG
T ss_pred ccCCCCC--------c-hh-hcCCCCCCEEECCCCcC
Confidence 7776653 1 11 66777888888887765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.34 E-value=2e-12 Score=122.75 Aligned_cols=126 Identities=17% Similarity=0.053 Sum_probs=90.2
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
+-..+.+++.+|+. ..+++.|.+++| .++++|.. ..+|+.|.+.+|.+..++. + .+.|++|++++| .+.
T Consensus 43 LdLs~~~L~~lp~~--~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n-~l~ 111 (353)
T d1jl5a_ 43 LELNNLGLSSLPEL--PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN-QLE 111 (353)
T ss_dssp EECTTSCCSCCCSC--CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS-CCS
T ss_pred EEeCCCCCCCCCCC--CCCCCEEECCCC-CCcccccc---hhhhhhhhhhhcccchhhh--h--cccccccccccc-ccc
Confidence 33444556666643 368999999999 89888543 4678999999887776653 2 246999999999 899
Q ss_pred cccccccCCCCCCEEEcCCCCCcccCHHHHHh--------hhhCCCCcCCCCCCCCEeeecCCCCCC
Q 012641 261 KLHVGEGELIDLQYLNLSNTNICELPIGIKKN--------LKAIPAGMLSSLLSLRVFSWVPTRYAG 319 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L--------l~~lp~~~i~~L~~L~~L~l~~~~~~~ 319 (459)
.+|. ++.+++|++|+++++.+...|.....+ ...-+.. +..+..++.|++..+....
T Consensus 112 ~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 112 KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS
T ss_pred cccc-hhhhccceeeccccccccccccccccccchhhcccccccccc-ccccccceecccccccccc
Confidence 9986 788999999999999888776654444 1111223 6667777777777765544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=9.5e-13 Score=105.61 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=87.8
Q ss_pred eeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCC
Q 012641 225 LTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSL 304 (459)
Q Consensus 225 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L 304 (459)
|+|++++|.+..++. ++.+.+|++|++++| .++.+|..++.+++|++|++++|.++.+|. +.++
T Consensus 1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-------------~~~l 64 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVDG-------------VANL 64 (124)
T ss_dssp SEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCGG-------------GTTC
T ss_pred CEEEcCCCCCCCCcc--cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccCc-------------cccc
Confidence 689999999988875 899999999999999 999999999999999999999999998864 8899
Q ss_pred CCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 305 LSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 305 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
++|++|++++|.+.. ...+..++.+++|+.|+++.+
T Consensus 65 ~~L~~L~l~~N~i~~-----------~~~~~~l~~~~~L~~L~l~~N 100 (124)
T d1dcea3 65 PRLQELLLCNNRLQQ-----------SAAIQPLVSCPRLVLLNLQGN 100 (124)
T ss_dssp SSCCEEECCSSCCCS-----------SSTTGGGGGCTTCCEEECTTS
T ss_pred cccCeEECCCCccCC-----------CCCchhhcCCCCCCEEECCCC
Confidence 999999999998742 223467888999999998544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=6.9e-13 Score=111.79 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=22.8
Q ss_pred ccCccEEEEecCCCCCCcc-----cccCCCcceeeccc
Q 012641 399 SQNLQDLSIINCSIKDLTC-----ILYIPRLRFLFAKD 431 (459)
Q Consensus 399 l~~L~~L~L~~~~l~~lp~-----l~~l~~L~~L~l~~ 431 (459)
+++|++|++++|.+..+|. +..+|+|++|+-..
T Consensus 111 l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~ 148 (162)
T d1a9na_ 111 LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148 (162)
T ss_dssp CTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCC
Confidence 6677777777776666552 56678888877554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=6.2e-12 Score=113.17 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=26.2
Q ss_pred cceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-cc-ccccCCCCCCEEEcC
Q 012641 223 RLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LH-VGEGELIDLQYLNLS 278 (459)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP-~~i~~L~~L~~L~l~ 278 (459)
++++|++++|.+..+|...|.++++|++|++++| .+.. +| ..+..+.+++++.+.
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESC-TTCCEECSSSEESCTTCCEEEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccc-cccceeecccccccccccccccc
Confidence 4555555555555555444455555555555555 3332 21 234445555555544
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8.9e-12 Score=112.10 Aligned_cols=222 Identities=14% Similarity=0.101 Sum_probs=134.6
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+.+.+..+..+|... ..+++.|.+.++ .+..+++ .+.++++|++|++++|.+. .++...|.++..++.+++..+.
T Consensus 12 ~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 12 VFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp EEEEESCSCSSCCSCS-CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred EEEEeCCCCCCcCCCC-CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 4555666677777533 257999999999 8999874 5788999999999999654 4666668899999999987643
Q ss_pred Cccccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh
Q 012641 258 KLSKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE 336 (459)
Q Consensus 258 ~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.+..++ ..+..+++|++|++++|.+...|.. .. +..++.+..+...++... ......
T Consensus 90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~---------~~-~~~l~~l~~~~~~n~~l~------------~i~~~~ 147 (242)
T d1xwdc1 90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDV---------HK-IHSLQKVLLDIQDNINIH------------TIERNS 147 (242)
T ss_dssp TCCEECTTSEECCTTCCEEEEESCCCCSCCCC---------TT-TCBSSCEEEEEESCTTCC------------EECTTS
T ss_pred cccccccccccccccccccccchhhhcccccc---------cc-cccccccccccccccccc------------cccccc
Confidence 676664 5679999999999999998876530 01 334444444444444431 112223
Q ss_pred hhccc-cCceeEEEEeChhhhhhhhcchhHHhhhhh-hhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCC
Q 012641 337 LESLK-HLQEISVIILTLDSLNKLKSSSKLQSCVRR-QVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKD 414 (459)
Q Consensus 337 l~~L~-~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~-L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~ 414 (459)
+..+. .++.|++..+....+ .........+.. +.++.+.++.++...+ ..+++|++|+|++|+++.
T Consensus 148 ~~~~~~~l~~L~l~~n~l~~i---~~~~~~~~~l~~~~~l~~n~l~~l~~~~f---------~~l~~L~~L~Ls~N~l~~ 215 (242)
T d1xwdc1 148 FVGLSFESVILWLNKNGIQEI---HNCAFNGTQLDELNLSDNNNLEELPNDVF---------HGASGPVILDISRTRIHS 215 (242)
T ss_dssp STTSBSSCEEEECCSSCCCEE---CTTTTTTCCEEEEECTTCTTCCCCCTTTT---------TTSCCCSEEECTTSCCCC
T ss_pred cccccccceeeeccccccccc---ccccccchhhhccccccccccccccHHHh---------cCCCCCCEEECCCCcCCc
Confidence 33332 455555533222211 111100011111 1223344444321111 237899999999998888
Q ss_pred Ccc--cccCCCcceeecccCcchhhhcc
Q 012641 415 LTC--ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 415 lp~--l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
+|. +..+++|++|++ .+++.+|.
T Consensus 216 l~~~~~~~l~~L~~l~~---~~l~~lp~ 240 (242)
T d1xwdc1 216 LPSYGLENLKKLRARST---YNLKKLPT 240 (242)
T ss_dssp CCSSSCTTCCEEESSSE---ESSSCSCC
T ss_pred cCHHHHcCCcccccCcC---CCCCcCCC
Confidence 875 455555555554 44555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.4e-12 Score=109.84 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=97.2
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccc-cCCCCCCE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQY 274 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i-~~L~~L~~ 274 (459)
....+|.|.+++| .+..++.....+++|++|++++|.+..++. +..+++|++|++++| .++.+|..+ ..+++|++
T Consensus 16 n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 16 NAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 91 (162)
T ss_dssp CTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CcCcCcEEECCCC-CCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccc-cccCCCcccccccccccc
Confidence 3356888999988 888885545678889999999988888754 788889999999999 888887654 56889999
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
|++++|.+..++. +. . +..+++|++|++.+|.+... .......+..+++|+.|+-.
T Consensus 92 L~L~~N~i~~~~~--------l~-~-l~~l~~L~~L~l~~N~i~~~---------~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 92 LILTNNSLVELGD--------LD-P-LASLKSLTYLCILRNPVTNK---------KHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp EECCSCCCCCGGG--------GG-G-GGGCTTCCEEECCSSGGGGS---------TTHHHHHHHHCTTCSEETTE
T ss_pred ceecccccccccc--------cc-c-cccccccchhhcCCCccccc---------cchHHHHHHHCCCcCeeCCC
Confidence 9999988887654 11 1 67788899999988876320 11123356778888887654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.28 E-value=6.2e-12 Score=109.09 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=38.4
Q ss_pred Ccceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCC
Q 012641 222 PRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAG 299 (459)
Q Consensus 222 ~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~ 299 (459)
+++++|++++|.+. .++...|..+++|+.|++++| .+..+ +..+..+.+|++|++++|+++.+|. +
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~-----------~ 96 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISN-----------K 96 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECS-----------S
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeeccccccccCH-----------H
Confidence 34445555555443 233333444555555555555 44433 2334444555555555555444332 1
Q ss_pred cCCCCCCCCEeeecCCCC
Q 012641 300 MLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 300 ~i~~L~~L~~L~l~~~~~ 317 (459)
++.++++|++|++++|.+
T Consensus 97 ~F~~l~~L~~L~L~~N~l 114 (192)
T d1w8aa_ 97 MFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp SSTTCTTCCEEECCSSCC
T ss_pred HHhCCCcccccccCCccc
Confidence 144455555555555444
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.19 E-value=3.4e-11 Score=104.29 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=105.0
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccc-cC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDS-LS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+.+.+.+++.+|... ..++++|.+++| .+.. ++ ..+..+++|+.|++++|.+..++...+..++.|++|+|++|
T Consensus 12 ~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N- 88 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN- 88 (192)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred EEEEeCCCcCccCCCC-CCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-
Confidence 3556677788887543 268999999999 8865 43 45578999999999999999888888999999999999999
Q ss_pred Ccccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 258 KLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 258 ~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.++.+|. .+..+++|++|+|++|.|+.+|.+ ++..+++|++|++++|..
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~-----------~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-----------SFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTT-----------SSTTCTTCCEEECTTCCB
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHH-----------HhcCCccccccccccccc
Confidence 9999964 578999999999999999987653 388999999999999876
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.19 E-value=6.7e-11 Score=111.88 Aligned_cols=97 Identities=23% Similarity=0.251 Sum_probs=79.9
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
.++++|.+.++ .++.+|. ..++|++|++++|.+..+|.. +.+|+.|++++| .++.++. + ...|++|++
T Consensus 38 ~~l~~LdLs~~-~L~~lp~---~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n-~l~~l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNL-GLSSLPE---LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTS-CCSCCCS---CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCC-CCCCCCC---CCCCCCEEECCCCCCcccccc----hhhhhhhhhhhc-ccchhhh-h--ccccccccc
Confidence 46889999999 8988863 257899999999999999863 468999999999 8887764 2 246999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCC
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAG 319 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~ 319 (459)
++|.+..+|. ++++++|++|++.++....
T Consensus 106 ~~n~l~~lp~-------------~~~l~~L~~L~l~~~~~~~ 134 (353)
T d1jl5a_ 106 SNNQLEKLPE-------------LQNSSFLKIIDVDNNSLKK 134 (353)
T ss_dssp CSSCCSSCCC-------------CTTCTTCCEEECCSSCCSC
T ss_pred cccccccccc-------------hhhhccceeeccccccccc
Confidence 9999988774 7789999999998877654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.1e-10 Score=107.51 Aligned_cols=185 Identities=16% Similarity=0.084 Sum_probs=108.7
Q ss_pred CCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCCEEEcCCC-CCcccCHHHHHhhh
Q 012641 218 PPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQYLNLSNT-NICELPIGIKKNLK 294 (459)
Q Consensus 218 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~~L~l~~~-~l~~lp~~i~~Ll~ 294 (459)
.....+|++|++++|.+. .....++..+++|++|++++| .+. ..+..++.+++|++|++++| .++. .++..
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd--~~l~~--- 115 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSE--FALQT--- 115 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCH--HHHHH---
T ss_pred hccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc-CCCcHHHHHHhcCCCCcCccccccccccc--cccch---
Confidence 345567888888887543 222344778889999999888 665 34667888888999999886 4542 11111
Q ss_pred hCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhcc-ccCceeEEEEeChh-hhhhhhcchhHHhhhhhh
Q 012641 295 AIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL-KHLQEISVIILTLD-SLNKLKSSSKLQSCVRRQ 372 (459)
Q Consensus 295 ~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~-~~~~l~~~~~l~~~L~~L 372 (459)
+ +.++++|++|++++|.... .......+..+ ++|+.|++...... .-..+.........|+.|
T Consensus 116 -l----~~~~~~L~~L~ls~c~~~~----------~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L 180 (284)
T d2astb2 116 -L----LSSCSRLDELNLSWCFDFT----------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180 (284)
T ss_dssp -H----HHHCTTCCEEECCCCTTCC----------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred -h----hHHHHhccccccccccccc----------cccchhhhcccccccchhhhccccccccccccccccccccccccc
Confidence 1 3457788888888875321 12223334443 67888877532111 111122222222345666
Q ss_pred hcc-CCCCCCccccCccccCCccCcccccCccEEEEecC-CCCC--CcccccCCCcceeecccC
Q 012641 373 VMG-LPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKD--LTCILYIPRLRFLFAKDC 432 (459)
Q Consensus 373 ~l~-~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~--lp~l~~l~~L~~L~l~~c 432 (459)
+++ +..++.- .+ ..+ ..+++|++|++++| .+++ +..++++|+|+.|++++|
T Consensus 181 ~L~~~~~itd~---~~----~~l--~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 181 DLSDSVMLKND---CF----QEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp ECTTCTTCCGG---GG----GGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccccccCCCch---hh----hhh--cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 552 2222211 00 111 34788999999988 6654 234778889999999887
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.05 E-value=4.4e-12 Score=110.51 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=65.7
Q ss_pred cccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeee
Q 012641 233 MIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSW 312 (459)
Q Consensus 233 ~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l 312 (459)
.+..++.+ +..+++|++|+|++| .|+.++ .++.+++|++|++++|.++.+|.. ...+.+|++|++
T Consensus 36 ~i~~l~~s-l~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~------------~~~~~~L~~L~l 100 (198)
T d1m9la_ 36 PIEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENL------------DAVADTLEELWI 100 (198)
T ss_dssp TCCCCHHH-HHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSH------------HHHHHHCCEEEC
T ss_pred chhhhhhH-HhcccccceeECccc-CCCCcc-cccCCccccChhhccccccccccc------------cccccccccccc
Confidence 34556655 788888888888888 888876 478888888888888888777642 223456888888
Q ss_pred cCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 313 VPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
.+|.+. .+..+..+++|+.|+++.+.
T Consensus 101 ~~N~i~--------------~l~~~~~l~~L~~L~L~~N~ 126 (198)
T d1m9la_ 101 SYNQIA--------------SLSGIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp SEEECC--------------CHHHHHHHHHSSEEEESEEE
T ss_pred cccccc--------------ccccccccccccccccccch
Confidence 887652 24567778888888886543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=7.1e-11 Score=108.87 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=103.9
Q ss_pred hcCCCccEEEccCCCCccc--ccccccCCCCCCEEEcCCCCCcc-cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCC
Q 012641 243 QSMHALRVLDSSQNAKLSK--LHVGEGELIDLQYLNLSNTNICE-LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAG 319 (459)
Q Consensus 243 ~~l~~Lr~L~L~~~~~i~~--lP~~i~~L~~L~~L~l~~~~l~~-lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~ 319 (459)
.....|++||++++ .+.. ++.-+..+++|++|++++|.+.. .+. . +.++++|++|++++|...
T Consensus 43 ~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-----------~-l~~~~~L~~L~Ls~c~~i- 108 (284)
T d2astb2 43 FSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-----------T-LAKNSNLVRLNLSGCSGF- 108 (284)
T ss_dssp CCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-----------H-HTTCTTCSEEECTTCBSC-
T ss_pred ccCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHHHH-----------H-HhcCCCCcCccccccccc-
Confidence 34568999999998 6653 55667889999999999997652 222 1 677899999999997532
Q ss_pred cCCCCCCCCccccchh-hhhccccCceeEEEEeChhhhhhhhc-chhHHhhhhhhhcc-CC-CCCCccccCccccCCccC
Q 012641 320 FNYGSSVPGVTVLLLE-ELESLKHLQEISVIILTLDSLNKLKS-SSKLQSCVRRQVMG-LP-ELSSLIDISSSSLTTMMK 395 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~-~l~~L~~L~~L~l~~~~~~~~~~l~~-~~~l~~~L~~L~l~-~~-~l~~l~~~~l~~~~~~i~ 395 (459)
+..... -...+++|++|+++....-.-..+.. .......++.|.+. +. .+..- .+. ..
T Consensus 109 ----------td~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~---~l~---~l-- 170 (284)
T d2astb2 109 ----------SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS---DLS---TL-- 170 (284)
T ss_dssp ----------CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH---HHH---HH--
T ss_pred ----------cccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccc---ccc---cc--
Confidence 222233 34578999999997532111111111 11112234555442 11 11100 000 00
Q ss_pred cccccCccEEEEecC-CCCC--CcccccCCCcceeecccCcchhhhc
Q 012641 396 GHFSQNLQDLSIINC-SIKD--LTCILYIPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 396 ~~~l~~L~~L~L~~~-~l~~--lp~l~~l~~L~~L~l~~c~~l~~i~ 439 (459)
...+++|++|++++| .+++ +..++.+++|++|++++|+.+.+-.
T Consensus 171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~ 217 (284)
T d2astb2 171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 217 (284)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence 134789999999999 6653 4468899999999999998876543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.4e-09 Score=90.31 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=85.1
Q ss_pred EEeecCCCccccCCCCCCCCcceeeeeecc-cccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCCC
Q 012641 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYT-MIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNT 280 (459)
Q Consensus 203 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~ 280 (459)
+...++ .+.++|..+..+++|+.|.+.++ .+..++...|.++.+|+.|++++| .++.+ |..+..+++|++|+|++|
T Consensus 13 l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 13 LRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp EECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCC
Confidence 555666 67777778888999999999876 699999888999999999999999 99999 566899999999999999
Q ss_pred CCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 281 NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 281 ~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.++.+|.++ +. ..+|++|++++|..
T Consensus 91 ~l~~l~~~~-----------~~-~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 91 ALESLSWKT-----------VQ-GLSLQELVLSGNPL 115 (156)
T ss_dssp CCSCCCSTT-----------TC-SCCCCEEECCSSCC
T ss_pred CCcccChhh-----------hc-cccccccccCCCcc
Confidence 998877542 43 34799999999876
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.91 E-value=1e-11 Score=108.08 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=77.6
Q ss_pred CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhh
Q 012641 216 PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKA 295 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~ 295 (459)
..+..+++|+.|++++|.+..++. +..+++|++|++++| .++.+|.....+.+|++|++++|.++.++.
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-------- 110 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSG-------- 110 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHHH--------
T ss_pred hHHhcccccceeECcccCCCCccc--ccCCccccChhhccc-cccccccccccccccccccccccccccccc--------
Confidence 345567788888888887777764 778888888888888 787777655556678888888887776643
Q ss_pred CCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 296 IPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 296 lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
+.++++|++|++++|.+.. ...+..+..+++|+.|++..+
T Consensus 111 -----~~~l~~L~~L~L~~N~i~~-----------~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 111 -----IEKLVNLRVLYMSNNKITN-----------WGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp -----HHHHHHSSEEEESEEECCC-----------HHHHHHHTTTTTCSEEEECSS
T ss_pred -----ccccccccccccccchhcc-----------ccccccccCCCccceeecCCC
Confidence 5567778888888776531 122456777888888877543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=3.3e-08 Score=81.83 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=82.9
Q ss_pred ecCCCcccccc-ccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 183 QETDKSIKVQE-TASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 183 ~~~~~~~~~~~-~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
..+......|. ....++++.|.+.++..++.++ ..+..+++|+.|++++|.+..+++..|..+++|++|+|++| .++
T Consensus 15 c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~ 93 (156)
T d2ifga3 15 CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALE 93 (156)
T ss_dssp CCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCS
T ss_pred ecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC-CCc
Confidence 34444545443 3456789999997663588886 45788999999999999999999888999999999999999 999
Q ss_pred cccccccCCCCCCEEEcCCCCCc
Q 012641 261 KLHVGEGELIDLQYLNLSNTNIC 283 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~l~ 283 (459)
.+|..+.....|++|+|++|++.
T Consensus 94 ~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 94 SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccChhhhccccccccccCCCccc
Confidence 99988777778999999999874
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.20 E-value=1.3e-07 Score=88.96 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=23.7
Q ss_pred ccCccEEEEecCCCCC-----Ccc-c-ccCCCcceeecccC
Q 012641 399 SQNLQDLSIINCSIKD-----LTC-I-LYIPRLRFLFAKDC 432 (459)
Q Consensus 399 l~~L~~L~L~~~~l~~-----lp~-l-~~l~~L~~L~l~~c 432 (459)
.+.|++|++++|.+.. +.. + ..+++|++|+|+++
T Consensus 272 ~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N 312 (344)
T d2ca6a1 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312 (344)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence 4678999999885543 222 3 35788999999873
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=2.7e-06 Score=70.37 Aligned_cols=87 Identities=20% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc---ccccCCCCCCEEEcCCCCCcccCHHHHHhhhh
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH---VGEGELIDLQYLNLSNTNICELPIGIKKNLKA 295 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP---~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~ 295 (459)
..+..+..+....+....+ ...+..++.|++|+|++| .++.++ ..+..+++|++|++++|.|++++. +..
T Consensus 39 ~~~~~~~~l~~~~~~~~~l-~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~-l~~---- 111 (162)
T d1koha1 39 VAQNIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDK---- 111 (162)
T ss_dssp TTTTCCCCTTSHHHHHHHH-HHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGG-HHH----
T ss_pred hhccchhhcchhhhHhhhh-HHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchh-hhh----
Confidence 3334444444444333233 334678999999999999 888764 446789999999999999998875 211
Q ss_pred CCCCcCCCCCCCCEeeecCCCCC
Q 012641 296 IPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 296 lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
+. ..+|++|++.+|.+.
T Consensus 112 -----l~-~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 112 -----IK-GLKLEELWLDGNSLS 128 (162)
T ss_dssp -----HT-TCCCSSCCCTTSTTS
T ss_pred -----hh-ccccceeecCCCCcC
Confidence 33 347899999999873
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=9.4e-06 Score=66.98 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=63.2
Q ss_pred CCCcceeeeeecccccccch--hHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhC
Q 012641 220 CCPRLLTLLVRYTMIKEFEN--KFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAI 296 (459)
Q Consensus 220 ~~~~L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~l 296 (459)
.+++|++|++++|.+..+++ ..+..+++|++|++++| .++.++. ......+|+.|++++|++......-......+
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 47889999999998877653 44788999999999999 9998865 22334579999999999875532111111111
Q ss_pred CCCcCCCCCCCCEeeec
Q 012641 297 PAGMLSSLLSLRVFSWV 313 (459)
Q Consensus 297 p~~~i~~L~~L~~L~l~ 313 (459)
+..+++|+.|+..
T Consensus 142 ----~~~~P~L~~LDg~ 154 (162)
T d1koha1 142 ----RERFPKLLRLDGH 154 (162)
T ss_dssp ----HTTSTTCCEETTE
T ss_pred ----HHHCCCCCEECcC
Confidence 5567788888743
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.56 E-value=5.3e-05 Score=70.36 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=27.8
Q ss_pred cccCccEEEEecCCCCC-----Cc-ccccCCCcceeecccCc
Q 012641 398 FSQNLQDLSIINCSIKD-----LT-CILYIPRLRFLFAKDCP 433 (459)
Q Consensus 398 ~l~~L~~L~L~~~~l~~-----lp-~l~~l~~L~~L~l~~c~ 433 (459)
..++|+.|+|++|.+.. +. .+...++|++|++++|.
T Consensus 213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~ 254 (344)
T d2ca6a1 213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 254 (344)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred chhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence 47889999999985443 22 36778999999999875
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=5.6e-05 Score=72.51 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=69.5
Q ss_pred cceEEEeecCCCccccC--CCCCCCCcceeeeeecccccccc----hhHHhcCCCccEEEccCCCCccc-----cccccc
Q 012641 199 EAVRVSLWRSPSIDSLS--PTPPCCPRLLTLLVRYTMIKEFE----NKFFQSMHALRVLDSSQNAKLSK-----LHVGEG 267 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~L~~~~~i~~-----lP~~i~ 267 (459)
+++.|.++.+ .+.... ..+..++++++|.+.+|.+.... ...+..+++|++|||++| .++. +...+.
T Consensus 3 ~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred CCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence 5677788777 665531 33455678888888888654221 122567888888888888 6652 223232
Q ss_pred C-CCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 268 E-LIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 268 ~-L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
. ..+|++|++++|.++.... ..++.. +..+++|++|++++|.+
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~------~~l~~~-l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGC------GVLSST-LRTLPTLQELHLSDNLL 124 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGH------HHHHHH-TTSCTTCCEEECCSSBC
T ss_pred cCCCCCCEEECCCCCcccccc------ccccch-hhccccccccccccccc
Confidence 2 3468888888887764321 112222 67778888888888765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=7.5e-05 Score=71.54 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=64.9
Q ss_pred cccccceEEEeecCCCcccc-----CCCCCCCCcceeeeeecccccccchhHHh-----cCCCccEEEccCCCCccc---
Q 012641 195 ASWNEAVRVSLWRSPSIDSL-----SPTPPCCPRLLTLLVRYTMIKEFENKFFQ-----SMHALRVLDSSQNAKLSK--- 261 (459)
Q Consensus 195 ~~~~~~r~l~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~Lr~L~L~~~~~i~~--- 261 (459)
...++++.+.+.++ .+++. ...+..+++|+.|++++|.+...+-..+. ....|++|+|++| .++.
T Consensus 24 ~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~ 101 (460)
T d1z7xw1 24 PLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC 101 (460)
T ss_dssp HHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred HhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC-Ccccccc
Confidence 34578899999999 66632 13346789999999999976432211122 2357999999999 7864
Q ss_pred --ccccccCCCCCCEEEcCCCCCcc
Q 012641 262 --LHVGEGELIDLQYLNLSNTNICE 284 (459)
Q Consensus 262 --lP~~i~~L~~L~~L~l~~~~l~~ 284 (459)
++..+..+++|++|++++|.+..
T Consensus 102 ~~l~~~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 102 GVLSSTLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred ccccchhhccccccccccccccchh
Confidence 56778889999999999998874
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.53 E-value=0.0026 Score=51.90 Aligned_cols=118 Identities=10% Similarity=0.036 Sum_probs=74.5
Q ss_pred CCCcceeeeeecc-ccc-----ccchhHHhcCCCccEEEccCCCCccc-----ccccccCCCCCCEEEcCCCCCcccCHH
Q 012641 220 CCPRLLTLLVRYT-MIK-----EFENKFFQSMHALRVLDSSQNAKLSK-----LHVGEGELIDLQYLNLSNTNICELPIG 288 (459)
Q Consensus 220 ~~~~L~~L~l~~~-~~~-----~~~~~~~~~l~~Lr~L~L~~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~lp~~ 288 (459)
+.++|+.|+++++ .+. .+-. .+...+.|+.|++++| .+.. +...+...+.|++|++++|.+.. .+
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~-~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~--~g 88 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTP--EL 88 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH--HH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHH-HHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcch--HH
Confidence 3577888888764 332 1222 2566788999999999 7752 23445567889999999998763 33
Q ss_pred HHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCc-cccchhhhhccccCceeEEEEeC
Q 012641 289 IKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGV-TVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 289 i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
+..+... +..-++|++|++.++....+ ... .......+..-++|+.|++....
T Consensus 89 ~~~l~~a-----L~~n~sL~~L~l~~n~~~~~------g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 89 LARLLRS-----TLVTQSIVEFKADNQRQSVL------GNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHH-----TTTTCCCSEEECCCCSSCCC------CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHH-----HHhCCcCCEEECCCCcCCCc------cHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 3333333 45567899999988754210 000 11245566667889988886543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.72 E-value=0.0081 Score=48.65 Aligned_cols=118 Identities=16% Similarity=0.071 Sum_probs=72.9
Q ss_pred CCCcceeeeeecc-ccc-----ccchhHHhcCCCccEEEccCCCCccc-----ccccccCCCCCCEEEcCCCCCcccCHH
Q 012641 220 CCPRLLTLLVRYT-MIK-----EFENKFFQSMHALRVLDSSQNAKLSK-----LHVGEGELIDLQYLNLSNTNICELPIG 288 (459)
Q Consensus 220 ~~~~L~~L~l~~~-~~~-----~~~~~~~~~l~~Lr~L~L~~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~lp~~ 288 (459)
..+.|+.|.++++ .+. .+... +...++|+.|++++| .+.. +-..+.....++++++++|.+. +.+
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~a-l~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~--~~g 90 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFIS--GSG 90 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCC--HHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHH-HhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccccc--chh
Confidence 4577888888763 332 22222 567889999999999 7653 3344566788999999998765 233
Q ss_pred HHHhhhhCCCCcCCCCCCCCEeeecC--CCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 289 IKKNLKAIPAGMLSSLLSLRVFSWVP--TRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 289 i~~Ll~~lp~~~i~~L~~L~~L~l~~--~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
+..+... +...++|+.+++.. |.+.. .........+...++|+.|++......
T Consensus 91 ~~~l~~~-----l~~~~~L~~l~L~l~~n~i~~--------~~~~~La~~L~~n~~L~~L~l~~~~~~ 145 (166)
T d1io0a_ 91 ILALVEA-----LQSNTSLIELRIDNQSQPLGN--------NVEMEIANMLEKNTTLLKFGYHFTQQG 145 (166)
T ss_dssp HHHHHHG-----GGGCSSCCEEECCCCSSCCCH--------HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHH-----HHhCccccEEeeccCCCcCcH--------HHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence 3332222 45567888766653 33311 001234556778889999998765443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.13 E-value=0.011 Score=47.97 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=75.3
Q ss_pred ccceEEEeecCCCccc-----cCCCCCCCCcceeeeeecccccc----cchhHHhcCCCccEEEccCCCCccc-----cc
Q 012641 198 NEAVRVSLWRSPSIDS-----LSPTPPCCPRLLTLLVRYTMIKE----FENKFFQSMHALRVLDSSQNAKLSK-----LH 263 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~Lr~L~L~~~~~i~~-----lP 263 (459)
+.++.|.+.++..++. +...+...+.|++|++++|.+.. .-.+.+...+.|+.|++++| .+.. +-
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~ 93 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL 93 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHH
Confidence 5788888876423432 11345667889999999996542 11233677899999999999 7763 33
Q ss_pred ccccCCCCCCEEEcCCCCCcccCHHH-HHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 264 VGEGELIDLQYLNLSNTNICELPIGI-KKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 264 ~~i~~L~~L~~L~l~~~~l~~lp~~i-~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
..+..-+.|++|++++|.+..+.... ..+.. . +..-++|+.|+++.+.
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~----~-L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM----A-IEENESLLRVGISFAS 142 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH----H-HHHCSSCCEEECCCCC
T ss_pred HHHHhCCcCCEEECCCCcCCCccHHHHHHHHH----H-HHhCCCccEeeCcCCC
Confidence 45677788999999998777664332 22111 1 4445678888886553
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=93.30 E-value=0.024 Score=45.72 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=61.7
Q ss_pred hHHhcCCCccEEEccCCCCcc-----cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecC
Q 012641 240 KFFQSMHALRVLDSSQNAKLS-----KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVP 314 (459)
Q Consensus 240 ~~~~~l~~Lr~L~L~~~~~i~-----~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~ 314 (459)
.+..+.+.|+.|+++++..++ .+-..+...++|++|++++|.+.. .+...+... +...++++.+++.+
T Consensus 11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~--~~~~~L~~~-----l~~~~~l~~l~l~~ 83 (166)
T d1io0a_ 11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND--PVAFALAEM-----LKVNNTLKSLNVES 83 (166)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH--HHHHHHHHH-----HHHCSSCCEEECCS
T ss_pred HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccH--HHHHHHHHH-----Hhhcccchhhhhcc
Confidence 335577899999999753454 233556688999999999998763 222222111 34467899999998
Q ss_pred CCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 315 TRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
|.... .........+...++|+.+++.
T Consensus 84 ~~~~~--------~g~~~l~~~l~~~~~L~~l~L~ 110 (166)
T d1io0a_ 84 NFISG--------SGILALVEALQSNTSLIELRID 110 (166)
T ss_dssp SCCCH--------HHHHHHHHGGGGCSSCCEEECC
T ss_pred ccccc--------hhHHHHHHHHHhCccccEEeec
Confidence 87632 0012244677778888877764
|