Citrus Sinensis ID: 012682

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46

MEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSSYRSMETENQDWSDQASTTDVLPYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALNGLEWEDMELSIRALFIIRLLQ

cccccccccccccccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcc

cccHHHcccccccccEEEEEEccccccHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHccccEEEEEcccccccHHHccccccHHHHHHccccccEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

mevkdivelpnspaLSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKllhvrpritsvptptslaighpvgnfipieQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKknnlssrisicvpsfctvygvekgklssvrpsdlgsigstkddssdtgcsnssssshnsssqtdLGSAVAsythssspslptQRLQALSAVNKTLlhlkpssteinhsrcqsfdveeqkdasssclsgpevrqtvsrsssyrsmetenqdwsdqasttdvlpydsssesqvdVNFELEKLRIELRHVRGMYAIAQNEANdasrkvndlnkckleeETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALNGLEWEDMELSIRALFIIRLLQ

mevkdivelpnspalsvAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEekwktdrlllpfrNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEkgklssvrpsdlgsigstkddssdtGCSNssssshnsssQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHlkpssteinhSRCQSFDVEEQKdasssclsgpevrqtvsrsssyrsmetenqdwsdqastTDVLpydsssesqvdvNFELEKLRIELRHVRGMYAIAqneandasrkvnDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALnglewedmeLSIRALFIIRLLQ

MEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKddssdtgcsnssssshnsssQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSSYRSMETENQDWSDQASTTDVLPYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYetarreaecarasaekeaaqrqeaemkakheakekemleRALNGLEWEDMELSIRALFIIRLLQ

**************LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK*****************************************************************************************************************************************************VNFELEKLRIELRHVRGMYAIAQ*************************************************************************************ALNGLEWEDMELSIRALFIIRL**

****************VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHP********************EEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFT*********SRISICVPSFCTVYGVEKGKLS****************************************************************************************************************************************************************************************************************************************************************GLEWEDMELSIRALFIIRLLQ

MEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVR***************************************************TQRLQALSAVNKTLLHLKPSS********************************************************************VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAK****************************************KEMLERALNGLEWEDMELSIRALFIIRLLQ

***********SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPS****************************************************************************************************************************************SQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALNGLEWEDMELSIRALFIIRLLQ

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MEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSSYRSMETENQDWSDQASTTDVLPYDSSSESQVDVNFExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLEEETRLSEIQLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDMELSIRALFIIRLLQ

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		458	2.2.26 [Sep-21-2011]
Q9SW11		835	U-box domain-containing p	yes	no	0.908	0.498	0.427	6e-83
Q9FKG5		796	U-box domain-containing p	no	no	0.868	0.5	0.388	2e-65
Q9FKG6		845	U-box domain-containing p	no	no	0.877	0.475	0.371	1e-63
Q9LU47		819	Putative U-box domain-con	no	no	0.814	0.455	0.335	2e-45
Q8GUH1		834	U-box domain-containing p	no	no	0.336	0.184	0.260	3e-07
Q8S8S7		801	U-box domain-containing p	no	no	0.207	0.118	0.348	3e-05
P0C6E7		568	Putative U-box domain-con	no	no	0.390	0.315	0.273	0.0004

>sp\|Q9SW11\|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2	Back alignment and function desciption

 Score =  308 bits (789), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 199/466 (42%), Positives = 279/466 (59%), Gaps = 50/466 (10%)

Query: 16  SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIP 75
           +V VA+ G+ KS+Y V WA+EKF  EG   FKLLH+ P ITSVPTP        +GN IP
Sbjct: 21  TVVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTP--------MGNAIP 72

Query: 76  IEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCN 135
           I +VRDDV  AY+QE  W+++ +L P+  +  +R+V VEV VIESD+VA AIA+EV   +
Sbjct: 73  ISEVRDDVVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDS 132

Query: 136 INKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTK 195
           I+++VIG  S+  F+   +K ++ S IS  +P+FCTVY V KGKLS VRPSD     + +
Sbjct: 133 IDRIVIGGSSRSFFS---RKADICSVISALMPNFCTVYVVSKGKLSCVRPSDSDGNATIR 189

Query: 196 DDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAV-NKTLLHLKP 254
           +D S+   S+S SS   S S   + SA  S   S   SLP +R+Q   A+  +  + ++ 
Sbjct: 190 EDGSERTNSSSGSSGPTSDSSDVMSSAHDS--QSRPLSLPVRRMQHFPAIAGQASVPMET 247

Query: 255 SSTEINHSRCQSFDVEEQKDASSSCLSGP--------------EVRQTVSRSSSYR---- 296
           SS   + +RC S D EE +D SS   S                E ++ +S SSS R    
Sbjct: 248 SSVGSDETRCMSLDAEEARDVSSINRSSTDTTSRWTPRRRDYEERKEAMSSSSSNREYGN 307

Query: 297 ----------SMETENQDWSDQAST-TDVLPYDSSSESQVDVNFELEKLRIELRHVRGMY 345
                      ++T +   S QAS  +D L   S +++QV++NFE+EKLR ELRHV+ MY
Sbjct: 308 FGTRFSWSGMGVDTTHSRASQQASNMSDALSEQSYTDNQVNLNFEVEKLRAELRHVQEMY 367

Query: 346 AIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECAR 405
           A+AQ E  DASRK+ +LN+ +LEE  +L E++L E +A ELA++EK+ +E ARR+AE  R
Sbjct: 368 AVAQTETFDASRKLGELNQRRLEEAIKLEELKLKEYEARELAEKEKQNFEKARRDAESMR 427

Query: 406 ASAEKEAAQRQEAEMKAKHEAKEKEMLERALNG-------LEWEDM 444
             AE+E AQR+EAE K+  + KEKE LE  L           WE++
Sbjct: 428 ERAEREIAQRREAERKSARDTKEKEKLEGTLGSPQLQYQHFAWEEI 473

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q9FKG5\|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2	Back alignment and function description

>sp\|Q9FKG6\|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1	Back alignment and function description

>sp\|Q9LU47\|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1	Back alignment and function description

>sp\|Q8GUH1\|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2	Back alignment and function description

>sp\|Q8S8S7\|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=3 SV=1	Back alignment and function description

>sp\|P0C6E7\|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		458
359490160		804	PREDICTED: U-box domain-containing prote	0.941	0.536	0.561	1e-125
147858097		804	hypothetical protein VITISV_021538 [Viti	0.941	0.536	0.558	1e-125
297745064		784	unnamed protein product [Vitis vinifera]	0.897	0.524	0.545	1e-119
449451988		836	PREDICTED: U-box domain-containing prote	0.925	0.507	0.504	1e-100
357455815		809	U-box domain-containing protein [Medicag	0.890	0.504	0.514	2e-98
357455813		797	U-box domain-containing protein [Medicag	0.899	0.516	0.496	3e-94
356508200		785	PREDICTED: U-box domain-containing prote	0.858	0.500	0.487	5e-92
255588643		364	hypothetical protein RCOM_2090500 [Ricin	0.700	0.881	0.535	1e-90
449488729		1074	PREDICTED: U-box domain-containing prote	0.827	0.352	0.498	2e-85
42567138		835	U-box domain-containing protein 35 [Arab	0.908	0.498	0.427	4e-81

>gi\|359490160\|ref\|XP_002266973.2\| PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 257/458 (56%), Positives = 329/458 (71%), Gaps = 27/458 (5%)

Query: 1   MEVKDIVELPNSPAL------SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54
           ME K+I+E     AL      ++AVA+ G +KS+Y V WALEKF+PEG+++FK+LHVRP+
Sbjct: 1   MEAKEIIEEKQELALALPLPSTIAVAINGKKKSKYVVRWALEKFVPEGLHMFKMLHVRPK 60

Query: 55  ITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVE 114
           ITSVPTP        +GN IP+ QVRDDVAAAY +E  W+T  +LLP++ M   ++V+V+
Sbjct: 61  ITSVPTP--------MGNSIPLSQVRDDVAAAYLEEMGWQTSEMLLPYKTMFLHKKVQVD 112

Query: 115 VKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG 174
           V VIESDDVAKAIA+E+A   I+KLVIGA S G+F+ K K  +LS RIS C PSFCTVY 
Sbjct: 113 VVVIESDDVAKAIAEEIAKSTIHKLVIGASSSGMFSRKVKGQSLSLRISECTPSFCTVYT 172

Query: 175 VEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSL 234
           V KG+LSSVRPSD    GS K+DSSD    +S++SS + +S    GSA ASY+H  SPSL
Sbjct: 173 VSKGQLSSVRPSDSDKNGSIKEDSSDA---SSTTSSSSHTSSPHAGSA-ASYSHFHSPSL 228

Query: 235 PTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSS 294
           P QR QALS +N+TLLH +  S E N SR QS D+ E++   S C S  ++    S+ SS
Sbjct: 229 PMQRFQALSTINRTLLHTRTGSIETNSSRRQSLDIREEESFMSPCPSNSDIGYAPSQVSS 288

Query: 295 YRSMETENQDW-SDQASTTDVLPYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEAN 353
            RS  T++Q W SDQAST+D    +SSS SQV++NFELEKLR+ELRHVRG+YA+AQ+E  
Sbjct: 289 ARSFLTDDQSWISDQASTSDAFT-ESSSGSQVNINFELEKLRVELRHVRGIYAMAQSENI 347

Query: 354 DASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAA 413
           DASRK+NDL+K +LEE  +L EI+L EE+A ELA++EK+KYE A+REAE AR  AEKEA 
Sbjct: 348 DASRKLNDLSKRRLEEADKLKEIKLKEEEARELARKEKEKYEAAKREAEYARECAEKEAL 407

Query: 414 QRQEAEMKAKHEAKEKEMLERALNG-------LEWEDM 444
           QR+EAE+KA H+ KEKE LE AL G         WE++
Sbjct: 408 QRKEAEIKALHDVKEKEKLENALVGPVQSYQEFTWEEI 445

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147858097\|emb\|CAN78862.1\| hypothetical protein VITISV_021538 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297745064\|emb\|CBI38656.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449451988\|ref\|XP_004143742.1\| PREDICTED: U-box domain-containing protein 35-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357455815\|ref\|XP_003598188.1\| U-box domain-containing protein [Medicago truncatula] gi\|355487236\|gb\|AES68439.1\| U-box domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357455813\|ref\|XP_003598187.1\| U-box domain-containing protein [Medicago truncatula] gi\|355487235\|gb\|AES68438.1\| U-box domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356508200\|ref\|XP_003522847.1\| PREDICTED: U-box domain-containing protein 35-like [Glycine max]	Back alignment and taxonomy information

>gi\|255588643\|ref\|XP_002534671.1\| hypothetical protein RCOM_2090500 [Ricinus communis] gi\|223524795\|gb\|EEF27713.1\| hypothetical protein RCOM_2090500 [Ricinus communis]	Back alignment and taxonomy information

>gi\|449488729\|ref\|XP_004158155.1\| PREDICTED: U-box domain-containing protein 35-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|42567138\|ref\|NP_194246.2\| U-box domain-containing protein 35 [Arabidopsis thaliana] gi\|172044784\|sp\|Q9SW11.2\|PUB35_ARATH RecName: Full=U-box domain-containing protein 35; AltName: Full=Plant U-box protein 35; Includes: RecName: Full=E3 ubiquitin ligase; Includes: RecName: Full=Serine/threonine-protein kinase gi\|332659618\|gb\|AEE85018.1\| U-box domain-containing protein 35 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		458
TAIR\|locus:2151641		796	AT5G61560 [Arabidopsis thalian	0.762	0.438	0.373	2.6e-53
TAIR\|locus:2117343		835	AT4G25160 [Arabidopsis thalian	0.626	0.343	0.394	2.7e-46
TAIR\|locus:2176177		819	AT5G51270 [Arabidopsis thalian	0.775	0.433	0.307	3.2e-36
TAIR\|locus:2128131		764	AT4G31230 [Arabidopsis thalian	0.342	0.205	0.321	1.8e-24
TAIR\|locus:2061012		788	AT2G24370 [Arabidopsis thalian	0.344	0.200	0.285	8.7e-23
TAIR\|locus:2015656		758	AT1G16760 [Arabidopsis thalian	0.240	0.145	0.336	1.4e-20
TAIR\|locus:2143094		701	AT5G12000 [Arabidopsis thalian	0.200	0.131	0.364	3.4e-20
TAIR\|locus:2180677		703	AT5G26150 [Arabidopsis thalian	0.187	0.122	0.368	7.8e-19
TAIR\|locus:2063601		700	AT2G07020 [Arabidopsis thalian	0.231	0.151	0.339	3.2e-18
TAIR\|locus:2182613		731	AT5G35380 [Arabidopsis thalian	0.185	0.116	0.379	4.1e-18

TAIR\|locus:2151641 AT5G61560 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 553 (199.7 bits), Expect = 2.6e-53, P = 2.6e-53
 Identities = 145/388 (37%), Positives = 222/388 (57%)

Query:    14 ALSVAVAVKGNR-KSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGN 72
             AL VAVA+KGN  K++  V WAL++F  +   +FKLLHV+PR ++  + T          
Sbjct:     5 ALIVAVAIKGNNSKTKGVVRWALQEFASQEHVVFKLLHVQPRDSNSVSTTR--------- 55

Query:    73 FIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVA 132
                    +D   + YK++   KT  +LLP R+M   R V++++ V+ESDD+A AI+  V 
Sbjct:    56 -------KDLTTSVYKKDVDRKTREMLLPSRDMFVHREVQLDIMVLESDDIADAISKAVQ 108

Query:   133 SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIG 192
                I++LVIGA S  IF+WK K++NLSSRI+   P FC+V+ + KGKL +VR SD+ +  
Sbjct:   109 DHGISELVIGASSSIIFSWKLKRSNLSSRIADATPRFCSVHVISKGKLLNVRKSDMDTET 168

Query:   193 STKXXXXXXXXXXXXXXXXXXXXQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTL-LH 251
             S                           S+ +S+  SS+P L  QR+QAL+ VN+ +  +
Sbjct:   169 SIADDRSESRFSSDSHSGTV--------SSTSSHQFSSTPLL-FQRIQALTTVNQKVGTN 219

Query:   252 LKPSSTEINH---SRCQSFDVEEQKDASSSCL---SGPEVRQTVSRSSSYRSMETENQDW 305
             +   + E +H   +R  S DV+E K  +       S   +    S  SS+RS + E    
Sbjct:   220 IGKQNNEPHHHHHNRAGSLDVDESKLLNQKGFYRTSSSGIGYGGSDISSWRSSQME---- 275

Query:   306 SDQASTTDVLPYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKC 365
               +AS++      +SS SQ+  +FELEKL+IELRH++GMYA+AQ+E  DAS+K+ DLN+ 
Sbjct:   276 --EASSSSTYSDPTSSSSQIHKDFELEKLKIELRHIKGMYAVAQSEVIDASKKMQDLNQR 333

Query:   366 KLEEETRLSEIQLLEEKAIELAKQEKKK 393
             + EE TRL  + + EE+A E+ + E+++
Sbjct:   334 RSEEATRLKNLTIREEEADEVVEMERER 361

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002238 "response to molecule of fungal origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR\|locus:2117343 AT4G25160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2176177 AT5G51270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128131 AT4G31230 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2061012 AT2G24370 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2015656 AT1G16760 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143094 AT5G12000 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2180677 AT5G26150 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2063601 AT2G07020 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2182613 AT5G35380 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		458
cd01989		146	cd01989, STK_N, The N-terminal domain of Eukaryoti	2e-47
cd00293		130	cd00293, USP_Like, Usp: Universal stress protein f	1e-07
TIGR02794		346	TIGR02794, tolA_full, TolA protein	3e-05
TIGR02794		346	TIGR02794, tolA_full, TolA protein	1e-04
TIGR02794		346	TIGR02794, tolA_full, TolA protein	7e-04
pfam00582		139	pfam00582, Usp, Universal stress protein family	9e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.002
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	0.002
PRK00409		782	PRK00409, PRK00409, recombination and DNA strand e	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004

>gnl\|CDD\|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

 Score =  160 bits (406), Expect = 2e-47
 Identities = 70/163 (42%), Positives = 98/163 (60%), Gaps = 17/163 (10%)

Query: 16  SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIP 75
           SVAVAV  ++KS+ A+ WAL+    +G     L+HV P ITS+P+ +             
Sbjct: 1   SVAVAVDKDKKSKNALKWALDNLATKGQT-IVLVHVHPPITSIPSSSG------------ 47

Query: 76  IEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCN 135
               + +VA+AYKQEE  +   LLLP+R  C+++ V+ E  V+E DDVAKAI + VA   
Sbjct: 48  ----KLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHG 103

Query: 136 INKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178
           I KLV+GA S   F+ KFKK++++S +    P FCTVY V KG
Sbjct: 104 ITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSKG 146

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146

>gnl\|CDD\|238182 cd00293, USP_Like, Usp: Universal stress protein family	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|216006 pfam00582, Usp, Universal stress protein family	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		458
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	99.95
PRK15456		142	universal stress protein UspG; Provisional	99.91
PRK15005		144	universal stress protein F; Provisional	99.89
PRK09982		142	universal stress protein UspD; Provisional	99.87
PRK15118		144	universal stress global response regulator UspA; P	99.86
PF00582		140	Usp: Universal stress protein family; InterPro: IP	99.85
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.84
cd01987		124	USP_OKCHK USP domain is located between the N-term	99.83
PRK10116		142	universal stress protein UspC; Provisional	99.82
PRK11175		305	universal stress protein UspE; Provisional	99.8
PRK11175		305	universal stress protein UspE; Provisional	99.75
cd00293		130	USP_Like Usp: Universal stress protein family. The	99.71
COG0589		154	UspA Universal stress protein UspA and related nuc	99.7
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	99.4
PRK10490		895	sensor protein KdpD; Provisional	99.12
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	99.01
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	98.02
PLN03159		832	cation/H(+) antiporter 15; Provisional	96.59
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	96.24
PF01171		182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	94.87
cd01992		185	PP-ATPase N-terminal domain of predicted ATPase of	94.84
cd01993		185	Alpha_ANH_like_II This is a subfamily of Adenine n	91.88
PLN03159		832	cation/H(+) antiporter 15; Provisional	91.74
PRK10696		258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	91.68
cd07653		251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	89.42
PRK09510		387	tolA cell envelope integrity inner membrane protei	89.01
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.76
PLN03086		567	PRLI-interacting factor K; Provisional	88.4
COG0037		298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	88.04
TIGR00268		252	conserved hypothetical protein TIGR00268. The N-te	87.65
PTZ00121		2084	MAEBL; Provisional	85.91
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	84.9
PRK13820		394	argininosuccinate synthase; Provisional	82.86
KOG0163		1259	consensus Myosin class VI heavy chain [Cytoskeleto	80.98

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

Probab=99.95  E-value=1.5e-27  Score=213.01  Aligned_cols=146  Identities=49%  Similarity=0.768  Sum_probs=122.5

Q ss_pred             eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682           16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT   95 (458)
Q Consensus        16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a   95 (458)
                      +||||+|+|+.|.+||+||++++...+.. +++|||.++....+.+        .+.        .+....+.+...+.+
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~-l~ll~v~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~   63 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQT-IVLVHVHPPITSIPSS--------SGK--------LEVASAYKQEEDKEA   63 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCc-EEEEEeccCcccCCCC--------ccc--------hHHHHHHHHHHHHHH
Confidence            59999999999999999999999877775 9999999764321110        010        012234455566778


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682           96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV  175 (458)
Q Consensus        96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV  175 (458)
                      +++|..+...|...|+.++..++.+|+|++.|+++|++.++|+||||+||++++.++|+|++|+.+|++++|++||||||
T Consensus        64 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv  143 (146)
T cd01989          64 KELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVV  143 (146)
T ss_pred             HHHHHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEE
Confidence            88999999889888999999998867999999999999999999999999999999999866999999999999999999


Q ss_pred             cCC
Q 012682          176 EKG  178 (458)
Q Consensus       176 ~kg  178 (458)
                      ++|
T Consensus       144 ~~~  146 (146)
T cd01989         144 SKG  146 (146)
T ss_pred             eCc
Confidence            987

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]	Back alignment and domain information

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	Back alignment and domain information

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	Back alignment and domain information

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins	Back alignment and domain information

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PLN03086 PRLI-interacting factor K; Provisional	Back alignment and domain information

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR00268 conserved hypothetical protein TIGR00268	Back alignment and domain information

>PTZ00121 MAEBL; Provisional	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PRK13820 argininosuccinate synthase; Provisional	Back alignment and domain information

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		458
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	5e-06
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	2e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	4e-04
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	5e-04
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-04
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.2 bits (137), Expect = 7e-09
 Identities = 61/492 (12%), Positives = 134/492 (27%), Gaps = 179/492 (36%)

Query: 2   EVKDIVELPNSPALSVAVAVKGNRKSR-YAVLWAL--------EKFIPEGIN-----LFK 47
           E+  I+                +  S    + W L        +KF+ E +      L  
Sbjct: 50  EIDHIIMSK-------------DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 48  LLHVRPRITSVPTPTSLAIGHPVGN----FIP--------IEQVRD-------------- 81
            +    R  S+ T   +     + N    F            ++R               
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 82  ------------DVAAAYKQEEK------W-------KTDRLLLPFRNMCAQRRVEVEVK 116
                       DV  +YK + K      W         + +L   + +  Q    ++  
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ----IDPN 212

Query: 117 VIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNL-------SSRISICVPSF 169
                D +  I   + S       I A+ + +   K  +N L       +++      +F
Sbjct: 213 WTSRSDHSSNIKLRIHS-------IQAELRRLLKSKPYENCLLVLLNVQNAKA---WNAF 262

Query: 170 ---CTVYGVEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLG------ 220
              C +       L + R                T   ++++++H S     +       
Sbjct: 263 NLSCKI-------LLTTR------------FKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 221 -SAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSF---DVEEQKDAS 276
            S +  Y       LP + L      N   L +   S     +   ++   + ++     
Sbjct: 304 KSLLLKYLDCRPQDLPREVLT----TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 277 SSC---LSGPEVRQTVSRSSSYRSMETENQDWSDQASTTDVLPYDSSSESQV-------D 326
            S    L   E R+       +  +               V P  +   + +        
Sbjct: 360 ESSLNVLEPAEYRK------MFDRLS--------------VFPPSAHIPTILLSLIWFDV 399

Query: 327 VNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDL---NKCKLEEETRLSEIQLLEEKA 383
           +  ++  +  +L      Y++ + +  +++  +  +    K KLE E        L    
Sbjct: 400 IKSDVMVVVNKLHK----YSLVEKQPKESTISIPSIYLELKVKLENEYA------LHRSI 449

Query: 384 IELAKQEKKKYE 395
           ++      K ++
Sbjct: 450 VD-HYNIPKTFD 460

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		458
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	99.92
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	99.91
3fg9_A		156	Protein of universal stress protein USPA family; A	99.9
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.9
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	99.9
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	99.9
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	99.89
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	99.89
2z08_A		137	Universal stress protein family; uncharacterized c	99.88
3tnj_A		150	Universal stress protein (USP); structural genomic	99.88
3dlo_A		155	Universal stress protein; unknown function, struct	99.88
3fdx_A		143	Putative filament protein / universal stress PROT;	99.87
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	99.83
3olq_A		319	Universal stress protein E; structural genomics, P	99.81
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	99.8
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.79
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.79
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	99.79
3loq_A		294	Universal stress protein; structural genomics, PSI	99.78
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.77
3olq_A		319	Universal stress protein E; structural genomics, P	99.76
3loq_A		294	Universal stress protein; structural genomics, PSI	99.76
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.74
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	99.67
3a2k_A		464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	92.1
1wy5_A		317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	90.34
2efl_A		305	Formin-binding protein 1; EFC domain, structural g	89.35
2efk_A		301	CDC42-interacting protein 4; EFC domain, structura	86.03
2iel_A		138	Hypothetical protein TT0030; TT0030,thermus thermo	83.66
3haj_A		486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	80.45

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

Probab=99.92  E-value=3.7e-24  Score=188.15  Aligned_cols=143  Identities=15%  Similarity=0.107  Sum_probs=120.8

Q ss_pred             CCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHH
Q 012682           11 NSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE   90 (458)
Q Consensus        11 ~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~   90 (458)
                      +..+++||||+|+|+.|..|++||+.++...++. |++|||+++.....          .+.        ......+.+.
T Consensus         2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~-l~ll~v~~~~~~~~----------~~~--------~~~~~~~~~~   62 (146)
T 3s3t_A            2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQAN-LTALYVVDDSAYHT----------PAL--------DPVLSELLDA   62 (146)
T ss_dssp             CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCE-EEEEEEEECCCCCC----------GGG--------HHHHHHHHHH
T ss_pred             CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCE-EEEEEEecCccccc----------ccc--------ccccHHHHHH
Confidence            3568999999999999999999999999877784 99999998753211          000        0122345556


Q ss_pred             HHHHHHHHHHHHHHHhhcCCC-eEEEEEEecCCHHHHHHH-HHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCC
Q 012682           91 EKWKTDRLLLPFRNMCAQRRV-EVEVKVIESDDVAKAIAD-EVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPS  168 (458)
Q Consensus        91 ~~~~a~~lL~~~~~~~~~~gV-~ve~vvle~Gdpa~aIve-~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~  168 (458)
                      ..+.+++.|..+...+...|+ .++..+.. |+|++.|++ +|++.++||||||++|++++.++|+|| |+.+|+++++ 
T Consensus        63 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~-g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs-~~~~vl~~~~-  139 (146)
T 3s3t_A           63 EAAHAKDAMRQRQQFVATTSAPNLKTEISY-GIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGS-TTSYVVDHAP-  139 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCCCCEEEEEE-ECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCH-HHHHHHHHCS-
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcceEEEEec-CChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcc-hHHHHhccCC-
Confidence            677788899999999988899 88888876 899999999 999999999999999999999999996 9999999999 


Q ss_pred             CceEEEEc
Q 012682          169 FCTVYGVE  176 (458)
Q Consensus       169 ~C~VlVV~  176 (458)
                       |||+||+
T Consensus       140 -~pVlvV~  146 (146)
T 3s3t_A          140 -CNVIVIR  146 (146)
T ss_dssp             -SEEEEEC
T ss_pred             -CCEEEeC
Confidence             9999995

PyMOL of 3s3t

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}	Back alignment and structure

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*	Back alignment and structure

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4	Back alignment and structure

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4	Back alignment and structure

>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4	Back alignment and structure

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		458
d2gm3a1		171	c.26.2.4 (A:5-175) Putative ethylene-responsive pr	7e-04

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 27  SRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAA 86
            + A  W LEK +    + FK+L +      V              +   E  RD     
Sbjct: 23  CKRAFEWTLEKIVRSNTSDFKILLL-----HVQVVDEDGFDDVDSIYASPEDFRD----- 72

Query: 87  YKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ 146
            +Q  K K   LL  F N C +  V  E   I++ D    I  EV     + LV+G++  
Sbjct: 73  MRQSNKAKGLHLLEFFVNKCHEIGVGCEA-WIKTGDPKDVICQEVKRVRPDFLVVGSRGL 131

Query: 147 GIFTWKF 153
           G F   F
Sbjct: 132 GRFQKVF 138

PyMOL of d2gm3a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		458
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.94
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	99.93
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.91
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.89
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	99.85
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	99.83
d1wy5a1		216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	93.95
d2efla1		288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	88.49
d2efka1		279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	87.04
d1ni5a1		227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	85.34

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=2.4e-26  Score=204.34  Aligned_cols=156  Identities=7%  Similarity=0.002  Sum_probs=123.0

Q ss_pred             CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHH
Q 012682           14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW   93 (458)
Q Consensus        14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~   93 (458)
                      |++||||||+|+.|++|++||++++...++ +|+||||+++......+.   ... ...........++....+.+...+
T Consensus         3 ~~~ILvavD~s~~s~~al~~a~~la~~~~a-~l~llhV~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1mjha_           3 YKKILYPTDFSETAEIALKHVKAFKTLKAE-EVILLHVIDEREIKKRDI---FSL-LLGVAGLNKSVEEFENELKNKLTE   77 (160)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCC-EEEEEEEEEGGGTC---------------------CHHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEEEeccccccccccc---ccc-cccccccchhHHHHHHHHHHHHHH
Confidence            689999999999999999999999988888 599999997753211110   000 000000111112334455666677


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEE
Q 012682           94 KTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVY  173 (458)
Q Consensus        94 ~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~Vl  173 (458)
                      .+++.|..+...|...|++++..+.. |+|++.|+++|++.++||||||+||++++.++|+|| |+.+|++++|  |||+
T Consensus        78 ~~~~~l~~~~~~~~~~gv~~~~~~~~-G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS-~a~~vl~~s~--~pVl  153 (160)
T d1mjha_          78 EAKNKMENIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGS-VTENVIKKSN--KPVL  153 (160)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCH-HHHHHHHHCC--SCEE
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEEe-ccHHHHHhhhhhccccceEEeccCCCCcccccccCc-HHHHHHhcCC--CCEE
Confidence            88899999999999999999999876 999999999999999999999999999999999996 9999999999  9999


Q ss_pred             EEcCC
Q 012682          174 GVEKG  178 (458)
Q Consensus       174 VV~kg  178 (458)
                      ||++.
T Consensus       154 vV~~~  158 (160)
T d1mjha_         154 VVKRK  158 (160)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            99874

PyMOL of d1mjha_

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure